Query 038992
Match_columns 286
No_of_seqs 132 out of 753
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:24:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sf5_B Urease accessory protei 100.0 1.1E-52 3.9E-57 380.9 32.2 235 13-282 1-264 (265)
2 2k6w_A Putative uncharacterize 60.5 16 0.00056 28.1 5.6 36 57-92 79-114 (120)
3 4hhu_A OR280; engineered prote 48.0 94 0.0032 24.1 8.5 40 243-282 75-114 (170)
4 1x9l_A CUI-DR1885; copper bind 41.5 21 0.00071 28.7 3.5 37 57-93 104-140 (149)
5 3m21_A Probable tautomerase HP 18.0 2E+02 0.007 18.7 4.7 32 253-284 3-38 (67)
6 1acx_A Actinoxanthin; antibact 17.8 2E+02 0.0068 21.7 4.9 30 63-93 4-33 (108)
7 2xsk_A CSGC; chaperone; 1.70A 15.1 87 0.003 23.6 2.3 28 71-98 71-98 (110)
8 2opa_A Probable tautomerase YW 14.4 2.4E+02 0.0083 17.5 4.7 32 253-284 3-35 (61)
9 1gyx_A YDCE, B1461, hypothetic 14.0 2.8E+02 0.0095 18.6 4.7 32 253-284 3-36 (76)
10 3mb2_A 4-oxalocrotonate tautom 13.9 2.9E+02 0.0098 18.2 4.7 32 253-284 4-36 (72)
No 1
>3sf5_B Urease accessory protein UREH; UREF, chaperone; 2.50A {Helicobacter pylori}
Probab=100.00 E-value=1.1e-52 Score=380.90 Aligned_cols=235 Identities=17% Similarity=0.255 Sum_probs=201.2
Q ss_pred hcccccceeEEEEEEEe-CCeeEEeeeeeeccEEEeccccCCCCCCCcEEEEEeccCcceecCcEEEEEEEEcCCcEEEE
Q 038992 13 MESKIEAATGKLVVKKV-GGKSTVTRCFSKYPLKFIIPNKVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVL 91 (286)
Q Consensus 13 ~~~~~~~~~g~L~~~~~-~g~T~l~~~~~~~Plkl~~p~~~~~~~~~~~~v~ll~~~GGl~~GD~l~i~i~v~~ga~l~l 91 (286)
|++.......+|.|+.+ +|+|++.++++++||||++|++ +++ +.+++||+|++||+++||+++|+|+|++||+++|
T Consensus 1 ~~~~g~~a~L~L~~~~~~~grT~l~~~~~~~Plkv~~p~~--~~~-~~~~v~ll~~~gGl~gGD~l~i~i~v~~ga~~~l 77 (265)
T 3sf5_B 1 MNTYAQESKLRLKTKIGADGRCVIEDNFFTPPFKLMAPFY--PKD-DLAEIMLLAVSPGMMRGDAQDVQLNIGPNCKLRI 77 (265)
T ss_dssp ----CCEEEEEEEEEECTTSSEEEEEEEECTTEEECCCBC--SST-TCEEEEEEECCSCBCTTCEEEEEEEECTTCEEEE
T ss_pred CCCCceEEEEEEEEEECCCCceEeeeeEeccCeEEEeccc--CCC-CcEEEEEEcCCCCCcCCCEEEEEEEECCCCEEEE
Confidence 34444444555789999 9999999999999999999976 432 5799999999999999999999999999999999
Q ss_pred eCcccceeecCCCCCcceeE----------EE----------------EEEEEEcCCceEEEeeeeccCCCCCCCccccc
Q 038992 92 TTQASTKVYKSLGSKSSEQI----------LE----------------KQIFRVVLDSSLVIVDWITSGRHESGEKWDFE 145 (286)
Q Consensus 92 tTQsatkvy~~~~~~~s~q~----------le----------------~~~i~L~~~A~ll~~d~i~~GR~a~GE~f~~~ 145 (286)
||||||||||+.++.+ +|. || +++|+|+++|+|+++||+++||+++||.|.|+
T Consensus 78 tTqaatkvy~~~~~~a-~q~~~~~v~~ga~Le~lP~p~I~f~~a~~~~~~~v~L~~~A~l~~~e~~~~GR~a~GE~f~~g 156 (265)
T 3sf5_B 78 TSQSFEKIHNTEDGFA-SRDMHIVVGENAFLDFAPFPLIPFENAHFKGNTTISLRSSSQLLYSEIIVAGRVARNELFKFN 156 (265)
T ss_dssp ECCCCEEECCCTTSCE-EEEEEEEECTTCEEEECCCCEEECTTCEEEEEEEEEECTTCEEEEEEEEECSCGGGTCCSCSS
T ss_pred ECcccceEEcCCCCcE-EEEEEEEECCCCEEEecCCCcEecCCCEEEEEEEEEECCCCEEEEEEeeecCcCcCCCCccCC
Confidence 9999999999998765 443 22 99999999999999999999999999999999
Q ss_pred eEEEEEEEEEcCCEEEEEEeeeeeCCCc-CchhhccCCCcEEEEEEEECCCchhHHHHHHHHHHHHhhhcccCCCCCCCC
Q 038992 146 LYRSTNHIFLEGDQPLFLDSVLLEQGNI-TNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRRMMSEQLYLPSTGLRP 224 (286)
Q Consensus 146 ~~~s~~~I~~~gg~ll~~D~~~L~~~~~-~~~~~~~~g~~~~gtl~~v~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 224 (286)
+|+++++|+++| +|++.|++.|+|+.. ...++.|+||+++|||++++|..+. +.+++ .+.+.
T Consensus 157 ~~~~~~~i~~~g-~ll~~d~~~l~~~~~~~~~~~~l~g~~~~gtl~~~~p~~~~--~~lr~----~l~~~---------- 219 (265)
T 3sf5_B 157 RLHTKISILQDE-KPIYYDNTILDPKTTDLNNMCMFDGYTHYLNLVLVNCPIEL--SGVRE----CIEES---------- 219 (265)
T ss_dssp EEEEEEEEEETT-EEEEEEEEEECTTTSCTTSTTTTTTCCEEEEEEEESCSCCH--HHHHH----HHHTC----------
T ss_pred EEEEEEEEEECC-EEEEEEeeEECCCcccccCchhhCCCCEEEEEEEEcCCcCH--HHHHH----Hhhhc----------
Confidence 999999999998 999999999999875 4567889999999999999998875 44444 33211
Q ss_pred CCCccCccccCCCceEEEEeeeccCCcEEEEEEccCCHHHHHHHHHHHHHHhhHhh-CC
Q 038992 225 HGKTQSDHFLAKPSFVVSCSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLL-GV 282 (286)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~s~l~~~~~glvvR~la~~~e~lr~~l~~~~~~lr~~l-G~ 282 (286)
+++.+|+|.+ .+++++||+||++++.++++|.++|+.+|+.+ |+
T Consensus 220 ------------~~~~~g~S~l--~~~~lvvR~La~~~~~lr~~l~~i~~~lR~~~~g~ 264 (265)
T 3sf5_B 220 ------------EGVDGAVSET--ASSHLCVKALAKGSEPLLHLREKIARLVTQTTTQK 264 (265)
T ss_dssp ------------TTEEEEEEEC--TTSCEEEEEEESSHHHHHHHHHHHHHHHHCCCTTC
T ss_pred ------------cCceEEEeec--CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 1366889886 35899999999999999999999999999977 75
No 2
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=60.55 E-value=16 Score=28.15 Aligned_cols=36 Identities=8% Similarity=0.127 Sum_probs=32.2
Q ss_pred CCcEEEEEeccCcceecCcEEEEEEEEcCCcEEEEe
Q 038992 57 TDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLT 92 (286)
Q Consensus 57 ~~~~~v~ll~~~GGl~~GD~l~i~i~v~~ga~l~lt 92 (286)
|+..|++|+....-|..||.+.+.++.+.+..+.++
T Consensus 79 PGG~HvML~gl~~~l~~G~~v~ltL~Fe~~~~v~v~ 114 (120)
T 2k6w_A 79 PGGYHFMLLGLKRPLKAGEEVELDLLFAGGKVLKVV 114 (120)
T ss_dssp TTTEEEEEEEESSCBCTTCEEEEEEEETTTEEEEEE
T ss_pred CCceEEEEeCCCCCCCCCCEEEEEEEECCCCeEEEE
Confidence 456899999999999999999999999998877764
No 3
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=48.04 E-value=94 Score=24.05 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=30.3
Q ss_pred EeeeccCCcEEEEEEccCCHHHHHHHHHHHHHHhhHhhCC
Q 038992 243 CSAFGPKGIGIVVRIAAMTTESVYRFLQHQLAGMETLLGV 282 (286)
Q Consensus 243 ~s~l~~~~~glvvR~la~~~e~lr~~l~~~~~~lr~~lG~ 282 (286)
....+...+..++|+-|.|-+.+.+++.++....|..-|.
T Consensus 75 y~imgsgsgvm~i~f~gddlea~ekalkemirqarkfagt 114 (170)
T 4hhu_A 75 YQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGT 114 (170)
T ss_dssp EEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcce
Confidence 3333333467889999999999999999998887765553
No 4
>1x9l_A CUI-DR1885; copper binding protein, solution ST holo-form, structural proteomics in europe, spine, structur genomics; NMR {Deinococcus radiodurans} SCOP: b.2.10.1 PDB: 2jqa_A
Probab=41.46 E-value=21 Score=28.65 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=32.0
Q ss_pred CCcEEEEEeccCcceecCcEEEEEEEEcCCcEEEEeC
Q 038992 57 TDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTT 93 (286)
Q Consensus 57 ~~~~~v~ll~~~GGl~~GD~l~i~i~v~~ga~l~ltT 93 (286)
|+..|++|+....-|..||.+.+.++.+.+..+.++-
T Consensus 104 PGG~HvML~gL~~~l~~G~~v~lTL~Fe~~g~v~v~~ 140 (149)
T 1x9l_A 104 RDGDHVMLMGLKRPLKVGETVNITLKATDGRTLNVAA 140 (149)
T ss_dssp TTSSEEEEEEECSCCCTTEEEEEEECBTTTCCEEEEE
T ss_pred CCceEEEEeCCCCCCCCCCEEEEEEEECCCCeEEEEE
Confidence 4557999999999999999999999999887776643
No 5
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=18.03 E-value=2e+02 Score=18.66 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=25.4
Q ss_pred EEEEEc----cCCHHHHHHHHHHHHHHhhHhhCCCC
Q 038992 253 IVVRIA----AMTTESVYRFLQHQLAGMETLLGVSP 284 (286)
Q Consensus 253 lvvR~l----a~~~e~lr~~l~~~~~~lr~~lG~~p 284 (286)
+-|.+. |.+.+.-++..+.+-+.+...+|.+|
T Consensus 3 i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p~ 38 (67)
T 3m21_A 3 INIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNK 38 (67)
T ss_dssp EEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcCc
Confidence 556666 46778778888888889999999887
No 6
>1acx_A Actinoxanthin; antibacterial protein; 2.00A {Streptomyces globisporus} SCOP: b.1.7.1 PDB: 1hzk_A 1hzl_A* 1j48_A
Probab=17.78 E-value=2e+02 Score=21.68 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=25.9
Q ss_pred EEeccCcceecCcEEEEEEEEcCCcEEEEeC
Q 038992 63 YTLTYGGGIVSGDSISCEITVADACTAVLTT 93 (286)
Q Consensus 63 ~ll~~~GGl~~GD~l~i~i~v~~ga~l~ltT 93 (286)
+-++|+.||-.|+.+.+.. +-+|...+|.-
T Consensus 4 isvsPstGLsDgqtVtVs~-~t~g~~~~v~q 33 (108)
T 1acx_A 4 FSVSPASGASDGQSVSVSV-AAAGETYYIAQ 33 (108)
T ss_dssp EEEECCSSCCSSCEEEEEE-ESCCSEEEEEE
T ss_pred eEecCCCCCCCCCEEEEEE-ecCCCEEEEEE
Confidence 4578999999999999999 99998877764
No 7
>2xsk_A CSGC; chaperone; 1.70A {Escherichia coli} PDB: 2y2y_A 2y2t_A
Probab=15.12 E-value=87 Score=23.56 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=23.1
Q ss_pred eecCcEEEEEEEEcCCcEEEEeCcccce
Q 038992 71 IVSGDSISCEITVADACTAVLTTQASTK 98 (286)
Q Consensus 71 l~~GD~l~i~i~v~~ga~l~ltTQsatk 98 (286)
+.+||.+.|.|+|-+|-.++|+-|=..-
T Consensus 71 I~~~D~vkIiVTVSDG~slhLsqQw~~p 98 (110)
T 2xsk_A 71 ISPDDRVKIVVTVSDGQSLHLSQQWPPS 98 (110)
T ss_dssp CCTTCEEEEEEEEECSSSCEEEEEECC-
T ss_pred ecCCCcEEEEEEEeCCCeEEEEeccCCc
Confidence 5689999999999999999998764433
No 8
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=14.42 E-value=2.4e+02 Score=17.51 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=23.1
Q ss_pred EEEEEc-cCCHHHHHHHHHHHHHHhhHhhCCCC
Q 038992 253 IVVRIA-AMTTESVYRFLQHQLAGMETLLGVSP 284 (286)
Q Consensus 253 lvvR~l-a~~~e~lr~~l~~~~~~lr~~lG~~p 284 (286)
+-|.+. |.+.+.-++..+.+.+.+...+|.+|
T Consensus 3 i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~ 35 (61)
T 2opa_A 3 VTVKMLEGRTDEQKRNLVEKVTEAVKETTGASE 35 (61)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 445554 45666666777778888899999887
No 9
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=14.04 E-value=2.8e+02 Score=18.56 Aligned_cols=32 Identities=6% Similarity=-0.071 Sum_probs=24.6
Q ss_pred EEEEEc-cC-CHHHHHHHHHHHHHHhhHhhCCCC
Q 038992 253 IVVRIA-AM-TTESVYRFLQHQLAGMETLLGVSP 284 (286)
Q Consensus 253 lvvR~l-a~-~~e~lr~~l~~~~~~lr~~lG~~p 284 (286)
+-|.+. |. +.+.-++..+.+...+.+.+|.+|
T Consensus 3 I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgip~ 36 (76)
T 1gyx_A 3 IDIKCFPRELDEQQKAALAADITDVIIRHLNSKD 36 (76)
T ss_dssp EEEEESCCCCCHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCC
Confidence 445555 56 778788888888888999999876
No 10
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=13.88 E-value=2.9e+02 Score=18.22 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=24.6
Q ss_pred EEEEEc-cCCHHHHHHHHHHHHHHhhHhhCCCC
Q 038992 253 IVVRIA-AMTTESVYRFLQHQLAGMETLLGVSP 284 (286)
Q Consensus 253 lvvR~l-a~~~e~lr~~l~~~~~~lr~~lG~~p 284 (286)
+-|.+. |.+.+.-++..+.+-..+...+|.+|
T Consensus 4 I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~ 36 (72)
T 3mb2_A 4 LRITMLEGRSTEQKAELARALSAAAAAAFDVPL 36 (72)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 455555 56777777788888888999999887
Done!