Query 038993
Match_columns 327
No_of_seqs 188 out of 1380
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 2.3E-29 5E-34 218.3 21.7 206 97-323 1-229 (230)
2 PF07734 FBA_1: F-box associat 99.7 1.4E-15 3E-20 124.7 14.8 100 192-298 1-103 (164)
3 PF08268 FBA_3: F-box associat 99.7 3.5E-15 7.7E-20 117.4 13.8 94 192-292 1-94 (129)
4 PLN03215 ascorbic acid mannose 99.2 3.6E-09 7.9E-14 96.1 20.4 256 1-289 1-305 (373)
5 PF12937 F-box-like: F-box-lik 99.0 1.5E-10 3.2E-15 74.0 2.2 44 4-47 1-44 (47)
6 PHA02713 hypothetical protein; 98.9 1.7E-07 3.7E-12 91.4 19.3 188 113-323 320-534 (557)
7 PF00646 F-box: F-box domain; 98.8 7E-10 1.5E-14 71.2 0.1 45 4-48 3-47 (48)
8 smart00256 FBOX A Receptor for 98.8 2.1E-09 4.6E-14 66.3 1.2 39 7-45 1-39 (41)
9 KOG4441 Proteins containing BT 98.6 1.2E-06 2.6E-11 85.5 16.3 204 96-323 327-547 (571)
10 PHA03098 kelch-like protein; P 98.6 2.3E-06 5E-11 83.5 17.2 191 113-324 311-513 (534)
11 PHA02713 hypothetical protein; 98.5 5E-06 1.1E-10 81.2 16.2 190 114-323 273-489 (557)
12 KOG4441 Proteins containing BT 98.5 6.3E-06 1.4E-10 80.5 16.7 168 95-287 374-555 (571)
13 PHA02790 Kelch-like protein; P 98.5 7.2E-06 1.6E-10 78.8 16.8 177 113-323 287-471 (480)
14 PHA02790 Kelch-like protein; P 98.4 9.7E-06 2.1E-10 77.9 16.7 137 97-261 314-457 (480)
15 PHA03098 kelch-like protein; P 98.3 5.8E-05 1.3E-09 73.7 18.0 169 97-287 338-520 (534)
16 TIGR03547 muta_rot_YjhT mutatr 98.2 0.00015 3.2E-09 66.7 18.2 163 113-291 29-240 (346)
17 PLN02153 epithiospecifier prot 98.2 0.00018 3.8E-09 66.1 18.7 163 113-291 101-297 (341)
18 PRK14131 N-acetylneuraminic ac 98.1 0.0003 6.4E-09 65.6 18.0 177 98-290 35-260 (376)
19 PLN02193 nitrile-specifier pro 98.0 0.00066 1.4E-08 65.2 19.6 158 113-288 193-361 (470)
20 PLN02153 epithiospecifier prot 98.0 0.00084 1.8E-08 61.6 18.9 159 113-288 50-235 (341)
21 PLN02193 nitrile-specifier pro 98.0 0.0011 2.3E-08 63.8 20.1 158 113-289 244-421 (470)
22 TIGR03548 mutarot_permut cycli 98.0 0.00059 1.3E-08 62.2 17.1 136 113-260 88-233 (323)
23 TIGR03548 mutarot_permut cycli 97.9 0.00099 2.2E-08 60.7 17.9 152 114-288 40-204 (323)
24 PRK14131 N-acetylneuraminic ac 97.9 0.0028 6.2E-08 59.0 21.0 148 113-275 189-367 (376)
25 TIGR03547 muta_rot_YjhT mutatr 97.7 0.0026 5.6E-08 58.5 16.3 133 113-261 168-332 (346)
26 KOG4693 Uncharacterized conser 97.6 0.00059 1.3E-08 58.6 10.3 159 113-286 105-284 (392)
27 KOG2120 SCF ubiquitin ligase, 97.4 4.7E-05 1E-09 66.6 1.3 42 4-45 98-139 (419)
28 KOG2997 F-box protein FBX9 [Ge 96.6 0.00079 1.7E-08 59.2 1.2 46 4-49 107-157 (366)
29 KOG0281 Beta-TrCP (transducin 96.6 0.00085 1.8E-08 59.5 1.2 46 4-49 75-124 (499)
30 PF07762 DUF1618: Protein of u 96.1 0.062 1.3E-06 42.0 9.1 86 212-298 7-106 (131)
31 KOG4693 Uncharacterized conser 95.4 0.19 4E-06 43.7 9.8 136 112-261 156-313 (392)
32 KOG0379 Kelch repeat-containin 95.1 2.8 6.1E-05 40.5 18.3 162 113-289 139-312 (482)
33 KOG1230 Protein containing rep 94.8 1.8 3.8E-05 40.1 14.7 175 113-296 98-298 (521)
34 PF13964 Kelch_6: Kelch motif 94.7 0.062 1.3E-06 34.1 4.0 39 191-229 6-47 (50)
35 PF07893 DUF1668: Protein of u 94.5 3.9 8.4E-05 37.6 18.2 139 112-261 85-254 (342)
36 KOG1230 Protein containing rep 93.9 1.5 3.3E-05 40.6 12.4 118 162-287 97-224 (521)
37 PF01344 Kelch_1: Kelch motif; 93.1 0.25 5.4E-06 30.6 4.6 39 191-229 6-47 (47)
38 KOG0274 Cdc4 and related F-box 92.6 11 0.00024 36.9 17.5 44 4-47 108-151 (537)
39 KOG0379 Kelch repeat-containin 92.5 1.4 3.1E-05 42.5 10.9 156 114-285 89-256 (482)
40 COG4257 Vgb Streptogramin lyas 90.4 2.9 6.4E-05 36.7 9.4 118 96-232 194-318 (353)
41 PF13964 Kelch_6: Kelch motif 89.8 0.82 1.8E-05 28.8 4.4 25 159-183 24-48 (50)
42 PF07646 Kelch_2: Kelch motif; 89.8 0.89 1.9E-05 28.5 4.6 38 191-228 6-47 (49)
43 PF01344 Kelch_1: Kelch motif; 87.8 1 2.2E-05 27.7 3.8 34 147-182 14-47 (47)
44 smart00612 Kelch Kelch domain. 86.6 1.8 4E-05 26.2 4.5 25 160-184 12-36 (47)
45 PF13418 Kelch_4: Galactose ox 83.9 1.8 3.9E-05 27.0 3.5 35 192-226 7-44 (49)
46 KOG4341 F-box protein containi 83.6 0.45 9.9E-06 44.1 0.8 38 5-42 73-110 (483)
47 PF07893 DUF1668: Protein of u 82.2 35 0.00075 31.4 12.5 85 164-259 200-297 (342)
48 COG3055 Uncharacterized protei 78.2 11 0.00023 34.5 7.4 119 162-291 112-268 (381)
49 PF07646 Kelch_2: Kelch motif; 76.5 5 0.00011 25.0 3.7 26 157-182 24-49 (49)
50 PLN02772 guanylate kinase 74.5 18 0.0004 33.8 8.2 74 190-275 28-107 (398)
51 PF13418 Kelch_4: Galactose ox 71.6 4.3 9.3E-05 25.2 2.5 23 160-182 26-48 (49)
52 PF13415 Kelch_3: Galactose ox 69.6 12 0.00026 23.2 4.2 25 159-183 15-39 (49)
53 PF02191 OLF: Olfactomedin-lik 63.2 1E+02 0.0023 26.9 10.2 77 189-275 71-155 (250)
54 smart00284 OLF Olfactomedin-li 60.4 95 0.0021 27.2 9.3 77 189-275 76-160 (255)
55 COG3055 Uncharacterized protei 57.8 1.2E+02 0.0025 28.0 9.5 158 66-232 57-269 (381)
56 KOG3926 F-box proteins [Amino 52.4 9.2 0.0002 33.5 1.7 47 3-49 201-248 (332)
57 PF13570 PQQ_3: PQQ-like domai 51.7 23 0.0005 20.8 3.0 26 190-220 15-40 (40)
58 PF13013 F-box-like_2: F-box-l 49.9 7.5 0.00016 29.2 0.7 29 4-32 22-50 (109)
59 KOG0316 Conserved WD40 repeat- 48.4 1.9E+02 0.004 25.3 11.7 108 100-229 27-141 (307)
60 PF12458 DUF3686: ATPase invol 47.7 1.5E+02 0.0034 27.9 8.9 62 198-273 321-383 (448)
61 KOG2502 Tub family proteins [G 44.5 13 0.00029 33.7 1.6 38 3-40 44-89 (355)
62 PF12768 Rax2: Cortical protei 44.4 75 0.0016 28.3 6.3 66 159-228 12-81 (281)
63 smart00564 PQQ beta-propeller 42.8 52 0.0011 18.0 3.5 25 193-222 3-27 (33)
64 PRK11028 6-phosphogluconolacto 42.4 2.5E+02 0.0055 25.1 14.4 147 159-326 8-160 (330)
65 KOG0289 mRNA splicing factor [ 42.0 3.1E+02 0.0068 26.0 18.1 110 160-292 366-476 (506)
66 PF08450 SGL: SMP-30/Gluconola 37.6 1E+02 0.0023 26.3 6.2 47 196-257 11-58 (246)
67 PF06433 Me-amine-dh_H: Methyl 36.8 1.5E+02 0.0033 27.1 7.1 119 196-323 195-321 (342)
68 PF13859 BNR_3: BNR repeat-lik 34.5 2.7E+02 0.0059 25.2 8.4 125 147-284 72-211 (310)
69 PF06881 Elongin_A: RNA polyme 33.8 36 0.00079 25.4 2.3 30 2-31 2-31 (109)
70 PF07250 Glyoxal_oxid_N: Glyox 33.2 3.3E+02 0.0071 23.7 8.7 99 161-272 44-146 (243)
71 PTZ00334 trans-sialidase; Prov 31.0 3E+02 0.0065 28.4 8.7 83 190-284 263-348 (780)
72 KOG2055 WD40 repeat protein [G 31.0 4.8E+02 0.011 25.0 9.4 36 193-232 265-301 (514)
73 PF15408 PH_7: Pleckstrin homo 27.5 17 0.00037 25.8 -0.4 25 21-45 76-100 (104)
74 KOG1963 WD40 repeat protein [G 27.1 4.9E+02 0.011 26.9 9.3 99 212-323 433-539 (792)
75 PF10282 Lactonase: Lactonase, 25.9 5E+02 0.011 23.5 12.5 114 161-290 164-289 (345)
76 PF13088 BNR_2: BNR repeat-lik 25.3 4.4E+02 0.0095 22.6 12.5 116 163-292 133-256 (275)
77 COG2706 3-carboxymuconate cycl 24.9 5.5E+02 0.012 23.6 16.3 108 160-277 164-277 (346)
78 PF07370 DUF1489: Protein of u 23.9 49 0.0011 25.9 1.5 29 192-220 43-71 (137)
79 cd00260 Sialidase Sialidases o 22.7 5.7E+02 0.012 23.0 14.3 88 191-288 150-241 (351)
80 PF03088 Str_synth: Strictosid 22.4 2.2E+02 0.0048 20.4 4.6 30 197-226 10-52 (89)
81 KOG1310 WD40 repeat protein [G 22.2 5.5E+02 0.012 25.4 8.2 107 99-220 59-179 (758)
82 PF14298 DUF4374: Domain of un 21.9 6.4E+02 0.014 24.1 8.6 64 160-223 364-428 (435)
83 PF05096 Glu_cyclase_2: Glutam 21.1 5.8E+02 0.013 22.5 10.6 102 195-325 54-160 (264)
84 TIGR01640 F_box_assoc_1 F-box 20.7 5.1E+02 0.011 21.7 10.1 32 194-231 3-34 (230)
85 PF10660 MitoNEET_N: Iron-cont 20.5 33 0.00073 23.0 0.0 38 1-38 1-40 (64)
86 KOG4152 Host cell transcriptio 20.3 7.2E+02 0.016 24.4 8.5 163 113-295 57-255 (830)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.97 E-value=2.3e-29 Score=218.30 Aligned_cols=206 Identities=24% Similarity=0.353 Sum_probs=142.1
Q ss_pred EeccCCcEEeeecCCCCEEEEEcCCccccceeeccccCCCCCC-----C--ceEEEE-------EEEEEEEeCCCCCCCc
Q 038993 97 VGCCNGLLCIATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKR-----L--VAFFMG-------LVRIARRSGDACFGGA 162 (327)
Q Consensus 97 ~~sc~GLlcl~~~~~~~~~~V~N~~~P~T~~~~~~~LP~~~~~-----~--~~~gfg-------vv~v~~~~~~~~~~~~ 162 (327)
++|||||||+.. ...++||| |+||+++ .||+++.. . ..+||+ ||++.... .....
T Consensus 1 ~~sCnGLlc~~~---~~~~~V~N---P~T~~~~--~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~---~~~~~ 69 (230)
T TIGR01640 1 VVPCDGLICFSY---GKRLVVWN---PSTGQSR--WLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS---GNRNQ 69 (230)
T ss_pred CcccceEEEEec---CCcEEEEC---CCCCCEE--ecCCCCCcccccccceEEEeecccCCcEEEEEEEeec---CCCCC
Confidence 479999999886 37899999 9999999 99877642 1 124443 55554321 12246
Q ss_pred cEEEEEEcCCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecCCCc-cEEEEEeCCCceee-eecCCCCCCcCCccee
Q 038993 163 AEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRH-DFILALDLSDEAYK-ELPLPPPVLLETGCRV 240 (327)
Q Consensus 163 ~~~~Vys~~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~il~fD~~~e~~~-~i~lP~~~~~~~~~~~ 240 (327)
..++||++++++||.+...+.... ....+|++||++||++....... ..|++||+++|+|+ .+++|.... ......
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~~~~~~-~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~-~~~~~~ 147 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECSPPHHP-LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNS-DSVDYL 147 (230)
T ss_pred ccEEEEEeCCCCccccccCCCCcc-ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccc-ccccce
Confidence 789999999999999975443322 22349999999999997653122 37999999999999 589987542 111234
Q ss_pred eccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCCc------ccCCCcccccccCC-C
Q 038993 241 RANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSP------EFYDYSLPFESLEP-P 313 (327)
Q Consensus 241 ~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~-~ 313 (327)
.|++++ |+||++.....+ ..++||+|++++. ++|+|+++|+......... ...+..+.+...+. +
T Consensus 148 ---~L~~~~-G~L~~v~~~~~~---~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~ 219 (230)
T TIGR01640 148 ---SLINYK-GKLAVLKQKKDT---NNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENP 219 (230)
T ss_pred ---EEEEEC-CEEEEEEecCCC---CcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCc
Confidence 899999 999999886542 2699999999875 5699999998743332211 11222233332222 3
Q ss_pred ceEEEEecCC
Q 038993 314 SLLRGWHPTS 323 (327)
Q Consensus 314 ~~~~~~~~~~ 323 (327)
..+++|||.+
T Consensus 220 ~~~~~y~~~~ 229 (230)
T TIGR01640 220 FYIFYYNVGE 229 (230)
T ss_pred eEEEEEeccC
Confidence 4488888875
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.68 E-value=1.4e-15 Score=124.72 Aligned_cols=100 Identities=38% Similarity=0.700 Sum_probs=76.4
Q ss_pred eeeeCCcEEEEEeecCCCc-cEEEEEeCCCcee-eeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEE
Q 038993 192 GVYASGSLHWIVMAEYGRH-DFILALDLSDEAY-KELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSH 269 (327)
Q Consensus 192 ~v~~~G~lywl~~~~~~~~-~~il~fD~~~e~~-~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~ 269 (327)
+|++||++||++....... ..|++||+++|+| +.+++|.... ...... .|.++.+|+||++.....+ ..++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~-~~~~~~---~L~~v~~~~L~~~~~~~~~---~~~~ 73 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCND-DDDDSV---SLSVVRGDCLCVLYQCDET---SKIE 73 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccC-ccCCEE---EEEEecCCEEEEEEeccCC---ccEE
Confidence 5899999999998875222 2899999999999 8889998764 122234 7766654899999764442 3799
Q ss_pred EEEEeeCCC-CCCeEEEEEEcCCCCCCCCc
Q 038993 270 VWVMTEYGV-KDSWTKLFSILEEQVISPSP 298 (327)
Q Consensus 270 iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~ 298 (327)
||+|+++|. .++|+|.++|++........
T Consensus 74 IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~ 103 (164)
T PF07734_consen 74 IWVMKKYGYGKESWTKLFTIDLPPLPSLFF 103 (164)
T ss_pred EEEEeeeccCcceEEEEEEEecCCCCCccc
Confidence 999998753 68999999999877666543
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.65 E-value=3.5e-15 Score=117.36 Aligned_cols=94 Identities=26% Similarity=0.535 Sum_probs=73.4
Q ss_pred eeeeCCcEEEEEeecCCCccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEE
Q 038993 192 GVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVW 271 (327)
Q Consensus 192 ~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW 271 (327)
|+++||.+||++.........|++||+++|+|+.|++|.... ...... .|++++ |+||++....... ...++||
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~-~~~~~~---~L~~~~-G~L~~v~~~~~~~-~~~~~iW 74 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPY-SSDCSS---TLIEYK-GKLALVSYNDQGE-PDSIDIW 74 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeec-cccCcc---EEEEeC-CeEEEEEecCCCC-cceEEEE
Confidence 589999999999984455679999999999999999992221 222344 899999 9999998876531 3479999
Q ss_pred EEeeCCCCCCeEEEEEEcCCC
Q 038993 272 VMTEYGVKDSWTKLFSILEEQ 292 (327)
Q Consensus 272 ~l~~~~~~~~W~~~~~i~~~~ 292 (327)
+|+|++ +++|+|++.+-...
T Consensus 75 vLeD~~-k~~Wsk~~~~lp~~ 94 (129)
T PF08268_consen 75 VLEDYE-KQEWSKKHIVLPPS 94 (129)
T ss_pred Eeeccc-cceEEEEEEECChH
Confidence 999987 58999887754443
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.20 E-value=3.6e-09 Score=96.06 Aligned_cols=256 Identities=13% Similarity=0.093 Sum_probs=131.0
Q ss_pred CCCCCCCcHHHHHHHHhcCC-cchhhhheeccccchhhcCChhhHHHHhhccCCCCceEEEeec-CCCCeeEecccCCCc
Q 038993 1 MDDRDPLPLHIIDDILSRLH-VKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGL-GSTDTLYEEKYENGC 78 (327)
Q Consensus 1 m~~~~~LP~Dll~eIL~rLP-~ksl~r~r~VcK~W~~li~~~~F~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~ 78 (327)
|++++.||+||+..|..||| .-+++|||+|||+||+.+.... + .....+.+.+++... +.. .+.+.+....
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 73 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K--KNPFRTRPLILFNPINPSE-TLTDDRSYIS- 73 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c--cCCcccccccccCcccCCC-Cccccccccc-
Confidence 89999999999999999998 6699999999999999877421 0 000011122222110 000 0000000000
Q ss_pred ccccccCCCCCCCCceEE---EeccCCcEEeeecC-CCCEEEEEcCCccccceeeccccCCCCCC---C-------ce-E
Q 038993 79 IATKLDHPWMDSKQWIEV---VGCCNGLLCIATNR-LPQTLAIWTHLRESTAFYRRQRLPWIPKR---L-------VA-F 143 (327)
Q Consensus 79 ~~~~~~~p~~~~~~~~~~---~~sc~GLlcl~~~~-~~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~-------~~-~ 143 (327)
.....+.. ..-+++ .++..|.|...... ..+.+.+.| |+++.-. .+|+...+ + .+ +
T Consensus 74 ---~~~~~ls~-~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~---PLsr~~~--~~~~~~lnll~f~v~ei~~~y~l 144 (373)
T PLN03215 74 ---RPGAFLSR-AAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLN---PLSRLPL--RHSSESVDLLEFTVSEIREAYQV 144 (373)
T ss_pred ---cccceeee-eEEEEeecCCCCCCCcEEEEeccccCCccEecC---ccccCcc--CCCCccceeeeeEEEEccceEEE
Confidence 00000000 000111 13457888765432 457889999 9999988 88754333 1 01 0
Q ss_pred -E----------EEEEEEEEEeCCCCCCCccEEEEEEcC------CCceEEcCCCCCceecCCCCeeeeCCcEEEEEeec
Q 038993 144 -F----------MGLVRIARRSGDACFGGAAEVKVYSLA------RNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAE 206 (327)
Q Consensus 144 -g----------fgvv~v~~~~~~~~~~~~~~~~Vys~~------~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~ 206 (327)
+ |..+.++... ..+.....-+.|+.-+ .++|..++.... ....-++.+|.+|-+...+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~~----~~~DIi~~kGkfYAvD~~G 219 (373)
T PLN03215 145 LDWAKRRETRPGYQRSALVKVK-EGDNHRDGVLGIGRDGKINYWDGNVLKALKQMGY----HFSDIIVHKGQTYALDSIG 219 (373)
T ss_pred EecccccccccceeEEEEEEee-cCCCcceEEEEEeecCcEeeecCCeeeEccCCCc----eeeEEEEECCEEEEEcCCC
Confidence 1 1101111111 1111111222333222 356776653221 1223688999999986544
Q ss_pred CCCccEEEEEeCCCceeeeecC--CCCCCcCC-cceeeccEEEEeCCCcEEEEEecCCCc------------CCCeEEEE
Q 038993 207 YGRHDFILALDLSDEAYKELPL--PPPVLLET-GCRVRANYFGVLDNGCLCLVSNYGGGY------------RTPLSHVW 271 (327)
Q Consensus 207 ~~~~~~il~fD~~~e~~~~i~l--P~~~~~~~-~~~~~~~~l~~~~~g~L~~~~~~~~~~------------~~~~l~iW 271 (327)
.+.++|.+-+ -+.+.. ........ .... .|+++. |.|.+|....... ....++|+
T Consensus 220 -----~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~---yLVEs~-GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vf 289 (373)
T PLN03215 220 -----IVYWINSDLE-FSRFGTSLDENITDGCWTGDR---RFVECC-GELYIVERLPKESTWKRKADGFEYSRTVGFKVY 289 (373)
T ss_pred -----eEEEEecCCc-eeeecceecccccCCcccCce---eEEEEC-CEEEEEEEEccCcccccccccccccceeEEEEE
Confidence 4667774321 122211 11110000 1123 899999 9999998743210 13478999
Q ss_pred EEeeCCCCCCeEEEEEEc
Q 038993 272 VMTEYGVKDSWTKLFSIL 289 (327)
Q Consensus 272 ~l~~~~~~~~W~~~~~i~ 289 (327)
.++.. ..+|+++.+++
T Consensus 290 klD~~--~~~WveV~sLg 305 (373)
T PLN03215 290 KFDDE--LAKWMEVKTLG 305 (373)
T ss_pred EEcCC--CCcEEEecccC
Confidence 99753 46899988875
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.01 E-value=1.5e-10 Score=73.96 Aligned_cols=44 Identities=30% Similarity=0.510 Sum_probs=38.0
Q ss_pred CCCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChhhHHHH
Q 038993 4 RDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQ 47 (327)
Q Consensus 4 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~ 47 (327)
+..||+|++.+||..||++++.++.+|||+|++++.++.+.+..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~ 44 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRL 44 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhh
Confidence 56899999999999999999999999999999999988766553
No 6
>PHA02713 hypothetical protein; Provisional
Probab=98.88 E-value=1.7e-07 Score=91.43 Aligned_cols=188 Identities=10% Similarity=0.090 Sum_probs=118.8
Q ss_pred CEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCceec
Q 038993 113 QTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIA 187 (327)
Q Consensus 113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~~ 187 (327)
..+..+| |.+.+|. .+|+++.. .....++ +|.+.+. ++......+++|+..+++|..++.+|....
T Consensus 320 ~~v~~Yd---~~~n~W~--~~~~m~~~R~~~~~~~~~g~IYviGG~---~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~- 390 (557)
T PHA02713 320 NKVYKIN---IENKIHV--ELPPMIKNRCRFSLAVIDDTIYAIGGQ---NGTNVERTIECYTMGDDKWKMLPDMPIALS- 390 (557)
T ss_pred ceEEEEE---CCCCeEe--eCCCCcchhhceeEEEECCEEEEECCc---CCCCCCceEEEEECCCCeEEECCCCCcccc-
Confidence 4678999 9999999 99988754 1222232 6666542 222345679999999999999988775442
Q ss_pred CCCCeeeeCCcEEEEEeecCC-------------------CccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEE
Q 038993 188 RDSPGVYASGSLHWIVMAEYG-------------------RHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGV 247 (327)
Q Consensus 188 ~~~~~v~~~G~lywl~~~~~~-------------------~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~ 247 (327)
....+.++|.+|.+++.... ....+.+||+++++|+.+ ++|... ... .+++
T Consensus 391 -~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-----~~~---~~~~ 461 (557)
T PHA02713 391 -SYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-----IRP---GVVS 461 (557)
T ss_pred -cccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc-----ccC---cEEE
Confidence 23467889999999875421 124689999999999987 444332 122 5678
Q ss_pred eCCCcEEEEEecCCCcCCCeEEEEEEeeCCC-C-CCeEEEEEEcCCCCCCCCcccCCCcccccccCCCceEEEEecCC
Q 038993 248 LDNGCLCLVSNYGGGYRTPLSHVWVMTEYGV-K-DSWTKLFSILEEQVISPSPEFYDYSLPFESLEPPSLLRGWHPTS 323 (327)
Q Consensus 248 ~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~-~-~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (327)
++ |+|++++...+.. .... ..+-|.. . ++|+....++.+..........+.+..+-..+....+--|||++
T Consensus 462 ~~-~~IYv~GG~~~~~--~~~~--~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 462 HK-DDIYVVCDIKDEK--NVKT--CIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred EC-CEEEEEeCCCCCC--ccce--eEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCccc
Confidence 88 9999998754321 0111 1233332 2 47999887766554433344444444443333333455666654
No 7
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.82 E-value=7e-10 Score=71.17 Aligned_cols=45 Identities=47% Similarity=0.710 Sum_probs=38.2
Q ss_pred CCCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChhhHHHHh
Q 038993 4 RDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQL 48 (327)
Q Consensus 4 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~~ 48 (327)
+..||+|++.+||.+||.+++++++.|||+|++++.++.+...+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 457999999999999999999999999999999999998876653
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.77 E-value=2.1e-09 Score=66.32 Aligned_cols=39 Identities=56% Similarity=0.880 Sum_probs=37.0
Q ss_pred CcHHHHHHHHhcCCcchhhhheeccccchhhcCChhhHH
Q 038993 7 LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIK 45 (327)
Q Consensus 7 LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~ 45 (327)
||+|++.+||.+|+++++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988764
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.64 E-value=1.2e-06 Score=85.49 Aligned_cols=204 Identities=13% Similarity=0.160 Sum_probs=128.4
Q ss_pred EEeccCCcEEeeecC-----CCCEEEEEcCCccccceeeccccCCCCCCCceEEE---E--EEEEEEEeCCCCCCCccEE
Q 038993 96 VVGCCNGLLCIATNR-----LPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFM---G--LVRIARRSGDACFGGAAEV 165 (327)
Q Consensus 96 ~~~sc~GLlcl~~~~-----~~~~~~V~N~~~P~T~~~~~~~LP~~~~~~~~~gf---g--vv~v~~~~~~~~~~~~~~~ 165 (327)
-++..+|.|-..... ....+..+| |-+.+|. .+|++......+|- + +|.+.++ ++......+
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD---~~~~~W~--~~a~M~~~R~~~~v~~l~g~iYavGG~---dg~~~l~sv 398 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYD---PRTNQWT--PVAPMNTKRSDFGVAVLDGKLYAVGGF---DGEKSLNSV 398 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEec---CCCCcee--ccCCccCccccceeEEECCEEEEEecc---ccccccccE
Confidence 445556655443321 235689999 9999999 99998765111111 1 6666654 345667799
Q ss_pred EEEEcCCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecC-C-CccEEEEEeCCCceeeee-cCCCCCCcCCcceeec
Q 038993 166 KVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEY-G-RHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRA 242 (327)
Q Consensus 166 ~Vys~~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~-~-~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~ 242 (327)
|.|+..++.|..++.++... .....+.++|.+|-+++... . ....+.+||+.+++|+.+ +++... ...
T Consensus 399 E~YDp~~~~W~~va~m~~~r--~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-----~~~-- 469 (571)
T KOG4441|consen 399 ECYDPVTNKWTPVAPMLTRR--SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR-----SGF-- 469 (571)
T ss_pred EEecCCCCcccccCCCCcce--eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc-----ccc--
Confidence 99999999999998777622 22336788999999998664 2 347899999999999987 444432 223
Q ss_pred cEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCC-CCCCeEEEEEEcCCCCCCCCcccCCCccc---ccccCCCceEEE
Q 038993 243 NYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYG-VKDSWTKLFSILEEQVISPSPEFYDYSLP---FESLEPPSLLRG 318 (327)
Q Consensus 243 ~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 318 (327)
.+++++ |+|++++..++...... .+-|. ....|+....+....-..-.....+.... +...+.-..+-.
T Consensus 470 -g~a~~~-~~iYvvGG~~~~~~~~~-----VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ 542 (571)
T KOG4441|consen 470 -GVAVLN-GKIYVVGGFDGTSALSS-----VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVEC 542 (571)
T ss_pred -eEEEEC-CEEEEECCccCCCccce-----EEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEE
Confidence 678889 99999998876321222 23222 24689998555444332222222222111 222334556666
Q ss_pred EecCC
Q 038993 319 WHPTS 323 (327)
Q Consensus 319 ~~~~~ 323 (327)
|||++
T Consensus 543 ydp~~ 547 (571)
T KOG4441|consen 543 YDPET 547 (571)
T ss_pred cCCCC
Confidence 77765
No 10
>PHA03098 kelch-like protein; Provisional
Probab=98.60 E-value=2.3e-06 Score=83.45 Aligned_cols=191 Identities=10% Similarity=0.016 Sum_probs=114.9
Q ss_pred CEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCceec
Q 038993 113 QTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIA 187 (327)
Q Consensus 113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~~ 187 (327)
..++.+| |.|++|. .+|+++.. ......+ ++.+.+. +.......+++|+..+++|+..+.+|...
T Consensus 311 ~~v~~yd---~~~~~W~--~~~~~~~~R~~~~~~~~~~~lyv~GG~---~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-- 380 (534)
T PHA03098 311 NSVVSYD---TKTKSWN--KVPELIYPRKNPGVTVFNNRIYVIGGI---YNSISLNTVESWKPGESKWREEPPLIFPR-- 380 (534)
T ss_pred ccEEEEe---CCCCeee--ECCCCCcccccceEEEECCEEEEEeCC---CCCEecceEEEEcCCCCceeeCCCcCcCC--
Confidence 3688999 9999999 99987643 2222222 5544432 22234567999999999999988777533
Q ss_pred CCCCeeeeCCcEEEEEeecC--CCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcC
Q 038993 188 RDSPGVYASGSLHWIVMAEY--GRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYR 264 (327)
Q Consensus 188 ~~~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~ 264 (327)
.....+.++|.+|.+++... .....+..||+.+++|+.+ ++|... ... ..+..+ |+|++++.......
T Consensus 381 ~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-----~~~---~~~~~~-~~iyv~GG~~~~~~ 451 (534)
T PHA03098 381 YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-----YGG---CAIYHD-GKIYVIGGISYIDN 451 (534)
T ss_pred ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-----cCc---eEEEEC-CEEEEECCccCCCC
Confidence 23345778999999987432 1235689999999999987 444332 112 456677 99999987543211
Q ss_pred C-CeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCCcccCCCcccccccCC---CceEEEEecCCC
Q 038993 265 T-PLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEP---PSLLRGWHPTSF 324 (327)
Q Consensus 265 ~-~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 324 (327)
. ..-.+|+.+-. ..+|++.-.++.+..........+..+.+-..+. ...+..|||++.
T Consensus 452 ~~~~~~v~~yd~~--~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 452 IKVYNIVESYNPV--TNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CcccceEEEecCC--CCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 0 01235665542 4689987544433221111222333333322221 246778888753
No 11
>PHA02713 hypothetical protein; Provisional
Probab=98.49 E-value=5e-06 Score=81.25 Aligned_cols=190 Identities=10% Similarity=0.094 Sum_probs=115.3
Q ss_pred EEEEEcCCccccceeeccccCCCCCCC---ceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCceecC
Q 038993 114 TLAIWTHLRESTAFYRRQRLPWIPKRL---VAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIAR 188 (327)
Q Consensus 114 ~~~V~N~~~P~T~~~~~~~LP~~~~~~---~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~~~ 188 (327)
.+..+| |.+++|. .+++++... ....++ ++.+.+.. ........++.|+..++.|..++.+|....
T Consensus 273 ~v~~yd---~~~~~W~--~l~~mp~~r~~~~~a~l~~~IYviGG~~--~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~-- 343 (557)
T PHA02713 273 CILVYN---INTMEYS--VISTIPNHIINYASAIVDNEIIIAGGYN--FNNPSLNKVYKINIENKIHVELPPMIKNRC-- 343 (557)
T ss_pred CEEEEe---CCCCeEE--ECCCCCccccceEEEEECCEEEEEcCCC--CCCCccceEEEEECCCCeEeeCCCCcchhh--
Confidence 467789 9999999 998877541 111122 44443321 112235679999999999999987775332
Q ss_pred CCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcC--
Q 038993 189 DSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYR-- 264 (327)
Q Consensus 189 ~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~-- 264 (327)
....+.++|.+|.+++... .....+-.||+.+++|+.+ ++|... ... ..++++ |+|++++.......
T Consensus 344 ~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r-----~~~---~~~~~~-g~IYviGG~~~~~~~~ 414 (557)
T PHA02713 344 RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL-----SSY---GMCVLD-QYIYIIGGRTEHIDYT 414 (557)
T ss_pred ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc-----ccc---cEEEEC-CEEEEEeCCCcccccc
Confidence 2346788999999998643 2234689999999999987 555433 122 556788 99999987543100
Q ss_pred --------------CCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCCcccCCCcccccccCC--C--ceEEEEecCC
Q 038993 265 --------------TPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEP--P--SLLRGWHPTS 323 (327)
Q Consensus 265 --------------~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~ 323 (327)
...-.+...+- ..+.|+.+..+.............+.+..+-..++ + ..+..|||++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 415 SVHHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cccccccccccccccccceEEEECC--CCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 00112222221 13679987766555443333344444433322211 1 2356799987
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.49 E-value=6.3e-06 Score=80.47 Aligned_cols=168 Identities=15% Similarity=0.146 Sum_probs=116.7
Q ss_pred EEEeccCCcEEeeecC----CCCEEEEEcCCccccceeeccccCCCCCCCceEEEE-------EEEEEEEeCCCCCC-Cc
Q 038993 95 EVVGCCNGLLCIATNR----LPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFMG-------LVRIARRSGDACFG-GA 162 (327)
Q Consensus 95 ~~~~sc~GLlcl~~~~----~~~~~~V~N~~~P~T~~~~~~~LP~~~~~~~~~gfg-------vv~v~~~~~~~~~~-~~ 162 (327)
.-+++++|.|-..... .-..+-.++ |.|.+|. ..+++... ..|+| ++.+.+. ++.. ..
T Consensus 374 ~~v~~l~g~iYavGG~dg~~~l~svE~YD---p~~~~W~--~va~m~~~--r~~~gv~~~~g~iYi~GG~---~~~~~~l 443 (571)
T KOG4441|consen 374 FGVAVLDGKLYAVGGFDGEKSLNSVECYD---PVTNKWT--PVAPMLTR--RSGHGVAVLGGKLYIIGGG---DGSSNCL 443 (571)
T ss_pred ceeEEECCEEEEEeccccccccccEEEec---CCCCccc--ccCCCCcc--eeeeEEEEECCEEEEEcCc---CCCcccc
Confidence 3567777877544321 233577889 9999999 88877654 24444 4444332 2223 66
Q ss_pred cEEEEEEcCCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeeec-CCCCCCcCCccee
Q 038993 163 AEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKELP-LPPPVLLETGCRV 240 (327)
Q Consensus 163 ~~~~Vys~~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~ 240 (327)
..++.|+..+++|+.++.++..... ...+.+||.+|.+++.+. .....+-+||+++.+|+.+. ++... ...
T Consensus 444 ~sve~YDP~t~~W~~~~~M~~~R~~--~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r-----s~~ 516 (571)
T KOG4441|consen 444 NSVECYDPETNTWTLIAPMNTRRSG--FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR-----SAV 516 (571)
T ss_pred ceEEEEcCCCCceeecCCccccccc--ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc-----ccc
Confidence 8999999999999999888765432 236788999999998764 23456899999999999993 33222 122
Q ss_pred eccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEE
Q 038993 241 RANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFS 287 (327)
Q Consensus 241 ~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~ 287 (327)
.++..+ |+|+++...++......++.| +.. .+.|+....
T Consensus 517 ---g~~~~~-~~ly~vGG~~~~~~l~~ve~y---dp~-~d~W~~~~~ 555 (571)
T KOG4441|consen 517 ---GVVVLG-GKLYAVGGFDGNNNLNTVECY---DPE-TDTWTEVTE 555 (571)
T ss_pred ---cEEEEC-CEEEEEecccCccccceeEEc---CCC-CCceeeCCC
Confidence 667888 999999998775555566666 322 468998766
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=98.48 E-value=7.2e-06 Score=78.81 Aligned_cols=177 Identities=8% Similarity=-0.022 Sum_probs=109.3
Q ss_pred CEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCceec
Q 038993 113 QTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIA 187 (327)
Q Consensus 113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~~ 187 (327)
..+..+| |.+++|. .+|+++.. ......+ ++.+.+. .....++.|+..+++|..++.+|....
T Consensus 287 ~~v~~Yd---p~~~~W~--~~~~m~~~r~~~~~v~~~~~iYviGG~------~~~~sve~ydp~~n~W~~~~~l~~~r~- 354 (480)
T PHA02790 287 NNAIAVN---YISNNWI--PIPPMNSPRLYASGVPANNKLYVVGGL------PNPTSVERWFHGDAAWVNMPSLLKPRC- 354 (480)
T ss_pred CeEEEEE---CCCCEEE--ECCCCCchhhcceEEEECCEEEEECCc------CCCCceEEEECCCCeEEECCCCCCCCc-
Confidence 4567789 9999999 99987654 1222222 5555432 123568999999999999988775332
Q ss_pred CCCCeeeeCCcEEEEEeecCCCccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCe
Q 038993 188 RDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPL 267 (327)
Q Consensus 188 ~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~ 267 (327)
....+.++|.+|.+++... ....+..||+++++|+.++.++... ... ..++++ |+|++++. .
T Consensus 355 -~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~~r----~~~---~~~~~~-~~IYv~GG--------~ 416 (480)
T PHA02790 355 -NPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYYPH----YKS---CALVFG-RRLFLVGR--------N 416 (480)
T ss_pred -ccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCCcc----ccc---eEEEEC-CEEEEECC--------c
Confidence 3346788999999987643 2245788999999999884332221 122 556788 99999873 2
Q ss_pred EEEEEEeeCCCCCCeEEEEEEcCCCCCCCCcccCCCcccccccCC---CceEEEEecCC
Q 038993 268 SHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEP---PSLLRGWHPTS 323 (327)
Q Consensus 268 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 323 (327)
.+++ +.. .+.|+..-.+..+..........+.+..+--.+. -..+-.|||++
T Consensus 417 ~e~y---dp~-~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 417 AEFY---CES-SNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred eEEe---cCC-CCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence 2222 222 4689987655443322222233333322222211 24577888875
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=98.45 E-value=9.7e-06 Score=77.92 Aligned_cols=137 Identities=12% Similarity=0.057 Sum_probs=92.8
Q ss_pred EeccCCcEEeeec-CCCCEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEc
Q 038993 97 VGCCNGLLCIATN-RLPQTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSL 170 (327)
Q Consensus 97 ~~sc~GLlcl~~~-~~~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~ 170 (327)
.++.+|-|.+... .....+-.++ |.+.+|. .+|+++.. .....++ ++.+.+.. .....+++|+.
T Consensus 314 ~v~~~~~iYviGG~~~~~sve~yd---p~~n~W~--~~~~l~~~r~~~~~~~~~g~IYviGG~~-----~~~~~ve~ydp 383 (480)
T PHA02790 314 GVPANNKLYVVGGLPNPTSVERWF---HGDAAWV--NMPSLLKPRCNPAVASINNVIYVIGGHS-----ETDTTTEYLLP 383 (480)
T ss_pred EEEECCEEEEECCcCCCCceEEEE---CCCCeEE--ECCCCCCCCcccEEEEECCEEEEecCcC-----CCCccEEEEeC
Confidence 4456777644332 1234577889 9999999 99988754 1222232 66554421 12357899999
Q ss_pred CCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecCCCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeC
Q 038993 171 ARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLD 249 (327)
Q Consensus 171 ~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~ 249 (327)
.++.|..++.++.... ....+.++|.+|.++.. .-.||+++++|+.+ ++|... ... .+++++
T Consensus 384 ~~~~W~~~~~m~~~r~--~~~~~~~~~~IYv~GG~-------~e~ydp~~~~W~~~~~m~~~r-----~~~---~~~v~~ 446 (480)
T PHA02790 384 NHDQWQFGPSTYYPHY--KSCALVFGRRLFLVGRN-------AEFYCESSNTWTLIDDPIYPR-----DNP---ELIIVD 446 (480)
T ss_pred CCCEEEeCCCCCCccc--cceEEEECCEEEEECCc-------eEEecCCCCcEeEcCCCCCCc-----ccc---EEEEEC
Confidence 9999999887765432 23467889999998753 56799999999988 344322 223 677888
Q ss_pred CCcEEEEEecCC
Q 038993 250 NGCLCLVSNYGG 261 (327)
Q Consensus 250 ~g~L~~~~~~~~ 261 (327)
|+|++++....
T Consensus 447 -~~IYviGG~~~ 457 (480)
T PHA02790 447 -NKLLLIGGFYR 457 (480)
T ss_pred -CEEEEECCcCC
Confidence 99999998653
No 15
>PHA03098 kelch-like protein; Provisional
Probab=98.28 E-value=5.8e-05 Score=73.66 Aligned_cols=169 Identities=16% Similarity=0.211 Sum_probs=105.6
Q ss_pred EeccCCcEEeeecC----CCCEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEE
Q 038993 97 VGCCNGLLCIATNR----LPQTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKV 167 (327)
Q Consensus 97 ~~sc~GLlcl~~~~----~~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~V 167 (327)
+++.+|-+.+.... ....+.++| |.|++|. .+|+++.. ......+ ++.+.+.. ........+++
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd---~~~~~W~--~~~~lp~~r~~~~~~~~~~~iYv~GG~~--~~~~~~~~v~~ 410 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWK---PGESKWR--EEPPLIFPRYNPCVVNVNNLIYVIGGIS--KNDELLKTVEC 410 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEc---CCCCcee--eCCCcCcCCccceEEEECCEEEEECCcC--CCCcccceEEE
Confidence 34455655433221 234678899 9999999 98877654 1222222 44443321 11223568999
Q ss_pred EEcCCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecCC----CccEEEEEeCCCceeeeec-CCCCCCcCCcceeec
Q 038993 168 YSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYG----RHDFILALDLSDEAYKELP-LPPPVLLETGCRVRA 242 (327)
Q Consensus 168 ys~~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~----~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~ 242 (327)
|+..+++|+.++.+|.... ....+..+|.+|.+++.... ....+..||+++++|+.++ +|... ...
T Consensus 411 yd~~t~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-----~~~-- 481 (534)
T PHA03098 411 FSLNTNKWSKGSPLPISHY--GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-----INA-- 481 (534)
T ss_pred EeCCCCeeeecCCCCcccc--CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-----ccc--
Confidence 9999999999887765432 23467889999999875421 1234899999999999884 33221 122
Q ss_pred cEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEE
Q 038993 243 NYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFS 287 (327)
Q Consensus 243 ~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~ 287 (327)
.++..+ |+|++++...... ..-.|++.+-. ...|.....
T Consensus 482 -~~~~~~-~~iyv~GG~~~~~--~~~~v~~yd~~--~~~W~~~~~ 520 (534)
T PHA03098 482 -SLCIFN-NKIYVVGGDKYEY--YINEIEVYDDK--TNTWTLFCK 520 (534)
T ss_pred -eEEEEC-CEEEEEcCCcCCc--ccceeEEEeCC--CCEEEecCC
Confidence 556677 9999998765421 12356666542 367987754
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.21 E-value=0.00015 Score=66.75 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=97.5
Q ss_pred CEEEEEcCCcc--ccceeeccccCCCCC-C---CceEEEE--EEEEEEEeCCC---CCCCccEEEEEEcCCCceEEcCC-
Q 038993 113 QTLAIWTHLRE--STAFYRRQRLPWIPK-R---LVAFFMG--LVRIARRSGDA---CFGGAAEVKVYSLARNSWKRIQD- 180 (327)
Q Consensus 113 ~~~~V~N~~~P--~T~~~~~~~LP~~~~-~---~~~~gfg--vv~v~~~~~~~---~~~~~~~~~Vys~~~~~Wr~~~~- 180 (327)
..+++.+ + .+++|. .+|+++. . ......+ ++.+....... .......++.|+..+++|+.++.
T Consensus 29 ~~~~~~d---~~~~~~~W~--~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~ 103 (346)
T TIGR03547 29 TSWYKLD---LKKPSKGWQ--KIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR 103 (346)
T ss_pred CeeEEEE---CCCCCCCce--ECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC
Confidence 4566665 5 678899 9988762 2 1122222 55554432110 01124579999999999999863
Q ss_pred CCCceecCCCCee-eeCCcEEEEEeecCC-----------------------------------CccEEEEEeCCCceee
Q 038993 181 IPPCYIARDSPGV-YASGSLHWIVMAEYG-----------------------------------RHDFILALDLSDEAYK 224 (327)
Q Consensus 181 ~p~~~~~~~~~~v-~~~G~lywl~~~~~~-----------------------------------~~~~il~fD~~~e~~~ 224 (327)
+|... .....+ .++|.+|.++..... ....+..||+.+.+|+
T Consensus 104 ~p~~~--~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~ 181 (346)
T TIGR03547 104 SPVGL--LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWR 181 (346)
T ss_pred CCCcc--cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCcee
Confidence 22211 111123 579999999765310 0146899999999999
Q ss_pred ee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEEcCC
Q 038993 225 EL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEE 291 (327)
Q Consensus 225 ~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 291 (327)
.+ ++|.... ... .++.++ |+|+++...... .....++|..+-..+...|++...++.+
T Consensus 182 ~~~~~p~~~r----~~~---~~~~~~-~~iyv~GG~~~~-~~~~~~~~~y~~~~~~~~W~~~~~m~~~ 240 (346)
T TIGR03547 182 NLGENPFLGT----AGS---AIVHKG-NKLLLINGEIKP-GLRTAEVKQYLFTGGKLEWNKLPPLPPP 240 (346)
T ss_pred ECccCCCCcC----CCc---eEEEEC-CEEEEEeeeeCC-CccchheEEEEecCCCceeeecCCCCCC
Confidence 98 4553221 122 566778 999999876432 1224566765521224589987766543
No 17
>PLN02153 epithiospecifier protein
Probab=98.21 E-value=0.00018 Score=66.13 Aligned_cols=163 Identities=11% Similarity=0.066 Sum_probs=96.8
Q ss_pred CEEEEEcCCccccceeeccccCCC-----C-CC--CceEEEE--EEEEEEEeCCC---CCCCccEEEEEEcCCCceEEcC
Q 038993 113 QTLAIWTHLRESTAFYRRQRLPWI-----P-KR--LVAFFMG--LVRIARRSGDA---CFGGAAEVKVYSLARNSWKRIQ 179 (327)
Q Consensus 113 ~~~~V~N~~~P~T~~~~~~~LP~~-----~-~~--~~~~gfg--vv~v~~~~~~~---~~~~~~~~~Vys~~~~~Wr~~~ 179 (327)
..+.++| |.|.+|. .++++ + .+ .....++ ++.+....... .......+++|+..+++|+.++
T Consensus 101 ~~v~~yd---~~t~~W~--~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 101 SDFYSYD---TVKNEWT--FLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP 175 (341)
T ss_pred CcEEEEE---CCCCEEE--EeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC
Confidence 4688999 9999999 88764 2 11 1111221 44333221100 0112357899999999999987
Q ss_pred CCCCceec-CCCCeeeeCCcEEEEEeecC---------CCccEEEEEeCCCceeeeec----CCCCCCcCCcceeeccEE
Q 038993 180 DIPPCYIA-RDSPGVYASGSLHWIVMAEY---------GRHDFILALDLSDEAYKELP----LPPPVLLETGCRVRANYF 245 (327)
Q Consensus 180 ~~p~~~~~-~~~~~v~~~G~lywl~~~~~---------~~~~~il~fD~~~e~~~~i~----lP~~~~~~~~~~~~~~~l 245 (327)
.+...... .....+.++|.+|.+..... .....+.+||+++.+|+.+. +|... ... ..
T Consensus 176 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r-----~~~---~~ 247 (341)
T PLN02153 176 DPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR-----SVF---AH 247 (341)
T ss_pred CCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc-----cee---ee
Confidence 54321111 12235678999999865321 01246899999999999884 24322 122 45
Q ss_pred EEeCCCcEEEEEecCCC-------cCCCeEEEEEEeeCCCCCCeEEEEEEcCC
Q 038993 246 GVLDNGCLCLVSNYGGG-------YRTPLSHVWVMTEYGVKDSWTKLFSILEE 291 (327)
Q Consensus 246 ~~~~~g~L~~~~~~~~~-------~~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 291 (327)
+.++ ++|+++...... .....-++|+++-. ..+|+++......
T Consensus 248 ~~~~-~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~~~~~~~ 297 (341)
T PLN02153 248 AVVG-KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKLGECGEP 297 (341)
T ss_pred EEEC-CEEEEECcccCCccccccccccccccEEEEEcC--ccEEEeccCCCCC
Confidence 6777 999999885311 01112279999863 4689987654433
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.10 E-value=0.0003 Score=65.57 Aligned_cols=177 Identities=15% Similarity=0.086 Sum_probs=103.1
Q ss_pred eccCCcEEeeecCCCCEEEEEcCCccc--cceeeccccCCCCC--C--CceEEEE--EEEEEEEeCCCC---CCCccEEE
Q 038993 98 GCCNGLLCIATNRLPQTLAIWTHLRES--TAFYRRQRLPWIPK--R--LVAFFMG--LVRIARRSGDAC---FGGAAEVK 166 (327)
Q Consensus 98 ~sc~GLlcl~~~~~~~~~~V~N~~~P~--T~~~~~~~LP~~~~--~--~~~~gfg--vv~v~~~~~~~~---~~~~~~~~ 166 (327)
+..++-|.+........+++.+ +- +++|. .+|+.+. + ......+ ++.+........ ......++
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d---~~~~~~~W~--~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~ 109 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLD---LNAPSKGWT--KIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVY 109 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEE---CCCCCCCeE--ECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEE
Confidence 4455555443322334567776 54 57899 8887653 2 1112222 444433211000 11246799
Q ss_pred EEEcCCCceEEcCCC-CCceecCCCCeee-eCCcEEEEEeecCC-----------------------------------C
Q 038993 167 VYSLARNSWKRIQDI-PPCYIARDSPGVY-ASGSLHWIVMAEYG-----------------------------------R 209 (327)
Q Consensus 167 Vys~~~~~Wr~~~~~-p~~~~~~~~~~v~-~~G~lywl~~~~~~-----------------------------------~ 209 (327)
+|+..+++|+.+... |... .....+. .+|.+|.++..... .
T Consensus 110 ~YD~~~n~W~~~~~~~p~~~--~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (376)
T PRK14131 110 KYDPKTNSWQKLDTRSPVGL--AGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFF 187 (376)
T ss_pred EEeCCCCEEEeCCCCCCCcc--cceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCc
Confidence 999999999998742 2221 1122344 79999999875310 1
Q ss_pred ccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEE
Q 038993 210 HDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSI 288 (327)
Q Consensus 210 ~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i 288 (327)
...+..||+.+.+|+.+ ++|.... ... .++..+ ++|+++...... +....++|..+-...+.+|+++..+
T Consensus 188 ~~~v~~YD~~t~~W~~~~~~p~~~~----~~~---a~v~~~-~~iYv~GG~~~~-~~~~~~~~~~~~~~~~~~W~~~~~~ 258 (376)
T PRK14131 188 NKEVLSYDPSTNQWKNAGESPFLGT----AGS---AVVIKG-NKLWLINGEIKP-GLRTDAVKQGKFTGNNLKWQKLPDL 258 (376)
T ss_pred CceEEEEECCCCeeeECCcCCCCCC----Ccc---eEEEEC-CEEEEEeeeECC-CcCChhheEEEecCCCcceeecCCC
Confidence 24699999999999988 4553221 122 556677 999999875322 1235677776532234689988766
Q ss_pred cC
Q 038993 289 LE 290 (327)
Q Consensus 289 ~~ 290 (327)
+.
T Consensus 259 p~ 260 (376)
T PRK14131 259 PP 260 (376)
T ss_pred CC
Confidence 54
No 19
>PLN02193 nitrile-specifier protein
Probab=98.05 E-value=0.00066 Score=65.18 Aligned_cols=158 Identities=12% Similarity=0.142 Sum_probs=97.8
Q ss_pred CEEEEEcCCccccceeeccccCCCC---C-C---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCC
Q 038993 113 QTLAIWTHLRESTAFYRRQRLPWIP---K-R---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPP 183 (327)
Q Consensus 113 ~~~~V~N~~~P~T~~~~~~~LP~~~---~-~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~ 183 (327)
..+.++| |.+.+|. .+|+.. . . ......+ ++.+.. .+.......+++|++.++.|+.+..++.
T Consensus 193 ~~v~~yD---~~~~~W~--~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG---~~~~~~~ndv~~yD~~t~~W~~l~~~~~ 264 (470)
T PLN02193 193 KHLYVFD---LETRTWS--ISPATGDVPHLSCLGVRMVSIGSTLYVFGG---RDASRQYNGFYSFDTTTNEWKLLTPVEE 264 (470)
T ss_pred CcEEEEE---CCCCEEE--eCCCCCCCCCCcccceEEEEECCEEEEECC---CCCCCCCccEEEEECCCCEEEEcCcCCC
Confidence 3588999 9999999 876532 1 1 1111222 333322 1222345679999999999999875521
Q ss_pred ceec-CCCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCC
Q 038993 184 CYIA-RDSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGG 261 (327)
Q Consensus 184 ~~~~-~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~ 261 (327)
.+.. .....+..++.+|.+..... .....+.+||+.+.+|+.++.|.... ...... .+++++ |+++++.....
T Consensus 265 ~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~-~~R~~~---~~~~~~-gkiyviGG~~g 339 (470)
T PLN02193 265 GPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSF-SIRGGA---GLEVVQ-GKVWVVYGFNG 339 (470)
T ss_pred CCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCC-CCCCCc---EEEEEC-CcEEEEECCCC
Confidence 1111 12235668999999987543 22346889999999999886543221 111122 566777 99999887543
Q ss_pred CcCCCeEEEEEEeeCCCCCCeEEEEEE
Q 038993 262 GYRTPLSHVWVMTEYGVKDSWTKLFSI 288 (327)
Q Consensus 262 ~~~~~~l~iW~l~~~~~~~~W~~~~~i 288 (327)
. ..-++|+++-. ..+|++...+
T Consensus 340 ~---~~~dv~~yD~~--t~~W~~~~~~ 361 (470)
T PLN02193 340 C---EVDDVHYYDPV--QDKWTQVETF 361 (470)
T ss_pred C---ccCceEEEECC--CCEEEEeccC
Confidence 2 24567887752 3679987654
No 20
>PLN02153 epithiospecifier protein
Probab=98.01 E-value=0.00084 Score=61.64 Aligned_cols=159 Identities=16% Similarity=0.209 Sum_probs=94.1
Q ss_pred CEEEEEcCCccccceeeccccCCCCC--CCceEEE-----E--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCC--
Q 038993 113 QTLAIWTHLRESTAFYRRQRLPWIPK--RLVAFFM-----G--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDI-- 181 (327)
Q Consensus 113 ~~~~V~N~~~P~T~~~~~~~LP~~~~--~~~~~gf-----g--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~-- 181 (327)
..++++| |.+.+|. .+|+... .....++ + ++.+.. .+.......+++|+..++.|+.++.+
T Consensus 50 ~~~~~yd---~~~~~W~--~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG---~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 121 (341)
T PLN02153 50 KDLYVFD---FNTHTWS--IAPANGDVPRISCLGVRMVAVGTKLYIFGG---RDEKREFSDFYSYDTVKNEWTFLTKLDE 121 (341)
T ss_pred CcEEEEE---CCCCEEE--EcCccCCCCCCccCceEEEEECCEEEEECC---CCCCCccCcEEEEECCCCEEEEeccCCC
Confidence 4689999 9999999 8876532 1111122 2 333322 12223345799999999999988755
Q ss_pred ---CCceecCCCCeeeeCCcEEEEEeecCC-------CccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCC
Q 038993 182 ---PPCYIARDSPGVYASGSLHWIVMAEYG-------RHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNG 251 (327)
Q Consensus 182 ---p~~~~~~~~~~v~~~G~lywl~~~~~~-------~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g 251 (327)
|... .....+..+|.+|.++..... ....+.+||+.+.+|+.++.+.... ...... .++.++ |
T Consensus 122 ~~~p~~R--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~-~~r~~~---~~~~~~-~ 194 (341)
T PLN02153 122 EGGPEAR--TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF-EKRGGA---GFAVVQ-G 194 (341)
T ss_pred CCCCCCc--eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC-CCCCcc---eEEEEC-C
Confidence 2211 122357789999999875421 1135889999999999875432110 011122 456778 9
Q ss_pred cEEEEEecCCC------cCCCeEEEEEEeeCCCCCCeEEEEEE
Q 038993 252 CLCLVSNYGGG------YRTPLSHVWVMTEYGVKDSWTKLFSI 288 (327)
Q Consensus 252 ~L~~~~~~~~~------~~~~~l~iW~l~~~~~~~~W~~~~~i 288 (327)
+|+++...... .....-+|++.+-. ..+|+++...
T Consensus 195 ~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~ 235 (341)
T PLN02153 195 KIWVVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVETT 235 (341)
T ss_pred eEEEEeccccccccCCccceecCceEEEEcC--CCcEEecccc
Confidence 99998654210 00111246666532 3679987643
No 21
>PLN02193 nitrile-specifier protein
Probab=98.00 E-value=0.0011 Score=63.78 Aligned_cols=158 Identities=7% Similarity=0.026 Sum_probs=96.9
Q ss_pred CEEEEEcCCccccceeeccccCCCC----CC--CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCc
Q 038993 113 QTLAIWTHLRESTAFYRRQRLPWIP----KR--LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPC 184 (327)
Q Consensus 113 ~~~~V~N~~~P~T~~~~~~~LP~~~----~~--~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~ 184 (327)
..++++| |.|.+|. .+++.. ++ ......+ ++.+... ........+++|+..+++|..+......
T Consensus 244 ndv~~yD---~~t~~W~--~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~---~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 315 (470)
T PLN02193 244 NGFYSFD---TTTNEWK--LLTPVEEGPTPRSFHSMAADEENVYVFGGV---SATARLKTLDSYNIVDKKWFHCSTPGDS 315 (470)
T ss_pred ccEEEEE---CCCCEEE--EcCcCCCCCCCccceEEEEECCEEEEECCC---CCCCCcceEEEEECCCCEEEeCCCCCCC
Confidence 5688999 9999999 887652 22 1111222 3333221 2223456789999999999988642111
Q ss_pred eec-CCCCeeeeCCcEEEEEeecCCCccEEEEEeCCCceeeeecC----CCCCCcCCcceeeccEEEEeCCCcEEEEEec
Q 038993 185 YIA-RDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPL----PPPVLLETGCRVRANYFGVLDNGCLCLVSNY 259 (327)
Q Consensus 185 ~~~-~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~l----P~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~ 259 (327)
... .....+.++|.+|.+..........+..||+.+++|+.++. |... ... ..+.++ ++|+++...
T Consensus 316 ~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R-----~~~---~~~~~~-~~iyv~GG~ 386 (470)
T PLN02193 316 FSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSER-----SVF---ASAAVG-KHIVIFGGE 386 (470)
T ss_pred CCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCc-----cee---EEEEEC-CEEEEECCc
Confidence 111 12235678999999876432223569999999999998842 2221 122 456677 999999886
Q ss_pred CCCc-----CC--CeEEEEEEeeCCCCCCeEEEEEEc
Q 038993 260 GGGY-----RT--PLSHVWVMTEYGVKDSWTKLFSIL 289 (327)
Q Consensus 260 ~~~~-----~~--~~l~iW~l~~~~~~~~W~~~~~i~ 289 (327)
.... .. ..-++|+++-. ..+|+++..+.
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~--t~~W~~~~~~~ 421 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTE--TLQWERLDKFG 421 (470)
T ss_pred cCCccccccCccceeccEEEEEcC--cCEEEEcccCC
Confidence 4210 01 11268999863 46899876554
No 22
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.98 E-value=0.00059 Score=62.17 Aligned_cols=136 Identities=10% Similarity=-0.005 Sum_probs=82.7
Q ss_pred CEEEEEcCCcccccee----eccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCC
Q 038993 113 QTLAIWTHLRESTAFY----RRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPP 183 (327)
Q Consensus 113 ~~~~V~N~~~P~T~~~----~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~ 183 (327)
..+..+| +.+++| . .+|+++.. .....++ ++.+... ........+++|+..++.|..++.+|.
T Consensus 88 ~~v~~~d---~~~~~w~~~~~--~~~~lp~~~~~~~~~~~~~~iYv~GG~---~~~~~~~~v~~yd~~~~~W~~~~~~p~ 159 (323)
T TIGR03548 88 SSVYRIT---LDESKEELICE--TIGNLPFTFENGSACYKDGTLYVGGGN---RNGKPSNKSYLFNLETQEWFELPDFPG 159 (323)
T ss_pred eeEEEEE---EcCCceeeeee--EcCCCCcCccCceEEEECCEEEEEeCc---CCCccCceEEEEcCCCCCeeECCCCCC
Confidence 4678889 989887 6 67776544 2222222 5554432 112335689999999999999987664
Q ss_pred ceecCCCCeeeeCCcEEEEEeecCCCccEEEEEeCCCceeeeecC-CCCCCcCCcceeeccEEEEeCCCcEEEEEecC
Q 038993 184 CYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPL-PPPVLLETGCRVRANYFGVLDNGCLCLVSNYG 260 (327)
Q Consensus 184 ~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~l-P~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~ 260 (327)
... .....+.++|.+|.++.........+.+||+++++|+.+.. +... ..........++..+ ++|+++....
T Consensus 160 ~~r-~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~--~p~~~~~~~~~~~~~-~~iyv~GG~~ 233 (323)
T TIGR03548 160 EPR-VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDS--EPISLLGAASIKINE-SLLLCIGGFN 233 (323)
T ss_pred CCC-CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCC--CceeccceeEEEECC-CEEEEECCcC
Confidence 221 12234678999999987643222346899999999998842 2110 010000001344445 8999988754
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.94 E-value=0.00099 Score=60.68 Aligned_cols=152 Identities=14% Similarity=0.131 Sum_probs=93.0
Q ss_pred EEEEE-cCCccccc-eeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCce----EEcCCCC
Q 038993 114 TLAIW-THLRESTA-FYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSW----KRIQDIP 182 (327)
Q Consensus 114 ~~~V~-N~~~P~T~-~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~W----r~~~~~p 182 (327)
.+++. + |..+ +|. .+++++.. ......+ ++.+... +.......++.|+..++.| +.++.+|
T Consensus 40 ~v~~~~~---~~~~~~W~--~~~~lp~~r~~~~~~~~~~~lyviGG~---~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp 111 (323)
T TIGR03548 40 GIYIAKD---ENSNLKWV--KDGQLPYEAAYGASVSVENGIYYIGGS---NSSERFSSVYRITLDESKEELICETIGNLP 111 (323)
T ss_pred eeEEEec---CCCceeEE--EcccCCccccceEEEEECCEEEEEcCC---CCCCCceeEEEEEEcCCceeeeeeEcCCCC
Confidence 34544 5 5433 688 77766543 1122222 4444332 2223456889999999888 5666666
Q ss_pred CceecCCCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeeec-CCCCCCcCCcceeeccEEEEeCCCcEEEEEecC
Q 038993 183 PCYIARDSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKELP-LPPPVLLETGCRVRANYFGVLDNGCLCLVSNYG 260 (327)
Q Consensus 183 ~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~ 260 (327)
.... ....+.++|.+|.++.... .....+.+||+.+++|+.++ +|...+ ... ..+..+ |+|+++....
T Consensus 112 ~~~~--~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r----~~~---~~~~~~-~~iYv~GG~~ 181 (323)
T TIGR03548 112 FTFE--NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR----VQP---VCVKLQ-NELYVFGGGS 181 (323)
T ss_pred cCcc--CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC----Ccc---eEEEEC-CEEEEEcCCC
Confidence 4332 3346788999999987532 22356899999999999884 664321 122 456778 9999998765
Q ss_pred CCcCCCeEEEEEEeeCCCCCCeEEEEEE
Q 038993 261 GGYRTPLSHVWVMTEYGVKDSWTKLFSI 288 (327)
Q Consensus 261 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i 288 (327)
.. ...++|+.+-. ..+|++...+
T Consensus 182 ~~---~~~~~~~yd~~--~~~W~~~~~~ 204 (323)
T TIGR03548 182 NI---AYTDGYKYSPK--KNQWQKVADP 204 (323)
T ss_pred Cc---cccceEEEecC--CCeeEECCCC
Confidence 32 13456666532 3679886544
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.92 E-value=0.0028 Score=59.01 Aligned_cols=148 Identities=15% Similarity=0.142 Sum_probs=89.8
Q ss_pred CEEEEEcCCccccceeeccccCCCCC-C---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCcee
Q 038993 113 QTLAIWTHLRESTAFYRRQRLPWIPK-R---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYI 186 (327)
Q Consensus 113 ~~~~V~N~~~P~T~~~~~~~LP~~~~-~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~ 186 (327)
..+.++| |.|.+|. .+++++. . ......+ ++.+.................|+.+++.|..+..+|....
T Consensus 189 ~~v~~YD---~~t~~W~--~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~ 263 (376)
T PRK14131 189 KEVLSYD---PSTNQWK--NAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPG 263 (376)
T ss_pred ceEEEEE---CCCCeee--ECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCc
Confidence 5689999 9999999 9887664 2 1222222 5555442211111112222334667899999987764321
Q ss_pred c--C----CCCeeeeCCcEEEEEeecCCC------------------ccEEEEEeCCCceeeee-cCCCCCCcCCcceee
Q 038993 187 A--R----DSPGVYASGSLHWIVMAEYGR------------------HDFILALDLSDEAYKEL-PLPPPVLLETGCRVR 241 (327)
Q Consensus 187 ~--~----~~~~v~~~G~lywl~~~~~~~------------------~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~ 241 (327)
. . ....+.++|.+|.++...... ...+-.||+++.+|+.+ ++|... ...
T Consensus 264 ~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r-----~~~- 337 (376)
T PRK14131 264 GSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL-----AYG- 337 (376)
T ss_pred CCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc-----cce-
Confidence 1 1 111467899999998753200 01355799999999877 556533 122
Q ss_pred ccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEee
Q 038993 242 ANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTE 275 (327)
Q Consensus 242 ~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~ 275 (327)
..+.++ |+|+++...... +...-+|+.++-
T Consensus 338 --~av~~~-~~iyv~GG~~~~-~~~~~~v~~~~~ 367 (376)
T PRK14131 338 --VSVSWN-NGVLLIGGETAG-GKAVSDVTLLSW 367 (376)
T ss_pred --EEEEeC-CEEEEEcCCCCC-CcEeeeEEEEEE
Confidence 456778 999999986432 233567777775
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.68 E-value=0.0026 Score=58.53 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=83.9
Q ss_pred CEEEEEcCCccccceeeccccCCCCC-C---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEc--CCCceEEcCCCCCc
Q 038993 113 QTLAIWTHLRESTAFYRRQRLPWIPK-R---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSL--ARNSWKRIQDIPPC 184 (327)
Q Consensus 113 ~~~~V~N~~~P~T~~~~~~~LP~~~~-~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~--~~~~Wr~~~~~p~~ 184 (327)
..+.++| |.|.+|. .+++++. . .....++ ++.+..... . ......+++|+. +++.|..+..+|..
T Consensus 168 ~~v~~YD---p~t~~W~--~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~-~-~~~~~~~~~y~~~~~~~~W~~~~~m~~~ 240 (346)
T TIGR03547 168 KNVLSYD---PSTNQWR--NLGENPFLGTAGSAIVHKGNKLLLINGEIK-P-GLRTAEVKQYLFTGGKLEWNKLPPLPPP 240 (346)
T ss_pred ceEEEEE---CCCCcee--ECccCCCCcCCCceEEEECCEEEEEeeeeC-C-CccchheEEEEecCCCceeeecCCCCCC
Confidence 5688999 9999999 9987763 2 1222333 555443211 1 122344556655 66799999877643
Q ss_pred eec--C---CCCeeeeCCcEEEEEeecCC------------------CccEEEEEeCCCceeeee-cCCCCCCcCCccee
Q 038993 185 YIA--R---DSPGVYASGSLHWIVMAEYG------------------RHDFILALDLSDEAYKEL-PLPPPVLLETGCRV 240 (327)
Q Consensus 185 ~~~--~---~~~~v~~~G~lywl~~~~~~------------------~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~ 240 (327)
... . ....+.++|.+|.++..... ....+-.||+++++|+.+ ++|... ...
T Consensus 241 r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~-----~~~ 315 (346)
T TIGR03547 241 KSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL-----AYG 315 (346)
T ss_pred CCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc-----eee
Confidence 211 0 11246789999999875310 013578999999999887 666533 122
Q ss_pred eccEEEEeCCCcEEEEEecCC
Q 038993 241 RANYFGVLDNGCLCLVSNYGG 261 (327)
Q Consensus 241 ~~~~l~~~~~g~L~~~~~~~~ 261 (327)
..+.++ |+|+++.....
T Consensus 316 ---~~~~~~-~~iyv~GG~~~ 332 (346)
T TIGR03547 316 ---VSVSWN-NGVLLIGGENS 332 (346)
T ss_pred ---EEEEcC-CEEEEEeccCC
Confidence 456677 99999998654
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.64 E-value=0.00059 Score=58.60 Aligned_cols=159 Identities=16% Similarity=0.241 Sum_probs=95.7
Q ss_pred CEEEEEcCCccccceeeccc----cCCCCCCCceEEEE-EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcC--CCCCce
Q 038993 113 QTLAIWTHLRESTAFYRRQR----LPWIPKRLVAFFMG-LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQ--DIPPCY 185 (327)
Q Consensus 113 ~~~~V~N~~~P~T~~~~~~~----LP~~~~~~~~~gfg-vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~--~~p~~~ 185 (327)
..++-++ |-|.+|+.+. +|+.....+++..| ..-|+.-..++-......+++++..|-.||.+. +.|+.+
T Consensus 105 N~Ly~fD---p~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw 181 (392)
T KOG4693|consen 105 NLLYEFD---PETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRW 181 (392)
T ss_pred ceeeeec---cccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchh
Confidence 3566778 9999998432 33333223333333 222222111223445678889999999999986 345443
Q ss_pred ecCCCCeeeeCCcEEEEEeecC----------CCccEEEEEeCCCceeeeec----CCCCCCcCCcceeeccEEEEeCCC
Q 038993 186 IARDSPGVYASGSLHWIVMAEY----------GRHDFILALDLSDEAYKELP----LPPPVLLETGCRVRANYFGVLDNG 251 (327)
Q Consensus 186 ~~~~~~~v~~~G~lywl~~~~~----------~~~~~il~fD~~~e~~~~i~----lP~~~~~~~~~~~~~~~l~~~~~g 251 (327)
.-+ ..++.++|.+|-++.+.+ .....|++||+.++.|...+ +|...+ .. ...+++ |
T Consensus 182 RDF-H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR-----SH---S~fvYn-g 251 (392)
T KOG4693|consen 182 RDF-HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR-----SH---STFVYN-G 251 (392)
T ss_pred hhh-hhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc-----cc---ceEEEc-c
Confidence 222 336778899999987654 12357999999999997652 222221 11 556788 9
Q ss_pred cEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEE
Q 038993 252 CLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLF 286 (327)
Q Consensus 252 ~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~ 286 (327)
+++++..+.+.-....-++|..+-. ..-|.++.
T Consensus 252 ~~Y~FGGYng~ln~HfndLy~FdP~--t~~W~~I~ 284 (392)
T KOG4693|consen 252 KMYMFGGYNGTLNVHFNDLYCFDPK--TSMWSVIS 284 (392)
T ss_pred eEEEecccchhhhhhhcceeecccc--cchheeee
Confidence 9999998765322224456666542 23466543
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=4.7e-05 Score=66.56 Aligned_cols=42 Identities=31% Similarity=0.399 Sum_probs=38.2
Q ss_pred CCCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChhhHH
Q 038993 4 RDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIK 45 (327)
Q Consensus 4 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~ 45 (327)
+..|||||+..||+.||.|+|++...|||+|+++.++.....
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~ 139 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ 139 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccccee
Confidence 468999999999999999999999999999999998866544
No 28
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.62 E-value=0.00079 Score=59.22 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=41.0
Q ss_pred CCCCcHHHHHHHHhcCC-----cchhhhheeccccchhhcCChhhHHHHhh
Q 038993 4 RDPLPLHIIDDILSRLH-----VKQLLRLRCVSKTWRDLIDGPDFIKLQLS 49 (327)
Q Consensus 4 ~~~LP~Dll~eIL~rLP-----~ksl~r~r~VcK~W~~li~~~~F~~~~~~ 49 (327)
+..||||++.+||.++= ..+|.++.+|||.|+-...+|+|.+....
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 56899999999998765 59999999999999999999999887654
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.58 E-value=0.00085 Score=59.54 Aligned_cols=46 Identities=28% Similarity=0.410 Sum_probs=40.9
Q ss_pred CCCCc----HHHHHHHHhcCCcchhhhheeccccchhhcCChhhHHHHhh
Q 038993 4 RDPLP----LHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLS 49 (327)
Q Consensus 4 ~~~LP----~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~~~ 49 (327)
+..|| +++.+.||+.|...+|..|..|||+|+++++++...+....
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie 124 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIE 124 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 35689 99999999999999999999999999999999887765543
No 30
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=96.07 E-value=0.062 Score=41.96 Aligned_cols=86 Identities=21% Similarity=0.253 Sum_probs=60.3
Q ss_pred EEEEEeCCCc--eeeeecCCCCCCcCCc------ceeeccEEEEeCCCcEEEEEecCCC-----cCCCeEEEEEEeeC-C
Q 038993 212 FILALDLSDE--AYKELPLPPPVLLETG------CRVRANYFGVLDNGCLCLVSNYGGG-----YRTPLSHVWVMTEY-G 277 (327)
Q Consensus 212 ~il~fD~~~e--~~~~i~lP~~~~~~~~------~~~~~~~l~~~~~g~L~~~~~~~~~-----~~~~~l~iW~l~~~-~ 277 (327)
.|+..|+-++ .++.|+||........ .-.....+++.+ |+|-++...... .....+.+|.|... +
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~-G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSG-GKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecC-CCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 5889998765 7788899976532111 001123777877 999999886542 24568999999985 2
Q ss_pred CCCCeEEEEEEcCCCCCCCCc
Q 038993 278 VKDSWTKLFSILEEQVISPSP 298 (327)
Q Consensus 278 ~~~~W~~~~~i~~~~~~~~~~ 298 (327)
...+|.+.+++++..++....
T Consensus 86 ~~~~W~~d~~v~~~diw~~~~ 106 (131)
T PF07762_consen 86 SSWEWKKDCEVDLSDIWADES 106 (131)
T ss_pred CCCCEEEeEEEEhhhccCCcC
Confidence 357899999999998877644
No 31
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=95.39 E-value=0.19 Score=43.65 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=81.3
Q ss_pred CCEEEEEcCCccccceeeccccCC--CCCC----CceEEEE--EEEEEEEeCC------CCCCCccEEEEEEcCCCceEE
Q 038993 112 PQTLAIWTHLRESTAFYRRQRLPW--IPKR----LVAFFMG--LVRIARRSGD------ACFGGAAEVKVYSLARNSWKR 177 (327)
Q Consensus 112 ~~~~~V~N~~~P~T~~~~~~~LP~--~~~~----~~~~gfg--vv~v~~~~~~------~~~~~~~~~~Vys~~~~~Wr~ 177 (327)
...+.+.| -.|..|+ .+-. .+++ .....++ .+......++ .......++.+++.+|+.|.+
T Consensus 156 S~d~h~ld---~~TmtWr--~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r 230 (392)
T KOG4693|consen 156 SQDTHVLD---FATMTWR--EMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTR 230 (392)
T ss_pred hccceeEe---ccceeee--ehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEecccccccc
Confidence 45678889 9999999 6522 2222 1121222 1211111111 123566788899999999987
Q ss_pred cCCCCCceecCCCCeee-eCCcEEEEEeecC---CCccEEEEEeCCCceeeeecC----CCCCCcCCcceeeccEEEEeC
Q 038993 178 IQDIPPCYIARDSPGVY-ASGSLHWIVMAEY---GRHDFILALDLSDEAYKELPL----PPPVLLETGCRVRANYFGVLD 249 (327)
Q Consensus 178 ~~~~p~~~~~~~~~~v~-~~G~lywl~~~~~---~~~~~il~fD~~~e~~~~i~l----P~~~~~~~~~~~~~~~l~~~~ 249 (327)
....+..+...++.+.+ -||.+|.++.... ..-.-+..||+.+-.|+.|.. |...+ . + .-++.+
T Consensus 231 ~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRR--R--q----C~~v~g 302 (392)
T KOG4693|consen 231 TPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARR--R--Q----CSVVSG 302 (392)
T ss_pred CCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCccc--c--e----eEEEEC
Confidence 75433322223344454 4999999986553 223458999999999999954 32221 1 1 334567
Q ss_pred CCcEEEEEecCC
Q 038993 250 NGCLCLVSNYGG 261 (327)
Q Consensus 250 ~g~L~~~~~~~~ 261 (327)
|+++++.....
T Consensus 303 -~kv~LFGGTsP 313 (392)
T KOG4693|consen 303 -GKVYLFGGTSP 313 (392)
T ss_pred -CEEEEecCCCC
Confidence 99999987543
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.10 E-value=2.8 Score=40.49 Aligned_cols=162 Identities=19% Similarity=0.135 Sum_probs=91.5
Q ss_pred CEEEEEcCCccccceeeccccCCCCC----C--CceEEEE-EEEEEEEeCCCC-CCCccEEEEEEcCCCceEEcCCCCCc
Q 038993 113 QTLAIWTHLRESTAFYRRQRLPWIPK----R--LVAFFMG-LVRIARRSGDAC-FGGAAEVKVYSLARNSWKRIQDIPPC 184 (327)
Q Consensus 113 ~~~~V~N~~~P~T~~~~~~~LP~~~~----~--~~~~gfg-vv~v~~~~~~~~-~~~~~~~~Vys~~~~~Wr~~~~~p~~ 184 (327)
..+...| +.|++|. .+.+... + ++...+| .+.|+. +.+. ......+.||+..+..|..+......
T Consensus 139 ~~l~~~d---~~t~~W~--~l~~~~~~P~~r~~Hs~~~~g~~l~vfG--G~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~ 211 (482)
T KOG0379|consen 139 NELHSLD---LSTRTWS--LLSPTGDPPPPRAGHSATVVGTKLVVFG--GIGGTGDSLNDLHIYDLETSTWSELDTQGEA 211 (482)
T ss_pred hheEecc---CCCCcEE--EecCcCCCCCCcccceEEEECCEEEEEC--CccCcccceeeeeeeccccccceecccCCCC
Confidence 4788999 9999999 7743322 1 3445555 222211 1111 22678999999999999998733222
Q ss_pred eecCCCC-eeeeCCcEEEEEeecC--CCccEEEEEeCCCceeeeecCCCCCCc-CCcceeeccEEEEeCCCcEEEEEecC
Q 038993 185 YIARDSP-GVYASGSLHWIVMAEY--GRHDFILALDLSDEAYKELPLPPPVLL-ETGCRVRANYFGVLDNGCLCLVSNYG 260 (327)
Q Consensus 185 ~~~~~~~-~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i~lP~~~~~-~~~~~~~~~~l~~~~~g~L~~~~~~~ 260 (327)
....... .+.+++.++.+..... ....-+..||+.+.+|..+ |..... ...... .++..+ ..+.+++...
T Consensus 212 P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~--~~~g~~p~~R~~h---~~~~~~-~~~~l~gG~~ 285 (482)
T KOG0379|consen 212 PSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLL--PTGGDLPSPRSGH---SLTVSG-DHLLLFGGGT 285 (482)
T ss_pred CCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeec--cccCCCCCCccee---eeEEEC-CEEEEEcCCc
Confidence 2122222 3444555555443331 2334589999999888843 211110 111222 455555 6677766654
Q ss_pred CCcCCCeEEEEEEeeCCCCCCeEEEEEEc
Q 038993 261 GGYRTPLSHVWVMTEYGVKDSWTKLFSIL 289 (327)
Q Consensus 261 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 289 (327)
.......-++|.|+.. ...|.+.....
T Consensus 286 ~~~~~~l~~~~~l~~~--~~~w~~~~~~~ 312 (482)
T KOG0379|consen 286 DPKQEPLGDLYGLDLE--TLVWSKVESVG 312 (482)
T ss_pred cccccccccccccccc--ccceeeeeccc
Confidence 4201136678888763 46799987776
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=94.77 E-value=1.8 Score=40.13 Aligned_cols=175 Identities=14% Similarity=0.127 Sum_probs=94.3
Q ss_pred CEEEEEcCCccccceeeccccCCCCCC---CceEEE--EEEEEEE--EeCCC--CCCCccEEEEEEcCCCceEEcC--CC
Q 038993 113 QTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFM--GLVRIAR--RSGDA--CFGGAAEVKVYSLARNSWKRIQ--DI 181 (327)
Q Consensus 113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gf--gvv~v~~--~~~~~--~~~~~~~~~Vys~~~~~Wr~~~--~~ 181 (327)
+.+|.+| --+.+|+-+..|..|+. +..... +++.++. |...+ .-.......+|++.+..|..+. +.
T Consensus 98 ndLy~Yn---~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~ 174 (521)
T KOG1230|consen 98 NDLYSYN---TKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG 174 (521)
T ss_pred eeeeEEe---ccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence 3578889 88888982223544433 222111 1333332 11111 1223456789999999999986 33
Q ss_pred CCceecCCCCeeeeCCcEEEEEeecC-----CCccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEE
Q 038993 182 PPCYIARDSPGVYASGSLHWIVMAEY-----GRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLV 256 (327)
Q Consensus 182 p~~~~~~~~~~v~~~G~lywl~~~~~-----~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~ 256 (327)
|...- ..+.|.....|.-++...+ ....-+.+||+++=+|+.+..+.... ...... ++.+.-+|.+.|.
T Consensus 175 PS~RS--GHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~P-tpRSGc---q~~vtpqg~i~vy 248 (521)
T KOG1230|consen 175 PSPRS--GHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGP-TPRSGC---QFSVTPQGGIVVY 248 (521)
T ss_pred CCCCc--cceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCC-CCCCcc---eEEecCCCcEEEE
Confidence 32111 1111222222222222111 12234899999999999996543211 111122 5666623888887
Q ss_pred EecCC-------CcCCCeEEEEEEeeC-C--CCCCeEEEEEEcCCCCCCC
Q 038993 257 SNYGG-------GYRTPLSHVWVMTEY-G--VKDSWTKLFSILEEQVISP 296 (327)
Q Consensus 257 ~~~~~-------~~~~~~l~iW~l~~~-~--~~~~W~~~~~i~~~~~~~~ 296 (327)
+.+.. ..+...-++|+|+-. | ++-.|+++..+.+.+-++.
T Consensus 249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs 298 (521)
T KOG1230|consen 249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS 298 (521)
T ss_pred cchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC
Confidence 76542 125678899999743 2 2346888888877665554
No 34
>PF13964 Kelch_6: Kelch motif
Probab=94.65 E-value=0.062 Score=34.10 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=31.8
Q ss_pred CeeeeCCcEEEEEeecC--CCccEEEEEeCCCceeeee-cCC
Q 038993 191 PGVYASGSLHWIVMAEY--GRHDFILALDLSDEAYKEL-PLP 229 (327)
Q Consensus 191 ~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i-~lP 229 (327)
..|.++|.+|.++.... .....+..||+++.+|+.+ ++|
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 46889999999987764 3456899999999999998 444
No 35
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.49 E-value=3.9 Score=37.60 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=80.6
Q ss_pred CCEEEEEcCCccccceeeccccCCCCCC--C-ceEEEE--EEEEEEEeCCCC--CCCccEEEEEEc----------CCCc
Q 038993 112 PQTLAIWTHLRESTAFYRRQRLPWIPKR--L-VAFFMG--LVRIARRSGDAC--FGGAAEVKVYSL----------ARNS 174 (327)
Q Consensus 112 ~~~~~V~N~~~P~T~~~~~~~LP~~~~~--~-~~~gfg--vv~v~~~~~~~~--~~~~~~~~Vys~----------~~~~ 174 (327)
..+.+|++ +.|+... .+|..... . ..+..| +|.+........ ......+|+++- .+-+
T Consensus 85 ~~~t~vyD---t~t~av~--~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~ 159 (342)
T PF07893_consen 85 SGRTLVYD---TDTRAVA--TGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWS 159 (342)
T ss_pred CCCeEEEE---CCCCeEe--ccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcce
Confidence 56789999 9999999 99987654 1 112222 555543221110 011115566532 2236
Q ss_pred eEEcCCCCCceec------CCCCeeeeCCcEEEEEeecCCCccEEEEEeCCCceeeee---cCCCCCCcC--Ccceeecc
Q 038993 175 WKRIQDIPPCYIA------RDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKEL---PLPPPVLLE--TGCRVRAN 243 (327)
Q Consensus 175 Wr~~~~~p~~~~~------~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i---~lP~~~~~~--~~~~~~~~ 243 (327)
|+.++..|+.... ..+.+|. +|.--|+..... ...-.+||+++.+|+.. .||.....+ ...+.
T Consensus 160 W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~--~~GTysfDt~~~~W~~~GdW~LPF~G~a~y~~el~~--- 233 (342)
T PF07893_consen 160 WRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR--RWGTYSFDTESHEWRKHGDWMLPFHGQAEYVPELDL--- 233 (342)
T ss_pred EEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCC--ceEEEEEEcCCcceeeccceecCcCCccEECCCcCe---
Confidence 8887665533222 2234556 888888865541 12589999999999998 788765321 12233
Q ss_pred EEEEeCCC---cEEEEEecCC
Q 038993 244 YFGVLDNG---CLCLVSNYGG 261 (327)
Q Consensus 244 ~l~~~~~g---~L~~~~~~~~ 261 (327)
.++...++ .||.+.....
T Consensus 234 W~Gls~~~~~~~lca~dv~~~ 254 (342)
T PF07893_consen 234 WFGLSSDGGGGHLCACDVSSA 254 (342)
T ss_pred EEEeccCCCCcEEEEEecccc
Confidence 55555433 7887776553
No 36
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=93.91 E-value=1.5 Score=40.57 Aligned_cols=118 Identities=13% Similarity=0.095 Sum_probs=71.2
Q ss_pred ccEEEEEEcCCCceEEcCCCCCc-eecCCCCeeeeCCcEEEEEeecC------C-CccEEEEEeCCCceeeeecCCCCCC
Q 038993 162 AAEVKVYSLARNSWKRIQDIPPC-YIARDSPGVYASGSLHWIVMAEY------G-RHDFILALDLSDEAYKELPLPPPVL 233 (327)
Q Consensus 162 ~~~~~Vys~~~~~Wr~~~~~p~~-~~~~~~~~v~~~G~lywl~~~~~------~-~~~~il~fD~~~e~~~~i~lP~~~~ 233 (327)
.....+|+..++.|+.+...... +.......|+-.|.+|..+.... . ..--+-.||+.+.+|..+.++.+..
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS 176 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS 176 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence 45678899999999998632211 11222223344576666554332 1 1123789999999999998876552
Q ss_pred cCCcceeeccEEEEeCCCcEEEEEecCCCc--CCCeEEEEEEeeCCCCCCeEEEEE
Q 038993 234 LETGCRVRANYFGVLDNGCLCLVSNYGGGY--RTPLSHVWVMTEYGVKDSWTKLFS 287 (327)
Q Consensus 234 ~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~--~~~~l~iW~l~~~~~~~~W~~~~~ 287 (327)
..... +++.+. .+|.+++...... ..--=+||+.+-. .-.|+|+-.
T Consensus 177 --~RSGH---RMvawK-~~lilFGGFhd~nr~y~YyNDvy~FdLd--tykW~Klep 224 (521)
T KOG1230|consen 177 --PRSGH---RMVAWK-RQLILFGGFHDSNRDYIYYNDVYAFDLD--TYKWSKLEP 224 (521)
T ss_pred --CCccc---eeEEee-eeEEEEcceecCCCceEEeeeeEEEecc--ceeeeeccC
Confidence 22233 778888 8898888754431 1112356665531 256998765
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=93.10 E-value=0.25 Score=30.64 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=31.6
Q ss_pred CeeeeCCcEEEEEeecC--CCccEEEEEeCCCceeeee-cCC
Q 038993 191 PGVYASGSLHWIVMAEY--GRHDFILALDLSDEAYKEL-PLP 229 (327)
Q Consensus 191 ~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i-~lP 229 (327)
..+.++|.+|.++.... .....+..||+.+.+|+.+ ++|
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 36788999999998765 4457899999999999987 443
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=92.62 E-value=11 Score=36.92 Aligned_cols=44 Identities=30% Similarity=0.389 Sum_probs=39.0
Q ss_pred CCCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChhhHHHH
Q 038993 4 RDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQ 47 (327)
Q Consensus 4 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~ 47 (327)
+..||-++...||.-|+.++++.++.||+.|+.++.+.......
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~ 151 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRM 151 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhh
Confidence 45799999999999999999999999999999999976665533
No 39
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=92.51 E-value=1.4 Score=42.48 Aligned_cols=156 Identities=11% Similarity=0.054 Sum_probs=90.0
Q ss_pred EEEEEcCCccccceeeccccCCCCCC------CceEEEE--EEEEEEEeCCC-CCCCccEEEEEEcCCCceEEcCCCCCc
Q 038993 114 TLAIWTHLRESTAFYRRQRLPWIPKR------LVAFFMG--LVRIARRSGDA-CFGGAAEVKVYSLARNSWKRIQDIPPC 184 (327)
Q Consensus 114 ~~~V~N~~~P~T~~~~~~~LP~~~~~------~~~~gfg--vv~v~~~~~~~-~~~~~~~~~Vys~~~~~Wr~~~~~p~~ 184 (327)
.++|+| --++.|. ........ ......+ ++.+.. .+ .......+..|+..|+.|+........
T Consensus 89 dl~~~d---~~~~~w~--~~~~~g~~p~~r~g~~~~~~~~~l~lfGG---~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~ 160 (482)
T KOG0379|consen 89 DLYVLD---LESQLWT--KPAATGDEPSPRYGHSLSAVGDKLYLFGG---TDKKYRNLNELHSLDLSTRTWSLLSPTGDP 160 (482)
T ss_pred eeEEee---cCCcccc--cccccCCCCCcccceeEEEECCeEEEEcc---ccCCCCChhheEeccCCCCcEEEecCcCCC
Confidence 589999 7777777 54322211 1111222 222211 11 233467899999999999988633221
Q ss_pred eec-CCCCeeeeCCcEEEEEeecCC--CccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCC
Q 038993 185 YIA-RDSPGVYASGSLHWIVMAEYG--RHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGG 261 (327)
Q Consensus 185 ~~~-~~~~~v~~~G~lywl~~~~~~--~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~ 261 (327)
+.. .....+..+-.+|..+..... ...-+.+||+++.+|..+....... ...... .+++.+ ++++++.....
T Consensus 161 P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P-~pR~gH---~~~~~~-~~~~v~gG~~~ 235 (482)
T KOG0379|consen 161 PPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP-SPRYGH---AMVVVG-NKLLVFGGGDD 235 (482)
T ss_pred CCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCC-CCCCCc---eEEEEC-CeEEEEecccc
Confidence 111 122345566777777765542 3567999999999999985433221 111222 567777 88888877652
Q ss_pred CcCCCeEEEEEEeeCCCCCCeEEE
Q 038993 262 GYRTPLSHVWVMTEYGVKDSWTKL 285 (327)
Q Consensus 262 ~~~~~~l~iW~l~~~~~~~~W~~~ 285 (327)
.....=++|.|+-.. .+|.++
T Consensus 236 -~~~~l~D~~~ldl~~--~~W~~~ 256 (482)
T KOG0379|consen 236 -GDVYLNDVHILDLST--WEWKLL 256 (482)
T ss_pred -CCceecceEeeeccc--ceeeec
Confidence 123356788887532 456643
No 40
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.40 E-value=2.9 Score=36.74 Aligned_cols=118 Identities=15% Similarity=0.217 Sum_probs=71.3
Q ss_pred EEeccCCcEEeeecCCCCEEEEEcCCccccceeeccccCCCCCC---CceEEE---EEEEEEEEeCCCCCCCccEEEEEE
Q 038993 96 VVGCCNGLLCIATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFM---GLVRIARRSGDACFGGAAEVKVYS 169 (327)
Q Consensus 96 ~~~sc~GLlcl~~~~~~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gf---gvv~v~~~~~~~~~~~~~~~~Vys 169 (327)
+.+.-+|-|-+... ..+.+.-.| |.++.-- .+|.+... ...+.- |-+++.. .....+.-|+
T Consensus 194 i~atpdGsvwyasl-agnaiarid---p~~~~ae--v~p~P~~~~~gsRriwsdpig~~witt-------wg~g~l~rfd 260 (353)
T COG4257 194 ICATPDGSVWYASL-AGNAIARID---PFAGHAE--VVPQPNALKAGSRRIWSDPIGRAWITT-------WGTGSLHRFD 260 (353)
T ss_pred eEECCCCcEEEEec-cccceEEcc---cccCCcc--eecCCCcccccccccccCccCcEEEec-------cCCceeeEeC
Confidence 44444555554432 345667779 9999666 88888653 111111 1455543 4567788899
Q ss_pred cCCCceEEcCCCCCceecCCCCeeeeC-CcEEEEEeecCCCccEEEEEeCCCceeeeecCCCCC
Q 038993 170 LARNSWKRIQDIPPCYIARDSPGVYAS-GSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPV 232 (327)
Q Consensus 170 ~~~~~Wr~~~~~p~~~~~~~~~~v~~~-G~lywl~~~~~~~~~~il~fD~~~e~~~~i~lP~~~ 232 (327)
..+.+|++-. +|..- ....+.+++ --.-|+..-. ...|+.||.++++|+++++|...
T Consensus 261 Ps~~sW~eyp-LPgs~--arpys~rVD~~grVW~sea~---agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 261 PSVTSWIEYP-LPGSK--ARPYSMRVDRHGRVWLSEAD---AGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred cccccceeee-CCCCC--CCcceeeeccCCcEEeeccc---cCceeecCcccceEEEecCCCCC
Confidence 9998998763 22111 112244443 2334664433 24799999999999999988654
No 41
>PF13964 Kelch_6: Kelch motif
Probab=89.83 E-value=0.82 Score=28.78 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=21.5
Q ss_pred CCCccEEEEEEcCCCceEEcCCCCC
Q 038993 159 FGGAAEVKVYSLARNSWKRIQDIPP 183 (327)
Q Consensus 159 ~~~~~~~~Vys~~~~~Wr~~~~~p~ 183 (327)
......+++|+..+++|+.++.+|.
T Consensus 24 ~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 24 GKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred CCccccEEEEcCCCCcEEECCCCCC
Confidence 4567899999999999999987763
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=89.81 E-value=0.89 Score=28.53 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=30.2
Q ss_pred CeeeeCCcEEEEEee--cC--CCccEEEEEeCCCceeeeecC
Q 038993 191 PGVYASGSLHWIVMA--EY--GRHDFILALDLSDEAYKELPL 228 (327)
Q Consensus 191 ~~v~~~G~lywl~~~--~~--~~~~~il~fD~~~e~~~~i~l 228 (327)
..+.+++++|.++.. .. .....+-.||+++.+|+.+..
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 367889999999887 11 455678999999999998753
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=87.80 E-value=1 Score=27.74 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=25.6
Q ss_pred EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCC
Q 038993 147 LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIP 182 (327)
Q Consensus 147 vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p 182 (327)
++.+..... .......+++|+..++.|+.++.+|
T Consensus 14 iyv~GG~~~--~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 14 IYVIGGYDG--NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEEBES--TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEeeecc--cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 555555432 3467889999999999999987665
No 44
>smart00612 Kelch Kelch domain.
Probab=86.63 E-value=1.8 Score=26.16 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=20.4
Q ss_pred CCccEEEEEEcCCCceEEcCCCCCc
Q 038993 160 GGAAEVKVYSLARNSWKRIQDIPPC 184 (327)
Q Consensus 160 ~~~~~~~Vys~~~~~Wr~~~~~p~~ 184 (327)
.....+++|+..++.|+.++.+|..
T Consensus 12 ~~~~~v~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 12 QRLKSVEVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred ceeeeEEEECCCCCeEccCCCCCCc
Confidence 4467899999999999998877653
No 45
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=83.91 E-value=1.8 Score=26.97 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=21.9
Q ss_pred eeee-CCcEEEEEeecCC--CccEEEEEeCCCceeeee
Q 038993 192 GVYA-SGSLHWIVMAEYG--RHDFILALDLSDEAYKEL 226 (327)
Q Consensus 192 ~v~~-~G~lywl~~~~~~--~~~~il~fD~~~e~~~~i 226 (327)
.+.+ ++.+|..+..... ...-+..||+++++|+.+
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 4555 5788888765541 234588999999999998
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=83.65 E-value=0.45 Score=44.07 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=34.9
Q ss_pred CCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChh
Q 038993 5 DPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPD 42 (327)
Q Consensus 5 ~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~ 42 (327)
-.||.+++..||+-|..|++.|++.+||.|+-+..|..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 36999999999999999999999999999999988744
No 47
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=82.15 E-value=35 Score=31.36 Aligned_cols=85 Identities=19% Similarity=0.338 Sum_probs=54.1
Q ss_pred EEEEEEcCCCceEEcCC--CCCceecCCCCeeeeCCcEEEEEeecCCCccEEEEEeCCCcee-----------eeecCCC
Q 038993 164 EVKVYSLARNSWKRIQD--IPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAY-----------KELPLPP 230 (327)
Q Consensus 164 ~~~Vys~~~~~Wr~~~~--~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~-----------~~i~lP~ 230 (327)
...-|+-++..|+...+ +|. ...+.|+..-=-|++.........|-+.|+.+..- .++..|.
T Consensus 200 GTysfDt~~~~W~~~GdW~LPF-----~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~ 274 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDWMLPF-----HGQAEYVPELDLWFGLSSDGGGGHLCACDVSSADSASPPPEWKLTWEELFPPE 274 (342)
T ss_pred EEEEEEcCCcceeeccceecCc-----CCccEECCCcCeEEEeccCCCCcEEEEEeccccccCCCCCcceeccccccccc
Confidence 56667777789999974 442 33467776666788776643235789999877322 2223332
Q ss_pred CCCcCCcceeeccEEEEeCCCcEEEEEec
Q 038993 231 PVLLETGCRVRANYFGVLDNGCLCLVSNY 259 (327)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~g~L~~~~~~ 259 (327)
.. ..... .|+-+++|+.|++...
T Consensus 275 ~~---~~~~~---~Lv~lG~grFCi~~~~ 297 (342)
T PF07893_consen 275 EW---RHVGA---TLVYLGSGRFCIVEFF 297 (342)
T ss_pred cc---cccCc---eEEECCCCCEEEEEEe
Confidence 21 11233 8888888999999864
No 48
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.15 E-value=11 Score=34.51 Aligned_cols=119 Identities=15% Similarity=0.114 Sum_probs=73.1
Q ss_pred ccEEEEEEcCCCceEEcCCC-CCceecCCCCeeeeCC-cEEEEEeecC--------------------------------
Q 038993 162 AAEVKVYSLARNSWKRIQDI-PPCYIARDSPGVYASG-SLHWIVMAEY-------------------------------- 207 (327)
Q Consensus 162 ~~~~~Vys~~~~~Wr~~~~~-p~~~~~~~~~~v~~~G-~lywl~~~~~-------------------------------- 207 (327)
...+..|+..+++|..++.. |.. . .....+..++ .+|....-..
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~g-l-~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~ 189 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTG-L-VGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKA 189 (381)
T ss_pred eeeeEEecCCCChhheeccccccc-c-ccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCH
Confidence 45678899999999988743 433 2 2223444444 6777653221
Q ss_pred ---CCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeE
Q 038993 208 ---GRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWT 283 (327)
Q Consensus 208 ---~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~ 283 (327)
....-+++||+.++.|+.. ..|...... . .++.-+ ++|.++...-.. +-++-.+|+.+=.+++..|.
T Consensus 190 ~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG----s---a~~~~~-n~~~lInGEiKp-GLRt~~~k~~~~~~~~~~w~ 260 (381)
T COG3055 190 EDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG----S---AVVIKG-NKLTLINGEIKP-GLRTAEVKQADFGGDNLKWL 260 (381)
T ss_pred HHhcccccccccccccchhhhcCcCcccCccC----c---ceeecC-CeEEEEcceecC-CccccceeEEEeccCceeee
Confidence 1223699999999999988 477655311 1 223333 778888765432 34466777766444467899
Q ss_pred EEEEEcCC
Q 038993 284 KLFSILEE 291 (327)
Q Consensus 284 ~~~~i~~~ 291 (327)
+.-..+.+
T Consensus 261 ~l~~lp~~ 268 (381)
T COG3055 261 KLSDLPAP 268 (381)
T ss_pred eccCCCCC
Confidence 88655544
No 49
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=76.50 E-value=5 Score=24.98 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=20.9
Q ss_pred CCCCCccEEEEEEcCCCceEEcCCCC
Q 038993 157 ACFGGAAEVKVYSLARNSWKRIQDIP 182 (327)
Q Consensus 157 ~~~~~~~~~~Vys~~~~~Wr~~~~~p 182 (327)
........+++|+.++..|+.+..+|
T Consensus 24 ~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 24 NGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CCCcccceeEEEECCCCEEeecCCCC
Confidence 34567789999999999999886543
No 50
>PLN02772 guanylate kinase
Probab=74.54 E-value=18 Score=33.77 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=51.5
Q ss_pred CCeeeeCCcEEEEEeecCC--CccEEEEEeCCCceeeee----cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCc
Q 038993 190 SPGVYASGSLHWIVMAEYG--RHDFILALDLSDEAYKEL----PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGY 263 (327)
Q Consensus 190 ~~~v~~~G~lywl~~~~~~--~~~~il~fD~~~e~~~~i----~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~ 263 (327)
...+.+++.+|.++...+. ....+..||..+.+|..- ..|... .+. .-+++++++|.++.-....
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r---~Gh-----Sa~v~~~~rilv~~~~~~~- 98 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC---KGY-----SAVVLNKDRILVIKKGSAP- 98 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC---Ccc-----eEEEECCceEEEEeCCCCC-
Confidence 3478889999999876542 446899999999999764 223322 111 3355656999998865543
Q ss_pred CCCeEEEEEEee
Q 038993 264 RTPLSHVWVMTE 275 (327)
Q Consensus 264 ~~~~l~iW~l~~ 275 (327)
.=+||.|+-
T Consensus 99 ---~~~~w~l~~ 107 (398)
T PLN02772 99 ---DDSIWFLEV 107 (398)
T ss_pred ---ccceEEEEc
Confidence 678999984
No 51
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=71.64 E-value=4.3 Score=25.17 Aligned_cols=23 Identities=17% Similarity=0.683 Sum_probs=14.8
Q ss_pred CCccEEEEEEcCCCceEEcCCCC
Q 038993 160 GGAAEVKVYSLARNSWKRIQDIP 182 (327)
Q Consensus 160 ~~~~~~~Vys~~~~~Wr~~~~~p 182 (327)
.....+++|+..+++|+.++.+|
T Consensus 26 ~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 26 SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EE---EEEEETTTTEEEE--SS-
T ss_pred cccCCEEEEECCCCEEEECCCCC
Confidence 35678899999999999997665
No 52
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=69.65 E-value=12 Score=23.24 Aligned_cols=25 Identities=40% Similarity=0.751 Sum_probs=20.8
Q ss_pred CCCccEEEEEEcCCCceEEcCCCCC
Q 038993 159 FGGAAEVKVYSLARNSWKRIQDIPP 183 (327)
Q Consensus 159 ~~~~~~~~Vys~~~~~Wr~~~~~p~ 183 (327)
......+.+|++.+++|+++..+|.
T Consensus 15 ~~~~nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 15 GTRLNDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred CCEecCEEEEECCCCEEEECCCCCC
Confidence 4566889999999999999976665
No 53
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=63.21 E-value=1e+02 Score=26.90 Aligned_cols=77 Identities=17% Similarity=0.093 Sum_probs=49.0
Q ss_pred CCCeeeeCCcEEEEEeecCCCccEEEEEeCCCceee-eecCCCCCCcCC-------cceeeccEEEEeCCCcEEEEEecC
Q 038993 189 DSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYK-ELPLPPPVLLET-------GCRVRANYFGVLDNGCLCLVSNYG 260 (327)
Q Consensus 189 ~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~~-------~~~~~~~~l~~~~~g~L~~~~~~~ 260 (327)
....|.-||.+|.-..... .|+.||+.++.-. ...||....... ...+ .|++=+ .-|.++....
T Consensus 71 GtG~vVYngslYY~~~~s~----~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~i---D~AvDE-~GLWvIYat~ 142 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKYNSR----NIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDI---DFAVDE-NGLWVIYATE 142 (250)
T ss_pred cCCeEEECCcEEEEecCCc----eEEEEECcCCcEEEEEECCccccccccceecCCCceE---EEEEcC-CCEEEEEecC
Confidence 3446778999999887653 7999999999998 778887653211 1122 455433 6677776654
Q ss_pred CCcCCCeEEEEEEee
Q 038993 261 GGYRTPLSHVWVMTE 275 (327)
Q Consensus 261 ~~~~~~~l~iW~l~~ 275 (327)
.. ...|.|=.|+.
T Consensus 143 ~~--~g~ivvskld~ 155 (250)
T PF02191_consen 143 DN--NGNIVVSKLDP 155 (250)
T ss_pred CC--CCcEEEEeeCc
Confidence 32 12455555553
No 54
>smart00284 OLF Olfactomedin-like domains.
Probab=60.43 E-value=95 Score=27.25 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=47.5
Q ss_pred CCCeeeeCCcEEEEEeecCCCccEEEEEeCCCceeeee-cCCCCCCcC-------CcceeeccEEEEeCCCcEEEEEecC
Q 038993 189 DSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKEL-PLPPPVLLE-------TGCRVRANYFGVLDNGCLCLVSNYG 260 (327)
Q Consensus 189 ~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~~-------~~~~~~~~~l~~~~~g~L~~~~~~~ 260 (327)
....|.-||++|.-.... ..|+.||+.+++.... .||...... ....+ .|++=+ .-|.++-...
T Consensus 76 GtG~VVYngslYY~~~~s----~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdi---DlAvDE-~GLWvIYat~ 147 (255)
T smart00284 76 GTGVVVYNGSLYFNKFNS----HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDI---DLAVDE-NGLWVIYATE 147 (255)
T ss_pred cccEEEECceEEEEecCC----ccEEEEECCCCcEEEEEecCccccccccccccCCCccE---EEEEcC-CceEEEEecc
Confidence 344688899999976554 3799999999999644 577532111 11123 555544 6677776543
Q ss_pred CCcCCCeEEEEEEee
Q 038993 261 GGYRTPLSHVWVMTE 275 (327)
Q Consensus 261 ~~~~~~~l~iW~l~~ 275 (327)
.. ...|.|=.|+.
T Consensus 148 ~~--~g~ivvSkLnp 160 (255)
T smart00284 148 QN--AGKIVISKLNP 160 (255)
T ss_pred CC--CCCEEEEeeCc
Confidence 31 23666666654
No 55
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.81 E-value=1.2e+02 Score=28.04 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=86.2
Q ss_pred CCeeEecccCCCc-ccccc-cCCCCCCCCceEEEeccCCcEE-eeecC--------CCCEEEEEcCCccccceeeccccC
Q 038993 66 TDTLYEEKYENGC-IATKL-DHPWMDSKQWIEVVGCCNGLLC-IATNR--------LPQTLAIWTHLRESTAFYRRQRLP 134 (327)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~~-~~p~~~~~~~~~~~~sc~GLlc-l~~~~--------~~~~~~V~N~~~P~T~~~~~~~LP 134 (327)
...+|.++..... .+..+ .+|-....+ .+.+.++|-|- +.... -....+.+| |.+.+|. +|.
T Consensus 57 G~afy~ldL~~~~k~W~~~a~FpG~~rnq--a~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~---p~~nsW~--kl~ 129 (381)
T COG3055 57 GTAFYVLDLKKPGKGWTKIADFPGGARNQ--AVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYD---PSTNSWH--KLD 129 (381)
T ss_pred CccceehhhhcCCCCceEcccCCCccccc--chheeeCCeEEEeeccccCCCCCceEeeeeEEec---CCCChhh--eec
Confidence 4567777765543 23322 244433222 34455666653 32211 124579999 9999999 987
Q ss_pred CCCCC----Cce-------EEE-E-------------EEEEE-----------EEeC--CCCCCCccEEEEEEcCCCceE
Q 038993 135 WIPKR----LVA-------FFM-G-------------LVRIA-----------RRSG--DACFGGAAEVKVYSLARNSWK 176 (327)
Q Consensus 135 ~~~~~----~~~-------~gf-g-------------vv~v~-----------~~~~--~~~~~~~~~~~Vys~~~~~Wr 176 (327)
...+. ... +.| | |-.+. .+++ ..+......+-+|+..++.|+
T Consensus 130 t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~ 209 (381)
T COG3055 130 TRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWR 209 (381)
T ss_pred cccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhh
Confidence 66554 111 111 1 00000 0000 012345667888999999999
Q ss_pred EcCCCCCceecCCCCeeeeCCcEEEEEeecC-----CCccEEEEEeCCCceeeee-cCCCCC
Q 038993 177 RIQDIPPCYIARDSPGVYASGSLHWIVMAEY-----GRHDFILALDLSDEAYKEL-PLPPPV 232 (327)
Q Consensus 177 ~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~-----~~~~~il~fD~~~e~~~~i-~lP~~~ 232 (327)
.....|....+. .++...|..-++..-+. +......-|.-..++|... ++|...
T Consensus 210 ~~G~~pf~~~aG--sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~ 269 (381)
T COG3055 210 NLGENPFYGNAG--SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPI 269 (381)
T ss_pred hcCcCcccCccC--cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCC
Confidence 998777655332 35555666455543221 2233456666778899887 666554
No 56
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=52.37 E-value=9.2 Score=33.49 Aligned_cols=47 Identities=26% Similarity=0.227 Sum_probs=36.6
Q ss_pred CCCCCcHHHHHHHHhcCC-cchhhhheeccccchhhcCChhhHHHHhh
Q 038993 3 DRDPLPLHIIDDILSRLH-VKQLLRLRCVSKTWRDLIDGPDFIKLQLS 49 (327)
Q Consensus 3 ~~~~LP~Dll~eIL~rLP-~ksl~r~r~VcK~W~~li~~~~F~~~~~~ 49 (327)
+..+||.+++.+||.||| -.+|.....|--.-..++++....+...+
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcq 248 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQ 248 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999 78999888887777777776655554433
No 57
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=51.73 E-value=23 Score=20.79 Aligned_cols=26 Identities=23% Similarity=0.102 Sum_probs=18.3
Q ss_pred CCeeeeCCcEEEEEeecCCCccEEEEEeCCC
Q 038993 190 SPGVYASGSLHWIVMAEYGRHDFILALDLSD 220 (327)
Q Consensus 190 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~ 220 (327)
..++..+|.+|...... .+.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~dg-----~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG-----NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS-----EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC-----EEEEEeCCC
Confidence 34578899999988866 599999875
No 58
>PF13013 F-box-like_2: F-box-like domain
Probab=49.88 E-value=7.5 Score=29.24 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=23.3
Q ss_pred CCCCcHHHHHHHHhcCCcchhhhheeccc
Q 038993 4 RDPLPLHIIDDILSRLHVKQLLRLRCVSK 32 (327)
Q Consensus 4 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK 32 (327)
+.+||+||+..|+..-...++...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 56799999999999999888765555554
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=48.42 E-value=1.9e+02 Score=25.26 Aligned_cols=108 Identities=15% Similarity=0.246 Sum_probs=58.9
Q ss_pred cCCcEEeeecCCCCEEEEEcCCccccceeeccccCCCCCCCceEEEEEEEEEEEeCCC---CCCCccEEEEEEcCCCc--
Q 038993 100 CNGLLCIATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFMGLVRIARRSGDA---CFGGAAEVKVYSLARNS-- 174 (327)
Q Consensus 100 c~GLlcl~~~~~~~~~~V~N~~~P~T~~~~~~~LP~~~~~~~~~gfgvv~v~~~~~~~---~~~~~~~~~Vys~~~~~-- 174 (327)
.+|=.|+.+. .+..+-+|| |..+... +-=. ..|..|.-+....++. .......+.+++.+||+
T Consensus 27 ~dGnY~ltcG-sdrtvrLWN---p~rg~li--ktYs------ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~ 94 (307)
T KOG0316|consen 27 VDGNYCLTCG-SDRTVRLWN---PLRGALI--KTYS------GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVD 94 (307)
T ss_pred cCCCEEEEcC-CCceEEeec---cccccee--eeec------CCCceeeeccccccccccccCCCCceEEEEEcccCeee
Confidence 4566777764 677899999 9888777 2100 1222233222111111 13456778899999874
Q ss_pred --eEEcCCCCCceecCCCCeeeeCCcEEEEEeecCCCccEEEEEeCCCceeeeecCC
Q 038993 175 --WKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLP 229 (327)
Q Consensus 175 --Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~lP 229 (327)
||--..---...+....+|.+.|.+ ...+-.+|-.+.++..|+.=
T Consensus 95 Rr~rgH~aqVNtV~fNeesSVv~Sgsf----------D~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 95 RRFRGHLAQVNTVRFNEESSVVASGSF----------DSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred eecccccceeeEEEecCcceEEEeccc----------cceeEEEEcccCCCCccchh
Confidence 4432221112223344466666554 23577788777777766443
No 60
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=47.70 E-value=1.5e+02 Score=27.93 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=39.0
Q ss_pred cEEEEEeecCCCccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCC-cCCCeEEEEEE
Q 038993 198 SLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGG-YRTPLSHVWVM 273 (327)
Q Consensus 198 ~lywl~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~-~~~~~l~iW~l 273 (327)
.+|..-... ...+.+++||+-+.+. .-|..+ . --..++||+|+++.....+ ....-|+||..
T Consensus 321 vLYvF~~~~-~g~~~Ll~YN~I~k~v---~tPi~c---h-------G~alf~DG~l~~fra~~~EptrvHp~QiWqT 383 (448)
T PF12458_consen 321 VLYVFYARE-EGRYLLLPYNLIRKEV---ATPIIC---H-------GYALFEDGRLVYFRAEGDEPTRVHPMQIWQT 383 (448)
T ss_pred EEEEEEECC-CCcEEEEechhhhhhh---cCCeec---c-------ceeEecCCEEEEEecCCCCcceeccceeecC
Confidence 677765554 3567889999876544 334333 1 1234567999999986332 23457889984
No 61
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=44.45 E-value=13 Score=33.71 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=31.7
Q ss_pred CCCCCcHHHHHHHHhcCC--------cchhhhheeccccchhhcCC
Q 038993 3 DRDPLPLHIIDDILSRLH--------VKQLLRLRCVSKTWRDLIDG 40 (327)
Q Consensus 3 ~~~~LP~Dll~eIL~rLP--------~ksl~r~r~VcK~W~~li~~ 40 (327)
..+.||.+++.+|+.|.- -++++.+..|||.|+.+..+
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 356899999999999986 33678999999999987764
No 62
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=44.38 E-value=75 Score=28.34 Aligned_cols=66 Identities=8% Similarity=0.083 Sum_probs=46.4
Q ss_pred CCCccEEEEEEcCCCceEEcCCC-C---CceecCCCCeeeeCCcEEEEEeecCCCccEEEEEeCCCceeeeecC
Q 038993 159 FGGAAEVKVYSLARNSWKRIQDI-P---PCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPL 228 (327)
Q Consensus 159 ~~~~~~~~Vys~~~~~Wr~~~~~-p---~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~l 228 (327)
......+.+|+..+.+|.....- . ....+.....+++.|.+-.-... ...+..||+.+.+|..+.-
T Consensus 12 sL~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~----~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 12 SLPCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTN----SSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CcCCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCC----ceeEEEEecCCCeeeecCC
Confidence 34688999999999999987632 1 22333445577777876654422 3479999999999987743
No 63
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=42.78 E-value=52 Score=17.96 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=17.5
Q ss_pred eeeCCcEEEEEeecCCCccEEEEEeCCCce
Q 038993 193 VYASGSLHWIVMAEYGRHDFILALDLSDEA 222 (327)
Q Consensus 193 v~~~G~lywl~~~~~~~~~~il~fD~~~e~ 222 (327)
+..+|.+|.-.... .+.++|.++.+
T Consensus 3 ~~~~~~v~~~~~~g-----~l~a~d~~~G~ 27 (33)
T smart00564 3 VLSDGTVYVGSTDG-----TLYALDAKTGE 27 (33)
T ss_pred EEECCEEEEEcCCC-----EEEEEEcccCc
Confidence 44567888766554 69999987654
No 64
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=42.36 E-value=2.5e+02 Score=25.07 Aligned_cols=147 Identities=14% Similarity=0.070 Sum_probs=0.0
Q ss_pred CCCccEEEEEEcCC-CceEEcCCCCCceecCCCCeeeeCCc-EEEEEeecCCCccEEEEEeCC-Cceeeee---cCCCCC
Q 038993 159 FGGAAEVKVYSLAR-NSWKRIQDIPPCYIARDSPGVYASGS-LHWIVMAEYGRHDFILALDLS-DEAYKEL---PLPPPV 232 (327)
Q Consensus 159 ~~~~~~~~Vys~~~-~~Wr~~~~~p~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fD~~-~e~~~~i---~lP~~~ 232 (327)
......+.+|+..+ +.++.+...+........ .+.-+|. +|....... .|.+|++. +.+++.+ +.+...
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l-~~spd~~~lyv~~~~~~----~i~~~~~~~~g~l~~~~~~~~~~~p 82 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVDVPGQVQPM-VISPDKRHLYVGVRPEF----RVLSYRIADDGALTFAAESPLPGSP 82 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEecCCCCccE-EECCCCCEEEEEECCCC----cEEEEEECCCCceEEeeeecCCCCc
Q ss_pred CcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCCcccCCCcccccccCC
Q 038993 233 LLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEP 312 (327)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 312 (327)
. .+....+|+..++...... .+.+|-+++.+ ........+....-+.....=-+....+++-..
T Consensus 83 ~----------~i~~~~~g~~l~v~~~~~~----~v~v~~~~~~g--~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~ 146 (330)
T PRK11028 83 T----------HISTDHQGRFLFSASYNAN----CVSVSPLDKDG--IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK 146 (330)
T ss_pred e----------EEEECCCCCEEEEEEcCCC----eEEEEEECCCC--CCCCceeeccCCCcccEeEeCCCCCEEEEeeCC
Q ss_pred CceEEEEecCCCCC
Q 038993 313 PSLLRGWHPTSFGA 326 (327)
Q Consensus 313 ~~~~~~~~~~~~~~ 326 (327)
...|.+||-++.|+
T Consensus 147 ~~~v~v~d~~~~g~ 160 (330)
T PRK11028 147 EDRIRLFTLSDDGH 160 (330)
T ss_pred CCEEEEEEECCCCc
No 65
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=42.02 E-value=3.1e+02 Score=26.04 Aligned_cols=110 Identities=15% Similarity=0.210 Sum_probs=69.0
Q ss_pred CCccEEEEEEcCCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecCCCccEEEEEeCC-CceeeeecCCCCCCcCCcc
Q 038993 160 GGAAEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLS-DEAYKELPLPPPVLLETGC 238 (327)
Q Consensus 160 ~~~~~~~Vys~~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~-~e~~~~i~lP~~~~~~~~~ 238 (327)
.....++||++.++. .+..+|.+- ..-..+.+..+=||++...+ ...|..+|++ .+.|..+++|.... ..
T Consensus 366 t~d~~vkiwdlks~~--~~a~Fpght--~~vk~i~FsENGY~Lat~ad--d~~V~lwDLRKl~n~kt~~l~~~~~-v~-- 436 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQT--NVAKFPGHT--GPVKAISFSENGYWLATAAD--DGSVKLWDLRKLKNFKTIQLDEKKE-VN-- 436 (506)
T ss_pred CCCceEEEEEcCCcc--ccccCCCCC--CceeEEEeccCceEEEEEec--CCeEEEEEehhhcccceeecccccc-ce--
Confidence 456778888888776 455555532 22236777778899986543 2359999996 46788888887541 01
Q ss_pred eeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEEcCCC
Q 038993 239 RVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQ 292 (327)
Q Consensus 239 ~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 292 (327)
. .-..-. |..-.+. +. .+.|+..+.. ..+|++........
T Consensus 437 s----~~fD~S-Gt~L~~~---g~----~l~Vy~~~k~--~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 437 S----LSFDQS-GTYLGIA---GS----DLQVYICKKK--TKSWTEIKELADHS 476 (506)
T ss_pred e----EEEcCC-CCeEEee---cc----eeEEEEEecc--cccceeeehhhhcc
Confidence 1 111223 5544443 22 7888887763 46899987776554
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=37.58 E-value=1e+02 Score=26.27 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=0.0
Q ss_pred CCcEEEEEeecCCCccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEe-CCCcEEEEE
Q 038993 196 SGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVL-DNGCLCLVS 257 (327)
Q Consensus 196 ~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~-~~g~L~~~~ 257 (327)
+|.|||...... .|..+|+.+.+.+.+.+|... .+... .+|+|++..
T Consensus 11 ~g~l~~~D~~~~----~i~~~~~~~~~~~~~~~~~~~-----------G~~~~~~~g~l~v~~ 58 (246)
T PF08450_consen 11 DGRLYWVDIPGG----RIYRVDPDTGEVEVIDLPGPN-----------GMAFDRPDGRLYVAD 58 (246)
T ss_dssp TTEEEEEETTTT----EEEEEETTTTEEEEEESSSEE-----------EEEEECTTSEEEEEE
T ss_pred CCEEEEEEcCCC----EEEEEECCCCeEEEEecCCCc-----------eEEEEccCCEEEEEE
No 67
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=36.85 E-value=1.5e+02 Score=27.15 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=59.8
Q ss_pred CCcEEEEEeecCCCccEEEEEeCCCceeeee---cCCCCCCcCCcceeeccEEEEeC--CCcEEEEEecCC--CcCCCeE
Q 038993 196 SGSLHWIVMAEYGRHDFILALDLSDEAYKEL---PLPPPVLLETGCRVRANYFGVLD--NGCLCLVSNYGG--GYRTPLS 268 (327)
Q Consensus 196 ~G~lywl~~~~~~~~~~il~fD~~~e~~~~i---~lP~~~~~~~~~~~~~~~l~~~~--~g~L~~~~~~~~--~~~~~~l 268 (327)
+|.+||..... .|...|++.+.-+.. .+-........+.+.--++..++ .|+|+++-+... ++....-
T Consensus 195 ~~~~~F~Sy~G-----~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 195 GGRLYFVSYEG-----NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp TTEEEEEBTTS-----EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred CCeEEEEecCC-----EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 35788887777 599999987754332 11111100122322111444442 389998876432 2356689
Q ss_pred EEEEEeeCCCCCCeEEEEEEcCCC-CCCCCcccCCCcccccccCCCceEEEEecCC
Q 038993 269 HVWVMTEYGVKDSWTKLFSILEEQ-VISPSPEFYDYSLPFESLEPPSLLRGWHPTS 323 (327)
Q Consensus 269 ~iW~l~~~~~~~~W~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (327)
+||+++-. .=.++.+|++.. ..+..---++--+.+.......-|.+||..+
T Consensus 270 eVWv~D~~----t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 270 EVWVYDLK----THKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEETT----TTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred EEEEEECC----CCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 99999852 234556666542 1111111122223333334456778888876
No 68
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=34.50 E-value=2.7e+02 Score=25.19 Aligned_cols=125 Identities=15% Similarity=0.258 Sum_probs=58.9
Q ss_pred EEEEEEEeCCCCCCCccEEEEEEcCC--CceEEcCCCCCce-------ecCCCCeeee-CCcEEEEEeecC--CC-ccEE
Q 038993 147 LVRIARRSGDACFGGAAEVKVYSLAR--NSWKRIQDIPPCY-------IARDSPGVYA-SGSLHWIVMAEY--GR-HDFI 213 (327)
Q Consensus 147 vv~v~~~~~~~~~~~~~~~~Vys~~~--~~Wr~~~~~p~~~-------~~~~~~~v~~-~G~lywl~~~~~--~~-~~~i 213 (327)
|+.++.............+.++-+.. ..|.....++... .....++|.. ||.|-+-..... .. ...+
T Consensus 72 IymLvG~y~~~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~Sl 151 (310)
T PF13859_consen 72 IYMLVGSYSRSAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSL 151 (310)
T ss_dssp EEEEEEEESS--SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEE
T ss_pred EEEEEEEEeccccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEE
Confidence 45554433322222344555554433 2698766544211 1123345666 888877654322 33 2667
Q ss_pred EEEeCC-Cceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEE
Q 038993 214 LALDLS-DEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTK 284 (327)
Q Consensus 214 l~fD~~-~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~ 284 (327)
+.|-.. ..+|..- -.|+ ..+.++ .++|.++|+|-|+..++.. .-.|+.-.|-| .+|+.
T Consensus 152 IiYS~d~g~~W~lskg~s~----~gC~~p---sv~EWe~gkLlM~~~c~~g----~rrVYeS~DmG--~tWte 211 (310)
T PF13859_consen 152 IIYSTDDGKTWKLSKGMSP----AGCSDP---SVVEWEDGKLLMMTACDDG----RRRVYESGDMG--TTWTE 211 (310)
T ss_dssp EEEESSTTSS-EE-S--------TT-EEE---EEEEE-TTEEEEEEE-TTS-------EEEESSTT--SS-EE
T ss_pred EEEECCCccceEeccccCC----CCcceE---EEEeccCCeeEEEEecccc----eEEEEEEcccc--eehhh
Confidence 777766 6777643 2222 122456 8999955999999998874 55666666655 58996
No 69
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=33.79 E-value=36 Score=25.41 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=26.8
Q ss_pred CCCCCCcHHHHHHHHhcCCcchhhhheecc
Q 038993 2 DDRDPLPLHIIDDILSRLHVKQLLRLRCVS 31 (327)
Q Consensus 2 ~~~~~LP~Dll~eIL~rLP~ksl~r~r~Vc 31 (327)
+++..+|.+++.-||.++.+..|.+.-.-|
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~n 31 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNN 31 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhC
Confidence 467789999999999999999999887766
No 70
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=33.15 E-value=3.3e+02 Score=23.71 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=60.8
Q ss_pred CccEEEEEEcCCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecCCCccEEEEEeCCC----ceeeeecCCCCCCcCC
Q 038993 161 GAAEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSD----EAYKELPLPPPVLLET 236 (327)
Q Consensus 161 ~~~~~~Vys~~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~----e~~~~i~lP~~~~~~~ 236 (327)
......+|+..++++|.+. .....++. ...+.-||.+.-...... ....+-.|+..+ ..|.+ .|..+. ..
T Consensus 44 ~~a~s~~yD~~tn~~rpl~-v~td~FCS-gg~~L~dG~ll~tGG~~~-G~~~ir~~~p~~~~~~~~w~e--~~~~m~-~~ 117 (243)
T PF07250_consen 44 GPAHSVEYDPNTNTFRPLT-VQTDTFCS-GGAFLPDGRLLQTGGDND-GNKAIRIFTPCTSDGTCDWTE--SPNDMQ-SG 117 (243)
T ss_pred ceEEEEEEecCCCcEEecc-CCCCCccc-CcCCCCCCCEEEeCCCCc-cccceEEEecCCCCCCCCceE--Cccccc-CC
Confidence 4667889999999999885 33333332 234556888876665542 334577788755 44543 333332 12
Q ss_pred cceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEE
Q 038993 237 GCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWV 272 (327)
Q Consensus 237 ~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~ 272 (327)
.+.. ....+.||++.+++..... ..+.|=
T Consensus 118 RWYp---T~~~L~DG~vlIvGG~~~~----t~E~~P 146 (243)
T PF07250_consen 118 RWYP---TATTLPDGRVLIVGGSNNP----TYEFWP 146 (243)
T ss_pred Cccc---cceECCCCCEEEEeCcCCC----cccccC
Confidence 2333 6777778999999887653 555553
No 71
>PTZ00334 trans-sialidase; Provisional
Probab=31.05 E-value=3e+02 Score=28.44 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=50.7
Q ss_pred CCeeee-CCcEEEEEeec--CCCccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCC
Q 038993 190 SPGVYA-SGSLHWIVMAE--YGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTP 266 (327)
Q Consensus 190 ~~~v~~-~G~lywl~~~~--~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~ 266 (327)
.++|.. ||.|-+-..-. ......++.|-..+..|.. |.......+.++ .++|.++|+|-|+..++..
T Consensus 263 GSGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~l---s~g~s~~gC~~P---~I~EWe~gkLlM~t~C~dG---- 332 (780)
T PTZ00334 263 GSGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNL---SKGMSADGCSDP---SVVEWKEGKLMMMTACDDG---- 332 (780)
T ss_pred cCeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEE---cCCCCCCCCCCC---EEEEEcCCeEEEEEEeCCC----
Confidence 446666 77776654322 2334557777666777843 222211122345 8999966999999988764
Q ss_pred eEEEEEEeeCCCCCCeEE
Q 038993 267 LSHVWVMTEYGVKDSWTK 284 (327)
Q Consensus 267 ~l~iW~l~~~~~~~~W~~ 284 (327)
.-.|+.-.|-| .+|+.
T Consensus 333 ~RrVYES~DmG--~tWtE 348 (780)
T PTZ00334 333 RRRVYESGDKG--DSWTE 348 (780)
T ss_pred CEEEEEECCCC--CChhh
Confidence 45666666654 57876
No 72
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=30.98 E-value=4.8e+02 Score=24.99 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=26.2
Q ss_pred eeeCCc-EEEEEeecCCCccEEEEEeCCCceeeeecCCCCC
Q 038993 193 VYASGS-LHWIVMAEYGRHDFILALDLSDEAYKELPLPPPV 232 (327)
Q Consensus 193 v~~~G~-lywl~~~~~~~~~~il~fD~~~e~~~~i~lP~~~ 232 (327)
.+-+|. .-..+... .++.+||+++.+.+.+..|...
T Consensus 265 f~p~G~~~i~~s~rr----ky~ysyDle~ak~~k~~~~~g~ 301 (514)
T KOG2055|consen 265 FAPNGHSVIFTSGRR----KYLYSYDLETAKVTKLKPPYGV 301 (514)
T ss_pred ecCCCceEEEecccc----eEEEEeeccccccccccCCCCc
Confidence 344666 55555554 3899999999999999877655
No 73
>PF15408 PH_7: Pleckstrin homology domain
Probab=27.48 E-value=17 Score=25.80 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=20.1
Q ss_pred cchhhhheeccccchhhcCChhhHH
Q 038993 21 VKQLLRLRCVSKTWRDLIDGPDFIK 45 (327)
Q Consensus 21 ~ksl~r~r~VcK~W~~li~~~~F~~ 45 (327)
++..+..+-|||+|-....+|.|.-
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhhh
Confidence 4556677789999999999999853
No 74
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=27.14 E-value=4.9e+02 Score=26.86 Aligned_cols=99 Identities=13% Similarity=0.082 Sum_probs=55.8
Q ss_pred EEEEEeCCCceee---eecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCC----CCCCeEE
Q 038993 212 FILALDLSDEAYK---ELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYG----VKDSWTK 284 (327)
Q Consensus 212 ~il~fD~~~e~~~---~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~----~~~~W~~ 284 (327)
..-.||..+..|. .|..|.+.. ... .+.-....+.-++....+. .+.||++.+.. ....|+.
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~----~va---t~~~~~~rs~~~vta~~dg----~~KiW~~~~~~n~~k~~s~W~c 501 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNA----FVA---TIFLNPTRSVRCVTASVDG----DFKIWVFTDDSNIYKKSSNWTC 501 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCce----eEE---EEEecCcccceeEEeccCC----eEEEEEEecccccCcCccceEE
Confidence 4456677777774 457786542 111 1111110221333343333 99999996542 2357999
Q ss_pred EEEEcCCCCCCCCcccCC-CcccccccCCCceEEEEecCC
Q 038993 285 LFSILEEQVISPSPEFYD-YSLPFESLEPPSLLRGWHPTS 323 (327)
Q Consensus 285 ~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 323 (327)
+..=.+...+.-...|.+ ..+..+++ +..|.+||+.+
T Consensus 502 ~~i~sy~k~~i~a~~fs~dGslla~s~--~~~Itiwd~~~ 539 (792)
T KOG1963|consen 502 KAIGSYHKTPITALCFSQDGSLLAVSF--DDTITIWDYDT 539 (792)
T ss_pred eeeeccccCcccchhhcCCCcEEEEec--CCEEEEecCCC
Confidence 876666666666667764 34444444 55677888876
No 75
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=25.92 E-value=5e+02 Score=23.54 Aligned_cols=114 Identities=18% Similarity=0.250 Sum_probs=59.3
Q ss_pred CccEEEEEEcCCCc--eEEcC--CCCCceecCCCCeee-eCC-cEEEEEeecCCCccEEEEEeCC--Cceeeee----cC
Q 038993 161 GAAEVKVYSLARNS--WKRIQ--DIPPCYIARDSPGVY-ASG-SLHWIVMAEYGRHDFILALDLS--DEAYKEL----PL 228 (327)
Q Consensus 161 ~~~~~~Vys~~~~~--Wr~~~--~~p~~~~~~~~~~v~-~~G-~lywl~~~~~~~~~~il~fD~~--~e~~~~i----~l 228 (327)
....+.+|+...+. ..... ..|.... .+..++ -+| .+|....... .|.+|++. +..++.+ .+
T Consensus 164 G~D~v~~~~~~~~~~~l~~~~~~~~~~G~G--PRh~~f~pdg~~~Yv~~e~s~----~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 164 GADRVYVYDIDDDTGKLTPVDSIKVPPGSG--PRHLAFSPDGKYAYVVNELSN----TVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp TTTEEEEEEE-TTS-TEEEEEEEECSTTSS--EEEEEE-TTSSEEEEEETTTT----EEEEEEEETTTTEEEEEEEEESC
T ss_pred CCCEEEEEEEeCCCceEEEeeccccccCCC--CcEEEEcCCcCEEEEecCCCC----cEEEEeecccCCceeEEEEeeec
Confidence 45678888887654 44322 1221110 000122 255 4565554442 56666665 6667655 45
Q ss_pred CCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEEcC
Q 038993 229 PPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILE 290 (327)
Q Consensus 229 P~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~ 290 (327)
|.... ...... .|....||+..++...... .|.++.+++. .+.-+++..++.
T Consensus 238 ~~~~~-~~~~~~---~i~ispdg~~lyvsnr~~~----sI~vf~~d~~--~g~l~~~~~~~~ 289 (345)
T PF10282_consen 238 PEGFT-GENAPA---EIAISPDGRFLYVSNRGSN----SISVFDLDPA--TGTLTLVQTVPT 289 (345)
T ss_dssp ETTSC-SSSSEE---EEEE-TTSSEEEEEECTTT----EEEEEEECTT--TTTEEEEEEEEE
T ss_pred ccccc-ccCCce---eEEEecCCCEEEEEeccCC----EEEEEEEecC--CCceEEEEEEeC
Confidence 55332 111222 6666767887777766554 9999999653 234555555554
No 76
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=25.26 E-value=4.4e+02 Score=22.64 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=65.5
Q ss_pred cEEEEE-EcCCC-ceEEcCCCCCceecCCCCeee--eCCcEEEEEeecCCCccEEEEEeCC-Cceeeee---cCCCCCCc
Q 038993 163 AEVKVY-SLARN-SWKRIQDIPPCYIARDSPGVY--ASGSLHWIVMAEYGRHDFILALDLS-DEAYKEL---PLPPPVLL 234 (327)
Q Consensus 163 ~~~~Vy-s~~~~-~Wr~~~~~p~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~il~fD~~-~e~~~~i---~lP~~~~~ 234 (327)
....++ |...+ +|......+...... ...+. -+|.+|.+.... ......++.-.. -++|+.. .+|...
T Consensus 133 ~~~~~~~S~D~G~tW~~~~~~~~~~~~~-e~~~~~~~dG~l~~~~R~~-~~~~~~~~~S~D~G~TWs~~~~~~~~~~~-- 208 (275)
T PF13088_consen 133 FSAFVYYSDDGGKTWSSGSPIPDGQGEC-EPSIVELPDGRLLAVFRTE-GNDDIYISRSTDGGRTWSPPQPTNLPNPN-- 208 (275)
T ss_dssp EEEEEEEESSTTSSEEEEEECECSEEEE-EEEEEEETTSEEEEEEEEC-SSTEEEEEEESSTTSS-EEEEEEECSSCC--
T ss_pred cceEEEEeCCCCceeeccccccccCCcc-eeEEEECCCCcEEEEEEcc-CCCcEEEEEECCCCCcCCCceecccCccc--
Confidence 444444 44433 698775442111111 11222 478999887763 222344444443 4578764 455432
Q ss_pred CCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEEcCCC
Q 038993 235 ETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQ 292 (327)
Q Consensus 235 ~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 292 (327)
... .+..+.||++.++..... ....+.|++-++.| ..|.+...|.-..
T Consensus 209 ---~~~---~~~~~~~g~~~~~~~~~~--~r~~l~l~~S~D~g--~tW~~~~~i~~~~ 256 (275)
T PF13088_consen 209 ---SSI---SLVRLSDGRLLLVYNNPD--GRSNLSLYVSEDGG--KTWSRPKTIDDGP 256 (275)
T ss_dssp ---EEE---EEEECTTSEEEEEEECSS--TSEEEEEEEECTTC--EEEEEEEEEEEEE
T ss_pred ---CCc---eEEEcCCCCEEEEEECCC--CCCceEEEEEeCCC--CcCCccEEEeCCC
Confidence 233 556677799999888322 13488888877644 6899998886544
No 77
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=24.86 E-value=5.5e+02 Score=23.62 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=61.1
Q ss_pred CCccEEEEEEcCCCceEEcCCCCCceecCCCCeeee-CCcE-EEEEeecCCCccEEEEEeCCCceeeee----cCCCCCC
Q 038993 160 GGAAEVKVYSLARNSWKRIQDIPPCYIARDSPGVYA-SGSL-HWIVMAEYGRHDFILALDLSDEAYKEL----PLPPPVL 233 (327)
Q Consensus 160 ~~~~~~~Vys~~~~~Wr~~~~~p~~~~~~~~~~v~~-~G~l-ywl~~~~~~~~~~il~fD~~~e~~~~i----~lP~~~~ 233 (327)
....++.+|++..+.-......-.......+.-++. ||.+ |.+..-. +.-.++.+|....+|..+ .+|....
T Consensus 164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~--stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN--STVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC--CEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 457788888888776544331111000111112333 6655 4444433 234456666666888776 5677654
Q ss_pred cCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCC
Q 038993 234 LETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYG 277 (327)
Q Consensus 234 ~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~ 277 (327)
. ..... .|-...||+.-+++..... .|.+..+++.+
T Consensus 242 g-~~~~a---aIhis~dGrFLYasNRg~d----sI~~f~V~~~~ 277 (346)
T COG2706 242 G-TNWAA---AIHISPDGRFLYASNRGHD----SIAVFSVDPDG 277 (346)
T ss_pred C-CCcee---EEEECCCCCEEEEecCCCC----eEEEEEEcCCC
Confidence 2 22222 6777778998888877654 66666677654
No 78
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.89 E-value=49 Score=25.88 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=17.6
Q ss_pred eeeeCCcEEEEEeecCCCccEEEEEeCCC
Q 038993 192 GVYASGSLHWIVMAEYGRHDFILALDLSD 220 (327)
Q Consensus 192 ~v~~~G~lywl~~~~~~~~~~il~fD~~~ 220 (327)
.+.-+|++||+....-...-.|+.|+..+
T Consensus 43 Ell~GGSlYWVikg~i~~RQ~Il~i~~~~ 71 (137)
T PF07370_consen 43 ELLDGGSLYWVIKGQIQCRQRILDIEEVT 71 (137)
T ss_pred HhccCCcEEEEECCEEEEeeeeeeeeEec
Confidence 34448999999754321222577777644
No 79
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=22.66 E-value=5.7e+02 Score=23.03 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=50.4
Q ss_pred Ceeee-CCcEEEEEeecCC---CccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCC
Q 038993 191 PGVYA-SGSLHWIVMAEYG---RHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTP 266 (327)
Q Consensus 191 ~~v~~-~G~lywl~~~~~~---~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~ 266 (327)
.++.+ +|.+......... ....++..|=..++|+....+... ...... .++++.||+|.++..... ..
T Consensus 150 ~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~--~~~~e~---~i~el~dG~l~~~~R~~~---~~ 221 (351)
T cd00260 150 SGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDA--GGCSEC---SVVELSDGKLYMYTRDNS---GG 221 (351)
T ss_pred CeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCC--CCCcCC---EEEEecCCEEEEEEeeCC---CC
Confidence 35666 4888776554321 123445555556789765443320 011233 788986699988766542 12
Q ss_pred eEEEEEEeeCCCCCCeEEEEEE
Q 038993 267 LSHVWVMTEYGVKDSWTKLFSI 288 (327)
Q Consensus 267 ~l~iW~l~~~~~~~~W~~~~~i 288 (327)
...+..-+|.| ..|+.....
T Consensus 222 ~~~~~~S~D~G--~tWs~~~~~ 241 (351)
T cd00260 222 RRPVYESRDMG--TTWTEALGT 241 (351)
T ss_pred cEEEEEEcCCC--cCcccCcCC
Confidence 56666666644 689986554
No 80
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=22.45 E-value=2.2e+02 Score=20.45 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=18.8
Q ss_pred CcEEEEEeecC-------------CCccEEEEEeCCCceeeee
Q 038993 197 GSLHWIVMAEY-------------GRHDFILALDLSDEAYKEL 226 (327)
Q Consensus 197 G~lywl~~~~~-------------~~~~~il~fD~~~e~~~~i 226 (327)
|.+|+...... ...-.++.||+.+.+.+.+
T Consensus 10 g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 10 GTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL 52 (89)
T ss_dssp --EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE
T ss_pred CEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe
Confidence 77777765432 2345799999999998766
No 81
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=22.24 E-value=5.5e+02 Score=25.37 Aligned_cols=107 Identities=13% Similarity=0.158 Sum_probs=54.3
Q ss_pred ccCCcEEeeecCCCCEEEEEcCCccccceeeccccCCCCCCCceEEEEEEEEEEEeCCC-----CCCCccEEEEEEcCCC
Q 038993 99 CCNGLLCIATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFMGLVRIARRSGDA-----CFGGAAEVKVYSLARN 173 (327)
Q Consensus 99 sc~GLlcl~~~~~~~~~~V~N~~~P~T~~~~~~~LP~~~~~~~~~gfgvv~v~~~~~~~-----~~~~~~~~~Vys~~~~ 173 (327)
..+|-++++.+ ++.++.||| |..++. |-.+...+..- |+.+.-....+ .......+++|++...
T Consensus 59 n~dG~lL~SGS-DD~r~ivWd---~~~~Kl----lhsI~TgHtaN---IFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 59 NADGELLASGS-DDTRLIVWD---PFEYKL----LHSISTGHTAN---IFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cCCCCEEeecC-CcceEEeec---chhcce----eeeeecccccc---eeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 35788887765 678999999 994443 33333221111 11110000000 1245778888888754
Q ss_pred ceEEcCC-C--CCc-eecC----CCCeeeeCC-cEEEEEeecCCCccEEEEEeCCC
Q 038993 174 SWKRIQD-I--PPC-YIAR----DSPGVYASG-SLHWIVMAEYGRHDFILALDLSD 220 (327)
Q Consensus 174 ~Wr~~~~-~--p~~-~~~~----~~~~v~~~G-~lywl~~~~~~~~~~il~fD~~~ 220 (327)
+=+..+. + +.. +.+. ..-++.-+| ..+|-+..+. .|.-+|+..
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG----tirQyDiRE 179 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG----TIRQYDIRE 179 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc----ceeeecccC
Confidence 3333321 1 111 1110 111333455 7888887765 678888765
No 82
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=21.94 E-value=6.4e+02 Score=24.08 Aligned_cols=64 Identities=14% Similarity=0.276 Sum_probs=43.3
Q ss_pred CCccEEEEEEcCCCceEEcCCCCCceecCC-CCeeeeCCcEEEEEeecCCCccEEEEEeCCCcee
Q 038993 160 GGAAEVKVYSLARNSWKRIQDIPPCYIARD-SPGVYASGSLHWIVMAEYGRHDFILALDLSDEAY 223 (327)
Q Consensus 160 ~~~~~~~Vys~~~~~Wr~~~~~p~~~~~~~-~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~ 223 (327)
.....+.||+..+++-..+.++|....... ..+..=+|.+|.-.........+|-.+|+.+.+-
T Consensus 364 ~~~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~ve~G~aYi~Vtt~~g~~~~IY~iDp~TatA 428 (435)
T PF14298_consen 364 SDAKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYVENGKAYIPVTTEDGSDPYIYKIDPATATA 428 (435)
T ss_pred CccceEEEEEccCceeEEeccCChhhccccccceEeeCCEEEEEEeecCCCceeEEEEcCccccc
Confidence 456778899999988777788886622222 2334447888877654432246899999987654
No 83
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=21.06 E-value=5.8e+02 Score=22.53 Aligned_cols=102 Identities=18% Similarity=0.142 Sum_probs=58.8
Q ss_pred eCCcEEEEEeecCCCccEEEEEeCCCcee-eeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEEE
Q 038993 195 ASGSLHWIVMAEYGRHDFILALDLSDEAY-KELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVM 273 (327)
Q Consensus 195 ~~G~lywl~~~~~~~~~~il~fD~~~e~~-~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l 273 (327)
-+|.+|=-+... .+-.|..+|+.+++. +..++|... +.- -+...+ ++|+.+.-.++ ..-++-.
T Consensus 54 ~~g~LyESTG~y--G~S~l~~~d~~tg~~~~~~~l~~~~-----FgE---Git~~~-d~l~qLTWk~~-----~~f~yd~ 117 (264)
T PF05096_consen 54 DDGTLYESTGLY--GQSSLRKVDLETGKVLQSVPLPPRY-----FGE---GITILG-DKLYQLTWKEG-----TGFVYDP 117 (264)
T ss_dssp ETTEEEEEECST--TEEEEEEEETTTSSEEEEEE-TTT-------EE---EEEEET-TEEEEEESSSS-----EEEEEET
T ss_pred CCCEEEEeCCCC--CcEEEEEEECCCCcEEEEEECCccc-----cce---eEEEEC-CEEEEEEecCC-----eEEEEcc
Confidence 356776655543 245799999999876 466998755 222 677788 99999988766 3333322
Q ss_pred eeCCCCCCeEEEEEEcCCCCCCCCccc----CCCcccccccCCCceEEEEecCCCC
Q 038993 274 TEYGVKDSWTKLFSILEEQVISPSPEF----YDYSLPFESLEPPSLLRGWHPTSFG 325 (327)
Q Consensus 274 ~~~~~~~~W~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (327)
....++.++..+. ..| ++..+ ...+..+.|.++||++|-
T Consensus 118 ------~tl~~~~~~~y~~-----EGWGLt~dg~~L--i~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 118 ------NTLKKIGTFPYPG-----EGWGLTSDGKRL--IMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp ------TTTEEEEEEE-SS-----S--EEEECSSCE--EEE-SSSEEEEE-TTT-S
T ss_pred ------ccceEEEEEecCC-----cceEEEcCCCEE--EEECCccceEEECCcccc
Confidence 3456666665541 222 12221 124557889999998874
No 84
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=20.68 E-value=5.1e+02 Score=21.71 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=23.7
Q ss_pred eeCCcEEEEEeecCCCccEEEEEeCCCceeeeecCCCC
Q 038993 194 YASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPP 231 (327)
Q Consensus 194 ~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~lP~~ 231 (327)
.+||-+ .+.... .+...|+.|.+++.+|.|+.
T Consensus 3 sCnGLl-c~~~~~-----~~~V~NP~T~~~~~LP~~~~ 34 (230)
T TIGR01640 3 PCDGLI-CFSYGK-----RLVVWNPSTGQSRWLPTPKS 34 (230)
T ss_pred ccceEE-EEecCC-----cEEEECCCCCCEEecCCCCC
Confidence 467888 443332 59999999999999976654
No 85
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=20.52 E-value=33 Score=23.01 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred CCCCCCCcHHHHHHHHhcCC-cchhh-hheeccccchhhc
Q 038993 1 MDDRDPLPLHIIDDILSRLH-VKQLL-RLRCVSKTWRDLI 38 (327)
Q Consensus 1 m~~~~~LP~Dll~eIL~rLP-~ksl~-r~r~VcK~W~~li 38 (327)
|+.++.+=.+-+-+-|..|| ++|+- =|+.-=|.|-+++
T Consensus 1 Me~is~~vk~~lP~YL~~lPiP~s~gg~f~Ls~kdWl~Lv 40 (64)
T PF10660_consen 1 MEAISKLVKVSLPNYLKSLPIPDSFGGFFKLSVKDWLALV 40 (64)
T ss_dssp ----------------------------------------
T ss_pred CcccccccccccccccccccccccccccccccHHHHHHHH
Confidence 77778887888888999999 66766 4556667887776
No 86
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=20.27 E-value=7.2e+02 Score=24.43 Aligned_cols=163 Identities=19% Similarity=0.209 Sum_probs=75.7
Q ss_pred CEEEEEcCCccccceeeccccCCCCCC----CceEEEE-----EEEEEEEeCCCCCCCccEEEEEEcCCCc--eEEcCC-
Q 038993 113 QTLAIWTHLRESTAFYRRQRLPWIPKR----LVAFFMG-----LVRIARRSGDACFGGAAEVKVYSLARNS--WKRIQD- 180 (327)
Q Consensus 113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~----~~~~gfg-----vv~v~~~~~~~~~~~~~~~~Vys~~~~~--Wr~~~~- 180 (327)
+.+.|+| -+|+||. +|....+ -..+||- ++++..... -..+.=+.|.+.... |+++..
T Consensus 57 DELHvYN---TatnqWf---~PavrGDiPpgcAA~GfvcdGtrilvFGGMvE----YGkYsNdLYELQasRWeWkrlkp~ 126 (830)
T KOG4152|consen 57 DELHVYN---TATNQWF---APAVRGDIPPGCAAFGFVCDGTRILVFGGMVE----YGKYSNDLYELQASRWEWKRLKPK 126 (830)
T ss_pred hhhhhhc---cccceee---cchhcCCCCCchhhcceEecCceEEEEccEee----eccccchHHHhhhhhhhHhhcCCC
Confidence 4689999 9999998 3322221 1124442 443322110 124444566666654 566642
Q ss_pred -----CCCceecCCCCeeeeCCcEEEEEeecC------------CCccEEEEEeCCCc--eeeee----cCCCCCCcCCc
Q 038993 181 -----IPPCYIARDSPGVYASGSLHWIVMAEY------------GRHDFILALDLSDE--AYKEL----PLPPPVLLETG 237 (327)
Q Consensus 181 -----~p~~~~~~~~~~v~~~G~lywl~~~~~------------~~~~~il~fD~~~e--~~~~i----~lP~~~~~~~~ 237 (327)
.|++.....+ -+..+.+.|.++.-.+ -...+++-+-..+. .|... .+|.....+.
T Consensus 127 ~p~nG~pPCPRlGHS-Fsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHT- 204 (830)
T KOG4152|consen 127 TPKNGPPPCPRLGHS-FSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHT- 204 (830)
T ss_pred CCCCCCCCCCccCce-eEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccce-
Confidence 2333322222 2334567787764322 12345555554444 34332 4555442111
Q ss_pred ceeeccEEEEeCCC-cEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCC
Q 038993 238 CRVRANYFGVLDNG-CLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVIS 295 (327)
Q Consensus 238 ~~~~~~~l~~~~~g-~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 295 (327)
. -+-.-+|. +--|+.+ .+..+.+-=++|.|+-. .-.|+|...=...++++
T Consensus 205 --A---ViY~eKDs~~skmvvy-GGM~G~RLgDLW~Ldl~--Tl~W~kp~~~G~~PlPR 255 (830)
T KOG4152|consen 205 --A---VIYTEKDSKKSKMVVY-GGMSGCRLGDLWTLDLD--TLTWNKPSLSGVAPLPR 255 (830)
T ss_pred --e---EEEEeccCCcceEEEE-cccccccccceeEEecc--eeecccccccCCCCCCc
Confidence 1 11111223 2222222 22223446689999863 35798865444444444
Done!