Query 038992
Match_columns 286
No_of_seqs 132 out of 753
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 08:24:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038992.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038992hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x9la_ b.2.10.1 (A:) Hypothet 47.1 7.1 0.00052 29.4 3.5 37 57-93 104-140 (149)
2 d1stfi_ d.17.1.2 (I:) Cystatin 15.4 51 0.0037 22.7 2.9 35 64-104 40-74 (98)
3 d1zvya1 b.1.1.1 (A:2-125) Came 14.5 43 0.0031 24.1 2.4 41 62-106 1-42 (124)
4 d1indh1 b.1.1.1 (H:1-114) Immu 12.6 57 0.0041 23.1 2.5 23 62-84 2-25 (114)
5 d1rutx4 g.39.1.3 (X:114-146) L 12.4 42 0.003 18.2 1.2 10 70-79 8-17 (33)
6 d2fbjh1 b.1.1.1 (H:1-118) Immu 11.9 60 0.0044 23.1 2.4 23 62-84 2-25 (118)
7 d1bz7b1 b.1.1.1 (B:1-122) Immu 11.4 63 0.0046 23.1 2.4 41 62-106 2-43 (122)
8 d1nfdf1 b.1.1.1 (F:1-114) Immu 11.1 78 0.0057 22.6 2.9 23 62-84 2-25 (121)
9 d1otfa_ d.80.1.1 (A:) 4-oxaloc 10.9 1.2E+02 0.0087 18.0 3.5 32 254-285 4-36 (59)
10 d1s0ya_ d.80.1.1 (A:) Trans-3- 10.6 1.2E+02 0.009 18.2 3.5 28 258-285 9-36 (62)
No 1
>d1x9la_ b.2.10.1 (A:) Hypothetical protein DR1885 {Deinococcus radiodurans [TaxId: 1299]}
Probab=47.08 E-value=7.1 Score=29.44 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=32.7
Q ss_pred CCcEEEEEeccCcceecCcEEEEEEEEcCCcEEEEeC
Q 038992 57 TDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTT 93 (286)
Q Consensus 57 ~~~~~v~ll~~~GGl~~GD~l~i~i~v~~ga~l~ltT 93 (286)
|+..|++|++..--|..||.+.+.+..+.|..+.++-
T Consensus 104 PGG~HlML~gl~~~l~~Gd~v~ltL~f~~g~~i~v~~ 140 (149)
T d1x9la_ 104 RDGDHVMLMGLKRPLKVGETVNITLKATDGRTLNVAA 140 (149)
T ss_dssp TTSSEEEEEEECSCCCTTEEEEEEECBTTTCCEEEEE
T ss_pred CCceEEEEcCCCCCCCCCCEEEEEEEECCCCEEEEEE
Confidence 4668999999999999999999999999998887753
No 2
>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.36 E-value=51 Score=22.72 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=29.7
Q ss_pred EeccCcceecCcEEEEEEEEcCCcEEEEeCcccceeecCCC
Q 038992 64 TLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLG 104 (286)
Q Consensus 64 ll~~~GGl~~GD~l~i~i~v~~ga~l~ltTQsatkvy~~~~ 104 (286)
.+++.-=+|+|=.+-|.|+|+.|..+++ |||++..
T Consensus 40 av~yktQvVaG~NYfIKV~vg~~~~~Hl------rV~~~Lp 74 (98)
T d1stfi_ 40 AVSFKSQVVAGTNYFIKVHVGDEDFVHL------RVFQSLP 74 (98)
T ss_dssp EEEEEEEESSEEEEEEEEECSSSCEEEE------EEEEECG
T ss_pred EEEEEEEEEcceeEEEEEEeCCCcEEEE------EEeccCC
Confidence 4556667899999999999999999998 9999854
No 3
>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}
Probab=14.54 E-value=43 Score=24.11 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=26.7
Q ss_pred EEEeccCccee-cCcEEEEEEEEcCCcEEEEeCcccceeecCCCCC
Q 038992 62 VYTLTYGGGIV-SGDSISCEITVADACTAVLTTQASTKVYKSLGSK 106 (286)
Q Consensus 62 v~ll~~~GGl~-~GD~l~i~i~v~~ga~l~ltTQsatkvy~~~~~~ 106 (286)
|-|+-+|||++ +|+.+.|.+++- |- -.|..+.-+||...++
T Consensus 1 VqL~esG~~lvkpg~sl~LsC~~S-G~---~~~~~~~~WvRQ~PGk 42 (124)
T d1zvya1 1 VQLVESGGGSVQAGGSLRLSCAAS-GS---TDSIEYMTWFRQAPGK 42 (124)
T ss_dssp CEEEEECCEECCTTCCEEEEEEEE-SC---STTCCEEEEEEECTTS
T ss_pred CceeeECCceECCCCCeEEEEEEc-Cc---ccccccccccccCCcc
Confidence 34788899999 799999999874 21 1222344566655443
No 4
>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}
Probab=12.59 E-value=57 Score=23.08 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEeccCccee-cCcEEEEEEEEc
Q 038992 62 VYTLTYGGGIV-SGDSISCEITVA 84 (286)
Q Consensus 62 v~ll~~~GGl~-~GD~l~i~i~v~ 84 (286)
|-|+-+|||++ +|+.+.|.+.+-
T Consensus 2 VqL~eSG~~~vkpG~sl~LsC~~S 25 (114)
T d1indh1 2 VTLVESGGDSVKPGGSLKLSCAAS 25 (114)
T ss_dssp CEEEEECCCEECTTCCEEEEEEEE
T ss_pred CeEeeECCceECCCCCEEEEEEEC
Confidence 45788899999 999999999874
No 5
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.36 E-value=42 Score=18.20 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=7.1
Q ss_pred ceecCcEEEE
Q 038992 70 GIVSGDSISC 79 (286)
Q Consensus 70 Gl~~GD~l~i 79 (286)
-||+||+++.
T Consensus 8 ~LVPGDRFHy 17 (33)
T d1rutx4 8 RLVPGDRFHY 17 (33)
T ss_dssp BCCTTCEEEE
T ss_pred cccCCceeEE
Confidence 3678888764
No 6
>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}
Probab=11.88 E-value=60 Score=23.08 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=19.2
Q ss_pred EEEeccCccee-cCcEEEEEEEEc
Q 038992 62 VYTLTYGGGIV-SGDSISCEITVA 84 (286)
Q Consensus 62 v~ll~~~GGl~-~GD~l~i~i~v~ 84 (286)
|-|+-+|||++ +|+.+.|.+++-
T Consensus 2 VqL~eSG~~~vkpg~sl~LsC~~S 25 (118)
T d2fbjh1 2 VKLLESGGGLVQPGGSLKLSCAAS 25 (118)
T ss_dssp CEEEEECCEEECTTCCEEEEEEEE
T ss_pred ceEeeECCceECCCCCEEEEEEEC
Confidence 45788899998 699999999874
No 7
>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}
Probab=11.40 E-value=63 Score=23.07 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=26.3
Q ss_pred EEEeccCccee-cCcEEEEEEEEcCCcEEEEeCcccceeecCCCCC
Q 038992 62 VYTLTYGGGIV-SGDSISCEITVADACTAVLTTQASTKVYKSLGSK 106 (286)
Q Consensus 62 v~ll~~~GGl~-~GD~l~i~i~v~~ga~l~ltTQsatkvy~~~~~~ 106 (286)
|-|+-.|||++ +|+.+.|.+++- |-. + +--.--+||...++
T Consensus 2 V~L~esG~~lvkPg~sl~LsC~~S-G~s--~-s~y~~~WvRQ~PGk 43 (122)
T d1bz7b1 2 VQLVESGGGLVQPGGSRKLSCAAS-GFT--F-SNFGMHWVRQAPEK 43 (122)
T ss_dssp CEEEEECCEEECTTCCEEEEEEEE-SSC--G-GGSCEEEEEECSSS
T ss_pred ceEeeECCceECCCCCeEEEEEEc-CCC--C-cCCceEccccCCCc
Confidence 45778899987 699999999875 321 2 22344555554443
No 8
>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=11.12 E-value=78 Score=22.55 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=19.3
Q ss_pred EEEeccCccee-cCcEEEEEEEEc
Q 038992 62 VYTLTYGGGIV-SGDSISCEITVA 84 (286)
Q Consensus 62 v~ll~~~GGl~-~GD~l~i~i~v~ 84 (286)
|.|+-++||++ +|+.+.|.+++-
T Consensus 2 V~L~eSG~~~vkPG~sl~LsC~~S 25 (121)
T d1nfdf1 2 VYLVESGGDLVQPGSSLKVSCAAS 25 (121)
T ss_dssp CEEEEECCEEECTTCEEEEEEEEE
T ss_pred CeEeeECCceECCCCCEEEEEEEc
Confidence 56788888888 899999999875
No 9
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=10.93 E-value=1.2e+02 Score=18.01 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=22.6
Q ss_pred EEEEc-cCCHHHHHHHHHHHHHHhhHhhCCCCC
Q 038992 254 VVRIA-AMTTESVYRFLQHQLAGMETLLGVSPY 285 (286)
Q Consensus 254 vvR~l-a~~~e~lr~~l~~~~~~lr~~lG~~py 285 (286)
-|.++ |.+.+.-+++.+.+-..+...+|.+|-
T Consensus 4 ~i~~~~Grs~eqK~~l~~~it~~~~~~~g~~~~ 36 (59)
T d1otfa_ 4 QLYIIEGRTDEQKETLIRQVSEAMANSLDAPLE 36 (59)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 34444 466666677777788888889998873
No 10
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=10.64 E-value=1.2e+02 Score=18.18 Aligned_cols=28 Identities=14% Similarity=-0.031 Sum_probs=22.2
Q ss_pred ccCCHHHHHHHHHHHHHHhhHhhCCCCC
Q 038992 258 AAMTTESVYRFLQHQLAGMETLLGVSPY 285 (286)
Q Consensus 258 la~~~e~lr~~l~~~~~~lr~~lG~~py 285 (286)
-|.+.+.-+++.+.+-+.+...+|.+|-
T Consensus 9 ~Grt~eqK~~l~~~it~~~~~~~g~~~e 36 (62)
T d1s0ya_ 9 YGRTDEQKRALSAGLLRVISEATGEPRE 36 (62)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 4567777777888888889999998873
Done!