Query 038994
Match_columns 471
No_of_seqs 153 out of 1700
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15049 L-asparagine permease 100.0 7.4E-55 1.6E-59 441.6 47.6 395 29-429 24-443 (499)
2 TIGR00906 2A0303 cationic amin 100.0 1.2E-54 2.6E-59 443.8 45.0 422 28-456 23-555 (557)
3 PRK10655 potE putrescine trans 100.0 1.3E-54 2.7E-59 436.3 44.3 415 31-454 4-430 (438)
4 KOG1287 Amino acid transporter 100.0 8.6E-56 1.9E-60 424.9 31.2 425 26-455 5-443 (479)
5 TIGR00908 2A0305 ethanolamine 100.0 7.6E-54 1.6E-58 431.1 46.4 421 27-454 1-432 (442)
6 PRK10644 arginine:agmatin anti 100.0 1.4E-53 3E-58 429.0 47.8 418 29-457 4-433 (445)
7 PRK11357 frlA putative fructos 100.0 5.6E-54 1.2E-58 432.2 43.5 424 28-456 3-439 (445)
8 PRK11387 S-methylmethionine tr 100.0 2.2E-53 4.7E-58 430.1 44.9 418 29-453 10-457 (471)
9 TIGR00911 2A0308 L-type amino 100.0 1.8E-52 3.9E-57 426.9 46.6 420 26-450 35-468 (501)
10 PRK10746 putative transport pr 100.0 6E-52 1.3E-56 417.1 45.4 423 28-458 5-455 (461)
11 TIGR00905 2A0302 transporter, 100.0 4.8E-52 1E-56 420.5 44.9 419 29-456 3-440 (473)
12 PRK10249 phenylalanine transpo 100.0 1.1E-51 2.3E-56 415.6 45.0 392 28-427 16-429 (458)
13 TIGR00909 2A0306 amino acid tr 100.0 7.5E-52 1.6E-56 415.7 43.4 413 31-450 1-428 (429)
14 PRK10836 lysine transporter; P 100.0 3.1E-51 6.8E-56 415.9 46.3 390 27-424 9-433 (489)
15 PRK10435 cadB lysine/cadaverin 100.0 4.1E-51 8.9E-56 409.4 42.7 359 30-392 2-377 (435)
16 TIGR01773 GABAperm gamma-amino 100.0 1.2E-50 2.6E-55 408.8 44.0 416 28-451 7-448 (452)
17 PRK10238 aromatic amino acid t 100.0 2.2E-50 4.8E-55 405.8 45.0 393 28-428 7-421 (456)
18 PRK11049 D-alanine/D-serine/gl 100.0 2.1E-50 4.5E-55 407.8 45.0 389 27-423 14-429 (469)
19 PRK10580 proY putative proline 100.0 3.4E-50 7.3E-55 405.6 44.9 417 28-452 4-447 (457)
20 TIGR03810 arg_ornith_anti argi 100.0 5.4E-50 1.2E-54 405.0 44.3 412 33-455 1-434 (468)
21 TIGR00913 2A0310 amino acid pe 100.0 8.3E-50 1.8E-54 405.8 44.9 419 32-457 1-466 (478)
22 PRK10197 gamma-aminobutyrate t 100.0 5.8E-49 1.3E-53 394.5 44.0 408 43-458 2-435 (446)
23 COG0833 LysP Amino acid transp 100.0 2.8E-49 6E-54 381.0 34.9 386 30-423 41-462 (541)
24 COG1113 AnsP Gamma-aminobutyra 100.0 8.1E-49 1.8E-53 370.2 35.4 420 28-455 8-453 (462)
25 PRK11021 putative transporter; 100.0 1E-47 2.2E-52 382.7 45.4 352 35-395 1-363 (410)
26 TIGR00907 2A0304 amino acid pe 100.0 5.9E-48 1.3E-52 392.4 37.2 425 25-451 4-474 (482)
27 TIGR03428 ureacarb_perm permea 100.0 9.1E-47 2E-51 382.2 43.5 400 25-429 5-443 (475)
28 TIGR03813 put_Glu_GABA_T putat 100.0 5.4E-46 1.2E-50 376.7 46.4 388 33-426 1-420 (474)
29 TIGR00910 2A0307_GadC glutamat 100.0 5.1E-45 1.1E-49 370.1 44.5 389 31-424 2-421 (507)
30 COG0531 PotE Amino acid transp 100.0 1.4E-44 2.9E-49 367.9 42.6 382 26-409 5-404 (466)
31 KOG1289 Amino acid transporter 100.0 2.1E-46 4.6E-51 360.1 27.1 403 24-429 39-478 (550)
32 TIGR00930 2a30 K-Cl cotranspor 100.0 3.7E-44 8.1E-49 381.4 45.5 417 28-453 71-538 (953)
33 KOG1286 Amino acid transporter 100.0 1.1E-44 2.4E-49 362.4 34.3 381 28-415 25-449 (554)
34 PF13520 AA_permease_2: Amino 100.0 2.2E-43 4.7E-48 354.5 38.2 360 35-400 1-381 (426)
35 PRK15238 inner membrane transp 100.0 4.3E-42 9.2E-47 349.7 48.0 372 31-407 5-434 (496)
36 PF00324 AA_permease: Amino ac 100.0 2.4E-43 5.3E-48 358.2 9.8 368 41-409 3-412 (478)
37 TIGR00837 araaP aromatic amino 100.0 5.2E-29 1.1E-33 246.1 29.5 358 41-412 3-375 (381)
38 TIGR00912 2A0309 spore germina 99.9 1.6E-21 3.5E-26 191.1 34.4 287 33-326 1-294 (359)
39 KOG2082 K+/Cl- cotransporter K 99.9 8.4E-22 1.8E-26 193.4 22.0 385 59-453 141-646 (1075)
40 TIGR00796 livcs branched-chain 99.9 2.6E-19 5.7E-24 172.4 36.4 334 49-407 9-367 (378)
41 PRK10483 tryptophan permease; 99.9 7.6E-19 1.6E-23 170.3 35.9 372 30-415 6-392 (414)
42 KOG1288 Amino acid transporter 99.9 4.7E-21 1E-25 186.8 20.4 387 34-432 66-505 (945)
43 PF03222 Trp_Tyr_perm: Tryptop 99.9 8.7E-19 1.9E-23 171.7 36.2 366 34-414 2-383 (394)
44 PRK09664 tryptophan permease T 99.9 5.8E-18 1.2E-22 164.0 35.8 373 36-422 10-400 (415)
45 PRK15132 tyrosine transporter 99.9 6.2E-18 1.3E-22 164.8 36.2 367 36-417 4-383 (403)
46 TIGR00814 stp serine transport 99.9 4.4E-19 9.5E-24 173.4 26.7 288 42-330 10-313 (397)
47 PHA02764 hypothetical protein; 99.8 1.8E-18 3.8E-23 155.1 22.6 278 26-348 5-285 (399)
48 PRK13629 threonine/serine tran 99.8 2.2E-16 4.9E-21 153.0 32.6 371 42-416 26-432 (443)
49 COG0814 SdaC Amino acid permea 99.8 9.1E-16 2E-20 151.5 36.5 288 30-318 4-305 (415)
50 KOG2083 Na+/K+ symporter [Inor 99.7 5.9E-15 1.3E-19 143.6 20.6 398 29-433 24-450 (643)
51 PF03845 Spore_permease: Spore 99.6 8.3E-13 1.8E-17 127.2 29.1 282 34-327 1-291 (320)
52 KOG1303 Amino acid transporter 99.5 6.6E-11 1.4E-15 116.2 30.5 350 27-391 30-398 (437)
53 PF01235 Na_Ala_symp: Sodium:a 99.5 1.7E-10 3.8E-15 111.8 30.4 288 29-328 13-338 (416)
54 KOG1304 Amino acid transporter 99.4 2.4E-10 5.3E-15 110.6 29.4 242 32-277 44-306 (449)
55 PTZ00206 amino acid transporte 99.4 9E-10 2E-14 111.2 30.8 237 38-276 63-319 (467)
56 PLN03074 auxin influx permease 99.3 2.3E-09 4.9E-14 107.9 30.4 232 36-276 47-294 (473)
57 COG3949 Uncharacterized membra 99.3 1E-08 2.2E-13 94.2 31.5 266 41-319 9-280 (349)
58 COG1115 AlsT Na+/alanine sympo 99.3 1.4E-08 3E-13 97.6 31.0 287 30-328 58-382 (452)
59 PRK11375 allantoin permease; P 99.3 3.5E-08 7.6E-13 99.8 36.0 319 24-362 16-362 (484)
60 TIGR00835 agcS amino acid carr 99.3 1E-08 2.2E-13 100.2 30.8 283 32-327 44-364 (425)
61 PF01490 Aa_trans: Transmembra 99.0 8E-12 1.7E-16 125.0 -4.8 355 33-396 1-376 (409)
62 PRK11017 codB cytosine permeas 99.0 1.7E-05 3.7E-10 78.8 39.0 164 86-258 62-227 (404)
63 COG1457 CodB Purine-cytosine p 99.0 5.4E-06 1.2E-10 81.1 33.8 151 86-244 72-224 (442)
64 PRK09442 panF sodium/panthothe 98.9 3.1E-05 6.7E-10 79.1 39.2 283 30-321 38-344 (483)
65 TIGR02119 panF sodium/pantothe 98.8 0.00024 5.1E-09 72.4 41.4 281 30-322 37-344 (471)
66 PF05525 Branch_AA_trans: Bran 98.6 0.00027 5.8E-09 69.5 32.8 309 46-381 14-345 (427)
67 TIGR00800 ncs1 NCS1 nucleoside 98.6 0.00014 3E-09 73.4 32.2 232 29-265 8-258 (442)
68 TIGR00813 sss transporter, SSS 98.6 0.00014 3E-09 72.6 31.3 282 32-323 2-321 (407)
69 COG1953 FUI1 Cytosine/uracil/t 98.6 0.00077 1.7E-08 66.5 35.0 288 22-314 28-340 (497)
70 KOG1305 Amino acid transporter 98.6 1.7E-05 3.7E-10 78.0 21.8 241 32-276 3-257 (411)
71 COG0733 Na+-dependent transpor 98.5 0.00087 1.9E-08 65.3 32.6 276 38-318 12-325 (439)
72 PRK00701 manganese transport p 98.5 0.0014 3E-08 65.6 35.4 61 82-142 77-139 (439)
73 PRK15433 branched-chain amino 98.5 0.0015 3.3E-08 64.3 33.6 312 42-381 15-348 (439)
74 COG1114 BrnQ Branched-chain am 98.4 0.0022 4.7E-08 61.7 34.5 340 38-405 8-373 (431)
75 PRK12488 acetate permease; Pro 98.4 0.0028 6.1E-08 65.7 33.7 146 32-186 66-216 (549)
76 TIGR02358 thia_cytX probable h 98.3 0.004 8.7E-08 61.5 37.1 226 86-327 49-275 (386)
77 COG0591 PutP Na+/proline sympo 98.3 0.003 6.6E-08 64.4 32.6 157 30-189 35-197 (493)
78 PRK15419 proline:sodium sympor 98.3 0.006 1.3E-07 62.7 37.3 145 31-181 38-191 (502)
79 TIGR02121 Na_Pro_sym sodium/pr 98.3 0.0061 1.3E-07 62.3 39.7 282 31-323 34-345 (487)
80 PF00474 SSF: Sodium:solute sy 98.3 0.00025 5.5E-09 70.8 23.0 288 32-331 5-324 (406)
81 PF01566 Nramp: Natural resist 98.1 0.0045 9.7E-08 60.7 28.1 240 82-328 25-285 (358)
82 TIGR03648 Na_symport_lg probab 98.1 0.011 2.4E-07 61.4 31.6 139 31-178 30-173 (552)
83 PF02133 Transp_cyt_pur: Perme 98.1 5.2E-05 1.1E-09 76.6 13.4 161 30-193 4-179 (440)
84 PRK10484 putative transporter; 98.1 0.022 4.8E-07 58.8 41.0 289 30-323 35-354 (523)
85 TIGR02711 symport_actP cation/ 98.0 0.024 5.1E-07 58.9 35.6 145 31-184 65-214 (549)
86 COG1914 MntH Mn2+ and Fe2+ tra 98.0 0.019 4.2E-07 56.5 33.4 62 81-142 59-122 (416)
87 PF02705 K_trans: K+ potassium 98.0 0.0062 1.3E-07 61.4 26.0 258 122-394 105-377 (534)
88 PRK09395 actP acetate permease 97.9 0.036 7.9E-07 57.6 36.3 142 31-179 67-211 (551)
89 PLN00149 potassium transporter 97.5 0.062 1.3E-06 56.5 24.2 256 123-387 170-440 (779)
90 TIGR00794 kup potassium uptake 97.4 0.039 8.4E-07 57.4 21.7 256 122-389 140-409 (688)
91 KOG4303 Vesicular inhibitory a 97.3 0.0012 2.7E-08 61.2 8.4 354 29-395 111-483 (524)
92 PLN00148 potassium transporter 97.2 0.062 1.3E-06 56.4 20.8 251 123-386 170-435 (785)
93 PRK10745 trkD potassium transp 97.2 0.024 5.1E-07 57.9 17.4 256 122-391 116-385 (622)
94 PLN00151 potassium transporter 97.1 0.043 9.4E-07 57.6 18.5 252 123-387 247-513 (852)
95 PLN00150 potassium ion transpo 97.1 0.054 1.2E-06 56.8 18.6 252 123-387 187-453 (779)
96 PF02028 BCCT: BCCT family tra 96.5 1.2 2.6E-05 45.1 30.5 116 68-186 133-258 (485)
97 COG3158 Kup K+ transporter [In 96.4 0.65 1.4E-05 46.8 20.0 302 83-397 71-396 (627)
98 COG4147 DhlC Predicted symport 96.4 1.2 2.6E-05 44.0 29.7 310 51-374 61-420 (529)
99 COG4145 PanF Na+/panthothenate 95.5 2.4 5.3E-05 40.6 24.8 278 31-319 37-340 (473)
100 KOG2466 Uridine permease/thiam 95.4 1.9 4.2E-05 42.7 18.0 298 24-338 45-380 (572)
101 PF00209 SNF: Sodium:neurotran 94.7 6.2 0.00013 40.9 24.2 103 162-265 191-300 (523)
102 PRK09950 putative transporter; 94.0 8 0.00017 39.5 29.4 35 297-331 400-434 (506)
103 PF13906 AA_permease_C: C-term 93.3 0.28 6.1E-06 32.6 5.2 48 402-453 1-48 (51)
104 PF02554 CstA: Carbon starvati 91.4 14 0.00031 35.7 20.7 101 36-137 53-154 (376)
105 PRK03356 L-carnitine/gamma-but 91.2 19 0.00041 36.8 29.7 35 297-331 403-437 (504)
106 PRK09928 choline transport pro 91.2 23 0.00049 37.5 30.0 92 298-392 408-502 (679)
107 KOG3659 Sodium-neurotransmitte 89.6 27 0.00059 36.0 27.2 119 149-268 252-377 (629)
108 TIGR01197 nramp NRAMP (natural 88.3 28 0.00061 34.4 35.3 37 285-321 282-318 (390)
109 COG1292 BetT Choline-glycine b 85.9 44 0.00095 34.1 28.8 103 286-395 392-498 (537)
110 COG2271 UhpC Sugar phosphate p 77.5 48 0.001 33.0 12.2 24 308-331 67-90 (448)
111 KOG3660 Sodium-neurotransmitte 73.7 1.3E+02 0.0028 31.9 20.5 66 36-103 39-107 (629)
112 TIGR00842 bcct choline/carniti 72.7 1.1E+02 0.0024 30.9 31.1 19 32-50 34-52 (453)
113 COG4025 Predicted membrane pro 68.2 22 0.00049 31.7 6.8 16 319-334 55-70 (284)
114 KOG2349 Na+:iodide/myo-inosito 64.2 1.9E+02 0.0041 30.2 15.6 108 32-143 44-154 (585)
115 COG4146 Predicted symporter [G 61.9 1.6E+02 0.0035 28.7 20.4 46 98-143 104-150 (571)
116 PRK09804 putative cryptic C4-d 61.6 1E+02 0.0022 31.1 10.8 26 434-459 199-224 (455)
117 PF03169 OPT: OPT oligopeptide 59.4 2.4E+02 0.0053 29.9 16.6 46 225-270 442-489 (624)
118 PF03806 ABG_transport: AbgT p 59.0 1.1E+02 0.0023 31.3 10.6 94 79-178 307-406 (502)
119 PF06570 DUF1129: Protein of u 56.0 84 0.0018 27.9 8.7 17 441-457 184-200 (206)
120 TIGR00796 livcs branched-chain 53.6 2.3E+02 0.0051 27.9 14.4 74 101-178 259-332 (378)
121 PF14007 YtpI: YtpI-like prote 50.0 1.1E+02 0.0024 23.1 7.2 24 428-451 54-77 (89)
122 PTZ00206 amino acid transporte 49.0 3.1E+02 0.0066 27.9 13.1 56 283-338 121-176 (467)
123 PRK15433 branched-chain amino 45.0 3.1E+02 0.0067 27.6 11.3 72 102-178 270-341 (439)
124 PHA03049 IMV membrane protein; 44.6 37 0.00081 23.6 3.3 20 439-458 11-30 (68)
125 PF05297 Herpes_LMP1: Herpesvi 43.6 7.7 0.00017 35.6 0.0 16 344-359 76-91 (381)
126 PF14256 YwiC: YwiC-like prote 42.4 1.9E+02 0.004 23.6 10.4 21 375-395 32-52 (129)
127 PF09991 DUF2232: Predicted me 41.5 2.9E+02 0.0064 25.6 18.6 79 317-399 177-261 (290)
128 PF12794 MscS_TM: Mechanosensi 41.1 3.4E+02 0.0075 26.3 19.1 36 233-268 28-67 (340)
129 PRK00968 tetrahydromethanopter 41.0 38 0.00083 29.8 3.7 34 234-267 201-235 (240)
130 COG4858 Uncharacterized membra 40.9 2.4E+02 0.0052 24.5 8.3 11 350-360 101-111 (226)
131 TIGR01478 STEVOR variant surfa 37.4 72 0.0016 29.6 5.1 27 433-459 264-290 (295)
132 PTZ00370 STEVOR; Provisional 36.3 76 0.0016 29.5 5.1 27 433-459 260-286 (296)
133 PF05961 Chordopox_A13L: Chord 35.5 72 0.0016 22.4 3.7 21 438-458 10-30 (68)
134 PF05525 Branch_AA_trans: Bran 35.4 4.8E+02 0.01 26.3 15.5 74 101-178 265-338 (427)
135 PF11085 YqhR: Conserved membr 34.3 1.8E+02 0.0039 24.9 6.6 45 63-121 66-110 (173)
136 PF11174 DUF2970: Protein of u 33.7 1.5E+02 0.0032 20.2 5.0 24 219-242 4-27 (56)
137 COG3069 DcuC C4-dicarboxylate 33.3 4E+02 0.0086 26.2 9.4 44 319-362 84-127 (451)
138 COG4060 MtrD Tetrahydromethano 33.0 57 0.0012 27.6 3.4 32 236-267 193-225 (230)
139 COG3965 Predicted Co/Zn/Cd cat 30.2 3.8E+02 0.0082 24.8 8.3 20 408-427 90-109 (314)
140 PRK11383 hypothetical protein; 29.1 3.3E+02 0.0072 22.5 9.0 18 380-397 47-64 (145)
141 PF01102 Glycophorin_A: Glycop 28.8 63 0.0014 26.0 3.0 12 445-456 83-94 (122)
142 COG0833 LysP Amino acid transp 27.6 3.5E+02 0.0076 28.0 8.6 144 26-178 42-190 (541)
143 PF02009 Rifin_STEVOR: Rifin/s 27.3 74 0.0016 30.1 3.6 20 438-457 266-285 (299)
144 TIGR00771 DcuC c4-dicarboxylat 27.2 5E+02 0.011 25.7 9.7 29 335-363 47-75 (388)
145 PF02667 SCFA_trans: Short cha 26.3 6.9E+02 0.015 25.3 12.9 31 335-365 82-112 (453)
146 PF02652 Lactate_perm: L-lacta 26.1 7.6E+02 0.016 25.6 17.1 36 344-379 151-186 (522)
147 PRK13108 prolipoprotein diacyl 25.9 5.3E+02 0.011 26.2 9.5 18 435-452 259-276 (460)
148 COG2149 Predicted membrane pro 23.1 3.9E+02 0.0084 21.3 6.8 21 371-391 58-78 (120)
149 COG1114 BrnQ Branched-chain am 23.1 7.7E+02 0.017 24.7 15.4 74 101-178 267-340 (431)
150 PRK11056 hypothetical protein; 22.7 4E+02 0.0087 21.2 8.3 6 386-391 46-51 (120)
151 TIGR01695 mviN integral membra 22.5 8.1E+02 0.018 24.7 18.7 18 344-361 376-393 (502)
152 PHA02681 ORF089 virion membran 22.5 2.3E+02 0.005 20.8 4.5 21 435-455 8-28 (92)
153 COG1966 CstA Carbon starvation 21.7 9.2E+02 0.02 25.1 39.3 101 36-138 53-155 (575)
154 PF05915 DUF872: Eukaryotic pr 20.9 1.1E+02 0.0025 24.3 3.1 29 67-95 75-103 (115)
155 PF09991 DUF2232: Predicted me 20.7 6.7E+02 0.015 23.1 9.1 8 401-408 199-206 (290)
No 1
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=7.4e-55 Score=441.56 Aligned_cols=395 Identities=15% Similarity=0.170 Sum_probs=317.1
Q ss_pred ccccccccchhHHHHHHHhhcc-cccCChh-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 038994 29 TIKSKKLTLIPLIFLIYFEVAG-GPYGEEP-AVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRA 106 (471)
Q Consensus 29 ~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~-~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 106 (471)
+++||+++.+++.++++|.++| |+|..++ .+..+||. .+++|++++++ .++.+.+++|+++++|++||.|.|+++.
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~-~il~~li~~i~-~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA-LALVYLICGLF-SFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 4589999999999999999999 6766655 46668984 57799999985 8889999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 038994 107 FGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLS 186 (471)
Q Consensus 107 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 186 (471)
+||.+||++||.+++.|....+......+.+...+ +.. +..+.+++.++++++.+.+|++|+|..++++.+++.++++
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~ 179 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAF-GGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVL 179 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876666666666666543 211 1245667778888899999999999999999999988877
Q ss_pred HHHHHHHHhhc---cccCC--C---ccccCC--CCCCCchhHH---HHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHH
Q 038994 187 PFIIMSLAAIP---KIKPH--R---WFSSGQ--KGLKKDWNLF---FNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLV 253 (471)
Q Consensus 187 ~~~~~~~~~~~---~~~~~--~---~~~~~~--~~~~~~~~~~---~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~ 253 (471)
.++++++.++. ..++. + +..... +..+.++.++ +...+|+|.|+|.+++++||+|||+||+||++..
T Consensus 180 ~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~ 259 (499)
T PRK15049 180 AIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINS 259 (499)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHH
Confidence 66665544332 11111 1 111111 1112233333 3357899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCC
Q 038994 254 AVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFL 333 (471)
Q Consensus 254 ~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~l 333 (471)
++..++++|++..+.....+|+++....++|+.+++++.+.+....++.+..+++.+++.++.+++.+|++|+|||||.+
T Consensus 260 ~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~l 339 (499)
T PRK15049 260 VIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSA 339 (499)
T ss_pred HHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999998887778899999998888888899999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCcHHHHHHHHHHHHHhhc---c----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CCCCcc
Q 038994 334 PKFFGLRSKKFNTPWVGILVSTLITLGVSY---M----DFESIVASANFLYSLGMLLEFAAFIWLRMKKPQ---LKRPYR 403 (471)
Q Consensus 334 P~~~~~~~~r~~~P~~a~~~~~~~~~~~~~---~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 403 (471)
|++|+|+|| +++|++|++++.+++.+..+ . .++.+.++.+....+.|.+.+++.+++||+.++ .++|||
T Consensus 340 P~~f~kv~k-~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~ 418 (499)
T PRK15049 340 PSFMAKMSR-QHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFK 418 (499)
T ss_pred CHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCc
Confidence 999999995 89999999998887654321 1 277889999999999999999999999876443 357899
Q ss_pred cCCchhHHHHHHHHhHHHHHHHHHHh
Q 038994 404 VPMKLPGLVIMCLIPSGFLVVIMVVA 429 (471)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (471)
.|.+ +...+.+++.+++..+..+..
T Consensus 419 ~~~~-p~~~~~~l~~~~~~~~~~~~~ 443 (499)
T PRK15049 419 LPGA-PFTSWLTLLFLLSVLVLMAFD 443 (499)
T ss_pred ccCc-cHHHHHHHHHHHHHHHHHHHc
Confidence 9986 455555555555555544443
No 2
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=1.2e-54 Score=443.84 Aligned_cols=422 Identities=19% Similarity=0.236 Sum_probs=350.4
Q ss_pred cccccccccchhHHHHHHHhhcc-cccCChhHHH--hhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 038994 28 TTIKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVK--AAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWAD 104 (471)
Q Consensus 28 ~~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~--~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~ 104 (471)
+++++|+++.+++++++++.++| |+|.+++... .+||. .+++|+++++. +++.+++|+|+++++|++||.|.|++
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~-~l~~al~yaElas~~P~sGg~Y~y~~ 100 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLA-AVLSGFCYAEFGARVPKAGSAYLYSY 100 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCcceeeHH
Confidence 45689999999999999999999 7888877654 38884 78899999985 88899999999999999999999999
Q ss_pred HHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc-----------C-CC--hhHHHHHHHHHHHHHHHhhccc
Q 038994 105 RAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPL-----------E-SG--WPRSLAIMVSTCILSFLNFTGL 170 (471)
Q Consensus 105 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~-~~--~~~~~~~~~~~~~~~~~~~~g~ 170 (471)
+.+|+.+||++||.+++.+....+..+...+.|+...++.. . +. ......+++++++.+.+|.+|+
T Consensus 101 ~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gi 180 (557)
T TIGR00906 101 VTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGV 180 (557)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhch
Confidence 99999999999999999999998888888888887664310 0 10 1223456667778889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCC---C-CCCchhHH---HHHHHHHhhhhhhhhhhhhhccCC
Q 038994 171 TIVGYAAVLLGLVSLSPFIIMSLAAIPKIKPHRWFSSGQK---G-LKKDWNLF---FNTLFWNLNFWDNVSTLAGEVDRP 243 (471)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~---~~~~~~af~G~e~~~~~~~E~k~p 243 (471)
|.+++++.+++.++++.++++++.++.+.+.+++...... + .+.++.++ ....+|+|.|+|.+++++||+|||
T Consensus 181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP 260 (557)
T TIGR00906 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNP 260 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCc
Confidence 9999999999999999888887777766666665421110 0 12233333 345789999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 038994 244 QKTFPVALLVAVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQ 323 (471)
Q Consensus 244 ~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~ 323 (471)
+||+||+++.++++++++|++..++.....|+++.+ .++|+...+++.+.++...++.++.+.+.+++.++.+++.+|+
T Consensus 261 ~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~-~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRi 339 (557)
T TIGR00906 261 QRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLD-PDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRV 339 (557)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhC-cCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887654 4568888888877777888888888999999999999999999
Q ss_pred HHHHHhcCCCchhhhhccCCCCCcHHHHHHHHHHHHHhh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Q 038994 324 ILGMADLGFLPKFFGLRSKKFNTPWVGILVSTLITLGVS-YMDFESIVASANFLYSLGMLLEFAAFIWLRMK-------- 394 (471)
Q Consensus 324 l~~~a~d~~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------- 394 (471)
+|+|+|||.+|++|+|+|||+++|++++++..+++.++. +.+++.+.++.++..++.|.+++++.+.+|++
T Consensus 340 l~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~ 419 (557)
T TIGR00906 340 IYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQA 419 (557)
T ss_pred HHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999999999999999999987766 45789999999999999999999999998843
Q ss_pred ----------------------------------------------------------------------------CCCC
Q 038994 395 ----------------------------------------------------------------------------KPQL 398 (471)
Q Consensus 395 ----------------------------------------------------------------------------~~~~ 398 (471)
+|+.
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (557)
T TIGR00906 420 KDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQN 499 (557)
T ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2343
Q ss_pred --CCCcccCCchhHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038994 399 --KRPYRVPMKLPGLVIMCLIPSGFLVVIMVVATKIVYLVSGLMTLGAIGWYFFMKFLKS 456 (471)
Q Consensus 399 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 456 (471)
+|+||+|..+. +..+.....++.+...++.++....+|+++|.++|+.+.+++.
T Consensus 500 ~~~~~f~~p~~p~----~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s 555 (557)
T TIGR00906 500 KQKVAFKVPLVPF----LPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHS 555 (557)
T ss_pred CCCCCCCCCCchH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 56788887633 3334466667777788889999999999999999988765443
No 3
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1.3e-54 Score=436.25 Aligned_cols=415 Identities=17% Similarity=0.191 Sum_probs=339.5
Q ss_pred ccccccchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCC
Q 038994 31 KSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGP 109 (471)
Q Consensus 31 ~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 109 (471)
++|++++++++++++++++| |++.+|..++.+|+ ..+++|++++++ .++.+++|+|+++++|++||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~-~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVG-SMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHH-HHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 57899999999999999999 77888887777788 457899999985 8889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH
Q 038994 110 FFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFI 189 (471)
Q Consensus 110 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (471)
..||++||.+++.+.......+....+|+..++|...++++..++.++++++.+.+|++|+|..++++.+.++.+++.++
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~ 161 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVV 161 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877666667777888888875445567777788888899999999999999999988888877777
Q ss_pred HHHHHhhccccCCCcccc-CCCCCC--CchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHH
Q 038994 190 IMSLAAIPKIKPHRWFSS-GQKGLK--KDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIPL 266 (471)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~ 266 (471)
++.+.+....+++++.+. .+.+.. .++...+...+|+|.|+|.+++++||+|||+||+||++..+..+++++|++..
T Consensus 162 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~ 241 (438)
T PRK10655 162 GLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVST 241 (438)
T ss_pred HHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHH
Confidence 666655544444443221 111100 12223345578999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccCCCCC
Q 038994 267 FAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSKKFNT 346 (471)
Q Consensus 267 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~ 346 (471)
.+.....|+++..+++.|..+.+++..+++...++.+..+++.+++.++.+.+.+|++++++|||.+|++|+|+|| +++
T Consensus 242 ~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~v~~-~~t 320 (438)
T PRK10655 242 NVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVTK-VDA 320 (438)
T ss_pred HHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhCc-CCC
Confidence 8888888888877677898888888888877888888888899999999999999999999999999999999996 799
Q ss_pred cHHHHHHHHHHHHHhhcc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhHHHHHHHHh
Q 038994 347 PWVGILVSTLITLGVSYM--------DFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPYRVPMKLPGLVIMCLIP 418 (471)
Q Consensus 347 P~~a~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (471)
|+++++++.+++.++.+. .++.+.++.++...+.|.+.+++.+++|+|+|+.+||||.|. +...+.
T Consensus 321 P~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~~------~~~~~~ 394 (438)
T PRK10655 321 PVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVAN------FIAFVG 394 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHH------HHHHHH
Confidence 999999998887664421 367888999999999999999999999999888888888643 222233
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038994 419 SGFLVVIMVVATKIVYLVSGLMTLGAIGWYFFMKFL 454 (471)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 454 (471)
.+++++.....+......+..++++|..+|.+.+++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 430 (438)
T PRK10655 395 ALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPR 430 (438)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334334444444556677888999999999765443
No 4
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-56 Score=424.86 Aligned_cols=425 Identities=25% Similarity=0.365 Sum_probs=362.9
Q ss_pred CccccccccccchhHHHHHHHhhcc-cccCChhHHHh-hChHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHH
Q 038994 26 ATTTIKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKA-AGPLYA-LLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIW 102 (471)
Q Consensus 26 ~~~~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~-~G~~~~-~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~ 102 (471)
.++.+++|++++++.+++.+++++| |+|..|..+.. +|+... +.-|+..++ ++++.|+||+|+++.+|++||.|.|
T Consensus 5 ~~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi-~s~~galcyaELGT~ipksGgd~ay 83 (479)
T KOG1287|consen 5 GEEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGI-ISIIGALCYAELGTSIPKSGGDYAY 83 (479)
T ss_pred cccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHH-HHHHHHHHHHHHhccccCCCcchhh
Confidence 3456779999999999999999999 89999998765 666544 444555555 6999999999999999999999999
Q ss_pred HHHHhCChhHHHHHHHHHHHH-hhHHHHHHHHHHHH-HHHhccccC-CChhHHHHHHHHHHHHHHHhhccchhhHHHHHH
Q 038994 103 ADRAFGPFFGSLMGSWKFLSG-VINIAAFPVLCIDY-LKKVIHPLE-SGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVL 179 (471)
Q Consensus 103 ~~~~~g~~~g~~~g~~~~~~~-~~~~a~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 179 (471)
..++||+.+||.-.|..++.. ....+..+..+++| ++..+|.+. +.....+++.++++..+.+|+.++|...++|.+
T Consensus 84 i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ 163 (479)
T KOG1287|consen 84 ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQIV 163 (479)
T ss_pred HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 999999999999999988754 44558999999999 777787433 445667888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc---cccCCCccccCCCC---CCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHH
Q 038994 180 LGLVSLSPFIIMSLAAIP---KIKPHRWFSSGQKG---LKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLV 253 (471)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~ 253 (471)
++..+++.+.+.++.++. +++.+++.+..+++ ...++...+++..|+|.|||.....+||.|||+||.|||+.+
T Consensus 164 ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~i 243 (479)
T KOG1287|consen 164 FTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILI 243 (479)
T ss_pred HHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHH
Confidence 999999998888877765 33344433332232 233466778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCC
Q 038994 254 AVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFL 333 (471)
Q Consensus 254 ~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~l 333 (471)
++.+++++|+++.++...++++|+..+++....+.+++.+|... +++.+.+.+++++++++.+.+.||.++++||+|++
T Consensus 244 si~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~L 322 (479)
T KOG1287|consen 244 SIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHL 322 (479)
T ss_pred hhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCc
Confidence 99999999999999999999999998888888888888888866 88999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCcHHHHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhHHH
Q 038994 334 PKFFGLRSKKFNTPWVGILVSTLITLGVSYM-DFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPYRVPMKLPGLV 412 (471)
Q Consensus 334 P~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (471)
|+.|++.|+|+.+|..++++...++++..+. ++++++++.++.++..+.+.+++++++|+|+|+.+||+|+|...++..
T Consensus 323 P~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~~~ 402 (479)
T KOG1287|consen 323 PAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPILF 402 (479)
T ss_pred cHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHHHH
Confidence 9999999998889999999999999998876 599999999999999999999999999999999999999999876554
Q ss_pred HHHHHhHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038994 413 IMCLIPSGFLVVIMVVAT-KIVYLVSGLMTLGAIGWYFFMKFLK 455 (471)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~ 455 (471)
... ++.++...+..+ +....++.++++.|+.+|+...+++
T Consensus 403 ~~~---~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~ 443 (479)
T KOG1287|consen 403 LLI---CIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWK 443 (479)
T ss_pred HHH---HHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEec
Confidence 443 445545445555 4448899999999999997654333
No 5
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=7.6e-54 Score=431.12 Aligned_cols=421 Identities=21% Similarity=0.258 Sum_probs=333.5
Q ss_pred ccccccccccchhHHHHHHHhhccccc-CChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 038994 27 TTTIKSKKLTLIPLIFLIYFEVAGGPY-GEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADR 105 (471)
Q Consensus 27 ~~~~~~r~l~~~~~~~~~~~~~iG~~~-~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 105 (471)
+++++||+++.++.++++++.++|+.+ ..+..+..+||...+++++++++ ..++.+++++|+++++|++||.|.|+++
T Consensus 1 ~~~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 1 QHRQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVAT-MYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CCchhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 356789999999999999999988654 33555677899888899988887 4888999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 038994 106 AFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSL 185 (471)
Q Consensus 106 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 185 (471)
.+||..||.+||.+++.+....+..+...++|++.++|. .+.+..++++.+++..+|++|+|..++++.+..++++
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~----~~~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~ 155 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV----GPGWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAI 155 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999888874 2345666777788899999999999999999888887
Q ss_pred HHHHHHHHHhhccccCCCccccCCC---C-CCCchhH---HHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHH
Q 038994 186 SPFIIMSLAAIPKIKPHRWFSSGQK---G-LKKDWNL---FFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFT 258 (471)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~---~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~ 258 (471)
+.++++......+.++.++.+.... + .+.++.+ .+...+|+|.|+|.+++++||+|||+||+||+++.++.++
T Consensus 156 ~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~ 235 (442)
T TIGR00908 156 IALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTL 235 (442)
T ss_pred HHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHH
Confidence 7665554443333332222211111 0 1123323 3345689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchh
Q 038994 259 CVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAG--KWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKF 336 (471)
Q Consensus 259 ~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~ 336 (471)
.++|+.......+..|.++..++++|+.+.+++..+ .+...++.+..+++.+++.++.+++.+|++++|+|||.+|++
T Consensus 236 ~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~ 315 (442)
T TIGR00908 236 LALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPES 315 (442)
T ss_pred HHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH
Confidence 999998877777777777776667898888887754 345556666677888899999999999999999999999999
Q ss_pred hhhccCCCCCcHHHHHHHHHHHHHhhc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhHHHHHH
Q 038994 337 FGLRSKKFNTPWVGILVSTLITLGVSY-MDFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPYRVPMKLPGLVIMC 415 (471)
Q Consensus 337 ~~~~~~r~~~P~~a~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (471)
|+|+| |+|+|++|++++.+++.++.+ .+.+.+.++.++...+.|.+.+++.+++|+|+|+.+||||.|.+++. .+.+
T Consensus 316 ~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p~~~~~-~~l~ 393 (442)
T TIGR00908 316 LSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGGILT-PGVA 393 (442)
T ss_pred HHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCcchH-HHHH
Confidence 99999 699999999999998877654 35567778888899999999999999999999999999999987443 3444
Q ss_pred HHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038994 416 LIPSGFLVVIMVVATKIVYLVSGLMTLGAIGWYFFMKFL 454 (471)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 454 (471)
++.++++++..+..++..........+++.++|..++|+
T Consensus 394 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 432 (442)
T TIGR00908 394 LVLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRH 432 (442)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhhhc
Confidence 555555555555556655544555556666666655443
No 6
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=1.4e-53 Score=429.03 Aligned_cols=418 Identities=19% Similarity=0.266 Sum_probs=336.4
Q ss_pred ccccccccchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHh
Q 038994 29 TIKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAF 107 (471)
Q Consensus 29 ~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 107 (471)
.+++|+++++++++++++.++| |++..++.....|+ ..+++|+++++. .++.+++++|+++++|++||.|.|+++.+
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~-~l~~al~~aEL~s~~P~aGG~y~~~~~~~ 81 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIG-ALGLSMVYAKMSSLDPSPGGSYAYARRCF 81 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCChhHHHHHHc
Confidence 4568899999999999999999 78888887776666 467899998885 88999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 038994 108 GPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSP 187 (471)
Q Consensus 108 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 187 (471)
||.+||++||.+|+.+.............|...++|...+++...+..++++++.+.+|.+|+|..+++|.+.++++++.
T Consensus 82 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i~ 161 (445)
T PRK10644 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIP 161 (445)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 99999999999999887766666666677887777755445666667777888899999999999999999999988877
Q ss_pred HHHHHHHhhccccCCCccccCCCCCCCch---hHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHH
Q 038994 188 FIIMSLAAIPKIKPHRWFSSGQKGLKKDW---NLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLI 264 (471)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l 264 (471)
++++.+.++...+++++.+........++ ...+...+|+|.|+|.+++++||+|||+||+||++..++.+++++|++
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l 241 (445)
T PRK10644 162 IVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVL 241 (445)
T ss_pred HHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHH
Confidence 77666655443333322221100001122 234456789999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccCCC
Q 038994 265 PLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSKKF 344 (471)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~ 344 (471)
...+.....|+++...++.|+.++.++..+++...++.+..+++.+++.++.....+|..++|+|||.+|++|+|+|| +
T Consensus 242 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP~~~~~v~~-~ 320 (445)
T PRK10644 242 SSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNK-A 320 (445)
T ss_pred HHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCc-C
Confidence 999999999888777677899998888888877777888888899999999999999999999999999999999997 7
Q ss_pred CCcHHHHHHHHHHHHHhhcc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhHHHHHHH
Q 038994 345 NTPWVGILVSTLITLGVSYM--------DFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPYRVPMKLPGLVIMCL 416 (471)
Q Consensus 345 ~~P~~a~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (471)
++|+++++++.+++.++.+. .++.+.++.+....+.|++++++.+++|||+++.++|+ . +. ...
T Consensus 321 ~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~p~----~-~~---~~~ 392 (445)
T PRK10644 321 GTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPA----Y-LA---VTL 392 (445)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc----h-hH---HHH
Confidence 99999999999988775532 27778888889999999999999999988876544442 2 22 233
Q ss_pred HhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038994 417 IPSGFLVVIMVVATKIVYLVSGLMTLGAIGWYFFMKFLKSK 457 (471)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (471)
+..+.+++.....++.+.....++.+++..+|++.+++|++
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 433 (445)
T PRK10644 393 IAFVYCIWAVVGSGAKEVMWSFVTLMVITAFYALNYNRLHK 433 (445)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33444444445566667777777788888888776554433
No 7
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=5.6e-54 Score=432.16 Aligned_cols=424 Identities=19% Similarity=0.235 Sum_probs=334.5
Q ss_pred cccccccccchhHHHHHHHhhcc-cccCChhHHH-h-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 038994 28 TTIKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVK-A-AGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWAD 104 (471)
Q Consensus 28 ~~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~-~-~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~ 104 (471)
+++++|++++++.++++++.++| |++..++... . ++|...+++|++++++ .++.+++|+|+++++|++||.|.|++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~-~l~~al~~aEl~s~~P~~GG~y~y~~ 81 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLI-VIPQMCVYAELSTAYPENGADYVYLK 81 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCceeeHH
Confidence 45689999999999999999998 6787777643 3 4455678899998885 89999999999999999999999999
Q ss_pred HHhCChhHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 038994 105 RAFGPFFGSLMGSWKF-LSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLV 183 (471)
Q Consensus 105 ~~~g~~~g~~~g~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 183 (471)
+.+||.+||..||..+ .......+..+...++|+...+|. ++......++++..++..+|++|+|..+++|.+.+++
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~ 159 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI--DPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIA 159 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999755 445566677788888888776653 2233445666677778899999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCccccCC--CCCCCchhH---HHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHH
Q 038994 184 SLSPFIIMSLAAIPKIKPHRWFSSGQ--KGLKKDWNL---FFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFT 258 (471)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~ 258 (471)
+++.++++++.++...+++++.+... .+....+.+ .+...+|+|.|+|.+++++||+|||+||+||++..++.++
T Consensus 160 ~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~ 239 (445)
T PRK11357 160 KIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLV 239 (445)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHH
Confidence 98877766665543323333322111 110111333 3445789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCcccccccHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchh
Q 038994 259 CVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMI--AGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKF 336 (471)
Q Consensus 259 ~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~ 336 (471)
+++|++..++.....|+|+...++.|+.+.++.. .++....++.+..+++.+++.++.+.+.+|++|+++|||.+|++
T Consensus 240 ~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~ 319 (445)
T PRK11357 240 LVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKC 319 (445)
T ss_pred HHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHH
Confidence 9999999999988889888877778888888764 45556667777788889999999999999999999999999999
Q ss_pred hhhccCCCCCcHHHHHHHHHHHHHhh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhHHHHHH
Q 038994 337 FGLRSKKFNTPWVGILVSTLITLGVS-YMDFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPYRVPMKLPGLVIMC 415 (471)
Q Consensus 337 ~~~~~~r~~~P~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (471)
|+|+|||+|+|+++++++.+++.++. ..+++.+.++.+....+.|.+...+.+++|+|+ +.+||||.|..+... +.+
T Consensus 320 ~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~-~~~~~~k~p~~~~~~-~~~ 397 (445)
T PRK11357 320 FGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRD-DYKPLWRTPAFGLMT-TLA 397 (445)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCC-CCCCCcccCCchHHH-HHH
Confidence 99999999999999999999988766 467888888888888899998888888887664 567899999875433 333
Q ss_pred HHhHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 038994 416 LIPSGFLVVIMVVATK-IVYLVSGLMTLGAIGWYFFMKFLKS 456 (471)
Q Consensus 416 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~ 456 (471)
++..+++.+.....++ ..+..++.++++|+.+|++.+++++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 398 IASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheechhh
Confidence 4444444443333333 3455678888999999987665543
No 8
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=2.2e-53 Score=430.06 Aligned_cols=418 Identities=15% Similarity=0.170 Sum_probs=324.0
Q ss_pred ccccccccchhHHHHHHHhhcc-cccCChhH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 038994 29 TIKSKKLTLIPLIFLIYFEVAG-GPYGEEPA-VKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRA 106 (471)
Q Consensus 29 ~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~-~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 106 (471)
+++||+++.+++.++++|.++| |+|..++. +..+||...+++|++++++ .++.+++++|+++++|++||.|.|+++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~-~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALV-VYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 4589999999999999999999 77766665 4558886678899999985 8889999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 038994 107 FGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLS 186 (471)
Q Consensus 107 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 186 (471)
+||.+||.+||.+|+++....+......+.+++.++|. .+.+...+++.++++.+|++|+|..++++.+.+.++++
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ki~ 164 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ----VPVWPWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVV 164 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888877777777676666553 34445555566778899999999999999988888877
Q ss_pred HHHHHHHHhhcc------ccCC----CccccCCCCC-CCc---hhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHH
Q 038994 187 PFIIMSLAAIPK------IKPH----RWFSSGQKGL-KKD---WNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALL 252 (471)
Q Consensus 187 ~~~~~~~~~~~~------~~~~----~~~~~~~~~~-~~~---~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~ 252 (471)
.++++++.++.. .+.+ .+.+...++. ..+ +...+...+|+|.|+|.+++++||+|||+||+||++.
T Consensus 165 ~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~ 244 (471)
T PRK11387 165 TILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIR 244 (471)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHH
Confidence 766555443211 1111 1111111110 112 2233345789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Q 038994 253 VAVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGF 332 (471)
Q Consensus 253 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~ 332 (471)
.++.++.++|++..++.....|.++...+++|..+++++.++++...++.+..+++.+++.++.+++.+|++|+|+|||.
T Consensus 245 ~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~ 324 (471)
T PRK11387 245 TTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGT 324 (471)
T ss_pred HHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCC
Confidence 99999999999999999888998887767789999999988888888899999999999999999999999999999999
Q ss_pred CchhhhhccCCCCCcHHHHHHHHHHHHHhhc---cC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-----CC
Q 038994 333 LPKFFGLRSKKFNTPWVGILVSTLITLGVSY---MD----FESIVASANFLYSLGMLLEFAAFIWLRMKKPQL-----KR 400 (471)
Q Consensus 333 lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~---~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 400 (471)
+|++|+|+|| +++|++++++..+++.+..+ .. ++.+.++.++...+.|++.+++.+++|+|+++. +|
T Consensus 325 lP~~f~~~~~-~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~ 403 (471)
T PRK11387 325 LPACFARLTK-RGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSEL 403 (471)
T ss_pred cCHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999996 79999999988665544332 11 345677888888899999999999999887642 47
Q ss_pred CcccCCchhHHHHHHHHhHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHH
Q 038994 401 PYRVPMKLPGLVIMCLIPSGFLVVIMVVATK--IVYLVSGLMTLGAIGWYFFMKF 453 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~ 453 (471)
|||.|..+.. .+.+++.+++.........+ .....++.+.++++..|..+||
T Consensus 404 ~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (471)
T PRK11387 404 AYRAPWYPLT-PILGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQR 457 (471)
T ss_pred CccCCCccHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8999886433 33333333333332222211 2244566677777777776544
No 9
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=1.8e-52 Score=426.94 Aligned_cols=420 Identities=21% Similarity=0.325 Sum_probs=325.8
Q ss_pred CccccccccccchhHHHHHHHhhcc-cccCChhHH-HhhChH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHH
Q 038994 26 ATTTIKSKKLTLIPLIFLIYFEVAG-GPYGEEPAV-KAAGPL-YALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIW 102 (471)
Q Consensus 26 ~~~~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~-~~~G~~-~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~ 102 (471)
.++++++|+++.+++++++++.++| |++..+... ..+|+. ..+++|+++++ +.++.+++++|+++++|++||.|.|
T Consensus 35 ~~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i-~~~~~al~~aELas~~P~sGG~y~~ 113 (501)
T TIGR00911 35 GEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGI-FSIVGALVYAELGTTIPKSGGEYNY 113 (501)
T ss_pred ccccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCchhhh
Confidence 3557789999999999999999999 777777764 446663 34678888887 4899999999999999999999999
Q ss_pred HHHHhCChhHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH-hcccc-CCChhHHHHHHHHHHHHHHHhhccchhhHHHHHH
Q 038994 103 ADRAFGPFFGSLMGSWKFLS-GVINIAAFPVLCIDYLKK-VIHPL-ESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVL 179 (471)
Q Consensus 103 ~~~~~g~~~g~~~g~~~~~~-~~~~~a~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 179 (471)
+++.+||.+||+.+|..+.. +....+..+...+.|+.. .++.. .+.+...+++++++++.+.+|++|+|..++++.+
T Consensus 114 ~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i 193 (501)
T TIGR00911 114 ILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDI 193 (501)
T ss_pred HHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999988763 344556666667777633 44432 2335556777788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc---cCCCcccc-CCCC---CCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHH
Q 038994 180 LGLVSLSPFIIMSLAAIPKI---KPHRWFSS-GQKG---LKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALL 252 (471)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~---~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~ 252 (471)
.++++++.++++++.++... +.+...+. ..++ ...++...+...+|+|.|+|.+++++||+|||+||+||++.
T Consensus 194 ~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~ 273 (501)
T TIGR00911 194 FTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAII 273 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHH
Confidence 99999887776665554321 11111110 1111 11233344566789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Q 038994 253 VAVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGF 332 (471)
Q Consensus 253 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~ 332 (471)
.++.+++++|++..++.....|+++...++.+.....+...+ ....++.++..++.+++.++.+.+.+|++++++|||.
T Consensus 274 ~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~ 352 (501)
T TIGR00911 274 ISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGH 352 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999998888887766544344444444444 4566777888889999999999999999999999999
Q ss_pred CchhhhhccCCCCCcHHHHHHHHHHHHHhh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhHH
Q 038994 333 LPKFFGLRSKKFNTPWVGILVSTLITLGVS-YMDFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPYRVPMKLPGL 411 (471)
Q Consensus 333 lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (471)
+|++|+|+|+|+++|++++++..+++.+.. ..++..+.++.++...+.|++.+++.+++|+|+|+.+||||.|...+
T Consensus 353 lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~~~~-- 430 (501)
T TIGR00911 353 LPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFP-- 430 (501)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCccCchHHH--
Confidence 999999999999999999999988887655 34577777888888899999999999999999999999999987322
Q ss_pred HHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038994 412 VIMCLIPSGFLVVIMVVATKIVYLVSGLMTLGAIGWYFF 450 (471)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 450 (471)
...++.+++.++.....++........++++|..+|..
T Consensus 431 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 468 (501)
T TIGR00911 431 -VFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFF 468 (501)
T ss_pred -HHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHH
Confidence 23333344444444444555555667788888888864
No 10
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=6e-52 Score=417.06 Aligned_cols=423 Identities=14% Similarity=0.153 Sum_probs=336.4
Q ss_pred cccccccccchhHHHHHHHhhcc-cccCC-hhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 038994 28 TTIKSKKLTLIPLIFLIYFEVAG-GPYGE-EPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADR 105 (471)
Q Consensus 28 ~~~~~r~l~~~~~~~~~~~~~iG-~~~~~-~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 105 (471)
++++||+++.++..++++|+++| |+|.. ...+..+|| ..+++|++++++ .++.+++++|+++++|++||.|+|++|
T Consensus 5 ~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~-~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 5 KPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLF-VFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred chHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 45689999999999999999999 66554 445666899 578999999985 888999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 038994 106 AFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSL 185 (471)
Q Consensus 106 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 185 (471)
.+||.+||.+||.+|+.+....+.+....+.|++.++|. .+.+.+..++.++++.+|++|+|..++++...+.+++
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~----~~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki 158 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE----MAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKV 158 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888888999888774 3455666677788899999999999999998888887
Q ss_pred HHHHHHHHHhhc----c-ccC---CCccccCCC-C-CCCchhH---HHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHH
Q 038994 186 SPFIIMSLAAIP----K-IKP---HRWFSSGQK-G-LKKDWNL---FFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALL 252 (471)
Q Consensus 186 ~~~~~~~~~~~~----~-~~~---~~~~~~~~~-~-~~~~~~~---~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~ 252 (471)
..++++++.++. . .+. ..+.+.... + ...++.+ .+....|+|.|+|.+++.+||+|||+||+||++.
T Consensus 159 ~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~ 238 (461)
T PRK10746 159 TTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVG 238 (461)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHH
Confidence 766555543321 1 111 111111111 0 1223443 3455789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Q 038994 253 VAVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGF 332 (471)
Q Consensus 253 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~ 332 (471)
.+...+.++|++..++.....|+++...+++|+...+++.+.+....++.++.+++.+++.++.+++.+|++++++|||.
T Consensus 239 ~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~ 318 (461)
T PRK10746 239 KVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQ 318 (461)
T ss_pred HHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999988877889999998888887788888889999999999999999999999999999
Q ss_pred CchhhhhccCCCCCcHHHHHHHHHHHHHhh-----cc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCC
Q 038994 333 LPKFFGLRSKKFNTPWVGILVSTLITLGVS-----YM----DFESIVASANFLYSLGMLLEFAAFIWLRMKKPQL--KRP 401 (471)
Q Consensus 333 lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~-----~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 401 (471)
+|++|+|+|| +|+|++++++..+...+.. .. .++.+.++.++...+.|++.+++.+++||++|+. ++|
T Consensus 319 lP~~~~~~~~-~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~ 397 (461)
T PRK10746 319 LPAAMAKVSR-HGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHP 397 (461)
T ss_pred cCHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 9999999996 8999999998754433211 11 2567888888999999999999999999988763 578
Q ss_pred cccCCchhHHHHHHHHhHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038994 402 YRVPMKLPGLVIMCLIPSGFLVVIMVV-A-TKIVYLVSGLMTLGAIGWYFFMKFLKSKN 458 (471)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (471)
||.|..+....+. ++.++..+..... + +......+..+++++.+.|..+++.+|.|
T Consensus 398 ~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 455 (461)
T PRK10746 398 FRSILFPWANYLT-MAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNRHGK 455 (461)
T ss_pred CcCCCccHHHHHH-HHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9988876655543 3333333333322 2 12456677777888888888777666554
No 11
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=4.8e-52 Score=420.47 Aligned_cols=419 Identities=20% Similarity=0.281 Sum_probs=336.8
Q ss_pred ccccccccchhHHHHHHHhhcc-cccCChhHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CChHHHHHHH
Q 038994 29 TIKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKA-AGPLYALLGFMIFPFIWSIPEALITAELSTAFPG-DGGFVIWADR 105 (471)
Q Consensus 29 ~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~-~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~-~Gg~y~~~~~ 105 (471)
++++|+++++++.++++++++| |++..+..... +||...+++|++++++ .++.+++|+|+++++|+ +||.|+|+++
T Consensus 3 ~~~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~-~~~~al~~aEl~s~~P~~sGG~y~y~~~ 81 (473)
T TIGR00905 3 EAKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVG-MLALAFVFAILATKKPELDGGIYAYARE 81 (473)
T ss_pred cccCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCChhhhHHh
Confidence 3458899999999999999999 78888887655 7776778999999985 88899999999999999 9999999999
Q ss_pred HhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc--CCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 038994 106 AFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPL--ESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLV 183 (471)
Q Consensus 106 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 183 (471)
.+||..||..||.+++.+.......+....+++...+|.. .++++..+.++++.++.+.+|++|+|..+|++.+.+++
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~ 161 (473)
T TIGR00905 82 GFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIA 161 (473)
T ss_pred HcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9999999999999999888777777777778888877732 23566677788888889999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCcc----ccCCCCCCCchhH---HHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHH
Q 038994 184 SLSPFIIMSLAAIPKIKPHRWF----SSGQKGLKKDWNL---FFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVI 256 (471)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~ 256 (471)
+++.++++.+.++...+++++. +...++....+.+ .+...+|+|.|+|.+++++||+|| +||+||++..++.
T Consensus 162 ~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~ 240 (473)
T TIGR00905 162 KLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTL 240 (473)
T ss_pred HHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHH
Confidence 8888777766555433333221 1110110112333 344578999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcccccccH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch
Q 038994 257 FTCVAYLIPLFAVIGAVNVDQSQWDSGF-HATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPK 335 (471)
Q Consensus 257 ~~~~~y~l~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~ 335 (471)
+++++|++...+.....|+++..++++| ..++.++..+++...++.+..+++.+++.++.+.+.+|.+|+|+|||.+|+
T Consensus 241 i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~ 320 (473)
T TIGR00905 241 GALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPK 320 (473)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH
Confidence 9999999999998888898888777788 778888888888888888889999999999999999999999999999999
Q ss_pred hhhhccCCCCCcHHHHHHHHHHHHHhhc------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchh
Q 038994 336 FFGLRSKKFNTPWVGILVSTLITLGVSY------MDFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPYRVPMKLP 409 (471)
Q Consensus 336 ~~~~~~~r~~~P~~a~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (471)
+|+|+|| +++|+++++++.+++.++.+ .+++.+.++.++...+.|.+++++.+++|+|++ .++ .+.|..
T Consensus 321 ~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~-~~~-~~~~~~-- 395 (473)
T TIGR00905 321 IFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGT-YPK-IKNRKA-- 395 (473)
T ss_pred HHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccc-cccchH--
Confidence 9999998 59999999999888765442 247888899999999999999999999988762 111 122222
Q ss_pred HHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038994 410 GLVIMCLIPSGFLVVIMVVATKIVYLVSGLMTLGAIGWYFFMKFLKS 456 (471)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 456 (471)
.+...+..+.+.+.....++.....+++++++|...|.+.++++|
T Consensus 396 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 440 (473)
T TIGR00905 396 --LIVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKERG 440 (473)
T ss_pred --HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 223333344444555556677777888899999999987665543
No 12
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=1.1e-51 Score=415.63 Aligned_cols=392 Identities=17% Similarity=0.195 Sum_probs=318.0
Q ss_pred cccccccccchhHHHHHHHhhcc-cccCChhH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 038994 28 TTIKSKKLTLIPLIFLIYFEVAG-GPYGEEPA-VKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADR 105 (471)
Q Consensus 28 ~~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~-~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 105 (471)
+++++|+++.+++.++++|.++| |+|..++. +..+|| ..+++|++++++ .++.+++++|+++++|++||.|.|+++
T Consensus 16 ~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~-~~~~~~~~aEl~~~~P~~Gg~~~y~~~ 93 (458)
T PRK10249 16 EPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGII-AFLIMRQLGEMVVEEPVSGSFAHFAYK 93 (458)
T ss_pred chhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 34689999999999999999999 66666554 555888 578899999985 888999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 038994 106 AFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSL 185 (471)
Q Consensus 106 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 185 (471)
.+||.+||.+||.+|+.+....+.+....+.|++.++|. .+.+.+..++.++...+|++|+|..++++.+.+.+++
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv 169 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD----VPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKV 169 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----CcHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 999999999999999999888888888888888877764 3555667778888999999999999999998888887
Q ss_pred HHHHHHHHHhh---ccccC---CCccccCCCC--CCCchhH---HHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHH
Q 038994 186 SPFIIMSLAAI---PKIKP---HRWFSSGQKG--LKKDWNL---FFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVA 254 (471)
Q Consensus 186 ~~~~~~~~~~~---~~~~~---~~~~~~~~~~--~~~~~~~---~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~ 254 (471)
+.++++++.++ ...++ ..+.+....+ ...+|.+ .+...+|+|.|+|.+++++||+|||+||+||++..+
T Consensus 170 ~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~ 249 (458)
T PRK10249 170 LAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQV 249 (458)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHH
Confidence 66555444332 11111 1111110000 1234444 345578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCc
Q 038994 255 VIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLP 334 (471)
Q Consensus 255 ~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP 334 (471)
+..+.++|++.........|+++...+++|+.+++++..++....++.++.+++.+++.++.+++.+|++|+++|||.+|
T Consensus 250 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP 329 (458)
T PRK10249 250 VYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAP 329 (458)
T ss_pred HHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 99999999999888888888887766678999999988888888888888899999999999999999999999999999
Q ss_pred hhhhhccCCCCCcHHHHHHHHHHHHHhhcc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCCCCCCcccC
Q 038994 335 KFFGLRSKKFNTPWVGILVSTLITLGVSYM-------DFESIVASANFLYSLGMLLEFAAFIWLRM--KKPQLKRPYRVP 405 (471)
Q Consensus 335 ~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 405 (471)
++|+|+|| +++|++|++++.+++.+..+. .++.+.++.+....+.|.+.+++.+++|| |+++.++|||.|
T Consensus 330 ~~~~kv~~-~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~~~ 408 (458)
T PRK10249 330 KFLTRVSR-RGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKAL 408 (458)
T ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCC
Confidence 99999996 799999999999888765422 26778888888999999999999999986 445557899998
Q ss_pred CchhHHHHHHHHhHHHHHHHHH
Q 038994 406 MKLPGLVIMCLIPSGFLVVIMV 427 (471)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~ 427 (471)
.++ ...+.+++.+.+..+..+
T Consensus 409 ~~p-~~~~~~l~~~~~~~v~~~ 429 (458)
T PRK10249 409 LYP-FGNYLCIAFLGMILLLMC 429 (458)
T ss_pred Ccc-HHHHHHHHHHHHHHHHHH
Confidence 764 444444555555544444
No 13
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=7.5e-52 Score=415.71 Aligned_cols=413 Identities=19% Similarity=0.256 Sum_probs=345.7
Q ss_pred ccccccchhHHHHHHHhhcc-cccCChhHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhC
Q 038994 31 KSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKA-AGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFG 108 (471)
Q Consensus 31 ~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~-~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g 108 (471)
+||+++.++.+++.++.++| +++..+..... +|+ ..+++|++++++ .++.+++++|+++++|++||.|.|++|.+|
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 78 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLT-ALFIALVYAELAAMLPVAGSPYTYAYEAMG 78 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCcceeeHHHHhC
Confidence 47999999999999999999 66777766443 677 456788888885 778899999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHH------------HHHHHHHHHHHHHhhccchhhHHH
Q 038994 109 PFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRS------------LAIMVSTCILSFLNFTGLTIVGYA 176 (471)
Q Consensus 109 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~ 176 (471)
|..|++.||.+++.+....+..+...++++..+++....+.+.. ...+++.++.+.+|++|+|..+|+
T Consensus 79 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~ 158 (429)
T TIGR00909 79 ELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKV 158 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 99999999999999999999999999999888776321111111 345678888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCccccCCCCCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHH
Q 038994 177 AVLLGLVSLSPFIIMSLAAIPKIKPHRWFSSGQKGLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVI 256 (471)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~ 256 (471)
+.+...+++..++++++.++.+.+.+++.+..+. ...++...+...+|+|.|+|.+.+++||+|||+|++||++..++.
T Consensus 159 ~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~ 237 (429)
T TIGR00909 159 NDILVVLKVAALLLFAALGAIHFASNNYTPFMPM-GFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLI 237 (429)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCC-cHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHH
Confidence 9999999998877766666655555555443221 122334445567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchh
Q 038994 257 FTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKF 336 (471)
Q Consensus 257 ~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~ 336 (471)
++.++|++..+......|.++...++.|...+.++..+++...++.+..+++.+++.++.+.+.+|.+++++|||.+|++
T Consensus 238 ~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~ 317 (429)
T TIGR00909 238 VVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGS 317 (429)
T ss_pred HHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 99999999999998888888877778898888888888888889999999999999999999999999999999999999
Q ss_pred hhhccCCCCCcHHHHHHHHHHHHHhh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhHHHHHH
Q 038994 337 FGLRSKKFNTPWVGILVSTLITLGVS-YMDFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPYRVPMKLPGLVIMC 415 (471)
Q Consensus 337 ~~~~~~r~~~P~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (471)
|+|+|+|+++|++++++..+++.++. ..+++.+.++.+....+.|++.+++.+++|+|+|+.+||||.|..+...
T Consensus 318 ~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~~---- 393 (429)
T TIGR00909 318 LSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLP---- 393 (429)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchHHH----
Confidence 99999989999999999998888765 4568899999999999999999999999999999999999998864322
Q ss_pred HHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038994 416 LIPSGFLVVIMVVATKIVYLVSGLMTLGAIGWYFF 450 (471)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 450 (471)
.+....+.+.....++.+....+.+.++|..+|..
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 394 VLVVSYCIYLLLNLGPGTTVWFLVWMLLGSVFYFI 428 (429)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 22223333444556788888999999999998854
No 14
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=3.1e-51 Score=415.91 Aligned_cols=390 Identities=14% Similarity=0.140 Sum_probs=306.1
Q ss_pred ccccccccccchhHHHHHHHhhcc-cccCChhH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 038994 27 TTTIKSKKLTLIPLIFLIYFEVAG-GPYGEEPA-VKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWAD 104 (471)
Q Consensus 27 ~~~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~-~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~ 104 (471)
+++++||+++.+++.++++|+++| |+|..++. +..+||...+++|++++++ .++.+++|+|+++++|++||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~-~~~~al~~aEL~s~~P~sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLM-VYFLMTSLGELAAYMPVSGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 346689999999999999999999 78877765 4558986689999999995 89999999999999999999999999
Q ss_pred HHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 038994 105 RAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVS 184 (471)
Q Consensus 105 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 184 (471)
+.+||.+||.+||.+++.+....+........+++.+++. .+.+....+++++++.+|++|+|..++++.+++..+
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~k 163 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD----TPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIK 163 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC----CchHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHH
Confidence 9999999999999999988776665554455555555553 234445666677788999999999999999988888
Q ss_pred HHHHHHHHHHhhc------ccc----CCCccccCCCCCCCchhHHH---HHHHHHhhhhhhhhhhhhhccCCCcchhHHH
Q 038994 185 LSPFIIMSLAAIP------KIK----PHRWFSSGQKGLKKDWNLFF---NTLFWNLNFWDNVSTLAGEVDRPQKTFPVAL 251 (471)
Q Consensus 185 ~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai 251 (471)
+..++.+++.++. ..+ .+++.+.+ .....++.+.+ ...+|+|.|+|.+++++||+|||+||+||++
T Consensus 164 i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi 242 (489)
T PRK10836 164 VTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGD-APFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAV 242 (489)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCC-CCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHH
Confidence 7766555433221 111 11222111 00112344333 2356999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCccc--------ccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 038994 252 LVAVIFTCVAYLIPLFAVIGAVNVDQSQ--------WDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQ 323 (471)
Q Consensus 252 ~~~~~~~~~~y~l~~~~~~~~~~~~~~~--------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~ 323 (471)
..++..+.++|++..+.....+|.++.. ...+|+...++..+.+....++.++.+++.+++.++.+++.+|+
T Consensus 243 ~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~ 322 (489)
T PRK10836 243 RQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRM 322 (489)
T ss_pred HHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888765421 12468888888877777788888889999999999999999999
Q ss_pred HHHHHhcCCCchhhhhccCCCCCcHHHHHHHHHHHHHhhcc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 038994 324 ILGMADLGFLPKFFGLRSKKFNTPWVGILVSTLITLGVSYM-------DFESIVASANFLYSLGMLLEFAAFIWLRMK-- 394 (471)
Q Consensus 324 l~~~a~d~~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 394 (471)
+|+|||||.+|++|+|+|| +++|++|++++.+++.+..+. .++.+.++.++...+.|++.+++.+++||+
T Consensus 323 l~a~Ardg~lP~~~~kv~~-~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~ 401 (489)
T PRK10836 323 LYTLACDGKAPRIFAKLSR-GGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYV 401 (489)
T ss_pred HHHHHcCCCcCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996 799999999999988765532 145677888889999999999999999886
Q ss_pred --CCCCC-CCcccCCchhHHHHHHHHhHHHHHH
Q 038994 395 --KPQLK-RPYRVPMKLPGLVIMCLIPSGFLVV 424 (471)
Q Consensus 395 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (471)
+|+.+ ||||.|..+.... .+++.+.+++.
T Consensus 402 ~~~~~~~~~p~~~p~~p~~~~-~~~~~~~~~~~ 433 (489)
T PRK10836 402 LQGHDLNDLPYRSGFFPLGPI-FAFVLCLIITL 433 (489)
T ss_pred hcCCCcCCCCCcCCCccHHHH-HHHHHHHHHHH
Confidence 45654 7999999854433 33444444433
No 15
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=4.1e-51 Score=409.36 Aligned_cols=359 Identities=18% Similarity=0.241 Sum_probs=299.4
Q ss_pred cccccccchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhC
Q 038994 30 IKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFG 108 (471)
Q Consensus 30 ~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g 108 (471)
+++|++++++++++++|+++| |++.+|+..+..|| ..+++|+++++. .++.+++++|+++++|++||.|.|++| +|
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~-~~i~~wli~~~~-~l~~al~~aEL~s~~P~~GG~y~y~~~-~g 78 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGS-IAIWGWIISIIG-AMSLAYVYARLATKNPQQGGPIAYAGE-IS 78 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCChhHHHHH-HC
Confidence 458899999999999999999 78999998887888 478999999985 889999999999999999999999999 89
Q ss_pred ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 038994 109 PFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPF 188 (471)
Q Consensus 109 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 188 (471)
|.+||.+||.+|................|+..++|...++.+..+++++++++.+++|.+|+|..++++.+..+++++.+
T Consensus 79 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~~ 158 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPV 158 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999986666666666777788888887655556666677778888999999999999999998887777666
Q ss_pred HHHHHHhhccccCCCccc-cCCCC--CCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 038994 189 IIMSLAAIPKIKPHRWFS-SGQKG--LKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIP 265 (471)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~ 265 (471)
+.+.+.+..+.+++++.+ ....+ ...++...+...+|+|.|+|.+++++||+|||+||+||++..+..+++++|++.
T Consensus 159 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~ 238 (435)
T PRK10435 159 VGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAA 238 (435)
T ss_pred HHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHH
Confidence 555544443333332211 11111 112233344567899999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccCCCC
Q 038994 266 LFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSKKFN 345 (471)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~ 345 (471)
.++.....|+++...+++|+...+++..+++...++.+..+++.+++.+++++..+|..++++|||.+|++|+|+|| ++
T Consensus 239 ~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~nk-~g 317 (435)
T PRK10435 239 TQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVDK-NG 317 (435)
T ss_pred HHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCc-CC
Confidence 99999999998887788999999988888888888888888999999999999999999999999999999999996 99
Q ss_pred CcHHHHHHHHHHHHHhh----cc---------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038994 346 TPWVGILVSTLITLGVS----YM---------DFESIVASANFLYSLGMLLEFAAFIWLR 392 (471)
Q Consensus 346 ~P~~a~~~~~~~~~~~~----~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 392 (471)
+|+++++++.++..++. +. .++.+.++.+...++.|++.+++.+++|
T Consensus 318 ~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~ 377 (435)
T PRK10435 318 IPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFE 377 (435)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999877664432 11 2678889999999999999999988653
No 16
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=1.2e-50 Score=408.76 Aligned_cols=416 Identities=18% Similarity=0.216 Sum_probs=323.5
Q ss_pred cccccccccchhHHHHHHHhhcc-cccCChhH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 038994 28 TTIKSKKLTLIPLIFLIYFEVAG-GPYGEEPA-VKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADR 105 (471)
Q Consensus 28 ~~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~-~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 105 (471)
+.++||+++.+++.+++++.++| |+|..++. +..+||. .+++|++++++ .++.+++++|+++++|++||.|.|+++
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~-~~~~a~~~aEl~s~~P~~Gg~~~~~~~ 84 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLL-VVFIMRMLGEMAVANPDTGSFSTYADD 84 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 45689999999999999999999 67777755 5568885 56799999985 888999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 038994 106 AFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSL 185 (471)
Q Consensus 106 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 185 (471)
.+||.+||.+||.+++++....+......+.+++.++|. .+.+..+++++++.+.+|++|+|..++++.+.+++++
T Consensus 85 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki 160 (452)
T TIGR01773 85 AIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD----IPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKV 160 (452)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 999999999999999999999999988899999887764 4566778888888999999999999999999888888
Q ss_pred HHHHHHHHHhhc---cccC----CCccccCC-CC-CCCch---hHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHH
Q 038994 186 SPFIIMSLAAIP---KIKP----HRWFSSGQ-KG-LKKDW---NLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLV 253 (471)
Q Consensus 186 ~~~~~~~~~~~~---~~~~----~~~~~~~~-~~-~~~~~---~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~ 253 (471)
+.++++++.++. ...+ .++.+... ++ .+.++ ...+...+|+|.|+|.+++++||+|||+||+||++..
T Consensus 161 ~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~ 240 (452)
T TIGR01773 161 IAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNS 240 (452)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHH
Confidence 776655544321 1111 11221111 11 01233 3345567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCccccc-ccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Q 038994 254 AVIFTCVAYLIPLFAVIGAVNVDQSQWD-SGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGF 332 (471)
Q Consensus 254 ~~~~~~~~y~l~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~ 332 (471)
+...++++|++.........|+++.... +.|.....+..+++....++.++.+++.+++.++.+++.+|.+++|+|||.
T Consensus 241 ~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~ 320 (452)
T TIGR01773 241 VIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGD 320 (452)
T ss_pred HHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999988887777776654332 348888888887787888888888999999999999999999999999999
Q ss_pred CchhhhhccCCCCCcHHHHHHHHHHHHHhhcc---C----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccc-
Q 038994 333 LPKFFGLRSKKFNTPWVGILVSTLITLGVSYM---D----FESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPYRV- 404 (471)
Q Consensus 333 lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~---~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 404 (471)
+|++|+|+|| +++|++|+++..+++.+..+. + ++.+.+..+...++.|++.+++.+++|+|+|+.+||++.
T Consensus 321 lP~~~~~v~~-~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~~~~~~~~~~~ 399 (452)
T TIGR01773 321 APRVFMKLNK-KGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKANGEAIKIR 399 (452)
T ss_pred cCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 9999999995 899999999998888765432 1 456777777788899999999999999888776666554
Q ss_pred -CCchhHHHHHHHHhHHHHHHHHH-HhhH-HHHHHHHHHHHHHHHHHHHH
Q 038994 405 -PMKLPGLVIMCLIPSGFLVVIMV-VATK-IVYLVSGLMTLGAIGWYFFM 451 (471)
Q Consensus 405 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~g~~~~~~~ 451 (471)
+..++ ..+.++..+.+...... .++. ........+++..+.+|...
T Consensus 400 ~~~~p~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~ 448 (452)
T TIGR01773 400 MWLYPW-LTWLVIIFICGILVSMLFIPSMRDEVLLTGLLTIIVLCSYLVF 448 (452)
T ss_pred CCCccH-HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHh
Confidence 43433 33334444444444332 3333 33444555555555556554
No 17
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=2.2e-50 Score=405.82 Aligned_cols=393 Identities=18% Similarity=0.224 Sum_probs=318.8
Q ss_pred cccccccccchhHHHHHHHhhcc-cccCChhH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 038994 28 TTIKSKKLTLIPLIFLIYFEVAG-GPYGEEPA-VKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADR 105 (471)
Q Consensus 28 ~~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~-~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 105 (471)
++++||+++.++..++++++++| |+|..++. +..+|| ..+++|++++++ .++.+++++|+++++|.+||.|+|+++
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~-~~~v~~s~aEl~s~~P~aGg~y~~~~~ 84 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFI-AFLIMRQLGEMVVEEPVAGSFSHFAYK 84 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 34689999999999999999999 67666665 455888 678999999995 888999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 038994 106 AFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSL 185 (471)
Q Consensus 106 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 185 (471)
.+||..||.+||.+++.+....+......+++++.++|. .+.+....++.++.+.+|++|+|..++++.+.+.+++
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki 160 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE----IPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKV 160 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988899999887764 3455667777788999999999999999999999988
Q ss_pred HHHHHHHHHhh---ccc--cCC-Ccccc-CCCC-CCCchh---HHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHH
Q 038994 186 SPFIIMSLAAI---PKI--KPH-RWFSS-GQKG-LKKDWN---LFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVA 254 (471)
Q Consensus 186 ~~~~~~~~~~~---~~~--~~~-~~~~~-~~~~-~~~~~~---~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~ 254 (471)
..++++++..+ ... +++ .+.+. ..++ .+.++. ..+....|+|.|+|.+++++||+|||+||+||++..+
T Consensus 161 ~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~ 240 (456)
T PRK10238 161 IAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQV 240 (456)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 77655444222 111 111 11111 0011 022333 3344578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCc
Q 038994 255 VIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLP 334 (471)
Q Consensus 255 ~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP 334 (471)
...+.++|+..........|+++...+++|+.++.++.+.+....++.+..+.+.+++.++.+++.+|++|+++|||.+|
T Consensus 241 ~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP 320 (456)
T PRK10238 241 IYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAP 320 (456)
T ss_pred HHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999998888777888888777778999988888888788888888899999999999999999999999999999
Q ss_pred hhhhhccCCCCCcHHHHHHHHHHHHHhhcc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCCcccC
Q 038994 335 KFFGLRSKKFNTPWVGILVSTLITLGVSYM-------DFESIVASANFLYSLGMLLEFAAFIWLRMKKPQL--KRPYRVP 405 (471)
Q Consensus 335 ~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 405 (471)
++|+|+|| +++|++|++++.+++.+..+. .++.+.++.+....+.|.+.+++.+++||++++. ++++|.|
T Consensus 321 ~~f~kv~~-~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~ 399 (456)
T PRK10238 321 KALASVDK-RGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPAL 399 (456)
T ss_pred HHHHhhCc-CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCC
Confidence 99999997 799999999999988765432 2678888888999999999999999999887654 3456766
Q ss_pred CchhHHHHHHHHhHHHHHHHHHH
Q 038994 406 MKLPGLVIMCLIPSGFLVVIMVV 428 (471)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~ 428 (471)
.+ +...+.+++.+.+..+..+.
T Consensus 400 ~~-p~~~~~~~~~~~~~~~~~~~ 421 (456)
T PRK10238 400 LY-PLGNWICLLFMAAVLVIMLM 421 (456)
T ss_pred Cc-cHHHHHHHHHHHHHHHHHHH
Confidence 65 44455555555555554444
No 18
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=2.1e-50 Score=407.81 Aligned_cols=389 Identities=18% Similarity=0.234 Sum_probs=313.4
Q ss_pred ccccccccccchhHHHHHHHhhcc-cccCChh-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 038994 27 TTTIKSKKLTLIPLIFLIYFEVAG-GPYGEEP-AVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWAD 104 (471)
Q Consensus 27 ~~~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~-~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~ 104 (471)
.+++++|+++.+++.++++|+++| |+|..++ ....+|| ..+++|++++++ .++.+++++|++++.|..|+.|.|++
T Consensus 14 ~~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~-~~~~~~s~aEl~s~~~~~~~~~~ya~ 91 (469)
T PRK11049 14 AEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFM-LFFVMRAMGELLLSNLEYKSFSDFAS 91 (469)
T ss_pred cchhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 345699999999999999999999 6666555 4566888 578999999985 88899999999999999999999999
Q ss_pred HHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 038994 105 RAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVS 184 (471)
Q Consensus 105 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 184 (471)
+.+||..||++||.+++.+....+..+...+.|++.++|.. +.+..+.++..+.+.+|++|+|..+++|.+.+.++
T Consensus 92 ~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~----~~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~k 167 (469)
T PRK11049 92 DLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL----SDWVASLAVVLLLLSLNLATVKMFGEMEFWFAMIK 167 (469)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999998777777778888888877642 34455666777889999999999999999999998
Q ss_pred HHHHHHHHHHhhccc-----cC----CCccccCC-CC-CCCchh---HHHHHHHHHhhhhhhhhhhhhhccCCCcchhHH
Q 038994 185 LSPFIIMSLAAIPKI-----KP----HRWFSSGQ-KG-LKKDWN---LFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVA 250 (471)
Q Consensus 185 ~~~~~~~~~~~~~~~-----~~----~~~~~~~~-~~-~~~~~~---~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a 250 (471)
+..++++++.++... ++ .++.+... .+ .+.++. ..+...+|+|.|+|.+++++||+|||+||+||+
T Consensus 168 l~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPra 247 (469)
T PRK11049 168 IVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRA 247 (469)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHH
Confidence 877776665544311 11 11211111 10 012333 344557899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Q 038994 251 LLVAVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADL 330 (471)
Q Consensus 251 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d 330 (471)
+..+.+...++|++.........|+++...+++|..+.++..+++....++.+..+++.+++.++.+.+.+|.+|+|+||
T Consensus 248 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ard 327 (469)
T PRK11049 248 INSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQE 327 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99888888999999999988888888887777899988888888888888888899999999999999999999999999
Q ss_pred CCCchhhhhccCCCCCcHHHHHHHHHHHHHh---h-c-c----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--
Q 038994 331 GFLPKFFGLRSKKFNTPWVGILVSTLITLGV---S-Y-M----DFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLK-- 399 (471)
Q Consensus 331 ~~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~---~-~-~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 399 (471)
|.+|++|+|+|| +|+|+++++++.++..+. . . . .++.+.++.++...+.|.+.+++.+++|+|+|+.+
T Consensus 328 g~lP~~~~kv~~-~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~ 406 (469)
T PRK11049 328 GVAPKAFAKLSK-RAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPHLHEK 406 (469)
T ss_pred CCCCHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Confidence 999999999997 699999999987765431 1 1 1 25667778888888999999999999999988875
Q ss_pred CCcccCCchhHHHHHHHHhHHHHH
Q 038994 400 RPYRVPMKLPGLVIMCLIPSGFLV 423 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~ 423 (471)
||||.|.+.+ ..+.+++.+....
T Consensus 407 ~pf~~p~~~~-~~~~~~~~~~~~~ 429 (469)
T PRK11049 407 SIYKMPLGKL-MCWVCMAFFAFVL 429 (469)
T ss_pred CCccCcCcch-HHHHHHHHHHHHH
Confidence 5899988753 3333344443333
No 19
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=3.4e-50 Score=405.55 Aligned_cols=417 Identities=19% Similarity=0.237 Sum_probs=323.9
Q ss_pred cccccccccchhHHHHHHHhhcc-cccCChhH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 038994 28 TTIKSKKLTLIPLIFLIYFEVAG-GPYGEEPA-VKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADR 105 (471)
Q Consensus 28 ~~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~-~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 105 (471)
++++||+++.+++.++++|.++| |++..++. +..+|| ..+++|++++++ .++.+++++|+++++|++||.|.|+++
T Consensus 4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~-~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVA-AYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45689999999999999999999 67766655 455888 468999999985 888999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 038994 106 AFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSL 185 (471)
Q Consensus 106 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 185 (471)
.+||.+||.+||.+++.+....+......+.|.+.++|. .+.+.+.++++++...+|++|+|..++++.+++.+++
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~ 157 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT----VPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKV 157 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CChHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 999999999999999999887777777888888877764 2344556666778899999999999999999988888
Q ss_pred HHHHHHHHHhh----cc---c-cCCCccc-cCC-CCCCCchhH---HHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHH
Q 038994 186 SPFIIMSLAAI----PK---I-KPHRWFS-SGQ-KGLKKDWNL---FFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALL 252 (471)
Q Consensus 186 ~~~~~~~~~~~----~~---~-~~~~~~~-~~~-~~~~~~~~~---~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~ 252 (471)
..++++++.++ .. . ++.+..+ ... +..+.++.+ .+...+|+|.|+|.+++++||+|||+||+||++.
T Consensus 158 ~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~ 237 (457)
T PRK10580 158 ATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAIN 237 (457)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHH
Confidence 77665544321 11 1 1111111 110 111223333 3445789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Q 038994 253 VAVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGF 332 (471)
Q Consensus 253 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~ 332 (471)
.+.+.+.++|++..+......|+++....+.|+...++..+.+....++.+..+++.+++.++.+++.+|++++|+|||.
T Consensus 238 ~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~ 317 (457)
T PRK10580 238 SVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGS 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99888999999999888888888887766778888777777777777778888889999999999999999999999999
Q ss_pred CchhhhhccCCCCCcHHHHHHHHHHHHHhhc----c---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC---CCCc
Q 038994 333 LPKFFGLRSKKFNTPWVGILVSTLITLGVSY----M---DFESIVASANFLYSLGMLLEFAAFIWLRMKKPQL---KRPY 402 (471)
Q Consensus 333 lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~----~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 402 (471)
+|++|+|+|| +++|++|++++.++..+... . .++.+.++.++...+.|.+.+++.+++|||+++. ++||
T Consensus 318 lP~~~~kv~~-~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f 396 (457)
T PRK10580 318 APKIFSKTSR-RGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKF 396 (457)
T ss_pred cCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 9999999997 89999999998765544221 1 2567888888899999999999999999875332 3589
Q ss_pred ccCCchhHHHHHHHHhHHHHHHHH-HHh-hHHHHHHHHHHHHHHHHHHHHHH
Q 038994 403 RVPMKLPGLVIMCLIPSGFLVVIM-VVA-TKIVYLVSGLMTLGAIGWYFFMK 452 (471)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~~~~~~~~ 452 (471)
|.|.+.+ ..+.+++.+.+.+... +.+ .+....+...+.+++.+.|..+|
T Consensus 397 ~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~ 447 (457)
T PRK10580 397 KVPGGVA-TTIGGLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKR 447 (457)
T ss_pred ccCCccH-HHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9986643 3444444444444333 222 33345666777777877786643
No 20
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=5.4e-50 Score=404.97 Aligned_cols=412 Identities=19% Similarity=0.220 Sum_probs=331.5
Q ss_pred ccccchhHHHHHHHhhcc-cccCChhHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHhCC
Q 038994 33 KKLTLIPLIFLIYFEVAG-GPYGEEPAVKA-AGPLYALLGFMIFPFIWSIPEALITAELSTAFPGD-GGFVIWADRAFGP 109 (471)
Q Consensus 33 r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~-~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~-Gg~y~~~~~~~g~ 109 (471)
|+++++++.++++++++| |+|..|..... +||...+++|+++++. .++.+++++|+++++|++ ||.|.|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~-~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVG-MLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 689999999999999999 78888777554 7887788999999985 888999999999999997 5999999999999
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC--CChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 038994 110 FFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLE--SGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSP 187 (471)
Q Consensus 110 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 187 (471)
..||..||.+|+.+.............++..++|... ++.+....+.++++.+..+|++|.|..+++|.+.++++++.
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~ 159 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVP 159 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877766666666777777776542 22445566667777889999999999999999999999888
Q ss_pred HHHHHHHhhccccCCCccccCCC----C--CCCch---hHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHH
Q 038994 188 FIIMSLAAIPKIKPHRWFSSGQK----G--LKKDW---NLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFT 258 (471)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~---~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~ 258 (471)
++++.+.++...+++.+.+..++ + ....+ ...+...+|+|.|+|.+++++||+|| +||+||++..++..+
T Consensus 160 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v 238 (468)
T TIGR03810 160 LFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGV 238 (468)
T ss_pred HHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHH
Confidence 77776655433232222111000 0 01112 23445578999999999999999998 799999999999999
Q ss_pred HHHHHHHHHHHHhcccCCcccccccH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhh
Q 038994 259 CVAYLIPLFAVIGAVNVDQSQWDSGF-HATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFF 337 (471)
Q Consensus 259 ~~~y~l~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~ 337 (471)
.++|++..+...+..|.++....++| .....++..+++...++.++.+++.+++.++++.+.+|++|+|+|||.+|++|
T Consensus 239 ~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f 318 (468)
T TIGR03810 239 LAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYF 318 (468)
T ss_pred HHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH
Confidence 99999999999988888776655555 67788888888888999999999999999999999999999999999999999
Q ss_pred hhccCCCCCcHHHHHHHHHHHHHhhc------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCCcccCCchhH
Q 038994 338 GLRSKKFNTPWVGILVSTLITLGVSY------MDFESIVASANFLYSLGMLLEFAAFIWLRMKKPQ-LKRPYRVPMKLPG 410 (471)
Q Consensus 338 ~~~~~r~~~P~~a~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 410 (471)
+|+|| +|+|+++++++.+++.++.. ..++.+.++.+....+.|.+.+++.+++|+|+++ .+|+++
T Consensus 319 ~k~~~-~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~~~------- 390 (468)
T TIGR03810 319 GKENA-NGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRKQ------- 390 (468)
T ss_pred HhhCC-CCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh-------
Confidence 99996 89999999999888755442 2377888899999999999999999999877632 223332
Q ss_pred HHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038994 411 LVIMCLIPSGFLVVIMVVATKIVYLVSGLMTLGAIGWYFFMKFLK 455 (471)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 455 (471)
.+.+.+..+++++..+...+....++.+..+.|+.+|+..|+++
T Consensus 391 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 434 (468)
T TIGR03810 391 -LLIGLVALLYAVWLIYAAGLKYLLLSAILYAPGIYFYARARKEK 434 (468)
T ss_pred -HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23445556677777778888888999999999999997655433
No 21
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=8.3e-50 Score=405.79 Aligned_cols=419 Identities=19% Similarity=0.189 Sum_probs=316.7
Q ss_pred cccccchhHHHHHHHhhcc-cccCChh-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CChHHHHHHHHhC
Q 038994 32 SKKLTLIPLIFLIYFEVAG-GPYGEEP-AVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPG-DGGFVIWADRAFG 108 (471)
Q Consensus 32 ~r~l~~~~~~~~~~~~~iG-~~~~~~~-~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~g 108 (471)
||+++.+++.++++|.++| |++..++ .+..+||...+++|++++++ .++.+++++|+++++|+ .||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~-~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSI-IYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 5899999999999999999 6665544 45668887778999999985 88899999999999995 5567789999999
Q ss_pred ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 038994 109 PFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPF 188 (471)
Q Consensus 109 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 188 (471)
|.+||.+||.+++++....+......+.+++.+.+. .+...+..++.++.+++|++|+|..++++.+.+.+++..+
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l 155 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK----VNPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAI 155 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888776553 2223333455667889999999999999998887777665
Q ss_pred HHHHHHhhc---ccc--CC-----Ccccc-CCCCC--CCchhH---HHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHH
Q 038994 189 IIMSLAAIP---KIK--PH-----RWFSS-GQKGL--KKDWNL---FFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALL 252 (471)
Q Consensus 189 ~~~~~~~~~---~~~--~~-----~~~~~-~~~~~--~~~~~~---~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~ 252 (471)
+.+++.++. ... .+ ++.+. .+... ...+.+ .+...+|+|.|+|.+++++||+|||+||+||+++
T Consensus 156 ~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~ 235 (478)
T TIGR00913 156 IGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAK 235 (478)
T ss_pred HHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHH
Confidence 554443321 111 11 11110 11100 011333 3445689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCc--ccc-------cccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 038994 253 VAVIFTCVAYLIPLFAVIGAVNVDQ--SQW-------DSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQ 323 (471)
Q Consensus 253 ~~~~~~~~~y~l~~~~~~~~~~~~~--~~~-------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~ 323 (471)
.++.+++++|++..++.....|.++ ..+ .++|+....+..+.+....++.++.+++.+++.++.+++.+|+
T Consensus 236 ~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 315 (478)
T TIGR00913 236 RTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRT 315 (478)
T ss_pred HHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999888777777654 211 1367777777777777888888899999999999999999999
Q ss_pred HHHHHhcCCCchhhhhccCCCCCcHHHHHHHHHHHHHhhc-c------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 038994 324 ILGMADLGFLPKFFGLRSKKFNTPWVGILVSTLITLGVSY-M------DFESIVASANFLYSLGMLLEFAAFIWLRMK-- 394 (471)
Q Consensus 324 l~~~a~d~~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~-~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 394 (471)
+|+++|||.+|++|+|+|| +++|++|++++.+++.+..+ . .++.+.++.+....+.|++.+++.+++|++
T Consensus 316 l~a~ardg~lP~~f~k~~~-~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~ 394 (478)
T TIGR00913 316 LYALAHQGLAPKIFAYVDR-RGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMK 394 (478)
T ss_pred HHHHHhCCcccHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996 89999999999888765432 1 267788888899999999999999999875
Q ss_pred ---CCCCCCCcccCCchhHHHHHHHHhHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038994 395 ---KPQLKRPYRVPMKLPGLVIMCLIPSGFLVVIMVVA-------TKIVYLVSGLMTLGAIGWYFFMKFLKSK 457 (471)
Q Consensus 395 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (471)
+++.+||||.|.+++...+ +++.+++..+...++ +..........+..++.+|..++.++|+
T Consensus 395 ~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (478)
T TIGR00913 395 AQGRSLDELPYKSQTGPYGSYY-ALFFNILILIAQGYVAFAPVKFSAKSFFEAYLSLPIFIALYIGHKVYKRD 466 (478)
T ss_pred hcCCCcccCCccCCCcchHHHH-HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344789999987544333 333333333332221 2334455556666666677666554443
No 22
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=5.8e-49 Score=394.46 Aligned_cols=408 Identities=18% Similarity=0.195 Sum_probs=320.9
Q ss_pred HHHHhhcc-cccCChh-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHHHHHHHHH
Q 038994 43 LIYFEVAG-GPYGEEP-AVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGSLMGSWKF 120 (471)
Q Consensus 43 ~~~~~~iG-~~~~~~~-~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~ 120 (471)
+++|+++| |+|..++ .+..+|| ..+++|++++++ .++.+++++|+++++|++||.|.|++|.+||.+||.+||.++
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~-~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~ 79 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLL-VVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYW 79 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHH
Confidence 56788889 6666666 4556888 578999999995 888899999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccc-
Q 038994 121 LSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKI- 199 (471)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 199 (471)
+.+....+.+....+.+++.+.|. .+.+.++++++++++.+|++|+|..+++|.+.++++++.++++++.++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~ 155 (446)
T PRK10197 80 WFWVLVIPLEANIAAMILHSWVPG----IPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAIS 155 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc----CcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999988888887777777766553 456778888889999999999999999999999999887776655544211
Q ss_pred --cC----CCcccc-CCCC-CCCchhH---HHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 038994 200 --KP----HRWFSS-GQKG-LKKDWNL---FFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFA 268 (471)
Q Consensus 200 --~~----~~~~~~-~~~~-~~~~~~~---~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~ 268 (471)
.+ .++.+. ...+ .+.++.+ .+...+|+|.|+|.+++.+||+|||+||+||++..+...+.++|++..+.
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 156 GFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred CCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111110 0000 1223333 34457899999999999999999999999999999999999999999999
Q ss_pred HHhcccCCccccc-ccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccCCCCCc
Q 038994 269 VIGAVNVDQSQWD-SGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSKKFNTP 347 (471)
Q Consensus 269 ~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P 347 (471)
.....|+++.+.+ ..+.....+..+++....++.+..+++.+++.++.+++.+|++|+++|||.+|++|+|+|| +|+|
T Consensus 236 ~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~-~~~P 314 (446)
T PRK10197 236 VVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINR-SKTP 314 (446)
T ss_pred HheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCc-CCCc
Confidence 8888888754332 3466677788888888888888899999999999999999999999999999999999995 8999
Q ss_pred HHHHHHHHHHHHHhhcc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCCCCcccCCchhHHHHHHHHh
Q 038994 348 WVGILVSTLITLGVSYM-------DFESIVASANFLYSLGMLLEFAAFIWLRMK--KPQLKRPYRVPMKLPGLVIMCLIP 418 (471)
Q Consensus 348 ~~a~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 418 (471)
+++++++.+++.+..+. .++.+.++.+...++.|.+.+++.+++||+ +++.++|+|.|.+++...+. +..
T Consensus 315 ~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~~~-i~~ 393 (446)
T PRK10197 315 YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLV-IGF 393 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHHHH-HHH
Confidence 99999998777654322 367888889999999999999999999986 34446789998775444433 444
Q ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH-HHHHHhhcc
Q 038994 419 SGFLVVIMVV-ATKIVYLVSGLMTLGAIGWYF-FMKFLKSKN 458 (471)
Q Consensus 419 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 458 (471)
+.+....... ++......+.+++++++..|+ ..+|++|.+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (446)
T PRK10197 394 ITFVLVVMLFRPAQQLEVISTGLLAIGIICTVPIMARWKKLV 435 (446)
T ss_pred HHHHHHHHHHCcchHHHHHHHHHHHHHHHhhhHHHhhhcccc
Confidence 4444333333 344455567788888888887 666655544
No 23
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-49 Score=381.03 Aligned_cols=386 Identities=18% Similarity=0.201 Sum_probs=329.4
Q ss_pred cccccccchhHHHHHHHhhcc-cc-cCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHh
Q 038994 30 IKSKKLTLIPLIFLIYFEVAG-GP-YGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAF 107 (471)
Q Consensus 30 ~~~r~l~~~~~~~~~~~~~iG-~~-~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 107 (471)
++||++...++.++++|+.+| |. .+.+.++..+||...++++.+.+.+ ..++..+..||+..+|.+|+...|++|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~-vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIM-VYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 589999999999999999999 54 5778889999999999999999995 88889999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 038994 108 GPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSP 187 (471)
Q Consensus 108 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 187 (471)
+|.+||..||.||+.|....+.+..+.+..++.++|.. .+.+.+..++.+++..+|.+|+|..|..+..+..++++.
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~---v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ 196 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT---VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLT 196 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC---CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHH
Confidence 99999999999999999999999999999999998752 477788888999999999999999999999999888888
Q ss_pred HHHHHHHhhc---cccCC-------Cccc-cCCCCCCCchhHH---HHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHH
Q 038994 188 FIIMSLAAIP---KIKPH-------RWFS-SGQKGLKKDWNLF---FNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLV 253 (471)
Q Consensus 188 ~~~~~~~~~~---~~~~~-------~~~~-~~~~~~~~~~~~~---~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~ 253 (471)
++.+++.++. .+.++ .|.. ..+ ..++.++ +....|+|+|.|.+.-.++|.|||+|++|||+..
T Consensus 197 ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F---~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~ 273 (541)
T COG0833 197 IIGFIILGIIIICGGGPTHGYIGFNYWHDPGAF---AGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQ 273 (541)
T ss_pred HHHHHHHHHHHhcCCCCCCCCcceeeecCCCCC---CcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHH
Confidence 7777666542 11111 1221 112 2234444 3446689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCcc--------cccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 038994 254 AVIFTCVAYLIPLFAVIGAVNVDQS--------QWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQIL 325 (471)
Q Consensus 254 ~~~~~~~~y~l~~~~~~~~~~~~~~--------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~ 325 (471)
....+.++|++..+++...+|+++- ....+|+....+..+.+.++.+++++.+++.+++.|+.+++++|++|
T Consensus 274 vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~ 353 (541)
T COG0833 274 VFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLY 353 (541)
T ss_pred HHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 9999999999999999999998651 23457999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhhhhccCCCCCcHHHHHHHHHHHHHhhcc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 038994 326 GMADLGFLPKFFGLRSKKFNTPWVGILVSTLITLGVSYM-------DFESIVASANFLYSLGMLLEFAAFIWLRMKKPQL 398 (471)
Q Consensus 326 ~~a~d~~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (471)
+||+||..||+|+|+|| +|+|++|++++.+++++..+. .++.+.++.++...+.++..+++.+++||....+
T Consensus 354 sLA~~g~APk~f~~~~r-~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~Q 432 (541)
T COG0833 354 SLAKQGKAPKIFAKVDR-RGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQ 432 (541)
T ss_pred HHHhcCCCchHHHhhCC-CCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999 899999999999888775431 3889999999999999999999999999753222
Q ss_pred -----CCCcccCCchhHHHHHHHHhHHHHH
Q 038994 399 -----KRPYRVPMKLPGLVIMCLIPSGFLV 423 (471)
Q Consensus 399 -----~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (471)
+-|||.|..+++.....+...+.++
T Consensus 433 G~s~~~L~yks~~~p~g~~~~~~~~~li~i 462 (541)
T COG0833 433 GRSLDELPYKSPFGPYGPIYGLILCILILI 462 (541)
T ss_pred CCChhhcCccCCCccHHHHHHHHHHHHHHH
Confidence 3489999987766665444343333
No 24
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=8.1e-49 Score=370.22 Aligned_cols=420 Identities=20% Similarity=0.215 Sum_probs=347.9
Q ss_pred cccccccccchhHHHHHHHhhcc-c-ccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 038994 28 TTIKSKKLTLIPLIFLIYFEVAG-G-PYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADR 105 (471)
Q Consensus 28 ~~~~~r~l~~~~~~~~~~~~~iG-~-~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 105 (471)
++.++|.++..++-.+++|+.+| | .++....+..+|| .+++++++.+++ .....-+.+|+...-|++|+..+|+++
T Consensus 8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGP-SvlLaY~I~G~~-~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGP-SVLLAYLIAGIF-VFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 45689999999999999999999 4 4677888899999 678899999985 666788899999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 038994 106 AFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSL 185 (471)
Q Consensus 106 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 185 (471)
.+||+.||.+||.||+.|+....+...+.+.|++.++|. .|.|+.+++.+.+...+|+.++|..++.+..+..+++
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~----vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV 161 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD----VPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKV 161 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996 5899999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhc---cc---c--CCCccccCCCC--CCCchhHH---HHHHHHHhhhhhhhhhhhhhccCCCcchhHHHH
Q 038994 186 SPFIIMSLAAIP---KI---K--PHRWFSSGQKG--LKKDWNLF---FNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALL 252 (471)
Q Consensus 186 ~~~~~~~~~~~~---~~---~--~~~~~~~~~~~--~~~~~~~~---~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~ 252 (471)
+.++.+++.++. .+ + +..+++....+ .+.++.++ +...+|+|.|.|.+...+.|+|||+|++|||+-
T Consensus 162 ~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin 241 (462)
T COG1113 162 AAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAIN 241 (462)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHh
Confidence 887777665542 11 1 11122111110 23355554 455789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Q 038994 253 VAVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGF 332 (471)
Q Consensus 253 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~ 332 (471)
.-...+.++|+...+++....|+++.+.+++|+.+.++..+-+....++++.++.+.+++.|+.+++++|++|++|+||.
T Consensus 242 ~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~ 321 (462)
T COG1113 242 SVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGD 321 (462)
T ss_pred hhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhccCCCCCcHHHHHHHHHHHHHhhcc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCCcc
Q 038994 333 LPKFFGLRSKKFNTPWVGILVSTLITLGVSYM-------DFESIVASANFLYSLGMLLEFAAFIWLRMKKPQL--KRPYR 403 (471)
Q Consensus 333 lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 403 (471)
.|+.++|+|| +++|+++++++.+...+...+ .|+.+.+..++.....|.+..++.+++||++++. +.+||
T Consensus 322 APk~~~klsk-~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~fk 400 (462)
T COG1113 322 APKAFAKLSK-RGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKFK 400 (462)
T ss_pred ccHhHhhccc-cCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCcccc
Confidence 9999999999 999999999987776554432 2788888999999999999999999999965544 34699
Q ss_pred cCCchhHHHHHHHHhHHHHHHHHHHh-hH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 038994 404 VPMKLPGLVIMCLIPSGFLVVIMVVA-TK-IVYLVSGLMTLGAIGWYFFMKFLK 455 (471)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~g~~~~~~~~~~~ 455 (471)
+|..+..... .++.++..+..+... +. .....+.++.++-.+.|...++++
T Consensus 401 m~~~p~~~~l-~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~~ 453 (462)
T COG1113 401 MPLYPFTNYL-TLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKK 453 (462)
T ss_pred cccccHHHHH-HHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9988544444 455455555544443 22 344455555555555555554433
No 25
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1e-47 Score=382.68 Aligned_cols=352 Identities=20% Similarity=0.246 Sum_probs=281.2
Q ss_pred ccchhHHHHHHHhhcc-cccCChhHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhH
Q 038994 35 LTLIPLIFLIYFEVAG-GPYGEEPAVKA-AGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFG 112 (471)
Q Consensus 35 l~~~~~~~~~~~~~iG-~~~~~~~~~~~-~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 112 (471)
+++|+.+++.+|+++| |+|..++.... +|| ..+++|++++++ .++.+++++|+++++|++||.|.|+++.+||.+|
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~-~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~g 78 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILL-IFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLG 78 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhH
Confidence 5789999999999999 78888877555 777 678899999985 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHH
Q 038994 113 SLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMS 192 (471)
Q Consensus 113 ~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 192 (471)
|.+||.++..+....+........|....++. +.++...+.+++.++.+.+|++|+|..+|++.+..++.+..+..+
T Consensus 79 f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~- 155 (410)
T PRK11021 79 RVTGWLFLSVIPVGLPAALQIAAGFGQALFGW--SSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAI- 155 (410)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC--CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999877666555555566777776663 234556677777888999999999999999998775543332221
Q ss_pred HHhhccccCCCccccCCCCCCCchhHH---HHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 038994 193 LAAIPKIKPHRWFSSGQKGLKKDWNLF---FNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFAV 269 (471)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~ 269 (471)
....+.+++++...... ..++.++ +...+|+|.|+|.+++++||+|||+||+||++..+++.++++|++...+.
T Consensus 156 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~ 232 (410)
T PRK11021 156 -WWAGDIKPADIPFPAPG--SIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVV 232 (410)
T ss_pred -HHHcCCchhcCCCCCCC--CccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222322111111 2244443 45578999999999999999999999999999999999999999998887
Q ss_pred HhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccCCCCCcHH
Q 038994 270 IGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSKKFNTPWV 349 (471)
Q Consensus 270 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ 349 (471)
....+.++...++.|..+..++..++....++.+..+++.+++.++.+.+.+|++++|+|||.+|++|+|+|| +++|++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~~-~~tP~~ 311 (410)
T PRK11021 233 LHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSA-RGVPVN 311 (410)
T ss_pred HhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhcc-CCCcHH
Confidence 7666655544455677777777767666677777888899999999999999999999999999999999996 899999
Q ss_pred HHHHHHHHHHHhhc------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 038994 350 GILVSTLITLGVSY------MDFESIVASANFLYSLGMLLEFAAFIWLRMKK 395 (471)
Q Consensus 350 a~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (471)
+++++.+++.+..+ .+++.+.++.+....+.|.+.+++.+++++|+
T Consensus 312 ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 312 ALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99998877765432 36888889999999999999999999987653
No 26
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=5.9e-48 Score=392.38 Aligned_cols=425 Identities=14% Similarity=0.161 Sum_probs=308.3
Q ss_pred CCccccccccccchhHHHHHHHhhcc--cccCC-hhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHH
Q 038994 25 VATTTIKSKKLTLIPLIFLIYFEVAG--GPYGE-EPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVI 101 (471)
Q Consensus 25 ~~~~~~~~r~l~~~~~~~~~~~~~iG--~~~~~-~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~ 101 (471)
..+++++||+++.++.++++++.+.. +++.. ...+..+||...+++|++++++ .++.+++++|+++++|++||.|+
T Consensus 4 ~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~-~l~~~~~~aEl~s~~P~~Gg~y~ 82 (482)
T TIGR00907 4 LGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAG-SICIALSLAELSSAYPTSGGQYF 82 (482)
T ss_pred cCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHH-HHHHHHHHHHHHhhCCCCccHHH
Confidence 45577899999999999999996621 33333 3345668997789999999995 88899999999999999999999
Q ss_pred HHHHHhC----ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc----c---cCCChhHHHHHHHHHHHHHHHhhccc
Q 038994 102 WADRAFG----PFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIH----P---LESGWPRSLAIMVSTCILSFLNFTGL 170 (471)
Q Consensus 102 ~~~~~~g----~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~g~ 170 (471)
|++|.+| +..||++||.+++++....+......+.++..... . .+++|...++.+++.++.+++|++|.
T Consensus 83 ~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~ 162 (482)
T TIGR00907 83 WSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPT 162 (482)
T ss_pred HHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhH
Confidence 9999987 56799999999999999888888888888765432 1 12345556677778888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccccC----CC--ccccCCC--C-CCCch--hHHHHHHHHHhhhhhhhhhhhhh
Q 038994 171 TIVGYAAVLLGLVSLSPFIIMSLAAIPKIKP----HR--WFSSGQK--G-LKKDW--NLFFNTLFWNLNFWDNVSTLAGE 239 (471)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~--~-~~~~~--~~~~~~~~~af~G~e~~~~~~~E 239 (471)
|..++++.+..+++++.++++.+..+...++ .+ +.+.... + ...++ ...+....|+|.|+|.+++++||
T Consensus 163 k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E 242 (482)
T TIGR00907 163 KWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEE 242 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHh
Confidence 9999999998888877666444443322211 11 1111111 0 01122 12233466999999999999999
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccc-CCccccc--ccHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHH
Q 038994 240 VDRPQKTFPVALLVAVIFTCVAYLIPLFAVIGAVN-VDQSQWD--SGFHATAAEMIAGK-WLKIWLEVGAVLSAIGLFEA 315 (471)
Q Consensus 240 ~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~-~~~~~~~--~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~ 315 (471)
+|||+||+||++..++.+..+++++.........+ .++..++ ++|+.+.+.+..+. ....++.+..+++.+++.++
T Consensus 243 ~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 322 (482)
T TIGR00907 243 IENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFFCAIT 322 (482)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998776655444443333322 2322222 25888887765443 66667777888888999999
Q ss_pred HHhhhHHHHHHHHhcCCCc--hhhhhccCCCCCcHHHHHHHHHHHHHhhcc------CHHHHHHHHHHHHHHHHHHHHHH
Q 038994 316 QLSSSAYQILGMADLGFLP--KFFGLRSKKFNTPWVGILVSTLITLGVSYM------DFESIVASANFLYSLGMLLEFAA 387 (471)
Q Consensus 316 ~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~ 387 (471)
.+++.+|++++++|||.+| ++|+|+|||+|+|+++++++.+++.++.+. .++.+.++.+....+.|.+..++
T Consensus 323 ~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~ 402 (482)
T TIGR00907 323 CMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIIC 402 (482)
T ss_pred HHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999998899999999999888765532 47788888999999999998877
Q ss_pred HHHHHhhCCCCCCCcccCCchhHHHHHHHHhHHHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHHHH
Q 038994 388 FIWLRMKKPQLKRPYRVPMKLPGLVIMCLIPSGFLVVIMVVATK---------IVYLVSGLMTLGAIGWYFFM 451 (471)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~ 451 (471)
.++.|| +++.+||||++...+.....+++.+.+..+..+.+.. -..++..+.++++.++|..+
T Consensus 403 ~l~~~~-~~~~~~~f~lg~~~~~~~~~~~~~~~~~~v~~~~P~~~p~~~~~~ny~~~~~~~~~~~~~~~~~~~ 474 (482)
T TIGR00907 403 KLAKGR-NTIAPGPFWLGKYGFFVNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVVVFAGVLAISLVYWKYK 474 (482)
T ss_pred HHHhcC-CCCCCCCCcCCcchHHHHHHHHHHHHHHHhheeCCCCCCCCcccCChHhHHHHHHHHHHHHHheEe
Confidence 665433 3456789998554445555555555555554433211 12223355566666666543
No 27
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=9.1e-47 Score=382.19 Aligned_cols=400 Identities=14% Similarity=0.109 Sum_probs=300.2
Q ss_pred CCccccccccccchhHHHHHHHhh-cc-cccCChhH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHH
Q 038994 25 VATTTIKSKKLTLIPLIFLIYFEV-AG-GPYGEEPA-VKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVI 101 (471)
Q Consensus 25 ~~~~~~~~r~l~~~~~~~~~~~~~-iG-~~~~~~~~-~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~ 101 (471)
.++++++||+++.++.++++++.+ ++ +++...+. +..+|| ..+++|+++++. .++.+++++|+++++|++||.|+
T Consensus 5 ~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~-~l~~als~aEL~s~~P~aGG~Y~ 82 (475)
T TIGR03428 5 FGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVG-QLLVALNFAELAARYPISGAIYQ 82 (475)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCHHH
Confidence 456788999999999999999975 45 56655544 556888 689999999984 88999999999999999999999
Q ss_pred HHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc---------ccC---CChhHHHHHHHHHHHHHHHhhcc
Q 038994 102 WADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIH---------PLE---SGWPRSLAIMVSTCILSFLNFTG 169 (471)
Q Consensus 102 ~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~g 169 (471)
|+++.+||.+||++||.+++++....+........++....+ ... ..++..++++++.++.+.+|++|
T Consensus 83 ~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g 162 (475)
T TIGR03428 83 WSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIG 162 (475)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999887666665555555433221 110 11445677777888899999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccccCC--C-ccccCCCCCCCchh-H---HHHHHHHHhhhhhhhhhhhhhccC
Q 038994 170 LTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKPH--R-WFSSGQKGLKKDWN-L---FFNTLFWNLNFWDNVSTLAGEVDR 242 (471)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~-~---~~~~~~~af~G~e~~~~~~~E~k~ 242 (471)
+|..++++.+..++++..++++++..+...+.+ . +... ..+...++. . .....+|+|.|+|.+++++||+||
T Consensus 163 ~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~kn 241 (475)
T TIGR03428 163 VEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTS-VTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKN 241 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecC-CCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcC
Confidence 999999999988888877666655444332211 1 1111 111112222 2 223467999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhcccCC---cccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038994 243 PQKTFPVALLVAVIFTCVAYLIPLFAVIGAVNVD---QSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSS 319 (471)
Q Consensus 243 p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 319 (471)
|+||+||++..++.+..+.|.+..+......|.. +...++.|. ...+..+......+....+++.+++.++.+.+
T Consensus 242 P~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~ 319 (475)
T TIGR03428 242 PRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPY--VLSAVLDSPWGTVLLVDVAIAILVCTLAIQTA 319 (475)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHH--HHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887777776666554431 122223343 33444333233445556677888999999999
Q ss_pred hHHHHHHHHhcCCCc--hhhhhccCCCCCcHHHHHHHHHHHHHhhcc------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038994 320 SAYQILGMADLGFLP--KFFGLRSKKFNTPWVGILVSTLITLGVSYM------DFESIVASANFLYSLGMLLEFAAFIWL 391 (471)
Q Consensus 320 ~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~ 391 (471)
.+|++|+++|||.+| ++|+|+|||+++|++++++..+++.++.+. .++.+.++.+....+.|.+..+..+..
T Consensus 320 ~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~ 399 (475)
T TIGR03428 320 GSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLR 399 (475)
T ss_pred HHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 489999999999999999999988766543 267788888889999999887776666
Q ss_pred HhhC--C----CCCCCcccCCchhHHHHHHHHhHHHHHHHHHHh
Q 038994 392 RMKK--P----QLKRPYRVPMKLPGLVIMCLIPSGFLVVIMVVA 429 (471)
Q Consensus 392 ~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (471)
|+|. | ..++||++++..+.+.+.++++..+..+..+++
T Consensus 400 ~~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~v~~~~P 443 (475)
T TIGR03428 400 RLRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMVVNLSWP 443 (475)
T ss_pred HHhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHCC
Confidence 5442 1 246789998777888888888888888777765
No 28
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=5.4e-46 Score=376.70 Aligned_cols=388 Identities=22% Similarity=0.330 Sum_probs=281.8
Q ss_pred ccccchhHHHHHHHhhcccccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhH
Q 038994 33 KKLTLIPLIFLIYFEVAGGPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFG 112 (471)
Q Consensus 33 r~l~~~~~~~~~~~~~iG~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 112 (471)
||++.+++..+.+..+.+ +..++. .+..|+ ..++.|+++++++.++.+++++|+++++|++||.|.|++|.+||.+|
T Consensus 1 ~~~~~~~l~~~~~~~v~~-~~~~~~-~a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~g 77 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS-LRGLPA-EAEYGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWG 77 (474)
T ss_pred CcccHHHHHHHHHHHHHH-hhcchH-HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHH
Confidence 468999999999888755 333343 345677 56777888888767899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc------cc-CCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH-H
Q 038994 113 SLMGSWKFLSGVINIAAFPVLCIDYLKKVIH------PL-ESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLV-S 184 (471)
Q Consensus 113 ~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~ 184 (471)
|..+|.+|+.+....+......+..+..+.+ .. .+.+......++++++.+.+|++|+|..++++.+...+ +
T Consensus 78 f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~~ 157 (474)
T TIGR03813 78 FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVGT 157 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 9999999999876555443333333332211 11 12344445666677788999999999999999865433 3
Q ss_pred HHHHHHHHHHhh---ccccCC----CccccCCCCCCCchhH--HHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHH
Q 038994 185 LSPFIIMSLAAI---PKIKPH----RWFSSGQKGLKKDWNL--FFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAV 255 (471)
Q Consensus 185 ~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~ 255 (471)
+++++++.+.+. ...++. ++.+..+. ..++.. .....+|+|.|+|.++.++||+|||+||+||++..++
T Consensus 158 ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~ 235 (474)
T TIGR03813 158 IIPAAILVILGISYLLTGGESQIPLRWDDAFPD--FTNFDNVVLAASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAA 235 (474)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCC--ccccccHHHHHHHHHHHhchhHhHHHHHhccCcccchhHHHHHHH
Confidence 333333322222 111111 11111111 112222 2224578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCcccccccH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Q 038994 256 IFTCVAYLIPLFAVIGAVNVDQSQWDSGF---HATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGF 332 (471)
Q Consensus 256 ~~~~~~y~l~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~ 332 (471)
.+++++|++..++.....|+++...++.+ +.+..+..+.+....++.+...++.+++.++.+.+.+|.+++++|||.
T Consensus 236 ~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~ 315 (474)
T TIGR03813 236 LGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGY 315 (474)
T ss_pred HHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999888888776543332 334444445566666777777888899999999999999999999999
Q ss_pred CchhhhhccCCCCCcHHHHHHHHHHHHHhhc-----cC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcc
Q 038994 333 LPKFFGLRSKKFNTPWVGILVSTLITLGVSY-----MD----FESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPYR 403 (471)
Q Consensus 333 lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~-----~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (471)
+|++|+|+|| +++|+++++++.+++.++.+ .+ ++.+.++.+....+.|++.+++.+++|+|+|+.+||||
T Consensus 316 lP~~~~kv~k-~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf~ 394 (474)
T TIGR03813 316 LPTFFQKTNK-NGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYR 394 (474)
T ss_pred CCHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeE
Confidence 9999999995 99999999999887544321 12 56677888888889999999999999999999999999
Q ss_pred cCCchhH---HHHHHHHhHHHHHHHH
Q 038994 404 VPMKLPG---LVIMCLIPSGFLVVIM 426 (471)
Q Consensus 404 ~~~~~~~---~~~~~~~~~~~~~~~~ 426 (471)
+|.+..+ ..+.+++.+.+.++..
T Consensus 395 ~p~g~~g~~~~~~~~~~~~~~~~~~~ 420 (474)
T TIGR03813 395 IPGGLAGMWFIGGLGFVGSALAFVLS 420 (474)
T ss_pred ecCCccchhHHHHHHHHHHHHHHhee
Confidence 9886443 3344444444444433
No 29
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=5.1e-45 Score=370.05 Aligned_cols=389 Identities=19% Similarity=0.246 Sum_probs=279.1
Q ss_pred ccccccchhHHHHHHHhhcccccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHhCC
Q 038994 31 KSKKLTLIPLIFLIYFEVAGGPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFP-GDGGFVIWADRAFGP 109 (471)
Q Consensus 31 ~~r~l~~~~~~~~~~~~~iG~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p-~~Gg~y~~~~~~~g~ 109 (471)
.+|+++.++++++.++.+.+ +...|. .+..|. ..+.-++++++++.+|.+++++|+++++| ++||.|.|+++++||
T Consensus 2 ~~~~l~~~~~~~~~~~~v~~-~~~~~~-~a~~G~-~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~ 78 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVLA-VYEYPT-FATSGF-HLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGE 78 (507)
T ss_pred CCcEeeHHHHHHHHHHHHHH-HHhhHH-HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCc
Confidence 36779999999999988754 455553 445666 34444666667678999999999999997 899999999999999
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHhcccc-CCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH-
Q 038994 110 FFGSLMGSWKFLSGVINIAAFPVLCI---DYLKKVIHPL-ESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVS- 184 (471)
Q Consensus 110 ~~g~~~g~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 184 (471)
++||.++|.+|+.+....+....... .|+.. .+.. .+++...+..++++++.+++|++|.|..++++.+..+..
T Consensus 79 ~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~ 157 (507)
T TIGR00910 79 RFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-FPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGI 157 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999977654443322222 33321 2222 234556666677788899999999999999987654433
Q ss_pred HHHHHHHHHHhh---ccccCCC--cc--ccCCCCCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHH
Q 038994 185 LSPFIIMSLAAI---PKIKPHR--WF--SSGQKGLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIF 257 (471)
Q Consensus 185 ~~~~~~~~~~~~---~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~ 257 (471)
++.++++++.+. ...++.. .+ +..+.....+....+...+|+|.|+|.+++++||+|||+||+||+++.++++
T Consensus 158 ~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~ 237 (507)
T TIGR00910 158 LIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIA 237 (507)
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHH
Confidence 222222222121 2222111 11 1111111112233445568899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCcccccccH---HHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Q 038994 258 TCVAYLIPLFAVIGAVNVDQSQWDSGF---HATAAEMIAG--KWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGF 332 (471)
Q Consensus 258 ~~~~y~l~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~ 332 (471)
+.++|.+..+.+....|+++...++.+ +........+ ++...++.+..+++.+++.++++.+.+|.+++++|||.
T Consensus 238 ~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~ 317 (507)
T TIGR00910 238 AICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGL 317 (507)
T ss_pred HHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 999999988887777887776544332 2333333332 44555677778888899999999999999999999999
Q ss_pred CchhhhhccCCCCCcHHHHHHHHHHHHHhhc----c------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCc
Q 038994 333 LPKFFGLRSKKFNTPWVGILVSTLITLGVSY----M------DFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPY 402 (471)
Q Consensus 333 lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~----~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (471)
+|++|+|+|| +++|+++++++.+++.++.+ . .+..+.++.+..+.+.|++.+++.+++|+|+|+.+|||
T Consensus 318 lP~~~~k~nk-~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf 396 (507)
T TIGR00910 318 LPAAFAKMNK-HEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTF 396 (507)
T ss_pred cCHHHHhhCc-CCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCe
Confidence 9999999995 89999999999888866431 1 14455667778899999999999999999999999999
Q ss_pred ccCCchh---HHHHHHHHhHHHHHH
Q 038994 403 RVPMKLP---GLVIMCLIPSGFLVV 424 (471)
Q Consensus 403 ~~~~~~~---~~~~~~~~~~~~~~~ 424 (471)
|.|.... .....+++.+++.++
T Consensus 397 ~~pg~~~~~~i~~~~~~~~~~~~~v 421 (507)
T TIGR00910 397 NIPGGIGGKLIIAGIGFLLSIFAFF 421 (507)
T ss_pred EecCCccchhhHHHHHHHHHHHHHh
Confidence 9987643 333333333443333
No 30
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-44 Score=367.90 Aligned_cols=382 Identities=26% Similarity=0.371 Sum_probs=319.8
Q ss_pred Cccccccccccchh-HHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHH
Q 038994 26 ATTTIKSKKLTLIP-LIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWA 103 (471)
Q Consensus 26 ~~~~~~~r~l~~~~-~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~ 103 (471)
.++++++|+++.++ ...+..+.++| +.+..+......++ ...++|++++++ ..+.+++++|+++++|++||.|.|+
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~-~~~~~~li~~~~-~~~~a~~~~el~~~~p~~GG~y~~~ 82 (466)
T COG0531 5 MMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAP-AAILAWLIAGII-ILFLALSYAELSSAIPSAGGAYAYA 82 (466)
T ss_pred ccchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhch-HHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCeeeeh
Confidence 34567789999999 88899998888 67777776665444 344447777775 5556999999999999999999999
Q ss_pred HHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc---cCCC-hhHHHHHHHHHHHHHHHhhccchhhHHHHHH
Q 038994 104 DRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHP---LESG-WPRSLAIMVSTCILSFLNFTGLTIVGYAAVL 179 (471)
Q Consensus 104 ~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 179 (471)
++.+||+.++.++|.+++.+....+........++...++. ...+ +....++.++.++..++|++|+|..++++.+
T Consensus 83 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~ 162 (466)
T COG0531 83 KRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINSI 162 (466)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999888874 2222 6788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCccccCCCC-CCCc---hhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHH
Q 038994 180 LGLVSLSPFIIMSLAAIPKIKPHRWFSSGQKG-LKKD---WNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAV 255 (471)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~ 255 (471)
...++++.++++++..+...+.+..+...... .... ....+...+|+|.|+|.+++++||+|||+|++||+++.++
T Consensus 163 ~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~ 242 (466)
T COG0531 163 ITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSL 242 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHH
Confidence 99999999988888877655544322221110 0111 2233445789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCcccc-cc-cHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCC
Q 038994 256 IFTCVAYLIPLFAVIGAVNVDQSQW-DS-GFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFL 333 (471)
Q Consensus 256 ~~~~~~y~l~~~~~~~~~~~~~~~~-~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~l 333 (471)
+.++++|++.........|+++... .+ .|.....+...+.+...++.+..+++.+++.+++..+.+|.+++|+|||.+
T Consensus 243 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~l 322 (466)
T COG0531 243 LIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLL 322 (466)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999888753332 22 678888888877788899999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCcHHHHHHHHHHHH-Hhhcc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCc
Q 038994 334 PKFFGLRSKKFNTPWVGILVSTLITL-GVSYM-----DFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPYRVPMK 407 (471)
Q Consensus 334 P~~~~~~~~r~~~P~~a~~~~~~~~~-~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (471)
|++|+|+|+|+++|++++++..+++. +.... .++.+.++.+....+.|.+..++...+|+|+++.+|++|.+..
T Consensus 323 P~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG0531 323 PKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLA 402 (466)
T ss_pred cHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccc
Confidence 99999999989999999999999998 33332 3678999999999999999999999999998888888888876
Q ss_pred hh
Q 038994 408 LP 409 (471)
Q Consensus 408 ~~ 409 (471)
..
T Consensus 403 ~~ 404 (466)
T COG0531 403 PL 404 (466)
T ss_pred ch
Confidence 44
No 31
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-46 Score=360.05 Aligned_cols=403 Identities=16% Similarity=0.225 Sum_probs=321.7
Q ss_pred CCCccccccccccchhHHHHHHHhhccccc----CChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChH
Q 038994 24 TVATTTIKSKKLTLIPLIFLIYFEVAGGPY----GEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGF 99 (471)
Q Consensus 24 ~~~~~~~~~r~l~~~~~~~~~~~~~iG~~~----~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~ 99 (471)
....++++||++++|+.++++++.+ |... .....+..+||...+|+|++++. +.++.+++++|+++++|++||.
T Consensus 39 ~lgYkqef~R~fs~~s~fg~sFs~~-g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~-~~i~va~slaEl~Sa~PtsGgL 116 (550)
T KOG1289|consen 39 ELGYKQELKREFSLFSIFGISFSLM-GLLPGIATSMAYGLGSGGPPTLVWGWLIAGF-FSICVALSLAELCSAMPTSGGL 116 (550)
T ss_pred HcCCchhhhhhhhHHHHHHHHHHHh-cchhhhhhheeeccccCChHHHHHHHHHHHH-HHHHHHhHHHHHHhhCCCCCcH
Confidence 3456899999999999999999987 5222 22333444788899999999999 5999999999999999999999
Q ss_pred HHHHHHH----hCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc-----CCChhHHHHHHHHHHHHHHHhhccc
Q 038994 100 VIWADRA----FGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPL-----ESGWPRSLAIMVSTCILSFLNFTGL 170 (471)
Q Consensus 100 y~~~~~~----~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~ 170 (471)
|.|+... +||..+|++||...+++....++...+.++.++...... .+.+..+.+..++.++..++|..+.
T Consensus 117 y~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~ 196 (550)
T KOG1289|consen 117 YFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPT 196 (550)
T ss_pred HHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCc
Confidence 9999976 456679999999999999999999999999988775322 2457788889999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccccCC-Cccc----cCCCCCCCchh-H------HHHHHHHHhhhhhhhhhhhh
Q 038994 171 TIVGYAAVLLGLVSLSPFIIMSLAAIPKIKPH-RWFS----SGQKGLKKDWN-L------FFNTLFWNLNFWDNVSTLAG 238 (471)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~-~------~~~~~~~af~G~e~~~~~~~ 238 (471)
|...+++.+.....++.+++..+..+...+.. .|.. ++..++..+|. . .+....|.+.|+|+.+|++|
T Consensus 197 r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aE 276 (550)
T KOG1289|consen 197 RVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAE 276 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHH
Confidence 99999999988888888777776665433222 1221 11111233444 1 12345689999999999999
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcccCCc--ccc--cccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 038994 239 EVDRPQKTFPVALLVAVIFTCVAYLIPLFAVIGAVNVDQ--SQW--DSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFE 314 (471)
Q Consensus 239 E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~--~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 314 (471)
|+|||+|+.||+|+.++.+..+.-....+.+....++|. ..+ .++|+.+++.+..|+.....+....++..+.+..
T Consensus 277 E~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi 356 (550)
T KOG1289|consen 277 ETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGI 356 (550)
T ss_pred HhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhH
Confidence 999999999999999999998888888888887777442 222 3589999999998887777788888888999999
Q ss_pred HHHhhhHHHHHHHHhcCCCc--hhhhhccCCCCCcHHHHHHHHHHHHHhhcc------CHHHHHHHHHHHHHHHHHHHHH
Q 038994 315 AQLSSSAYQILGMADLGFLP--KFFGLRSKKFNTPWVGILVSTLITLGVSYM------DFESIVASANFLYSLGMLLEFA 386 (471)
Q Consensus 315 ~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~ 386 (471)
+...+.||..|+.+|||.+| ++++++||++++|.+|+++..+++.++.++ .++.+.+.......++|..+.+
T Consensus 357 ~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~ 436 (550)
T KOG1289|consen 357 SSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIF 436 (550)
T ss_pred HHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999 999999998899999999999999887743 3788888888899999998888
Q ss_pred HHHHHHhhCCCCCCCcccCCchhHHHHHHHHhHHHHHHHHHHh
Q 038994 387 AFIWLRMKKPQLKRPYRVPMKLPGLVIMCLIPSGFLVVIMVVA 429 (471)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (471)
+.+.++|| .-.++||.+.+.-....+..+++..+.++.++.+
T Consensus 437 ~rlf~~r~-~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP 478 (550)
T KOG1289|consen 437 CRLFFGRD-DFRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFP 478 (550)
T ss_pred hheeeccc-ccCCCCccccccccchHHHHHHHHHHHHHHHhCC
Confidence 77776665 3345677776653334444477777777776665
No 32
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=3.7e-44 Score=381.43 Aligned_cols=417 Identities=16% Similarity=0.185 Sum_probs=313.9
Q ss_pred cccccccccchhHHHHH-HHhhcc-cccCChhHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCChHHHHH
Q 038994 28 TTIKSKKLTLIPLIFLI-YFEVAG-GPYGEEPAVK-AAGPLYALLGFMIFPFIWSIPEALITAELSTA-FPGDGGFVIWA 103 (471)
Q Consensus 28 ~~~~~r~l~~~~~~~~~-~~~~iG-~~~~~~~~~~-~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~-~p~~Gg~y~~~ 103 (471)
.+..+|++|+++.+++. +++++| ++|.-++.+. .+|....++.|++++++ +++++++|+|++++ +|++||.|.|+
T Consensus 71 ~~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~v-tlltaLS~seiaTng~p~aGG~Y~yi 149 (953)
T TIGR00930 71 PPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCV-TTITGLSMSAIATNGVVKGGGAYYLI 149 (953)
T ss_pred CCCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 34457899999999999 999999 6676666654 58876677888888885 99999999999998 99999999999
Q ss_pred HHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC------CChhHHHHHHHHHHHHHHHhhccchhhHHHH
Q 038994 104 DRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLE------SGWPRSLAIMVSTCILSFLNFTGLTIVGYAA 177 (471)
Q Consensus 104 ~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 177 (471)
+|++||.+|+..||.+++++....+.++.++++|+...++... +.....+++++++++++++|++|+|..+++|
T Consensus 150 sralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q 229 (953)
T TIGR00930 150 SRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQ 229 (953)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999988875321 1112356777888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccC-----------CCcccc---CCCCCCCchhHHHHHHHHHhhhhhhhhhhhhhccCC
Q 038994 178 VLLGLVSLSPFIIMSLAAIPKIKP-----------HRWFSS---GQKGLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRP 243 (471)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p 243 (471)
.++++++++.++.+.+.++..... +.+... ...+...++...+...+++|.|+|+.++++||+|||
T Consensus 230 ~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP 309 (953)
T TIGR00930 230 VLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDP 309 (953)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 999988888777666544321110 001100 000001124444455667999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccccccc------------------HHHH-----HHHHhhhHHHHHH
Q 038994 244 QKTFPVALLVAVIFTCVAYLIPLFAVIGAVNVDQSQWDSG------------------FHAT-----AAEMIAGKWLKIW 300 (471)
Q Consensus 244 ~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~------------------p~~~-----~~~~~~~~~~~~~ 300 (471)
+|++|||++.++.+++++|++..++.....+.+.....+. |... ............+
T Consensus 310 ~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~~~~l 389 (953)
T TIGR00930 310 QKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSPFPPL 389 (953)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhhhHHH
Confidence 9999999999999999999999987777666443221111 1000 0011111224567
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCc--hhhhhccCCCCCcHHHHHHHHHHHHHhh-ccCHHHHHHHHHHHH
Q 038994 301 LEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLP--KFFGLRSKKFNTPWVGILVSTLITLGVS-YMDFESIVASANFLY 377 (471)
Q Consensus 301 ~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 377 (471)
+.++.+++.+++.++++.+++|++++++|||.+| ++|+|+|+|+++|++|++++.+++.++. +.+++.+..+.+...
T Consensus 390 I~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~lis~~f 469 (953)
T TIGR00930 390 ITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPIISNFF 469 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999 8999999989999999999999998766 457899999999999
Q ss_pred HHHHHHHHHHHHHHHhhC-CCCCCCcccCCchhHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038994 378 SLGMLLEFAAFIWLRMKK-PQLKRPYRVPMKLPGLVIMCLIPSGFLVVIMVVATKIVYLVSGLMTLGAIGWYFFMKF 453 (471)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 453 (471)
+++|.+++++.+++|+++ |++++.||.. . .++++++.+.+++.++..+|... ++.++++..+|.+.++
T Consensus 470 Ll~Y~lvnla~~~l~~~~~p~~RP~fk~~-~----~~~sllG~l~c~~lmf~i~w~~a---li~~~i~~~ly~~~~~ 538 (953)
T TIGR00930 470 LASYALINFSCFHASLLRSPGWRPRFKYY-H----WWLSLLGASLCCAIMFLISWWAA---LVAMVIALFLYKYVTY 538 (953)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCccccc-h----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhc
Confidence 999999999999988655 4444445542 2 23445556666666666655333 3333334455554443
No 33
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=362.37 Aligned_cols=381 Identities=20% Similarity=0.229 Sum_probs=298.6
Q ss_pred cccccccccchhHHHHHHHhhcc-cccC-ChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CChHHHHHH
Q 038994 28 TTIKSKKLTLIPLIFLIYFEVAG-GPYG-EEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPG-DGGFVIWAD 104 (471)
Q Consensus 28 ~~~~~r~l~~~~~~~~~~~~~iG-~~~~-~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~-~Gg~y~~~~ 104 (471)
++++||+++.+|+.++++|.++| |.+. .+..+..+||...+++++++++. .++.++|++|++.++|+ +||.|.|++
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~-~~~~~~~~~E~~~~~P~~aGs~~~ya~ 103 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIA-ALLSALCLGEFAVRFPVSAGSFYTYAY 103 (554)
T ss_pred cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHH-HHHHHHHHHHHheecccccccceeeee
Confidence 36899999999999999999999 6654 45556778888999999999984 88899999999999999 599999999
Q ss_pred HHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc---------cccC-CChhHHHHHHHHHHHHHHHhh------c
Q 038994 105 RAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVI---------HPLE-SGWPRSLAIMVSTCILSFLNF------T 168 (471)
Q Consensus 105 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~------~ 168 (471)
+.+||.+||.+||.|++.|++..++++.+.+.+++++. +..+ ..|... ++.+...+|+ .
T Consensus 104 ~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~-----fla~~v~in~~gv~~~g 178 (554)
T KOG1286|consen 104 RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPD-----FLAFILIINLFGVLAYG 178 (554)
T ss_pred eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHH-----HHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999986 2211 122222 3333344444 4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccC-------CCC-CCCchhHHHHHHHHHhhhhhhhhhhhhhc
Q 038994 169 GLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKPHRWFSSG-------QKG-LKKDWNLFFNTLFWNLNFWDNVSTLAGEV 240 (471)
Q Consensus 169 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~af~G~e~~~~~~~E~ 240 (471)
+.+.....+.+++.+.++.+.+++..+....|+.+|.... +.+ ...++...+..++|+|.|+|.++..+||+
T Consensus 179 e~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~ 258 (554)
T KOG1286|consen 179 EVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA 258 (554)
T ss_pred ceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc
Confidence 4555555666666666655555555555555544444211 111 12233445566889999999999999999
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcccCCc--ccccc---cHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 038994 241 DRPQKTFPVALLVAVIFTCVAYLIPLFAVIGAVNVDQ--SQWDS---GFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEA 315 (471)
Q Consensus 241 k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~--~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 315 (471)
|||+|++|+|+..++..+.++|++..+.+...+|+++ +..+. +|+....+...-+..+.+++++++++..++.++
T Consensus 259 kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~ 338 (554)
T KOG1286|consen 259 KNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNS 338 (554)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876 44322 344433333344455569999999999999999
Q ss_pred HHhhhHHHHHHHHhcCCCchhhhhccCCCCCcHHHHHHHHHHHHHhhc-cC------HHHHHHHHHHHHHHHHHHHHHHH
Q 038994 316 QLSSSAYQILGMADLGFLPKFFGLRSKKFNTPWVGILVSTLITLGVSY-MD------FESIVASANFLYSLGMLLEFAAF 388 (471)
Q Consensus 316 ~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~-~~------~~~l~~~~~~~~~~~~~~~~~~~ 388 (471)
.++..+|.+++|++||.+|++|+++||| |+|++++++..+++.+..+ .+ ++.+.++.++..++.|.+++++.
T Consensus 339 ~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~ 417 (554)
T KOG1286|consen 339 SLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSH 417 (554)
T ss_pred HhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996 9999999999999887663 22 69999999999999999999999
Q ss_pred HHHHhhCCC-----CCCCcccCCchhHHHHHH
Q 038994 389 IWLRMKKPQ-----LKRPYRVPMKLPGLVIMC 415 (471)
Q Consensus 389 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 415 (471)
+++|+..++ .+.+|+.+...++.....
T Consensus 418 i~~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~ 449 (554)
T KOG1286|consen 418 LRFRYAMKVQGRSLDELPYKSPTGPYGSYYGL 449 (554)
T ss_pred eeeeecccccCCCcccccccCCCCCchhHHHH
Confidence 999876422 244677765555444443
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=2.2e-43 Score=354.50 Aligned_cols=360 Identities=28% Similarity=0.533 Sum_probs=300.1
Q ss_pred ccchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHH
Q 038994 35 LTLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGS 113 (471)
Q Consensus 35 l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 113 (471)
+|+|+..+++++.++| +++..+ ....+|+. .++++++++++..++.+++|+|+++++|++||.|.|+++.+||++|+
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~ 78 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGF 78 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchh
Confidence 5889999999999999 455555 55557774 67777887776458899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-c-CCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH-HHHHH
Q 038994 114 LMGSWKFLSGVINIAAFPVLCIDYLKKVIHP-L-ESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSL-SPFII 190 (471)
Q Consensus 114 ~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~ 190 (471)
..+|.+++.+....+.......+++...++. . +++++..+++++++++...+|++|.|..++++.+...+++ ..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~ 158 (426)
T PF13520_consen 79 IVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLV 158 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhh
Confidence 9999999999999988888899999877642 2 2346778888999999999999999999999999999999 56666
Q ss_pred HHHHhhccccCCCcc-------ccCCCCCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHH
Q 038994 191 MSLAAIPKIKPHRWF-------SSGQKGLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYL 263 (471)
Q Consensus 191 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~ 263 (471)
+++.++...+.+... +..+.+ ..+....+...+|+|.|+|.+++++||+|| ||+||++..+.+++.++|+
T Consensus 159 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~ 235 (426)
T PF13520_consen 159 LIILGIVSFSFSGFNSLSFSLSTFFPSG-WPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYI 235 (426)
T ss_dssp HHHHHHHSTTCCHHH----SHSCSSCSS-SSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHH
T ss_pred heeEEEeeecccccccccccccccCCcc-ccchhhHHHHHHhhcccccccccccccccc--hhheeecccchhHHHHHHh
Confidence 666666544433222 111111 112334455678999999999999999777 8999999999999999999
Q ss_pred HHHHHHHhcccCCcccccc---cHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhc
Q 038994 264 IPLFAVIGAVNVDQSQWDS---GFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLR 340 (471)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~ 340 (471)
+..++.....|+++....+ ++....+++.++++...++.+...++.+++.++.+.+.+|.+++++|||.+|++|+|+
T Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~ 315 (426)
T PF13520_consen 236 LFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKV 315 (426)
T ss_dssp HHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTT
T ss_pred hhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchhhhhhhc
Confidence 9999999999988765543 3677888888888899999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhh--c-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 038994 341 SKKFNTPWVGILVSTLITLGVS--Y-----MDFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKR 400 (471)
Q Consensus 341 ~~r~~~P~~a~~~~~~~~~~~~--~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (471)
| |+|+|++++++..+++.++. . .+++.+.+..++...+.|.+..++.+++|+|+|+.+|
T Consensus 316 ~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 381 (426)
T PF13520_consen 316 N-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR 381 (426)
T ss_dssp S-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH
T ss_pred c-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC
Confidence 9 69999999999999996543 1 1468899999999999999999999999999888765
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=4.3e-42 Score=349.68 Aligned_cols=372 Identities=20% Similarity=0.266 Sum_probs=264.3
Q ss_pred ccccccchhHHHHHHHhhcccccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CChHHHHHHHHhCC
Q 038994 31 KSKKLTLIPLIFLIYFEVAGGPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPG-DGGFVIWADRAFGP 109 (471)
Q Consensus 31 ~~r~l~~~~~~~~~~~~~iG~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~g~ 109 (471)
++|+++++++..++++.++|. ...+.....+||.. ++.+++.++++.++.+++++|+++++|+ +||.|+|+++.+||
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~-~~~~~~~~~~G~~~-i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~ 82 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGF-ANSPRAFYLMGYSA-IPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGP 82 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhC-CchHHHHHHcChHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCc
Confidence 478899999999999999883 24465667788854 4456666665678899999999999997 89999999999999
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHhccc----------cCCChhHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 038994 110 FFGSLMGSWKFLSGVINIAAFPVL-CIDYLKKVIHP----------LESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAV 178 (471)
Q Consensus 110 ~~g~~~g~~~~~~~~~~~a~~~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 178 (471)
++||..+|.++.++.......... ........++. ...+.....++++..++++++|.+|+|..+++++
T Consensus 83 ~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~ 162 (496)
T PRK15238 83 KFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVTS 162 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999999999888776654333211 11111111111 0111222345555666889999999999999998
Q ss_pred HHHHHHHHHHH----HHHHHhhccc-c---CCC---ccccCCCCC--CCchhHHHHHHHHHhhhhhhhhhhhhhccCCCc
Q 038994 179 LLGLVSLSPFI----IMSLAAIPKI-K---PHR---WFSSGQKGL--KKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQK 245 (471)
Q Consensus 179 ~~~~~~~~~~~----~~~~~~~~~~-~---~~~---~~~~~~~~~--~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k 245 (471)
+.+..++...+ +..+..+... + +.+ +.+...++. ..++...+....|+|.|+|..++++||+|||+|
T Consensus 163 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~ 242 (496)
T PRK15238 163 IGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEK 242 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCCc
Confidence 76665543221 1111111111 1 111 111000110 112333445578999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc------ccHHHHHHHHh-----------------hhHHHHHHHH
Q 038994 246 TFPVALLVAVIFTCVAYLIPLFAVIGAVNVDQSQWD------SGFHATAAEMI-----------------AGKWLKIWLE 302 (471)
Q Consensus 246 ~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~------~~p~~~~~~~~-----------------~~~~~~~~~~ 302 (471)
++||++..+...++++|++..+......|+++...+ +.|.. ..+.. .+.+...++.
T Consensus 243 ~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~~~~~~~ 321 (496)
T PRK15238 243 NFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVWFARITG 321 (496)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHHHHHHHH
Confidence 999999999999999999998877776766654322 12221 11211 1233444566
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccCCCCCcHHHHHHHHHHHHHhh-c--cC-------HHHHHHH
Q 038994 303 VGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSKKFNTPWVGILVSTLITLGVS-Y--MD-------FESIVAS 372 (471)
Q Consensus 303 ~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~-~--~~-------~~~l~~~ 372 (471)
+..+++.+++.++..++.+|.++..+|||.+|++|+|+|| +++|+++++++.+++.++. . .. ++.+.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk-~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~l 400 (496)
T PRK15238 322 LSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNK-NGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILTLM 400 (496)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCc-CCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 7778889999999999999999999999999999999995 9999999999988776553 1 11 6778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCc
Q 038994 373 ANFLYSLGMLLEFAAFIWLRMKKPQLKRPYRVPMK 407 (471)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (471)
.+....+.|++.+++.+++|| +|+.+||++.+..
T Consensus 401 ~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~~~~ 434 (496)
T PRK15238 401 ANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVVFKT 434 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-ccCCCCCceecCC
Confidence 999999999999999999876 5777888887544
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=2.4e-43 Score=358.19 Aligned_cols=368 Identities=27% Similarity=0.362 Sum_probs=290.7
Q ss_pred HHHHHHhhcc-cc-cCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHHHHHHH
Q 038994 41 IFLIYFEVAG-GP-YGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGSLMGSW 118 (471)
Q Consensus 41 ~~~~~~~~iG-~~-~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~ 118 (471)
.++++++++| +. ...+..+..+||...++++++++++ .++.+.+++|+++++|++||.|.|++|.+||..|+.+||.
T Consensus 3 ~~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~-~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~ 81 (478)
T PF00324_consen 3 FMISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGII-VLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWA 81 (478)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHH-HHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHH
Confidence 4566777777 44 4555567778887778889998885 8889999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHh--ccccCCChhH-HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 038994 119 KFLSGVINIAAFPVLCIDYLKKV--IHPLESGWPR-SLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAA 195 (471)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (471)
+++.+....+......+.+++.+ ++..+..+.. .+++.++.++.+.+|++|+|..++++.++..++++.++.+++..
T Consensus 82 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~ 161 (478)
T PF00324_consen 82 YWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVG 161 (478)
T ss_pred HHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhc
Confidence 99999999999988888887776 4443211211 13467788888999999999999999999999988887777666
Q ss_pred -hc---cccCCCc---ccc-C----CCC-----CCCchhH---HHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHH
Q 038994 196 -IP---KIKPHRW---FSS-G----QKG-----LKKDWNL---FFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAV 255 (471)
Q Consensus 196 -~~---~~~~~~~---~~~-~----~~~-----~~~~~~~---~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~ 255 (471)
+. ..++.+. ... . ..+ ...++.+ .+...+++|.|+|+.+.++||+|||+|++||++..++
T Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~ 241 (478)
T PF00324_consen 162 VIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSV 241 (478)
T ss_pred ccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhh
Confidence 21 1111111 000 0 000 1112333 3445788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCcccccc-----cHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Q 038994 256 IFTCVAYLIPLFAVIGAVNVDQSQWDS-----GFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADL 330 (471)
Q Consensus 256 ~~~~~~y~l~~~~~~~~~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d 330 (471)
+..+++|++..++.....|+++....+ +|+....+..+++....++.++.+.+.+++.++.++..+|++++|+||
T Consensus 242 ~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~d 321 (478)
T PF00324_consen 242 LRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARD 321 (478)
T ss_pred hhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhh
Confidence 999999999999999888887744332 588899999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhccCCCCCcHHHHHHHHHHHHHhhccC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----
Q 038994 331 GFLPKFFGLRSKKFNTPWVGILVSTLITLGVSYMD-------FESIVASANFLYSLGMLLEFAAFIWLRMKKPQLK---- 399 (471)
Q Consensus 331 ~~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 399 (471)
|.+|+.+.+.|+|+|+|++|++++.+++++..+.. ++.+.+..++..+..|.+.+++.+++|++.+..+
T Consensus 322 g~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~~~~~~~~ 401 (478)
T PF00324_consen 322 GLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRKKFKYRGRSIS 401 (478)
T ss_pred hhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhhhcccccccc
Confidence 99996666666679999999999999988766421 4456677788888999999999998888744332
Q ss_pred -CCcccCCchh
Q 038994 400 -RPYRVPMKLP 409 (471)
Q Consensus 400 -~~~~~~~~~~ 409 (471)
.+++.+....
T Consensus 402 ~~~~~~~~~~~ 412 (478)
T PF00324_consen 402 ELPFKSPFGPM 412 (478)
T ss_pred ccChhhhhhHH
Confidence 2566666543
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.97 E-value=5.2e-29 Score=246.09 Aligned_cols=358 Identities=15% Similarity=0.111 Sum_probs=257.4
Q ss_pred HHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHHHHHHHH
Q 038994 41 IFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGSLMGSWK 119 (471)
Q Consensus 41 ~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~ 119 (471)
.++.+++++| |++.+|...+..|....++..+++++ .+...+++++|+++++|++||.|+|+++.+||+.+++.+|.+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~-~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~ 81 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWF-LMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSL 81 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 4567788899 88999998776553334444555555 477889999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhccc-cCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038994 120 FLSGVINIAAFPVLCIDYLKKVIHP-LESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPK 198 (471)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (471)
++.......++....++++..+++. ....++.....+++.+++..+|++|.|..+|++.+.+..++..++++.+.+..+
T Consensus 82 ~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~ 161 (381)
T TIGR00837 82 LFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPH 161 (381)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9988777777777778888777663 223356666777788888899999999999999999999988888877777777
Q ss_pred ccCCCccccCCC-CCCCchhHHHHHHHHHhhhhh-hhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 038994 199 IKPHRWFSSGQK-GLKKDWNLFFNTLFWNLNFWD-NVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFAVIGAVNVD 276 (471)
Q Consensus 199 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~af~G~e-~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~ 276 (471)
.+++++.+.... ....+....++..+++| |+| ..+...+|.||++|++||++..+..+..++|++...+..+..|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~ 240 (381)
T TIGR00837 162 VKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRS 240 (381)
T ss_pred ccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 666655543211 00112233445566677 665 688889999877999999999999999999999999999999988
Q ss_pred cccc------cccHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccCCCCCcHH
Q 038994 277 QSQW------DSGFHATAAEM-IAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSKKFNTPWV 349 (471)
Q Consensus 277 ~~~~------~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ 349 (471)
+... +.+++.+..+. .++++...++..+..++..++.++...+..+. +++.+++.|++++ |..
T Consensus 241 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~~~~~~~~~-~~~ 310 (381)
T TIGR00837 241 EFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLFKFDDSKKG-RFK 310 (381)
T ss_pred HHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhCCCcccCC-Cch
Confidence 7642 22455555555 35566778888889999999999888776644 4444555555333 677
Q ss_pred HHHHHHHHHHHhhc-cCHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhCCCCCCCcccCCchhHHH
Q 038994 350 GILVSTLITLGVSY-MDFESIVASANFLYSL---GMLLEFAAFIWLRMKKPQLKRPYRVPMKLPGLV 412 (471)
Q Consensus 350 a~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (471)
+.+++.+..+++.. .....+..+...+... ...+..+..++.|||+++ .+||+|.......
T Consensus 311 ~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~~--~~~~~~~~~~~~~ 375 (381)
T TIGR00837 311 TGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLAWKARKKFPN--AGYRVWGGNKLLL 375 (381)
T ss_pred hhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCccccCChHHHH
Confidence 77777777776663 2222333333333333 333333444444554443 5899999865433
No 38
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.91 E-value=1.6e-21 Score=191.12 Aligned_cols=287 Identities=15% Similarity=0.152 Sum_probs=218.1
Q ss_pred ccccchhHHHHHHHhhcc-cccCChhHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCCh
Q 038994 33 KKLTLIPLIFLIYFEVAG-GPYGEEPAVKA-AGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPF 110 (471)
Q Consensus 33 r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~-~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~ 110 (471)
+++|.+|..++.+++++| +++..|..... +|+ ...+++++++++ .++.+++++|+++++|+. +.++|.++.+||.
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~-~~wi~~ll~~~~-~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQ-DGWISIILGGLI-IIFLLCLMIKIMSKFPEK-NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCC-CeeHHHHHHHHH-HHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHH
Confidence 368999999999999999 78888887665 555 455677777774 788899999999999987 6999999999999
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH-HH
Q 038994 111 FGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSP-FI 189 (471)
Q Consensus 111 ~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~ 189 (471)
.|++.+|.++.......+......+++++.... +..|.+...+.+.++....+..|++..+|++.+...+.+.. ++
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~ 154 (359)
T TIGR00912 78 LGRLLSILFILYFFLIAAYLIRIFADFIKTYLL---PRTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFIL 154 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988777777777778888766532 22567777788888888999999999999999888777665 24
Q ss_pred HHHHHhhccccCCCccccCCCCCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 038994 190 IMSLAAIPKIKPHRWFSSGQKGLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFAV 269 (471)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~ 269 (471)
++........+.++..|....+...-+.+......|+|.|+|......+|+||| |+.||++..+....+++|.+...+.
T Consensus 155 il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~~ly~~~~~~~ 233 (359)
T TIGR00912 155 VLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGVLLYILTTFVS 233 (359)
T ss_pred HHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 443434444455565554433211112223334568999999999999999997 5699999999999999999999999
Q ss_pred HhcccCCcccccccHHHHHHHHhhhH-HHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 038994 270 IGAVNVDQSQWDSGFHATAAEMIAGK-WLK---IWLEVGAVLSAIGLFEAQLSSSAYQILG 326 (471)
Q Consensus 270 ~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~---~~~~~~~~~~~~~s~~~~~~~~sR~l~~ 326 (471)
.+..++++......|..+..+....+ ... .++...-..+.+......++..++.+-+
T Consensus 234 i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~ 294 (359)
T TIGR00912 234 ISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSK 294 (359)
T ss_pred HheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988889999988887543 333 3333333444555555666666666543
No 39
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.89 E-value=8.4e-22 Score=193.38 Aligned_cols=385 Identities=15% Similarity=0.176 Sum_probs=261.8
Q ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038994 59 VKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFP-GDGGFVIWADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDY 137 (471)
Q Consensus 59 ~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p-~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~ 137 (471)
+..+|-...++-.++.++ +++.++.+++-+++.-- .+||.|...+|.+||-+|-.+|.+..++.....+.+.....+.
T Consensus 141 VG~AGv~q~fllv~iCC~-cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi 219 (1075)
T KOG2082|consen 141 VGMAGVGQGFLLVFICCL-CTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYLGTTVAAAMYILGAVEI 219 (1075)
T ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeeehhhhhhHHHHHHHHHhHHHH
Confidence 344444333332333333 57778888888888643 4799999999999999999999999999999999999988887
Q ss_pred HHH-hccccC--------C-----ChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhcc-ccC-
Q 038994 138 LKK-VIHPLE--------S-----GWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPK-IKP- 201 (471)
Q Consensus 138 ~~~-~~~~~~--------~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 201 (471)
+.. .+|... + ....-+...+++++.+++.+.|+|...+++.++..+.++.++.....++.. .++
T Consensus 220 ~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSIlaiyaG~i~~~~~~~ 299 (1075)
T KOG2082|consen 220 FLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLACVILSILAIYAGGIKSIFDPP 299 (1075)
T ss_pred HHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 755 455321 0 112235566777888888899999999999888777766555444333311 000
Q ss_pred --------------CCccc---------cC-----------------------CCCC---CCchhHH-------------
Q 038994 202 --------------HRWFS---------SG-----------------------QKGL---KKDWNLF------------- 219 (471)
Q Consensus 202 --------------~~~~~---------~~-----------------------~~~~---~~~~~~~------------- 219 (471)
..+.+ .. ..++ ..++.++
T Consensus 300 ~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y~~~nnvt~i~GipG~a~g~~~eNlws~Y 379 (1075)
T KOG2082|consen 300 GFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEYFSKNNVTEIQGIPGLASGVFKENLWSAY 379 (1075)
T ss_pred CCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccccccccceeecCCcchhhhhhhhhhhHhh
Confidence 00000 00 0000 0000000
Q ss_pred -----------------------------------HHHHHH-HhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHH
Q 038994 220 -----------------------------------FNTLFW-NLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYL 263 (471)
Q Consensus 220 -----------------------------------~~~~~~-af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~ 263 (471)
+.+.+| +.+|.-+-++.+++.|||+|+||.+.+.+.+....+|+
T Consensus 380 lekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYl 459 (1075)
T KOG2082|consen 380 LEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYL 459 (1075)
T ss_pred hcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHH
Confidence 011111 45688888999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCcccccc--cHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCc--hhhhh
Q 038994 264 IPLFAVIGAVNVDQSQWDS--GFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLP--KFFGL 339 (471)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP--~~~~~ 339 (471)
...+.+.++.....+.+.- +.-..+.......+-+|++.++.+++.++..+.++.++.|++++.|||+.+| +.|++
T Consensus 460 ssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~ 539 (1075)
T KOG2082|consen 460 SSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGH 539 (1075)
T ss_pred HHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcc
Confidence 9888887776532221110 0000111011112345778889999999999999999999999999999999 89999
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCCCCCCcccCCchhHHHHHHHH
Q 038994 340 RSKKFNTPWVGILVSTLITLGVS-YMDFESIVASANFLYSLGMLLEFAAFIWL-RMKKPQLKRPYRVPMKLPGLVIMCLI 417 (471)
Q Consensus 340 ~~~r~~~P~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (471)
.++ ++-|.+|++++.+++-..+ +.+.+.+....++.++++|.+++++.... -.|.|+++++||...+ ..+++
T Consensus 540 ~~~-ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaCavqtLLrtPnWRPRfkyyHW-----~LSfl 613 (1075)
T KOG2082|consen 540 GKA-NGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHW-----SLSFL 613 (1075)
T ss_pred ccC-CCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCccchhhhh-----HHHHH
Confidence 888 9999999999999986655 56789999999999999999999765444 4577888777776443 24555
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038994 418 PSGFLVVIMVVATKIVYLVSGLMTLGAIGWYFFMKF 453 (471)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 453 (471)
+...++..++...|...++ .+++..++|-+..+
T Consensus 614 G~sLC~~iMF~~SWyyAlv---Am~~a~~IYKYiEy 646 (1075)
T KOG2082|consen 614 GASLCLAIMFISSWYYALV---AMLIAGVIYKYIEY 646 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 5666666676666654443 33344455544433
No 40
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.89 E-value=2.6e-19 Score=172.43 Aligned_cols=334 Identities=14% Similarity=0.123 Sum_probs=241.2
Q ss_pred cc-cccCChhHHHh-hC-h-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHHHHHHHHHHHH-
Q 038994 49 AG-GPYGEEPAVKA-AG-P-LYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGSLMGSWKFLSG- 123 (471)
Q Consensus 49 iG-~~~~~~~~~~~-~G-~-~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~- 123 (471)
.| |-+-.|+.+.. +| + ...+++|++.++. ....+++ +.|++||.|.+.++..||++|++.+|..++..
T Consensus 9 fGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~-lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~l~iG 81 (378)
T TIGR00796 9 FGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVG-LPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILYLTIG 81 (378)
T ss_pred HhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHH-HHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 45 55667776655 44 3 4567889888874 3334443 89999999999999999999999999877532
Q ss_pred hhH----HHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 038994 124 VIN----IAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKI 199 (471)
Q Consensus 124 ~~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (471)
... .+..++..+ +..++|.........+..+++..+..++|+++.|...+++.+.+..+++.++++++.++.+.
T Consensus 82 P~~aiPRtaa~s~e~~--i~p~~~~~~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~g~~~p 159 (378)
T TIGR00796 82 PLFAIPRTATVSFEMG--IAPLLHSPTSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIKALLWP 159 (378)
T ss_pred hchhhhHHHHHHHHHH--HHhccCcccchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222 233333322 33444431122344556666777777799999999999999999999999888888877653
Q ss_pred cCCCccccCCCCCC-CchhHHHHHHHHHhh-------hhhhhhhhhh-hccCCCcchhHHHHHHH-HHHHHHHHHHHHHH
Q 038994 200 KPHRWFSSGQKGLK-KDWNLFFNTLFWNLN-------FWDNVSTLAG-EVDRPQKTFPVALLVAV-IFTCVAYLIPLFAV 269 (471)
Q Consensus 200 ~~~~~~~~~~~~~~-~~~~~~~~~~~~af~-------G~e~~~~~~~-E~k~p~k~ip~ai~~~~-~~~~~~y~l~~~~~ 269 (471)
..+...+.... .+ ..+...+....+.+. |+-.+....+ |.|||+|+.|+.+..++ ..+.+.|+...+..
T Consensus 160 ~g~~~~~~~~~-~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~ 238 (378)
T TIGR00796 160 AGPILAASGAY-ASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFY 238 (378)
T ss_pred CCCcCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32211111111 11 234455555556666 8888888888 99999999999999999 56677788888888
Q ss_pred HhcccCCccc---ccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccCCCCC
Q 038994 270 IGAVNVDQSQ---WDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSKKFNT 346 (471)
Q Consensus 270 ~~~~~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~ 346 (471)
.+..+.++.. +.+..+.++.++..|+....++.+.+.++++++.++...+.+ ++|+|.++| .
T Consensus 239 lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a-------------~~f~~~~~k--~ 303 (378)
T TIGR00796 239 LGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACS-------------EYFHKLVPK--L 303 (378)
T ss_pred HhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhcCC--C
Confidence 8877765443 245678899999999999999999999999999999887755 455677663 9
Q ss_pred cHHHHHHHHHHHHH-hhccCHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhCCCCCCCcccCCc
Q 038994 347 PWVGILVSTLITLG-VSYMDFESIVASANFLYSLGMLLEFAAFIW--LRMKKPQLKRPYRVPMK 407 (471)
Q Consensus 347 P~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 407 (471)
|+++.+....+... +...+++.+.++..-...+.|-+.....+. +|++.|+.+|+||.+..
T Consensus 304 ~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~~~ 367 (378)
T TIGR00796 304 SYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQITLI 367 (378)
T ss_pred CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehHHH
Confidence 99998877666654 447899999999887777777766666555 78888887899998653
No 41
>PRK10483 tryptophan permease; Provisional
Probab=99.88 E-value=7.6e-19 Score=170.29 Aligned_cols=372 Identities=12% Similarity=0.108 Sum_probs=261.8
Q ss_pred cccccccchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhC
Q 038994 30 IKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFG 108 (471)
Q Consensus 30 ~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g 108 (471)
.+|++.+.++..++..|+.+| |.+++|...+..|-...+...++.-. ++..+++.+.|.+.++|+.-+.-..+++.+|
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~-~M~~taLlllEv~l~~~~g~~~~tma~~~LG 84 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWF-CMLHSGLMILEANLNYRIGSSFDTITKDLLG 84 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 457788999999999999999 78999998888886555544444333 5778899999999999998889999999999
Q ss_pred ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 038994 109 PFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPF 188 (471)
Q Consensus 109 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 188 (471)
+.+..+.+..+.+-......++....++.+++.++..+-+.+.+...+++..++..+.+.|.|..+|+++++...+++.+
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f 164 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITF 164 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 99888888888777667777888888888888876533345677888888999999999999999999999999998888
Q ss_pred HHHHHHhhccccCCCccccCCCCCCC---chhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 038994 189 IIMSLAAIPKIKPHRWFSSGQKGLKK---DWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIP 265 (471)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~ 265 (471)
+..+....++.+.++..+..... .. .....++..+++|.-...++++.++.++-.|+++|++..+..+..++|++.
T Consensus 165 ~~~~~~l~~~i~~~~L~~~~~~~-~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W 243 (414)
T PRK10483 165 FLTFGSLLGHVQPATLFNVAESN-ASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIW 243 (414)
T ss_pred HHHHHHHHhhcCHHHHhcccccc-chhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777767776665544332221 11 133556677888888899999999988655789999999999999999999
Q ss_pred HHHHHhcccCCcccc---ccc---H-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhh
Q 038994 266 LFAVIGAVNVDQSQW---DSG---F-HATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFG 338 (471)
Q Consensus 266 ~~~~~~~~~~~~~~~---~~~---p-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~ 338 (471)
..++.+.+|.++... +++ . ...+.+....+....+..++..++..+|+.+...+....+..+-+.
T Consensus 244 ~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~-------- 315 (414)
T PRK10483 244 LLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGF-------- 315 (414)
T ss_pred HHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------
Confidence 999999998765321 111 1 2334444455677778888888899999988888877777655332
Q ss_pred hccCCCCCcHHHHHHHHHHHHHhhccC---HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCCCCCcccCCchhHHHHH
Q 038994 339 LRSKKFNTPWVGILVSTLITLGVSYMD---FESIVASANFLY-SLGMLLEFAAFIWLRMKKPQLKRPYRVPMKLPGLVIM 414 (471)
Q Consensus 339 ~~~~r~~~P~~a~~~~~~~~~~~~~~~---~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (471)
.+++.+ .....+++.+..+++.+.. |..-.+++.... .+.-+++.+.+.+.|+|.+ +++|++|.+.+....+
T Consensus 316 -~~~~~~-r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~~--~~~y~v~Gg~~~l~~~ 391 (414)
T PRK10483 316 -DDSAMG-RFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFG--SPKFRVWGGKPMIVLI 391 (414)
T ss_pred -CCcccc-ceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCceecCCHHHHHHH
Confidence 111111 1112223444444444332 333333333332 2233334344444443322 4679999886655444
Q ss_pred H
Q 038994 415 C 415 (471)
Q Consensus 415 ~ 415 (471)
.
T Consensus 392 ~ 392 (414)
T PRK10483 392 L 392 (414)
T ss_pred H
Confidence 3
No 42
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.87 E-value=4.7e-21 Score=186.82 Aligned_cols=387 Identities=20% Similarity=0.178 Sum_probs=259.9
Q ss_pred cccchhHHHHHHHhhccc---ccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHhCC
Q 038994 34 KLTLIPLIFLIYFEVAGG---PYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFP-GDGGFVIWADRAFGP 109 (471)
Q Consensus 34 ~l~~~~~~~~~~~~~iG~---~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p-~~Gg~y~~~~~~~g~ 109 (471)
++++++.++.-..--+=+ .+-.+..+..+|-.-.+.-++++=. +.+++.++..-+++.-- +.||.|..++|.+||
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~-I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYA-ILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHH-HHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 888877665332211111 1122233344454333322233222 24445666666666544 469999999999999
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc----------cC-CChhHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 038994 110 FFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHP----------LE-SGWPRSLAIMVSTCILSFLNFTGLTIVGYAAV 178 (471)
Q Consensus 110 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 178 (471)
.+|-..|-...++++..++.+...+.+-+.+.++. ++ ..|...+.+..++.+...+.+.|-..++|..+
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas~ 224 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKASN 224 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhhh
Confidence 99999999999999999999999999988877752 11 46778888888888999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHhhcccc----------CCCccccCCCC-CCCchh-----------------------HHHHHHH
Q 038994 179 LLGLVSLSPFIIMSLAAIPKIK----------PHRWFSSGQKG-LKKDWN-----------------------LFFNTLF 224 (471)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~~~-----------------------~~~~~~~ 224 (471)
+..++...-+....+-.+..+. +....+.-..+ ...+|. ..+...+
T Consensus 225 i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F 304 (945)
T KOG1288|consen 225 ILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFF 304 (945)
T ss_pred hhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeee
Confidence 5443322222111111111111 11000000000 011222 1122222
Q ss_pred HHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHH
Q 038994 225 WNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVG 304 (471)
Q Consensus 225 ~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 304 (471)
=+-.|.-+-+++++|.|+|+|.|||+.+.++....+.|++..+.+....|...+.++- .+...+ ....+++.++
T Consensus 305 ~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy----~v~~~i--sl~p~fi~iG 378 (945)
T KOG1288|consen 305 PGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDY----DVMMHI--SLHPPFILIG 378 (945)
T ss_pred ccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhch----hheeec--cccchHHHHH
Confidence 2456888899999999999999999999999999999999999988777755443221 111111 1123455556
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCc--hhhhhccCCCCCcHHHHHHHHHHHHHhhc-cCHHHHHHHHHHHHHHHH
Q 038994 305 AVLSAIGLFEAQLSSSAYQILGMADLGFLP--KFFGLRSKKFNTPWVGILVSTLITLGVSY-MDFESIVASANFLYSLGM 381 (471)
Q Consensus 305 ~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~a~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 381 (471)
.+...+.+.++.+.+++|++-++|||+.+| -.|+|...+.+.|+.++.+++++.-++.+ .+++.+..+.+..++++|
T Consensus 379 i~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlty 458 (945)
T KOG1288|consen 379 ILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLTY 458 (945)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666677777888999999999999999999 67788888889999999999999877664 589999999999999999
Q ss_pred HHHHHHHHHHHhh-CCCCCCCcccCCchhHHHHHHHHhHHHHHHHHHHhhHH
Q 038994 382 LLEFAAFIWLRMK-KPQLKRPYRVPMKLPGLVIMCLIPSGFLVVIMVVATKI 432 (471)
Q Consensus 382 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (471)
..+.++.+.++.. .|+.++.||.-.+ -.++++.+..+..++.-+..
T Consensus 459 ~~vNLacl~LeissAPNFRPtFkyF~w-----~TclvG~l~s~~mMfvVd~~ 505 (945)
T KOG1288|consen 459 GAVNLACLLLEISSAPNFRPTFKYFNW-----HTCLVGVLLSLGMMFVVDRI 505 (945)
T ss_pred HHHHHHHHHhhhccCCCCCchhhhhhH-----HHHHHHHHHHHhhhheecch
Confidence 9999999988765 4676666775332 23444455555555555443
No 43
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.87 E-value=8.7e-19 Score=171.70 Aligned_cols=366 Identities=19% Similarity=0.213 Sum_probs=264.4
Q ss_pred cccchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhH
Q 038994 34 KLTLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFG 112 (471)
Q Consensus 34 ~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 112 (471)
+-+.++..++..|+.+| |++++|...+..|-...++..++... +....++.++|.+.+.|+..+.-..++|.+|++++
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~-~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~ 80 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWP-LMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGG 80 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHH
Confidence 44778899999999999 78999998888887665655555544 47778999999999999988999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC-CChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH
Q 038994 113 SLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLE-SGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIM 191 (471)
Q Consensus 113 ~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 191 (471)
++.+..+.+.......++....++.+.+.++... .+.+.......+..++..+-+.|.|...|++..+...+++.++++
T Consensus 81 ~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~~l 160 (394)
T PF03222_consen 81 IVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFIIL 160 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877788888888998888876432 345666777777777788888999999999999999999998888
Q ss_pred HHHhhccccCCCccccCCCCCCCchh---HHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 038994 192 SLAAIPKIKPHRWFSSGQKGLKKDWN---LFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFA 268 (471)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~ 268 (471)
.+..+++.+.++....... ..+|. ..++..+++|.-...++.+.+..++-+|+++|++..+..+..+.|++...+
T Consensus 161 ~~~~~p~~~~~~L~~~~~~--~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~ 238 (394)
T PF03222_consen 161 VVYLIPHWNPSNLLDAPPS--PSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFS 238 (394)
T ss_pred HHHHhhhcCHHHhhccccc--cccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877765542211 23443 456678899999999999999999777889999999999999999999999
Q ss_pred HHhcccCCccc---ccc---cHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhcc
Q 038994 269 VIGAVNVDQSQ---WDS---GFHATAAE-MIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRS 341 (471)
Q Consensus 269 ~~~~~~~~~~~---~~~---~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~ 341 (471)
+.+.+|.++.. +.+ .++....+ ...++.......++..++..+|+.+...+..+.+... +++.|
T Consensus 239 ~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~---------~k~~~ 309 (394)
T PF03222_consen 239 ILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADL---------FKLKN 309 (394)
T ss_pred HHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HcCCc
Confidence 99988876532 122 23333333 3456778888889999999999999888877776433 22212
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccC---HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhHHHHH
Q 038994 342 KKFNTPWVGILVSTLITLGVSYMD---FESIVASANFL-YSLGMLLEFAAFIWLRMKKPQLKRPYRVPMKLPGLVIM 414 (471)
Q Consensus 342 ~r~~~P~~a~~~~~~~~~~~~~~~---~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (471)
+ .+.-.....++.+..+++.+.. |....++.... ..+..+++.+...+.|+|++ +++|+.+.+......+
T Consensus 310 ~-~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~~il~~ilP~~m~~~~r~~~~--~~~~~~~gg~~~l~~~ 383 (394)
T PF03222_consen 310 N-SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAGIGIAILLGILPALMVWKARKRKP--KQPYRVPGGNFTLLLV 383 (394)
T ss_pred c-ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHcccC--CCCeEEeCcHHHHHHH
Confidence 2 1111223333344444444332 44444444433 23333444444455444443 4558988775444333
No 44
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.86 E-value=5.8e-18 Score=163.99 Aligned_cols=373 Identities=12% Similarity=0.051 Sum_probs=256.7
Q ss_pred cchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHHH
Q 038994 36 TLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGSL 114 (471)
Q Consensus 36 ~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~ 114 (471)
+.+...++..|+.+| |.+++|...+..|-...++..++.-+ ++..+++.+.|.+.++|..-+.-..+++.+|+.+..+
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~-~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i 88 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWF-SMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNII 88 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHH
Confidence 677789999999999 78999998888886555544444333 5788899999999999998889999999999998888
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhccc-cCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 038994 115 MGSWKFLSGVINIAAFPVLCIDYLKKVIHP-LESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSL 193 (471)
Q Consensus 115 ~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 193 (471)
.+..+.+-......++....++.++..++. .+-+.+.....+++.+++..+.+.|.|...|+++++...+++.++..+.
T Consensus 89 ~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~~~~ 168 (415)
T PRK09664 89 SGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVFG 168 (415)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887776777778888888888888754 2223455566688888899999999999999999999888888887777
Q ss_pred HhhccccCCCccccCCCCCCC----chhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 038994 194 AAIPKIKPHRWFSSGQKGLKK----DWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFAV 269 (471)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~ 269 (471)
...++.++++........... .....++..+++|.-...++++....++-.|+++|++..+..+..++|++...++
T Consensus 169 ~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~i 248 (415)
T PRK09664 169 SFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCT 248 (415)
T ss_pred HHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776654433221011 1233566677888888888888888886668899999999999999999999999
Q ss_pred HhcccCCccc---ccccHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccC
Q 038994 270 IGAVNVDQSQ---WDSGFH----ATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSK 342 (471)
Q Consensus 270 ~~~~~~~~~~---~~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~ 342 (471)
.+.+|.++.. .++... ....+...+++...+..++..++..+|+.+...+....+..+-+ +.++
T Consensus 249 lG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~---------~~~~ 319 (415)
T PRK09664 249 MGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFK---------IDNS 319 (415)
T ss_pred hcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCCc
Confidence 9988876532 111222 22333345566777788888888888988888777766655432 2211
Q ss_pred -CCCCcHHHHHHHHHHHHHhhccC---HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhHHHHHHHH
Q 038994 343 -KFNTPWVGILVSTLITLGVSYMD---FESIVASANF-LYSLGMLLEFAAFIWLRMKKPQLKRPYRVPMKLPGLVIMCLI 417 (471)
Q Consensus 343 -r~~~P~~a~~~~~~~~~~~~~~~---~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (471)
+.|... ..++.+..+++.+.. |..-.+++.. ...+.-+++.+-+.+.|+|.+ +.+||+|.+.....++.+.
T Consensus 320 ~~~r~~~--~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~~--~~~y~v~GG~~~l~~~~~~ 395 (415)
T PRK09664 320 HGGRFKT--VLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFP--NQMFTVWGGNLIPAIVILF 395 (415)
T ss_pred cccceee--ehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCceeeCCHHHHHHHHHH
Confidence 122222 223334444433322 3333333333 333333444444444443323 4679999987665555444
Q ss_pred hHHHH
Q 038994 418 PSGFL 422 (471)
Q Consensus 418 ~~~~~ 422 (471)
+++..
T Consensus 396 g~~ii 400 (415)
T PRK09664 396 GITVI 400 (415)
T ss_pred HHHHH
Confidence 44333
No 45
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.86 E-value=6.2e-18 Score=164.83 Aligned_cols=367 Identities=16% Similarity=0.137 Sum_probs=259.4
Q ss_pred cchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHHH
Q 038994 36 TLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGSL 114 (471)
Q Consensus 36 ~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~ 114 (471)
+.+...++..|+.+| |.+++|...+.+|....+...++... +....++.++|.+.+.|...+.-+.+++.+|++.+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~-~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWA-LMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 567888999999999 78999998888887555544444433 3666788899998888887789999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhccc-cCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 038994 115 MGSWKFLSGVINIAAFPVLCIDYLKKVIHP-LESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSL 193 (471)
Q Consensus 115 ~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 193 (471)
....|.+.......++....++.+.+.++. ...+.+.....+.+..+...+-+.|.|...|++.++...+++.++....
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~~~ 162 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVMLA 162 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987777788888866666555432 1112244456666666667788889999999999999888888877777
Q ss_pred HhhccccCCCccccCCCCCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 038994 194 AAIPKIKPHRWFSSGQKGLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFAVIGAV 273 (471)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~ 273 (471)
...++.+.+++.....+ .......++..+++|.-...++++....++-+|+++|++..+..+..++|++...++.+..
T Consensus 163 ~l~p~~~~~~L~~~~~~--~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l 240 (403)
T PRK15132 163 LMMPHIHKVNLLTLPLQ--QGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSI 240 (403)
T ss_pred HHHHhcCHHHHhcCCcc--ccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77787777665432211 1124566777889999999999999998887789999999999999999999999999999
Q ss_pred cCCccc---ccc----cHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccCCCCC
Q 038994 274 NVDQSQ---WDS----GFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSKKFNT 346 (471)
Q Consensus 274 ~~~~~~---~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~ 346 (471)
|.++.. .++ +.+..+.+....++...+..++..++..+|+.+...+....+..+-+.+ .+++.|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--------~~~~~r~ 312 (403)
T PRK15132 241 DSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--------NTVGGRL 312 (403)
T ss_pred CHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--------ccccCCc
Confidence 877532 112 2345555556677888888888999999999998888888877654321 1111222
Q ss_pred cHHHHHHHHHHHHHhhccC---HHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhHHHHHHHH
Q 038994 347 PWVGILVSTLITLGVSYMD---FESIVASAN-FLYSLGMLLEFAAFIWLRMKKPQLKRPYRVPMKLPGLVIMCLI 417 (471)
Q Consensus 347 P~~a~~~~~~~~~~~~~~~---~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (471)
...+++.+..+++.+.+ |....++.. ....+.++++.....+.|++++ +++||+|.+.....++...
T Consensus 313 --~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~~~--~~~y~v~gg~~~~~~v~~~ 383 (403)
T PRK15132 313 --QTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQNP--QAGYRVKGGRPALALVFLC 383 (403)
T ss_pred --hhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCccCCCChHHHHHHHHH
Confidence 22333444444444333 333333333 3444455555556666554422 4579999886644444333
No 46
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.85 E-value=4.4e-19 Score=173.37 Aligned_cols=288 Identities=13% Similarity=0.060 Sum_probs=214.8
Q ss_pred HHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CChHHHHHHHHhCChhHHHHHHHH
Q 038994 42 FLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPG-DGGFVIWADRAFGPFFGSLMGSWK 119 (471)
Q Consensus 42 ~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~g~~~g~~~g~~~ 119 (471)
...+++.+| |++.+|...+..|....+++.+++.. .+...+..+.|.....|+ ..+.++++++.+|++.|.+.++.|
T Consensus 10 ~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~p-l~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY 88 (397)
T TIGR00814 10 LGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYP-LTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLY 88 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHH
Confidence 445566678 78888887665665444444443333 234445566676555555 678999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhccc-c-CCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 038994 120 FLSGVINIAAFPVLCIDYLKKVIHP-L-ESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIP 197 (471)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (471)
++........++....+.+.+++.. . .+..++.+..+.+.++...++..|.|..+|++.++....++.++++.+..++
T Consensus 89 ~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip 168 (397)
T TIGR00814 89 FFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIP 168 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888887777777666543 1 1223455677777777789999999999999999998888888888888888
Q ss_pred cccCCCccccCCCC-CCCchhHHHHHHHHHhhhhhhhhhhh----hhccCC---CcchhHHHHHHHHHHHHHHHHHHHHH
Q 038994 198 KIKPHRWFSSGQKG-LKKDWNLFFNTLFWNLNFWDNVSTLA----GEVDRP---QKTFPVALLVAVIFTCVAYLIPLFAV 269 (471)
Q Consensus 198 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~af~G~e~~~~~~----~E~k~p---~k~ip~ai~~~~~~~~~~y~l~~~~~ 269 (471)
+.+.++....+..+ ........++..+|+|.|+|..++++ ||.+|| +|+..|++..+..+..++|+...+++
T Consensus 169 ~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~ 248 (397)
T TIGR00814 169 HWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSC 248 (397)
T ss_pred HcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777765332211 01223455677899999999999998 777655 57789999999999999999999999
Q ss_pred HhcccCCcccc----cccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Q 038994 270 IGAVNVDQSQW----DSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADL 330 (471)
Q Consensus 270 ~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d 330 (471)
....++++... +-+.+..+.+....+....+...+..++..+|+.+...+....+..+-++
T Consensus 249 ~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~ 313 (397)
T TIGR00814 249 VLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLN 313 (397)
T ss_pred hccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99998876432 12234555556667777888888888889999999988888888777643
No 47
>PHA02764 hypothetical protein; Provisional
Probab=99.83 E-value=1.8e-18 Score=155.10 Aligned_cols=278 Identities=16% Similarity=0.131 Sum_probs=171.5
Q ss_pred CccccccccccchhHHHHHHHhhcccc-cCChhHHHh--hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHH
Q 038994 26 ATTTIKSKKLTLIPLIFLIYFEVAGGP-YGEEPAVKA--AGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIW 102 (471)
Q Consensus 26 ~~~~~~~r~l~~~~~~~~~~~~~iG~~-~~~~~~~~~--~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~ 102 (471)
+++..+.|+.+.+|++...++.+.++. ...+..... .|+ ..+++|++++++ +++.+++|+|+++++|++||.|.|
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~-nlLLAWLLGGLl-ALPgAL~YAELGSAmPrAGGdYVY 82 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNV-NLLFAILIGAVF-EIPLLLMYYKLTTKFPLNGGDYAY 82 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCch-hHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCceEEE
Confidence 456788999999999999999884433 222332222 233 467889999985 999999999999999999999999
Q ss_pred HHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 038994 103 ADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGL 182 (471)
Q Consensus 103 ~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 182 (471)
.+|++||.+|++.||..|..+....++.+-... ++...+ +......... -+.....+-..|.+...|...+...
T Consensus 83 ISRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~--~~~~i~---~~~~~f~~~~-s~~~i~~~i~~~~~~~~~~v~il~~ 156 (399)
T PHA02764 83 IRTAFSSKFYTIFGISLWLTYVLSQPILGDLVL--LNFNIQ---NQFEQFLIVE-SLFPIVLLIIANKKIYAKIVDILAI 156 (399)
T ss_pred hHHhhCccHHHHHHHHHHHHHHhhcchhhheee--eeeeeH---HHHHHHHHHH-HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999999988877655432211 000011 1111111111 2222333334567778777665333
Q ss_pred HHHHHHHHHHHHhhccccCCCccccCCCCCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHH
Q 038994 183 VSLSPFIIMSLAAIPKIKPHRWFSSGQKGLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAY 262 (471)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y 262 (471)
...+ ..+... .+.-++...+.+-++ .....+....-+|.=.|+...+++|.||-+|....+...+-..+.++-
T Consensus 157 a~~i---~aif~~---~~s~n~~~~~f~~sn-t~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~~~ 229 (399)
T PHA02764 157 AQII---IAIFIA---FKSFNFQYQNFTISN-TLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAILS 229 (399)
T ss_pred HHHH---HHHHhh---ccceeEEEcceeehH-HHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHHHH
Confidence 3222 111111 111122211111100 111111122345667799999999999999988888877766655543
Q ss_pred HHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccC
Q 038994 263 LIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSK 342 (471)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~ 342 (471)
+... +.+ +. +.-+.+.+..++-+....--.||+.++|+.|+.+|+.|+|.||
T Consensus 230 ii~s--------y~n-------~~-------------il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~lpe~f~k~~~ 281 (399)
T PHA02764 230 IIDS--------YSN-------LN-------------ILFALMPIWFFSYMPIANKIQSRLIQTMSFDKVLPEKFSKINP 281 (399)
T ss_pred HHHh--------hhh-------HH-------------HHHHHHHHHHHhheeeecchHHHHHHHHHhhhhchHHHhccCC
Confidence 3322 110 00 1111133344444444455689999999999999999999998
Q ss_pred CCCCcH
Q 038994 343 KFNTPW 348 (471)
Q Consensus 343 r~~~P~ 348 (471)
++|.
T Consensus 282 --nv~~ 285 (399)
T PHA02764 282 --NVLL 285 (399)
T ss_pred --Ccee
Confidence 6777
No 48
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.80 E-value=2.2e-16 Score=152.99 Aligned_cols=371 Identities=12% Similarity=0.030 Sum_probs=251.9
Q ss_pred HHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCChHHHHHHHHhCChhHHHHHHHH
Q 038994 42 FLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAF-PGDGGFVIWADRAFGPFFGSLMGSWK 119 (471)
Q Consensus 42 ~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~-p~~Gg~y~~~~~~~g~~~g~~~g~~~ 119 (471)
....|+.+| |.+.+|-..+.+|....++..+++.. ++...+..+.|..... |+..+.-+-+++.+|+.++.+.+..|
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p-~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilY 104 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-IAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLY 104 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHH
Confidence 445566678 78899998888887665555555444 4777789999999998 55567888899999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhccc-cC-CChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 038994 120 FLSGVINIAAFPVLCIDYLKKVIHP-LE-SGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIP 197 (471)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (471)
.+.......++.....+.+.+++.+ .+ ++.++++..+++..+...+...|.|...|++.++...+++.++.+.+..++
T Consensus 105 ff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~LiP 184 (443)
T PRK13629 105 FFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIP 184 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987777777777777777665322 22 134688888889999999999999999999999999999999999999999
Q ss_pred cccCCCccccCC----CCCCCc----hhHHHHHHHHHhhhhhhhhhhhhh----cc------CCCcchhHHHHHHHHHHH
Q 038994 198 KIKPHRWFSSGQ----KGLKKD----WNLFFNTLFWNLNFWDNVSTLAGE----VD------RPQKTFPVALLVAVIFTC 259 (471)
Q Consensus 198 ~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~af~G~e~~~~~~~E----~k------~p~k~ip~ai~~~~~~~~ 259 (471)
+.+.+++...+. .....+ ....++..+++|.-...+++++.. .+ +.+|+..|++..+..+..
T Consensus 185 ~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~l 264 (443)
T PRK13629 185 YWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMV 264 (443)
T ss_pred HcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH
Confidence 888776653321 100111 334456677888766666665544 32 235789999999999999
Q ss_pred HHHHHHHHHHHhcccCCccc---ccccH-HHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 038994 260 VAYLIPLFAVIGAVNVDQSQ---WDSGF-HATAAEMIAG---------KWLKIWLEVGAVLSAIGLFEAQLSSSAYQILG 326 (471)
Q Consensus 260 ~~y~l~~~~~~~~~~~~~~~---~~~~p-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~ 326 (471)
++|++..+++.+.+|+|+.. .++.+ +..+++...+ +....+..++..++..+|+.+...+..-.+..
T Consensus 265 v~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~g 344 (443)
T PRK13629 265 AVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNG 344 (443)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988743 23444 7777777766 66778888888889999999999888888887
Q ss_pred HHhcCCC-chhhhhccCCCCCcHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccC
Q 038994 327 MADLGFL-PKFFGLRSKKFNTPWVGILVSTLITLGVSYMDFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPYRVP 405 (471)
Q Consensus 327 ~a~d~~l-P~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (471)
+.++... ++ =.+.|+ +..-....++..+........+..-+.-..+++..+.-++.++--.+.-+|.|.. ++||-+
T Consensus 345 l~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l-~~yr~~ 421 (443)
T PRK13629 345 LILKFGYKGD-KTKVSL-GKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSL-AKYRGR 421 (443)
T ss_pred HHHHHHhhcc-ccccCH-HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHH-HHhCCC
Confidence 7753211 10 012232 2223334445555555555555444433333333332222333333334555553 336655
Q ss_pred CchhHHHHHHH
Q 038994 406 MKLPGLVIMCL 416 (471)
Q Consensus 406 ~~~~~~~~~~~ 416 (471)
.....+.+.++
T Consensus 422 ~~n~fv~~~Gl 432 (443)
T PRK13629 422 LDNVFVTVIGL 432 (443)
T ss_pred chhHHHHHHHH
Confidence 53344444443
No 49
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.80 E-value=9.1e-16 Score=151.51 Aligned_cols=288 Identities=18% Similarity=0.179 Sum_probs=226.3
Q ss_pred cccccccchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHh
Q 038994 30 IKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDG-GFVIWADRAF 107 (471)
Q Consensus 30 ~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~G-g~y~~~~~~~ 107 (471)
+.+++-+..+.+....++.+| |++.+|.+...+|-...+...++.+. ++....+++.|...+.|+.. +.++-+++.+
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~-~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWP-LTYLSLLLLLEALLSSPNGKASITSLVEDYL 82 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCcccHHHHHHHHh
Confidence 445566788889999999999 88999999998887666666666666 48889999999999999984 9999999999
Q ss_pred CChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-cCCC-hhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 038994 108 GPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHP-LESG-WPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSL 185 (471)
Q Consensus 108 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 185 (471)
||.++++.+..+.+.......++....++.++..++. .... .++.+..+++...+..+.+.|.+...|.+..+...++
T Consensus 83 G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v 162 (415)
T COG0814 83 GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKV 162 (415)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 9999999999999998888899999999999888775 2222 6777888888888888999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCccccCC--CCCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcc-hhHHHHHHHHHHHHHH
Q 038994 186 SPFIIMSLAAIPKIKPHRWFSSGQ--KGLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKT-FPVALLVAVIFTCVAY 262 (471)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~-ip~ai~~~~~~~~~~y 262 (471)
+.+++++....++.+++....... +.....+...++..+++|.+....+.+..|+|+++|+ ++|++..+..+..++|
T Consensus 163 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vly 242 (415)
T COG0814 163 IYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLY 242 (415)
T ss_pred HHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence 988888888877766554322211 1113344566777899999999999999999988777 9999999999999999
Q ss_pred HHHHHHHHhcccCCcc------cccccHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038994 263 LIPLFAVIGAVNVDQS------QWDSGFH-ATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLS 318 (471)
Q Consensus 263 ~l~~~~~~~~~~~~~~------~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 318 (471)
+...+......+.+.- ..++... .........+.......+...++..+|+.+...
T Consensus 243 i~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~l 305 (415)
T COG0814 243 ILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYL 305 (415)
T ss_pred HHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchh
Confidence 9999999998887631 1122223 333333445556666677777777777655553
No 50
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.67 E-value=5.9e-15 Score=143.58 Aligned_cols=398 Identities=15% Similarity=0.111 Sum_probs=265.6
Q ss_pred ccccccccchhHHHHHHHh-hccc--ccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCChHHHHHH
Q 038994 29 TIKSKKLTLIPLIFLIYFE-VAGG--PYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFP-GDGGFVIWAD 104 (471)
Q Consensus 29 ~~~~r~l~~~~~~~~~~~~-~iG~--~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p-~~Gg~y~~~~ 104 (471)
.+.+=++++|+.++.-.-- +-|- .+-++...+.+|-...++-..+... .++.++++..-++++-. ++||.|...+
T Consensus 24 ~~~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~-vt~it~lSa~~I~t~~~vk~Gg~yflis 102 (643)
T KOG2083|consen 24 TKGPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTV-VTLITVLSAIAIVTRGQVKSGGVYFLIS 102 (643)
T ss_pred cCCceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHH-HHHHHHHhHheeeecceeccCcEEEEEE
Confidence 3445578999988755432 2342 2333444455664333332233333 36667787777777654 6899999999
Q ss_pred HHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 038994 105 RAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVS 184 (471)
Q Consensus 105 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 184 (471)
|.+||.+|-..|-+|.+++...++.+...+++.+..++...+ .+..--++.+...+...+|..|.++..|.|.+...+.
T Consensus 103 ~slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s-~~~i~gi~~vt~~ill~i~~ag~~w~~k~q~~ll~il 181 (643)
T KOG2083|consen 103 RSLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES-KEMIDGIGSVTVLILLAINVAGVEWEAKLQIVLLLIL 181 (643)
T ss_pred ecccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc-HHHhcchhHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988886542 1222236666777888999999999999998877776
Q ss_pred HHHHHHHHHHhhcccc-C--C--Cccc------cCCCC-CCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHH
Q 038994 185 LSPFIIMSLAAIPKIK-P--H--RWFS------SGQKG-LKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALL 252 (471)
Q Consensus 185 ~~~~~~~~~~~~~~~~-~--~--~~~~------~~~~~-~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~ 252 (471)
++.+.-+.+..+...+ . + .+.. ..+.- ....|...+...+=+..|.=+-.+++++.|||++++|++..
T Consensus 182 ~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL 261 (643)
T KOG2083|consen 182 LIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGAL 261 (643)
T ss_pred HHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccchh
Confidence 6666655554443221 0 0 0100 00000 01122223333334678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCcccc------ccc--HHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 038994 253 VAVIFTCVAYLIPLFAVIGAVNVDQSQW------DSG--FHATAAEMI-AGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQ 323 (471)
Q Consensus 253 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~------~~~--p~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~ 323 (471)
.+....+.+|+.+..-.....-.+.... ++- -+.+..+.. .-......+..+...+...+..+.+.++.++
T Consensus 262 ~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsalsslVsap~V 341 (643)
T KOG2083|consen 262 LAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSALSSLVSAPKV 341 (643)
T ss_pred hhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHHHHHHhhhHH
Confidence 9999999999877655443222111111 111 122222211 1222334455666677778888999999999
Q ss_pred HHHHHhcCCCc--hhhhhccCCCCCcHHHHHHHHHHHHHhh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 038994 324 ILGMADLGFLP--KFFGLRSKKFNTPWVGILVSTLITLGVS-YMDFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKR 400 (471)
Q Consensus 324 l~~~a~d~~lP--~~~~~~~~r~~~P~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (471)
++++.+|+..| .++.|-..+.+.|+++.+++...+..+. ..+.+.+..+.+......|.+.....+..+...++..|
T Consensus 342 ~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~aSl~~s~~wR 421 (643)
T KOG2083|consen 342 LQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFHASLAISEGWR 421 (643)
T ss_pred HHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhhhhhccccccC
Confidence 99999999999 6778877778999999999999988776 45677777788888889998888887777766554433
Q ss_pred -CcccCCchhHHHHHHHHhHHHHHHHHHHhhHHH
Q 038994 401 -PYRVPMKLPGLVIMCLIPSGFLVVIMVVATKIV 433 (471)
Q Consensus 401 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (471)
+++... .++++...+.+...++...|-.
T Consensus 422 p~f~~yn-----~wVSllGalKOG~ImFli~w~a 450 (643)
T KOG2083|consen 422 PSFKFYN-----AWVSLLGALLCLAIMFLISWWA 450 (643)
T ss_pred chhhhHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344322 3445555555555555444433
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.62 E-value=8.3e-13 Score=127.22 Aligned_cols=282 Identities=16% Similarity=0.170 Sum_probs=218.7
Q ss_pred cccchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhH
Q 038994 34 KLTLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFG 112 (471)
Q Consensus 34 ~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 112 (471)
|+|..|...+.+..++| +....|......+. ...++.+++++ ..+..++.+..+.+++|+. +.+.+.++.+||+.|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~-~~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGL-IGLLLALLIYYLLKRFPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHH-HHHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHHH
Confidence 57888999999999988 67777777655322 23344455555 3666789999999999987 799999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHh-ccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH
Q 038994 113 SLMGSWKFLSGVINIAAFPVLCIDYLKKV-IHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIM 191 (471)
Q Consensus 113 ~~~g~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 191 (471)
...+..+.+.+....+......++.++.. +|. .|.+.....+..........|.+..+|.+.+.....++.++..
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~----TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i 153 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLLPE----TPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLI 153 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998899999999988776 443 6888888888889999999999999998887777777776666
Q ss_pred HHHhhccccCCCccccCCCCCCCchhHH---HHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 038994 192 SLAAIPKIKPHRWFSSGQKGLKKDWNLF---FNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFA 268 (471)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~ 268 (471)
........+.++..|.... ++.+. .....+.|.|.|....+...+||| |+..|....+....+++|.+....
T Consensus 154 ~~~~~~~~~~~~l~P~~~~----g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~-~~~~k~~~~~~~~~~~~~~~~~~~ 228 (320)
T PF03845_consen 154 LLLSIPNIDWDNLLPVLES----GIKPILKGSLVISFPFGGIEILLFLFPFVKDK-KKLKKSLLIAILISGLFLLFIIFI 228 (320)
T ss_pred HHHhcccCCHHHeeCcccC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777776544 33333 344567789999999999999997 557899999999999999999999
Q ss_pred HHhcccCCcccccccHHHHHHHHhhhH-H---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 038994 269 VIGAVNVDQSQWDSGFHATAAEMIAGK-W---LKIWLEVGAVLSAIGLFEAQLSSSAYQILGM 327 (471)
Q Consensus 269 ~~~~~~~~~~~~~~~p~~~~~~~~~~~-~---~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~ 327 (471)
..++.+++.......|...+.+..--+ . ...++...-..+.+......++.+++.+-.+
T Consensus 229 ~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 291 (320)
T PF03845_consen 229 TIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQL 291 (320)
T ss_pred HHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888988888877422 3 3333334444455555656666666666443
No 52
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.50 E-value=6.6e-11 Score=116.24 Aligned_cols=350 Identities=13% Similarity=0.111 Sum_probs=209.1
Q ss_pred ccccccccccchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCh-----HH
Q 038994 27 TTTIKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGG-----FV 100 (471)
Q Consensus 27 ~~~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg-----~y 100 (471)
.....+|..++++..+..++.++| +.+++|.++...|+..-+...++.+++ +..++....+.-+..|.-.| .-
T Consensus 30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~ii-t~YT~~LL~~~~~~~~~~~~~r~~~Y~ 108 (437)
T KOG1303|consen 30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAII-TLYTATLLSRCWEMHEAVPGKRRYRYP 108 (437)
T ss_pred CccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCCCccCCChH
Confidence 344557889999999999999999 789999999999986656666666664 77777778888888887777 67
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCC-----hhHHHHHHHHHHHHHHHhhccchhhHH
Q 038994 101 IWADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESG-----WPRSLAIMVSTCILSFLNFTGLTIVGY 175 (471)
Q Consensus 101 ~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~ 175 (471)
+.++++||++.-.++++...+........+....++-+..+++....+ ...+.+...++.+... -+...+....
T Consensus 109 dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s-~lp~~~~l~~ 187 (437)
T KOG1303|consen 109 DLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLS-QLPNFHSLSY 187 (437)
T ss_pred HHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHH-HCCCcchhHH
Confidence 788899998888888988888777777788888888887776543211 1222222222222111 1334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCcc-ccCCCCCCCch-hHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHH
Q 038994 176 AAVLLGLVSLSPFIIMSLAAIPKIKPHRWF-SSGQKGLKKDW-NLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLV 253 (471)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~ 253 (471)
++.+..+..+....+....+..+.-..+.. .......+... ...+....|+|.|.....+....+|+|+| .+|+...
T Consensus 188 ~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~li 266 (437)
T KOG1303|consen 188 LSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLI 266 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHH
Confidence 544444444333333333333332111111 00001001111 23444567899999999999999999977 9999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-C
Q 038994 254 AVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMI-AGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADL-G 331 (471)
Q Consensus 254 ~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d-~ 331 (471)
+..+++.+|+.....-+...+++..+ ++.... .+.+.....++.+.+..+++..-+. .-+++..++ -
T Consensus 267 s~~~~~~~y~~vai~GY~aFG~~~~~-------~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a----~pl~~~~E~~~ 335 (437)
T KOG1303|consen 267 SYIIVTFLYFPVAIIGYWAFGDSVPD-------NILLSLQPPTWLIALANILIVLHLIGSYQIYA----QPLFDVVEKLI 335 (437)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccch-------hhhhcccCchhHHHHHHHHHHHHHhhhhhhhh----cchHHHHHHHh
Confidence 99999999999988877766654221 122222 2444555555565666555543222 222332221 1
Q ss_pred CCc-hhhhh-ccCCCCCcHHHHHHHHHHHHHhhccCHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 038994 332 FLP-KFFGL-RSKKFNTPWVGILVSTLITLGVSYMDFESIVASANF--LYSLGMLLEFAAFIWL 391 (471)
Q Consensus 332 ~lP-~~~~~-~~~r~~~P~~a~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~ 391 (471)
..+ +-+.+ .+. .|.=.+...+....-....++.|..+.++... .....++++++..+..
T Consensus 336 ~~~~~~~~~~~~~-~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 336 GVKHPDFKKRSLV-LRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLI 398 (437)
T ss_pred ccCCccccccccc-eeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 11222 111 22223333333333333445667777666653 4566777777766665
No 53
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.47 E-value=1.7e-10 Score=111.76 Aligned_cols=288 Identities=13% Similarity=0.107 Sum_probs=183.9
Q ss_pred ccccccccchhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCC-------CC
Q 038994 29 TIKSKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAE--LSTAFPG-------DG 97 (471)
Q Consensus 29 ~~~~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~e--l~~~~p~-------~G 97 (471)
++.+++++.+++++.+++..+| .+-+...++..+||+++.|.|+.+.+ .. +..|+| |+.+|.+ .|
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~--Gm--atk~~E~~La~~yR~~~~~G~~~G 88 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALL--GM--ATKYAEVTLAQKYREKDEDGEYRG 88 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHH--HH--HHHHHHHHHHHHheEECCCCCEee
Confidence 4456689999999999999988 37788888889999999998887654 43 555566 5555553 48
Q ss_pred hHHHHHHHHhCChh-HHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHH
Q 038994 98 GFVIWADRAFGPFF-GSLMGSWKFLSGVIN-IAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGY 175 (471)
Q Consensus 98 g~y~~~~~~~g~~~-g~~~g~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 175 (471)
|...|.++.+|.++ +.+-+......+... ........++.++..++ ++.+..++++.++..++-+-|+|..++
T Consensus 89 GP~yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~-----i~~~~~gi~l~~l~~~vi~GGikrI~~ 163 (416)
T PF01235_consen 89 GPMYYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG-----IPPWITGIILAILVALVIFGGIKRIAK 163 (416)
T ss_pred cHHHHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc-----ccHHHHHHHHHHHHHHHHHcchhHHHH
Confidence 89999999999654 444443322332222 33444444555544443 567778888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-c--C--------CCccccCCCCCCCchhHHHH--H-------HHHH---hhhhhh
Q 038994 176 AAVLLGLVSLSPFIIMSLAAIPKI-K--P--------HRWFSSGQKGLKKDWNLFFN--T-------LFWN---LNFWDN 232 (471)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~-~--~--------~~~~~~~~~~~~~~~~~~~~--~-------~~~a---f~G~e~ 232 (471)
+...+..++.+..++.++..+... + | +.|++.... .+..+... . .+|+ =.|...
T Consensus 164 v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~aa~---GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~ 240 (416)
T PF01235_consen 164 VSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKAAF---GGFAGSTIMMAIRQGVARGLFSNEAGLGSAP 240 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCccch---hhHHHHHHHHHHHHhhhhhhccCCCCCChhH
Confidence 998888877776666655544321 1 1 122222211 12222111 1 1121 126677
Q ss_pred hhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccc-ccccH-HHHHHHHhhhHHHHHHHHHHHHHHHH
Q 038994 233 VSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFAVIGAVNVDQSQ-WDSGF-HATAAEMIAGKWLKIWLEVGAVLSAI 310 (471)
Q Consensus 233 ~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
.+|-+.|+++|.|+--.+++.-.+-+.++-.+..++++..-.++... .+... ....++...+++...++.++.++-.+
T Consensus 241 ~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFaf 320 (416)
T PF01235_consen 241 IAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAF 320 (416)
T ss_pred HHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 77888899999887666665544444444455555544332222111 12222 34555555677788888999999999
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 038994 311 GLFEAQLSSSAYQILGMA 328 (471)
Q Consensus 311 ~s~~~~~~~~sR~l~~~a 328 (471)
++..++.+..-+.+.-+.
T Consensus 321 TTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 321 TTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999998888876654
No 54
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.44 E-value=2.4e-10 Score=110.55 Aligned_cols=242 Identities=17% Similarity=0.187 Sum_probs=165.4
Q ss_pred cccccchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCCCC-----------
Q 038994 32 SKKLTLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIW---SIPEALITAELSTAFPGD----------- 96 (471)
Q Consensus 32 ~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~---~~~~a~~~~el~~~~p~~----------- 96 (471)
++..+..+.+.--+-.++| |.+++|.+...+|...-.+..++.+++. .....-|--+++++..++
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 3457778888877777889 7899999999988765454444444431 222344556777775322
Q ss_pred -ChHHHHHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-cCCChhHHHHHHHHHHHHHHHhh-ccchhh
Q 038994 97 -GGFVIWADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHP-LESGWPRSLAIMVSTCILSFLNF-TGLTIV 173 (471)
Q Consensus 97 -Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 173 (471)
-+.|.| .|.+||...+++-....+.+...+.++....++-+++..+. ....+......++.+.....+|+ +.+|..
T Consensus 124 ~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~L 202 (449)
T KOG1304|consen 124 MEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKIL 202 (449)
T ss_pred HcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 122234 66788888999988888888888888888888888777763 22344444444444444444444 567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCCCCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchh---HH
Q 038994 174 GYAAVLLGLVSLSPFIIMSLAAIPKIKPHRWFSSGQKGLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFP---VA 250 (471)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip---~a 250 (471)
.-++.+.-++.++.+++.....+.... .......-....+|.-++.+++|+|-|...+-.+=+|||+| ++.| +.
T Consensus 203 sp~Sl~Anv~~~~g~~ii~~y~~~~~~--~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P-~~F~g~~gV 279 (449)
T KOG1304|consen 203 SPFSLFANVFILVGLAIIMYYLVQDLP--PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP-QKFPGPFGV 279 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccC--CccccccccchhhhHHHHHHHHHHhccceEEEehhhcccCh-hhcCCccch
Confidence 777766666666665555554443322 11111111124577788889999999999999999999999 5588 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCc
Q 038994 251 LLVAVIFTCVAYLIPLFAVIGAVNVDQ 277 (471)
Q Consensus 251 i~~~~~~~~~~y~l~~~~~~~~~~~~~ 277 (471)
+-.++.++.++|....+.-+...++|.
T Consensus 280 Ln~~M~~V~~ly~~~Gf~GYl~fG~~v 306 (449)
T KOG1304|consen 280 LNLGMGIVTLLYIFLGFFGYLAFGDDV 306 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999988887777664
No 55
>PTZ00206 amino acid transporter; Provisional
Probab=99.39 E-value=9e-10 Score=111.19 Aligned_cols=237 Identities=12% Similarity=0.111 Sum_probs=146.2
Q ss_pred hhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHHHHH
Q 038994 38 IPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGSLMG 116 (471)
Q Consensus 38 ~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g 116 (471)
.+..+-...+++| |++++|.+...+|....++..++.+.+ +........+.+.+. +.-+..+-+++.+|++..+++.
T Consensus 63 ~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~l-s~ys~~lL~~~~~~~-~~~sY~~la~~~~G~~g~~~v~ 140 (467)
T PTZ00206 63 AASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAM-TIFSIYALGVAADKT-NIRTYEGVARVLLGPWGSYYVA 140 (467)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHhccC-CCCCHHHHHHHHhCHHHHHHHH
Confidence 5556666677789 899999999998886556555665554 444555556655553 3446677777889999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhccccCC-Ch------hHHHHHHH-HHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 038994 117 SWKFLSGVINIAAFPVLCIDYLKKVIHPLES-GW------PRSLAIMV-STCILSFLNFTGLTIVGYAAVLLGLVSLSPF 188 (471)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 188 (471)
....+.....+.++....++.+...++.... .+ .+..+.+. +.+..-+.-.+.++..++++.+.....+...
T Consensus 141 ~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~v 220 (467)
T PTZ00206 141 ATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLV 220 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHH
Confidence 9998888888888888888888777653211 11 01111111 1122222334556666666544332222111
Q ss_pred HHHHHHhhccccCCCcccc-----CCCC-----CCCchhHHHHHHHHHhhhhhhhhhhhhhccCCC-cchhHHHHHHHHH
Q 038994 189 IIMSLAAIPKIKPHRWFSS-----GQKG-----LKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQ-KTFPVALLVAVIF 257 (471)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~-k~ip~ai~~~~~~ 257 (471)
+...+....+..++...+. .... ........+....|+|.+.......-+|+|||+ |+..|....++.+
T Consensus 221 i~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i 300 (467)
T PTZ00206 221 IVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGM 300 (467)
T ss_pred hhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHH
Confidence 1111111112112111110 0000 011233445667899999999999999999964 6788999999999
Q ss_pred HHHHHHHHHHHHHhcccCC
Q 038994 258 TCVAYLIPLFAVIGAVNVD 276 (471)
Q Consensus 258 ~~~~y~l~~~~~~~~~~~~ 276 (471)
+.++|.+..+.-+...+.+
T Consensus 301 ~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 301 CFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHhhhhccccc
Confidence 9999999998888766654
No 56
>PLN03074 auxin influx permease; Provisional
Probab=99.34 E-value=2.3e-09 Score=107.88 Aligned_cols=232 Identities=12% Similarity=0.064 Sum_probs=122.7
Q ss_pred cchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCCChH--------HHH
Q 038994 36 TLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALI----TAELSTAFPGDGGF--------VIW 102 (471)
Q Consensus 36 ~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~----~~el~~~~p~~Gg~--------y~~ 102 (471)
+.++..+-.....+| |++++|.+...+|....++..++.+++ +..++.. +-|..++.|+.+-. +.-
T Consensus 47 s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l-~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~ 125 (473)
T PLN03074 47 SVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLL-GSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEV 125 (473)
T ss_pred hHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHH
Confidence 344444447777788 899999999999987666666666654 3334443 45677777764421 223
Q ss_pred HHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 038994 103 ADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGL 182 (471)
Q Consensus 103 ~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 182 (471)
.++.+||.++........+........+....++-+....+..+......+...+...+.. .+..|....++.+...
T Consensus 126 ~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~---i~sl~~l~~~S~ig~~ 202 (473)
T PLN03074 126 LDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVF---IPSFHNYRIWSFLGLL 202 (473)
T ss_pred HHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeEEeehHHHHHHHHH---ccCHHHHHHHHHHHHH
Confidence 3446899887766444433333323233333333332222221111111222222222222 2334444444332222
Q ss_pred HHHHHHHHHHHHhhccccCCCccccCCCCCCCchhHHHH---HHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 038994 183 VSLSPFIIMSLAAIPKIKPHRWFSSGQKGLKKDWNLFFN---TLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTC 259 (471)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~ 259 (471)
..+.......+..+...+.+.+.... ..++..++. ..+|+|.|.-....+-.||||| ++.++....+...+.
T Consensus 203 ~tl~~av~i~i~~i~~~~~~~~~~~~----~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P-~~F~~~~~l~~~~v~ 277 (473)
T PLN03074 203 MTTYTAWYMTIAALSHGQVEGVKHSG----PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLAATLYVL 277 (473)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCC----chhHHHHHHHHHHHHHHhcccccHHHHHHhccCh-hcccchHHHHHHHHH
Confidence 21211111111122222222221111 223333333 3689999999999999999999 559998888888888
Q ss_pred HHHHHHHHHHHhcccCC
Q 038994 260 VAYLIPLFAVIGAVNVD 276 (471)
Q Consensus 260 ~~y~l~~~~~~~~~~~~ 276 (471)
..|+...+..+...+++
T Consensus 278 ~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 278 TLTLPSAAAVYWAFGDE 294 (473)
T ss_pred HHHHHHHHeeeeeechh
Confidence 88888766665555543
No 57
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.34 E-value=1e-08 Score=94.20 Aligned_cols=266 Identities=11% Similarity=0.107 Sum_probs=175.4
Q ss_pred HHHHHHhhcccccCChhHHHh-hCh--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHHHHHH
Q 038994 41 IFLIYFEVAGGPYGEEPAVKA-AGP--LYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGSLMGS 117 (471)
Q Consensus 41 ~~~~~~~~iG~~~~~~~~~~~-~G~--~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~ 117 (471)
.+..+++++|+.|..++.+.. .|+ ....++.++.++++.+ .+....|+++++. +...-++.++.+||+++-+--.
T Consensus 9 ~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf~~-~g~vim~ig~~f~-a~~y~~~~~~v~~~~~~ki~d~ 86 (349)
T COG3949 9 AFAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLFTL-SGAVIMTIGKKFN-ATSYREILKYVSGPKFAKIIDI 86 (349)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhc-ccchHHHHHHHhhHHHHHHHHH
Confidence 345566888999999988766 232 1467777888876444 6777899999995 6688899999999999888776
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHHHHHHHHhh
Q 038994 118 WKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTG-LTIVGYAAVLLGLVSLSPFIIMSLAAI 196 (471)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (471)
...+.-...+.......+..+.+.++ .|.|+.++++..+..++..++ .+..-+++.+.+-+.++.+........
T Consensus 87 ~iif~lf~~~vVM~AGags~~~e~~~-----lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~~v~~~~~ 161 (349)
T COG3949 87 IIIFFLFSTAVVMLAGAGSLLEEMFG-----LPYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIIILVLVTLSFQ 161 (349)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHhC-----ccHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHHHHHHHHH
Confidence 65554444333333334446777765 577887777777777777777 776667776666555554333332222
Q ss_pred ccccCCCccccCCCCCCCchhHHHH--HHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 038994 197 PKIKPHRWFSSGQKGLKKDWNLFFN--TLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFAVIGAVN 274 (471)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~ 274 (471)
.....+.++..... ..+|..... ...--...+.....+++|+|++ |+..++-..+-++.+++..+.........|
T Consensus 162 f~~~~~~a~~~~~~--~~~W~~~~~~Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~~~ 238 (349)
T COG3949 162 FTNLGNAAQIVLTK--QGNWKASAVGYGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLFLINLSLIALYD 238 (349)
T ss_pred HhhccchhhhcCCc--CCChHHHHHhhhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHHHHHHHHHHHHhhcc
Confidence 22222222222222 234543322 1222233566778888999996 778888888888888888877777766544
Q ss_pred CCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038994 275 VDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSS 319 (471)
Q Consensus 275 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 319 (471)
+..+.|-|..++++... +.....+.+.......++..+.+++
T Consensus 239 --~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 239 --KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred --hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788888887775 6567777777777777777666654
No 58
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.30 E-value=1.4e-08 Score=97.55 Aligned_cols=287 Identities=14% Similarity=0.137 Sum_probs=191.8
Q ss_pred cccccccchhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCC-------CCh
Q 038994 30 IKSKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAE--LSTAFPG-------DGG 98 (471)
Q Consensus 30 ~~~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~e--l~~~~p~-------~Gg 98 (471)
..++.++.+++++.+.++.+| .+-+...++..+||.++.|.|+.+.+ .. +-.|+| |+..|++ .||
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~--Gm--at~f~E~~La~~Yr~kd~~G~~~GG 133 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALF--GM--ATKFAESTLAQKYRVKDKDGEYRGG 133 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHH--HH--HHHHHHHHHHhheeEeCCCCCCcCC
Confidence 457789999999999999988 36677778888999999998888654 44 555566 7777762 488
Q ss_pred HHHHHHHHhCC-hhHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHH
Q 038994 99 FVIWADRAFGP-FFGSLMGSWKFLSGV-INIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYA 176 (471)
Q Consensus 99 ~y~~~~~~~g~-~~g~~~g~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 176 (471)
.-.|.++.+|. +.|..-+....+.+- ......+...++.+++.++ ++.+...+++.++...+-+-|+|..+++
T Consensus 134 P~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~-----~~~~~~gi~la~l~~~VI~GGi~rIa~v 208 (452)
T COG1115 134 PAYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG-----IPPLVTGIVLALLVALVIFGGIKRIAKV 208 (452)
T ss_pred hHHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHcchHHHHHH
Confidence 99999999994 457766655555554 4677778888888887776 5788888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-ccc--C--------CCccccCCCCCCCchhHH-----HHH----HHHH---hhhhhhh
Q 038994 177 AVLLGLVSLSPFIIMSLAAIP-KIK--P--------HRWFSSGQKGLKKDWNLF-----FNT----LFWN---LNFWDNV 233 (471)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~-~~~--~--------~~~~~~~~~~~~~~~~~~-----~~~----~~~a---f~G~e~~ 233 (471)
.......+.+..++.++..+. +.+ | +.|.+..-. .+..+. +.. ..|+ =.|....
T Consensus 209 ~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~---GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~ 285 (452)
T COG1115 209 SSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAA---GGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPI 285 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhh---hhhhhHHHHHHHHHHHHHHhhcccccCCcchh
Confidence 887777666655554443332 111 1 122221111 122211 111 1121 1255566
Q ss_pred hhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccc-ccccH-HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 038994 234 STLAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFAVIGAVNVDQSQ-WDSGF-HATAAEMIAGKWLKIWLEVGAVLSAIG 311 (471)
Q Consensus 234 ~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (471)
++.+.+++||.|+--..+....+-..++.....+.++..-.++... .+... ....+++..+++...++.+...+-.++
T Consensus 286 aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafT 365 (452)
T COG1115 286 AAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLFAFT 365 (452)
T ss_pred HHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 7777888899886655554444434444455555555443333222 12333 345566667888999999999999999
Q ss_pred HHHHHHhhhHHHHHHHH
Q 038994 312 LFEAQLSSSAYQILGMA 328 (471)
Q Consensus 312 s~~~~~~~~sR~l~~~a 328 (471)
+.+++++..-|.+.-+.
T Consensus 366 TIlg~yyyge~~~~fl~ 382 (452)
T COG1115 366 TILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999888886654
No 59
>PRK11375 allantoin permease; Provisional
Probab=99.30 E-value=3.5e-08 Score=99.85 Aligned_cols=319 Identities=11% Similarity=0.071 Sum_probs=152.6
Q ss_pred CCCccccccccccchhHHHHHHHhhcc-cccCChh-HHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-hH
Q 038994 24 TVATTTIKSKKLTLIPLIFLIYFEVAG-GPYGEEP-AVKA-AGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDG-GF 99 (471)
Q Consensus 24 ~~~~~~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~-~~~~-~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~G-g~ 99 (471)
+..+.++.+|+-++++.+.+=++.... +.+...+ .+.. -+....+++.+++.++ .+....-.+..=++.| +.
T Consensus 16 dl~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i----~~~~~~l~g~~G~~~Gl~~ 91 (484)
T PRK11375 16 DLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFF----IAAVMVLNGAAGSKYGVPF 91 (484)
T ss_pred CCCcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHH----HHHHHHHhcccccccCCCh
Confidence 344556667888999888877766533 1221112 2211 1223344444444443 2222233333333332 46
Q ss_pred HHHHHHHhCChhHHHHHHHHH-HHHhhHHHHHHHHHHHHHH----HhccccC----------CChhHHHHHHHHHHHHHH
Q 038994 100 VIWADRAFGPFFGSLMGSWKF-LSGVINIAAFPVLCIDYLK----KVIHPLE----------SGWPRSLAIMVSTCILSF 164 (471)
Q Consensus 100 y~~~~~~~g~~~g~~~g~~~~-~~~~~~~a~~~~~~~~~~~----~~~~~~~----------~~~~~~~~~~~~~~~~~~ 164 (471)
....|..||.+.+.+.+.+.. +..+...+.+....++.+. ..+|... .+.+..+..+++.++.+.
T Consensus 92 ~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~ 171 (484)
T PRK11375 92 AMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVG 171 (484)
T ss_pred hHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHH
Confidence 678888999887777776663 3444445555555555544 3333211 112234444455566667
Q ss_pred HhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCC---CCCCchhHHHH---HHHHHhh-hhhhhhhhh
Q 038994 165 LNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKPHRWFSSGQK---GLKKDWNLFFN---TLFWNLN-FWDNVSTLA 237 (471)
Q Consensus 165 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~af~-G~e~~~~~~ 237 (471)
+.++|.|...+++.+...+.++.++...+..+...+.+......++ ........+.. ..+=.+. +.-..+.++
T Consensus 172 ~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~t 251 (484)
T PRK11375 172 IGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFT 251 (484)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchh
Confidence 7788999999988877777665555544444433322211111111 00111111211 1111222 333466777
Q ss_pred hhccCCCcchhHHHHHHHHHHHHHHHHHHHHHH-hcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-H
Q 038994 238 GEVDRPQKTFPVALLVAVIFTCVAYLIPLFAVI-GAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFE-A 315 (471)
Q Consensus 238 ~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~ 315 (471)
+..|++ |+.-++..++..+...+......... +.... ......+|...+ .+........+..+..+++..++.. .
T Consensus 252 Ry~k~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~-~g~~~~dp~~i~-~~~~~~~~~~~a~l~~v~a~~~tN~~~ 328 (484)
T PRK11375 252 QNAHSF-RAQALGQTLGLVVAYILFAVASVCIIAGASIH-YGADTWNVLDIV-QRWDSLFASFFAVLVILMTTISTNATG 328 (484)
T ss_pred cccCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCcCCHHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 777886 44556666666655544332222221 11100 001123443333 3333333344444455566666543 4
Q ss_pred HHhhhHHHHHHHHhcCCCchhhhhccCCCCCcHHHHHHHHHHHHHhh
Q 038994 316 QLSSSAYQILGMADLGFLPKFFGLRSKKFNTPWVGILVSTLITLGVS 362 (471)
Q Consensus 316 ~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~ 362 (471)
..++.+ +.-.+.+||.. |+| ++.++..+++.++.
T Consensus 329 N~ys~~-----~~l~~l~pk~i---~~~-----~~~~i~~iig~~~~ 362 (484)
T PRK11375 329 NIIPAG-----YQIAALAPTKL---TYK-----NGVLIASIISLLIC 362 (484)
T ss_pred hcccHH-----HHHHHhCcCcc---chh-----hHHHHHHHHHHHhc
Confidence 555555 33345667432 332 24555555555444
No 60
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.30 E-value=1e-08 Score=100.23 Aligned_cols=283 Identities=14% Similarity=0.149 Sum_probs=172.9
Q ss_pred cccccchhHHHHHHHhhcc-c-ccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCC---CC----ChHH
Q 038994 32 SKKLTLIPLIFLIYFEVAG-G-PYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAE--LSTAFP---GD----GGFV 100 (471)
Q Consensus 32 ~r~l~~~~~~~~~~~~~iG-~-~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~e--l~~~~p---~~----Gg~y 100 (471)
+++++.+++++...++.+| | +.+.+.++..+||.++.|.|+.+.+ .. +..|+| ++.++. +. ||..
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~all--Gm--~~~~~e~~L~~~yr~~~~~g~~~GGP~ 119 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFI--GM--ATKFVESTLAQKYRERDADGVFRGGPM 119 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHH--HH--HHHHHHHHHHHHeeeeCCCCCEecChH
Confidence 3569999999999999999 4 8889888888999988887776544 33 333444 444444 22 3444
Q ss_pred HHHHHHhC-ChhHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 038994 101 IWADRAFG-PFFGSLMGSWKFLSG-VINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAV 178 (471)
Q Consensus 101 ~~~~~~~g-~~~g~~~g~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 178 (471)
.|.++.++ |+.|.+-+.. .+.+ ...........++.++..++ .+.+...+++.++...+-.-|+|..+++..
T Consensus 120 yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~-----~~~~v~~i~l~~l~~~vi~GGik~Ia~v~~ 193 (425)
T TIGR00835 120 YYIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN-----VPKLVTGIVLTVLTALIIFGGLKRIAKISS 193 (425)
T ss_pred HHHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 78888776 6667666555 3333 33445566666666664442 467777777777777777779999999998
Q ss_pred HHHHHHHHHHHHHHHHhhc-ccc----------CCCccccCCCCCCCchhHHH--HH-------HHHH---hhhhhhhhh
Q 038994 179 LLGLVSLSPFIIMSLAAIP-KIK----------PHRWFSSGQKGLKKDWNLFF--NT-------LFWN---LNFWDNVST 235 (471)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~--~~-------~~~a---f~G~e~~~~ 235 (471)
....++....++.++.... +.+ .+.|.+..-. .+..+.. .. ..|+ =.|....+|
T Consensus 194 ~lvP~m~~~Y~~~~l~ii~~n~~~lp~~~~~If~~AF~~~a~~---GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~ 270 (425)
T TIGR00835 194 VVVPFMALLYVIMALYIIIMNIEQLPAVISLIFRSAFGGDAAA---GGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAA 270 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCchhhH---hHHHHHHHHHHHHHhhHHHHhccccccCcHHHHH
Confidence 8777776665444433222 111 1122221111 1222211 11 1121 126667777
Q ss_pred hhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcccCCcc-cccccHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 038994 236 LAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFAVIGAVNVDQS-QWDSGFH-ATAAEMIAGKWLKIWLEVGAVLSAIGLF 313 (471)
Q Consensus 236 ~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~-~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 313 (471)
.+.|+++|.|+--.++..-.+-+.++-.+..++++..-.+++. ..+...+ ...++...+++...++.+..++-.+++.
T Consensus 271 a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~lFaftTi 350 (425)
T TIGR00835 271 AAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALFLFAFSTI 350 (425)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 7888999988776666554443444444555544432222211 1112222 3344554566777888888999999999
Q ss_pred HHHHhhhHHHHHHH
Q 038994 314 EAQLSSSAYQILGM 327 (471)
Q Consensus 314 ~~~~~~~sR~l~~~ 327 (471)
.++.+..-+.+.-+
T Consensus 351 i~~~yyge~~~~yl 364 (425)
T TIGR00835 351 IGWYYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHHHHh
Confidence 99998888877665
No 61
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.03 E-value=8e-12 Score=125.04 Aligned_cols=355 Identities=17% Similarity=0.142 Sum_probs=197.2
Q ss_pred ccccchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCChHHHHHHHHhC
Q 038994 33 KKLTLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFP---GDGGFVIWADRAFG 108 (471)
Q Consensus 33 r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p---~~Gg~y~~~~~~~g 108 (471)
|+-|.++..+..+.+++| |.+++|.+....|....++..++.+.+ ...+...+.|.....| +.-..-+-+++.+|
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~-s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALL-SYYTMYLLVRAANAMPNGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHhhhhhhcccccccccccccccccccccccc
Confidence 466889999999999999 889999999998876555555555553 6666777788877765 33344445678899
Q ss_pred ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCC--ChhHHHHHHHHHHHHHHHhh-ccchhhHHHHHHHHHHHH
Q 038994 109 PFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLES--GWPRSLAIMVSTCILSFLNF-TGLTIVGYAAVLLGLVSL 185 (471)
Q Consensus 109 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~ 185 (471)
|+.+++...+..+........+....++.+....+...+ ......+.++...+...+.. +..+.....+.......+
T Consensus 80 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~ 159 (409)
T PF01490_consen 80 PKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIF 159 (409)
T ss_pred ccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhccc
Confidence 999999888887777766666666677777666654221 12222222222222222222 223333333322221111
Q ss_pred HHHHHHHHHhhcc--ccCCCccccCC-C-CCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCc--chhHHHHHHHHHHH
Q 038994 186 SPFIIMSLAAIPK--IKPHRWFSSGQ-K-GLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQK--TFPVALLVAVIFTC 259 (471)
Q Consensus 186 ~~~~~~~~~~~~~--~~~~~~~~~~~-~-~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k--~ip~ai~~~~~~~~ 259 (471)
..+.+........ .++.+...... . ....++...++...|+|.+........+|+|||+| +..|+...+...++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~ 239 (409)
T PF01490_consen 160 YFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICF 239 (409)
T ss_pred eeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhh
Confidence 1001111111111 11111111111 1 11234455667788999999999999999999865 45699999999999
Q ss_pred HHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC-----CC
Q 038994 260 VAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGK-WLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLG-----FL 333 (471)
Q Consensus 260 ~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~-----~l 333 (471)
++|.+..+..+...+++..+ .+...+... ....+..++..+..+.+..-......+.+...-++. .-
T Consensus 240 ~~y~~~g~~gy~~fg~~~~~-------~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~ 312 (409)
T PF01490_consen 240 IIYLLFGIFGYLAFGDSVQG-------NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDS 312 (409)
T ss_pred HHhhhhhhcccceeeeeecc-------hhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccc
Confidence 99999988877666543211 122222211 233333444444444444444444444554443321 11
Q ss_pred chhhhhccCCCCCcHHHHHHHHHHHHHhhccCHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhCC
Q 038994 334 PKFFGLRSKKFNTPWVGILVSTLITLGVSYMDFESIVASANF--LYSLGMLLEFAAFIWLRMKKP 396 (471)
Q Consensus 334 P~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 396 (471)
++. .+.++..+.-.+..+......+.....++..+.++.+. ...+.|+++.+..++.+++++
T Consensus 313 ~~~-~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~ 376 (409)
T PF01490_consen 313 PKN-TPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKR 376 (409)
T ss_pred ccc-ccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccc
Confidence 100 11111111222222222222222334677777776653 456788888888888766654
No 62
>PRK11017 codB cytosine permease; Provisional
Probab=99.00 E-value=1.7e-05 Score=78.78 Aligned_cols=164 Identities=9% Similarity=-0.084 Sum_probs=90.2
Q ss_pred HHHHhhcCCCCChHHHHHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHH
Q 038994 86 TAELSTAFPGDGGFVIWADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFL 165 (471)
Q Consensus 86 ~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (471)
.+..+.++-. ......|..||.+.+.+.+....+..+...+.+....+..+...++. +.....+++.++....
T Consensus 62 ~~~~G~k~G~--~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~-----~~~~~~~i~~~l~~~~ 134 (404)
T PRK11017 62 LGYIGAKTGL--STHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL-----DINLLIVLSGLLMTVT 134 (404)
T ss_pred HHHHHhccCc--CHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHH
Confidence 3444444433 36667888899998888888777766666666666666665555442 1222333445556667
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc-CCCccccCCCCCCCchhHHHHHHH-HHhhhhhhhhhhhhhccCC
Q 038994 166 NFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIK-PHRWFSSGQKGLKKDWNLFFNTLF-WNLNFWDNVSTLAGEVDRP 243 (471)
Q Consensus 166 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~af~G~e~~~~~~~E~k~p 243 (471)
...|.|...+++.+......+..+...+..+.+.+ .+......+.+ ...+...+...+ +...+.-..+.++...|++
T Consensus 135 ~~~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~ 213 (404)
T PRK11017 135 AYFGISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAE-PLDFSAALTLVVGSFISGGTLTADFVRFGRSA 213 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCC-cccHHHHHHHHHHHHHHhHhcCCChHhhccCc
Confidence 77888888888887776665554444433333222 11111111111 223333333221 1223445677788888886
Q ss_pred CcchhHHHHHHHHHH
Q 038994 244 QKTFPVALLVAVIFT 258 (471)
Q Consensus 244 ~k~ip~ai~~~~~~~ 258 (471)
++ .-.+...+..+.
T Consensus 214 ~~-~~~~~~lg~~i~ 227 (404)
T PRK11017 214 KI-AVLATMVAFFLG 227 (404)
T ss_pred cc-eeehhHHHHHHH
Confidence 44 335555555443
No 63
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.99 E-value=5.4e-06 Score=81.13 Aligned_cols=151 Identities=9% Similarity=-0.011 Sum_probs=91.2
Q ss_pred HHHHhhcCCCCChHHHHHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHH
Q 038994 86 TAELSTAFPGDGGFVIWADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFL 165 (471)
Q Consensus 86 ~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (471)
.++++.+...+ ...-.|..||.+-+.+...+.++.+.-..+.+...+++..... +..+.+...++..++.++.
T Consensus 72 ~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-----~~~~~~~~ili~g~l~~l~ 144 (442)
T COG1457 72 FSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-----TGLPVWAGILIIGVLMTLV 144 (442)
T ss_pred HHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-----CCCcHHHHHHHHHHHHHHH
Confidence 56666665544 4555667899999988888888887777777777666652222 2346666666777788888
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc-CCCccccCCCCCCCchhHHHHHHHHHhhh-hhhhhhhhhhccCC
Q 038994 166 NFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIK-PHRWFSSGQKGLKKDWNLFFNTLFWNLNF-WDNVSTLAGEVDRP 243 (471)
Q Consensus 166 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~af~G-~e~~~~~~~E~k~p 243 (471)
.++|.|...+++.+.....+...+..........+ .+......+. ...++...+..++=.+.. --.++.++.-.|+|
T Consensus 145 ~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~-~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~ 223 (442)
T COG1457 145 TIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPT-SPLSFLSALSLVIGSFASWGPYAADYSRYAPSP 223 (442)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCC-cchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCC
Confidence 89999999999998887776655555444333122 2211111111 122344444333222333 33466667777776
Q ss_pred C
Q 038994 244 Q 244 (471)
Q Consensus 244 ~ 244 (471)
+
T Consensus 224 t 224 (442)
T COG1457 224 T 224 (442)
T ss_pred c
Confidence 4
No 64
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.94 E-value=3.1e-05 Score=79.07 Aligned_cols=283 Identities=11% Similarity=0.024 Sum_probs=146.2
Q ss_pred cccccccchhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 038994 30 IKSKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFM--IFPFIWSIPEALITAELSTAFPGDGGFVIWADR 105 (471)
Q Consensus 30 ~~~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~--i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 105 (471)
.-.|++++|-..+...++..+ ..++.++.....|..+...+.. ....+.....+.-+.++.++.. .-...+|.++
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~T~~e~l~~ 116 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN-AVTLNDMLRA 116 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHH
Confidence 346888988877777777666 3577777666666533222111 1111111123444566666664 4578999999
Q ss_pred HhCCh-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 038994 106 AFGPF-FGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVS 184 (471)
Q Consensus 106 ~~g~~-~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 184 (471)
.||++ .....+....+......+......+..++..++. +.+...+ +...+......+-|.|.......+-.++.
T Consensus 117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi--~~~~~ii--i~~~iv~iYt~~GGl~av~~TD~iQ~~i~ 192 (483)
T PRK09442 117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI--SYETGLL--IFGITVALYTAFGGFRAVVLTDALQGIVM 192 (483)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHH--HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99965 4666666666555556677777777777777652 1111111 12223344555567777666554444443
Q ss_pred HHHHHHHHHHhhcc-------------ccCCCccccCCCCCCCchhHHHHH---HHHHhhhhhhhhhhhhhccCCCcchh
Q 038994 185 LSPFIIMSLAAIPK-------------IKPHRWFSSGQKGLKKDWNLFFNT---LFWNLNFWDNVSTLAGEVDRPQKTFP 248 (471)
Q Consensus 185 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~af~G~e~~~~~~~E~k~p~k~ip 248 (471)
++..++..+..... .+++.+.+.+.++ ..++...... ..+...+.....+-.=..||+ |+..
T Consensus 193 ~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~-~~a~ 270 (483)
T PRK09442 193 LVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADD-ILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKDS-KALH 270 (483)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCc-cccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCH-HHHH
Confidence 33333322222111 1111111211111 1122221111 111122332233333336775 7788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 038994 249 VALLVAVIFTCVAYLIPLFAVI---GAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSA 321 (471)
Q Consensus 249 ~ai~~~~~~~~~~y~l~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s 321 (471)
|+..++.+....+++.....-. ...|+ ..+.+..+..+..+..++++..++.+..+.+..++..+.+.+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~--~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~l~~~s 344 (483)
T PRK09442 271 RGIIIGTIVVGFLMFGMHLAGALGRAVLPD--LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQLLQSS 344 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887766655554433321 12232 22345556666777777877777777767777766666665443
No 65
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.83 E-value=0.00024 Score=72.45 Aligned_cols=281 Identities=12% Similarity=0.050 Sum_probs=147.1
Q ss_pred cccccccchhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 038994 30 IKSKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFM--IFPFIWSIPEALITAELSTAFPGDGGFVIWADR 105 (471)
Q Consensus 30 ~~~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~--i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 105 (471)
.-.|+++++.......++.+| ...+.++.....|..+..+.+. ..+.+.....+.-+.+..++. +.-...+|.++
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~ 115 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKA 115 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHH
Confidence 346889999988888888777 3577777776666533222111 111111111233355555655 34589999999
Q ss_pred HhCCh-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHH-HHHHHHHHhhccchhhHHHHHHHHHH
Q 038994 106 AFGPF-FGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMV-STCILSFLNFTGLTIVGYAAVLLGLV 183 (471)
Q Consensus 106 ~~g~~-~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~ 183 (471)
.+|++ ...+.+....+.............+..++..++. +.+...++ ..+.......-|.|.......+-..+
T Consensus 116 Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi-----~~~~~iii~~~iv~iYt~~GG~~av~~td~iQ~~v 190 (471)
T TIGR02119 116 RYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL-----SYLTALFIFSSSVLIYTTFGGFRAVALTDAIQGIV 190 (471)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99955 4666666555555555556666677777766652 22222222 22344455556778777665544444
Q ss_pred HHHHHHHHHHHhhccc-c------------CCCccccCCCCCCCc-hhHHHHHHHHH-----hhhhhhhhhhhhhccCCC
Q 038994 184 SLSPFIIMSLAAIPKI-K------------PHRWFSSGQKGLKKD-WNLFFNTLFWN-----LNFWDNVSTLAGEVDRPQ 244 (471)
Q Consensus 184 ~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~-~~~~~~~~~~a-----f~G~e~~~~~~~E~k~p~ 244 (471)
.++..++.....+.+. + ++.+.+... .+ +.......++. ..+.+...+-.-..||+
T Consensus 191 ~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~~- 265 (471)
T TIGR02119 191 MFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGG----DGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKDS- 265 (471)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCC----CcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCCH-
Confidence 4433333322222211 1 111111111 11 11111111121 22222233344556775
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhc--ccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 038994 245 KTFPVALLVAVIFTCVAYLIPLFAVIGA--VNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAY 322 (471)
Q Consensus 245 k~ip~ai~~~~~~~~~~y~l~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR 322 (471)
|+..|+..++.+....++....+.-... ..+ +..++|..+..+..+..+++...++.+..+.+..++..+.+++.+-
T Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p-~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l~~~ss 344 (471)
T TIGR02119 266 KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIP-DLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSLLLQSSS 344 (471)
T ss_pred HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999888776666555443332111 111 2233455566666677777777777676677777776666655543
No 66
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.65 E-value=0.00027 Score=69.54 Aligned_cols=309 Identities=13% Similarity=0.083 Sum_probs=171.8
Q ss_pred Hhhccc-ccCChhHHHh-hC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHHHHHHHHHH
Q 038994 46 FEVAGG-PYGEEPAVKA-AG--PLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGSLMGSWKFL 121 (471)
Q Consensus 46 ~~~iG~-~~~~~~~~~~-~G--~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~ 121 (471)
+.-.|. =+-.|+.+.. +| .....+++++.++..-+. +-++.. ...|+.+... +..||+.|.+-.-+..+
T Consensus 14 amFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~L-----gvia~~-~~~~~~~~l~-~~v~~~f~~if~~~i~l 86 (427)
T PF05525_consen 14 AMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLL-----GVIAVA-KSGGGIEDLA-SRVGPKFALIFTILIYL 86 (427)
T ss_pred HHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHH-----HHHHHh-hcCCCHHHHh-cccCcHHHHHHHHHHHH
Confidence 333453 2455666554 44 345677777776632221 222222 1233455544 55588877765543322
Q ss_pred --HHhhHHHHHHHHHHH-HHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038994 122 --SGVINIAAFPVLCID-YLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPK 198 (471)
Q Consensus 122 --~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (471)
+-....+-.+...-+ -+...++. ++.+...+..+++..+..++.++.-|...++-.+.+-..++.++++++.++.+
T Consensus 87 ~IGP~~aiPRtaa~sfe~~i~p~~~~-~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~ 165 (427)
T PF05525_consen 87 SIGPLFAIPRTAAVSFEMGIAPFFPE-NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFS 165 (427)
T ss_pred HHHhcccCcchhhhhHHHhhhccCCc-ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 222222322222222 22333443 34567778888888888999999999999999999988888888887777665
Q ss_pred ccCCCccccCCCCCCCchh-H---------HHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHH----HHHHHHHH
Q 038994 199 IKPHRWFSSGQKGLKKDWN-L---------FFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVI----FTCVAYLI 264 (471)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~----~~~~~y~l 264 (471)
...+.-.+.+.. .+..+. + .+.+.. |...-..+--....||+ |+..|.+..+-+ ...++|..
T Consensus 166 p~g~~~~~~~~y-~~~~f~~Gf~eGY~TMD~laal~--Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag~ia~~lL~~IY~g 241 (427)
T PF05525_consen 166 PIGPPQAPSGAY-ASNPFFKGFLEGYQTMDALAALA--FGIIIINAIRQKGYKDK-KEIKKYTIKAGLIAGILLALIYGG 241 (427)
T ss_pred CCCCccccchhh-hhhHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332221111100 011111 1 122222 22222222222233343 445555544444 44455554
Q ss_pred HHHHHHhcccC-CcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccCC
Q 038994 265 PLFAVIGAVNV-DQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSKK 343 (471)
Q Consensus 265 ~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r 343 (471)
..+.-....+. ++..+....+..+.++..|+.+..++.+.+.++++++..+-..+.+..+. +..|
T Consensus 242 L~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~-------------~~~~- 307 (427)
T PF05525_consen 242 LAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFS-------------ELFP- 307 (427)
T ss_pred HHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhc-
Confidence 44443332222 22233345678888899999999999999999999999888888886554 4444
Q ss_pred CCCcHH-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Q 038994 344 FNTPWV-GILVSTLITLGVSYMDFESIVASANFLYSLGM 381 (471)
Q Consensus 344 ~~~P~~-a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (471)
|.+|+ .+....+++.++...+++.+.++..=...+.|
T Consensus 308 -kisY~~~v~i~~i~S~~ian~Gl~~Ii~~s~PiL~~iY 345 (427)
T PF05525_consen 308 -KISYKVWVIIFTIFSFIIANLGLDQIIKISVPILMFIY 345 (427)
T ss_pred -ccChHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHh
Confidence 23333 34445677777888999999988875444444
No 67
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.65 E-value=0.00014 Score=73.40 Aligned_cols=232 Identities=9% Similarity=0.005 Sum_probs=114.1
Q ss_pred ccccccccchhHHHHHHHhhcc-cccCChhHHHhh--ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 038994 29 TIKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKAA--GPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADR 105 (471)
Q Consensus 29 ~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~--G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 105 (471)
++.+|+-++++.+.+=++..+. ..+.++...... +....+++.+++.++..++ ....+..+.++-. ......|.
T Consensus 8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~-~~l~~~~G~r~Gl--~~~v~sR~ 84 (442)
T TIGR00800 8 KEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIF-VALNSRAGAKYGL--PFPVLSRA 84 (442)
T ss_pred CcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-HHHhhhhHHHhCC--Ccchhhhh
Confidence 3445667888887776666543 223332222222 2333444545544432222 2224555555533 36678888
Q ss_pred HhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCC----h-----hHHHHHHHHHHHHHH-HhhccchhhHH
Q 038994 106 AFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESG----W-----PRSLAIMVSTCILSF-LNFTGLTIVGY 175 (471)
Q Consensus 106 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~-~~~~g~~~~~~ 175 (471)
.||.+.+.+.+.+.++..+...+.+....++.++..++...+. . ...+..+++..+... ....|.|...+
T Consensus 85 ~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~ 164 (442)
T TIGR00800 85 SFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHL 164 (442)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 9999988888888888877778888888877665554332111 0 222222222222222 34566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-CCC-ccccCCCCCCCchhHHHH---HHH-HHhhhhhhhhhhhhhccCCCcchhH
Q 038994 176 AAVLLGLVSLSPFIIMSLAAIPKIK-PHR-WFSSGQKGLKKDWNLFFN---TLF-WNLNFWDNVSTLAGEVDRPQKTFPV 249 (471)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~---~~~-~af~G~e~~~~~~~E~k~p~k~ip~ 249 (471)
.+.......++.++.. ++...+.+ ... ...............++. ..+ +...+....+.++...|++ |+-.+
T Consensus 165 ~~~~a~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~-~~~~~ 242 (442)
T TIGR00800 165 FEWLAVVPPFAAFGML-IWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSK-KTAIW 242 (442)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCc-cchHH
Confidence 6654444433333333 22222221 111 111110010112222222 211 2223445677888888886 44556
Q ss_pred HHHHHHHHHHHHHHHH
Q 038994 250 ALLVAVIFTCVAYLIP 265 (471)
Q Consensus 250 ai~~~~~~~~~~y~l~ 265 (471)
+...+.....+...+.
T Consensus 243 ~~~~~~~~~~~~~~~~ 258 (442)
T TIGR00800 243 GQFLALPGGFTLTCFF 258 (442)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666665544443333
No 68
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.63 E-value=0.00014 Score=72.65 Aligned_cols=282 Identities=10% Similarity=0.070 Sum_probs=147.7
Q ss_pred cccccchhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCC
Q 038994 32 SKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGP 109 (471)
Q Consensus 32 ~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 109 (471)
.|++++|-......++..+ ...+.++.....|.....+. ++..+..+..+..+.+.-++.+ .-...+|.++.+|+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~ 78 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYE--LGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGK 78 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCc
Confidence 4788998888888887776 46777777766664222211 1111123334666777666655 45799999999998
Q ss_pred -hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHH-HHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 038994 110 -FFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIM-VSTCILSFLNFTGLTIVGYAAVLLGLVSLSP 187 (471)
Q Consensus 110 -~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 187 (471)
....+.+....+......+......+..++..++. +.+...+ ...+.......-|.|.......+-.++.++.
T Consensus 79 ~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi-----~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~~ 153 (407)
T TIGR00813 79 RILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL-----DLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVIMILG 153 (407)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----hHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHH
Confidence 46677777777777777788888888888777652 2222222 2223334455567777665544433333332
Q ss_pred HHHHHHHhhccc-------------cC-----CCccccCCCC--CCCchhHHHHH---H-HHHhhhhhhhhhhhhhccCC
Q 038994 188 FIIMSLAAIPKI-------------KP-----HRWFSSGQKG--LKKDWNLFFNT---L-FWNLNFWDNVSTLAGEVDRP 243 (471)
Q Consensus 188 ~~~~~~~~~~~~-------------~~-----~~~~~~~~~~--~~~~~~~~~~~---~-~~af~G~e~~~~~~~E~k~p 243 (471)
.++..+..+.+. ++ .......... ....|.-.... . .+.+.. ....+-.=-.||+
T Consensus 154 ~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~qR~~a~ks~ 232 (407)
T TIGR00813 154 TFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWTN-QVIVQRCLAAKSA 232 (407)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHhcC-HHHhhHHHhcCCH
Confidence 222222211110 01 0000000000 01111111000 0 000100 0112222334554
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHH---hccc---CCcc----cccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 038994 244 QKTFPVALLVAVIFTCVAYLIPLFAVI---GAVN---VDQS----QWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLF 313 (471)
Q Consensus 244 ~k~ip~ai~~~~~~~~~~y~l~~~~~~---~~~~---~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 313 (471)
|+.+|+..++.+.....+++..+.-. ...+ ++.. .+.+..+..+.++..++++..++.+..+.+..++.
T Consensus 233 -~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~agilaA~mST~ 311 (407)
T TIGR00813 233 -KHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAAILAAVMSTL 311 (407)
T ss_pred -HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHHHHHHHHHhh
Confidence 78889998887766555544433222 1122 1111 23455667777777888777777777677766666
Q ss_pred HHHHhhhHHH
Q 038994 314 EAQLSSSAYQ 323 (471)
Q Consensus 314 ~~~~~~~sR~ 323 (471)
.+.+.+.+-.
T Consensus 312 ~s~l~a~ss~ 321 (407)
T TIGR00813 312 SSQLNSASTV 321 (407)
T ss_pred hhhHHHHHHH
Confidence 6666554433
No 69
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.62 E-value=0.00077 Score=66.46 Aligned_cols=288 Identities=11% Similarity=0.064 Sum_probs=152.7
Q ss_pred cCCCCccccccccccchhHHHHHHHhhcc-cccCChhHHHh--hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCh
Q 038994 22 PTTVATTTIKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKA--AGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGG 98 (471)
Q Consensus 22 ~~~~~~~~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~--~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg 98 (471)
-+|..+.++.+|+-++|+.+++=.+.+.- .-+.+...... .++.-.+++.+++-++...+ ...-+..+.++-- .
T Consensus 28 N~DL~P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~-m~Lng~~G~~~gI--p 104 (497)
T COG1953 28 NEDLAPTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIF-MVLNGHAGSKYGI--P 104 (497)
T ss_pred CCCCCCCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HHhccCcccccCC--C
Confidence 35566667889999999999988776632 22333333222 23433444444444431111 1112222222211 1
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----cccC----------CChhHHHHHHHHHHHHHH
Q 038994 99 FVIWADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVI----HPLE----------SGWPRSLAIMVSTCILSF 164 (471)
Q Consensus 99 ~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~----------~~~~~~~~~~~~~~~~~~ 164 (471)
.-...|..||-+.+-.-.-...+..+...+.++...+..++.++ |... .+..+++..+++-++-..
T Consensus 105 Fpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l 184 (497)
T COG1953 105 FPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLL 184 (497)
T ss_pred chHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHH
Confidence 23467778887777766666666666666667776666665543 3311 123455555555566666
Q ss_pred HhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccccCCCc---cccCCCCCCCchhHHHHHHHHHhhhhh----hhhhhh
Q 038994 165 LNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKPHRW---FSSGQKGLKKDWNLFFNTLFWNLNFWD----NVSTLA 237 (471)
Q Consensus 165 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~af~G~e----~~~~~~ 237 (471)
+-..|.+...|++.+...+..+.++.+.++...+.+..+. .+....+....+..++.........|. ..+..+
T Consensus 185 ~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFs 264 (497)
T COG1953 185 VLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFT 264 (497)
T ss_pred HHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhh
Confidence 7778999999999998888888888888887765544221 121111112222333333322333333 355666
Q ss_pred hhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHH
Q 038994 238 GEVDRPQKTFPVALLVAVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKI-WLEVGAVLSAIGLFE 314 (471)
Q Consensus 238 ~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~ 314 (471)
++.|+| |+.-++..+++.+...++-+..++.......-.-..-.+|. ++.+++....... +..+...++.+++..
T Consensus 265 Rfa~s~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~-di~~~~~~~~~~~fl~~l~~~iati~~Ni 340 (497)
T COG1953 265 RFAKSQ-KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPL-DIVARFLSGFYAAFLAGLTFAVATISTNI 340 (497)
T ss_pred cccCCh-hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHH-HHHHHhccchHHHHHHHHHHHHHHHhhhH
Confidence 777776 44556666777766666655555443221100001111333 4555554443333 455555566655543
No 70
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=98.55 E-value=1.7e-05 Score=77.96 Aligned_cols=241 Identities=15% Similarity=0.131 Sum_probs=125.1
Q ss_pred cccccchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCCh
Q 038994 32 SKKLTLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPF 110 (471)
Q Consensus 32 ~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~ 110 (471)
+++-+..+.+.-...++.| |++..|.+....|-...++.....++ ......+...+.+.+.++. ..-.-.++.+|+.
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~-~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~~ 80 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAF-LSLLSLYLLSKCAKKSGER-TYSSLGDLIFGKL 80 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHH-HHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCCC
Confidence 4455778888888888889 89999999999886544544455555 3666777788888888776 4444555666654
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHhcc-ccCCC-h-hH-HHHHHHHHHHHHHHhhc-cchhhHHHHHHHH
Q 038994 111 FGSLMGSWKFLSGVINIAAFPVLCI----DYLKKVIH-PLESG-W-PR-SLAIMVSTCILSFLNFT-GLTIVGYAAVLLG 181 (471)
Q Consensus 111 ~g~~~g~~~~~~~~~~~a~~~~~~~----~~~~~~~~-~~~~~-~-~~-~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~ 181 (471)
.........-..... +..+..... ......+. ..... | .+ ..+.++...++..+.+. .+...+ ......
T Consensus 81 g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk-~tS~~s 158 (411)
T KOG1305|consen 81 GKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLK-YTSALS 158 (411)
T ss_pred ceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHH-HHHHHH
Confidence 321111111000000 000000000 11111110 00000 0 00 00111122222222222 222222 222222
Q ss_pred HHHHHHHHHHHHHhhccccC--CCccccCCCCC-CCchhHHHHHHHHHhhhhhhhhhhhhhccCCC-cchhHHHHHHHHH
Q 038994 182 LVSLSPFIIMSLAAIPKIKP--HRWFSSGQKGL-KKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQ-KTFPVALLVAVIF 257 (471)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~-k~ip~ai~~~~~~ 257 (471)
+...+.+++..+........ .......++.. ..++...++..+++|...+.....-.|+|||+ |++-+....+...
T Consensus 159 ~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~ 238 (411)
T KOG1305|consen 159 LASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIIL 238 (411)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHH
Confidence 22222222222222222111 11111111110 13556667778899999999999999999996 6888888899999
Q ss_pred HHHHHHHHHHHHHhcccCC
Q 038994 258 TCVAYLIPLFAVIGAVNVD 276 (471)
Q Consensus 258 ~~~~y~l~~~~~~~~~~~~ 276 (471)
..++|.......+...+++
T Consensus 239 ~~~iy~~~g~~GYL~Fg~~ 257 (411)
T KOG1305|consen 239 ATLIYLLTGLFGYLTFGDL 257 (411)
T ss_pred HHHHHHHHHHhhhheeccc
Confidence 9999999988877766654
No 71
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.54 E-value=0.00087 Score=65.28 Aligned_cols=276 Identities=14% Similarity=0.134 Sum_probs=145.4
Q ss_pred hhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCChHHHHHHHHhCChhHH
Q 038994 38 IPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELST--AFPGDGGFVIWADRAFGPFFGS 113 (471)
Q Consensus 38 ~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~--~~p~~Gg~y~~~~~~~g~~~g~ 113 (471)
......+.|+-+| .+.-.|...+..|..+.++-++++.++..+|. ..+|++- +..++ ..-.| ++..+++..-
T Consensus 12 lGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPl--li~Ef~iGr~~~~~-~~~a~-~~l~~~~~~~ 87 (439)
T COG0733 12 LGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPL--LLAEFAIGRRGRKN-AVGAF-RKLAPKKKWE 87 (439)
T ss_pred HHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHH--HHHHHHhhhhcCCC-hhHHH-HHhccCccch
Confidence 4445555666666 47788887776555577777888777556644 4577554 33322 22222 2222223333
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hccc-cCCChhHHHHHHHHHHHHHHHhhccchh-h
Q 038994 114 LMGSWKFLSGVINIAAFPVLCIDYLKK------------------VIHP-LESGWPRSLAIMVSTCILSFLNFTGLTI-V 173 (471)
Q Consensus 114 ~~g~~~~~~~~~~~a~~~~~~~~~~~~------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 173 (471)
..||.-.+......+.+....+-.+.+ .+.+ ..+++......+++..+..++..+|++- .
T Consensus 88 ~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GI 167 (439)
T COG0733 88 WIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGI 167 (439)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhH
Confidence 344443333333333333222221111 1111 1123444455555666666777788876 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccC----C-CccccCCCC-CCCchhHHHHHHHHHhh-hhhhhhhhhhhccCCCcc
Q 038994 174 GYAAVLLGLVSLSPFIIMSLAAIPKIKP----H-RWFSSGQKG-LKKDWNLFFNTLFWNLN-FWDNVSTLAGEVDRPQKT 246 (471)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~-~~~~~~~~~~~~~~af~-G~e~~~~~~~E~k~p~k~ 246 (471)
-|.+.++.....+.++++.+-.+..... + .+.|+...- +...|...+...+|+.+ |+..-.+++.-.++ +.|
T Consensus 168 Ek~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~~ 246 (439)
T COG0733 168 EKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-KSD 246 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccc
Confidence 6777777766666555555544432211 0 122221111 13356667777888766 88888888888777 688
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcccccc---cHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHh
Q 038994 247 FPVALLVAVIFTCVAYLIPLFAVIGA---VNVDQSQWDS---GFHATAAEMIA-GKWLKIWLEVGAVLSAIGLFEAQLS 318 (471)
Q Consensus 247 ip~ai~~~~~~~~~~y~l~~~~~~~~---~~~~~~~~~~---~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~ 318 (471)
+++.-.........+-++..+.+... ...+...... ..+.+++++.. |.....++.....++.++|..+.+-
T Consensus 247 l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSmlE 325 (439)
T COG0733 247 LVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLE 325 (439)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877777666655555544422 2222111111 23566666663 3444444444455555666555544
No 72
>PRK00701 manganese transport protein MntH; Reviewed
Probab=98.54 E-value=0.0014 Score=65.63 Aligned_cols=61 Identities=13% Similarity=-0.064 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcCCC-CC-hHHHHHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 038994 82 EALITAELSTAFPG-DG-GFVIWADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVI 142 (471)
Q Consensus 82 ~a~~~~el~~~~p~-~G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (471)
..+.+-|++.|+-. +| +.-+-.++.+|+++++.......+........+....+.-++..+
T Consensus 77 ~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 77 MAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred HHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47778888888765 34 788899999999888876555545555555555554444444443
No 73
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.50 E-value=0.0015 Score=64.29 Aligned_cols=312 Identities=13% Similarity=0.114 Sum_probs=161.8
Q ss_pred HHHHHhhcc-cccCChhHHHh-hCh--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHHHHHH
Q 038994 42 FLIYFEVAG-GPYGEEPAVKA-AGP--LYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGSLMGS 117 (471)
Q Consensus 42 ~~~~~~~iG-~~~~~~~~~~~-~G~--~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~ 117 (471)
+.-++.-.| |=+-.|+.+.. +|. ...++++++.++..-+ .+-++-.. ..|+.....+| .||+.+.+-.-
T Consensus 15 ~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPl-----Lgiiava~-~~g~~~~l~~r-v~~~f~~~f~~ 87 (439)
T PRK15433 15 FMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPV-----LTVVALAK-VGGGVDSLSTP-IGKVAGVLLAT 87 (439)
T ss_pred HHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHH-----HHHHHHhh-cCCCHHHHhhh-cchHHHHHHHH
Confidence 333333346 32445665554 443 3556677776663122 12222222 22556665544 47777766433
Q ss_pred HHHH--HHhhHHHHHHHHHHHH-HHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 038994 118 WKFL--SGVINIAAFPVLCIDY-LKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLA 194 (471)
Q Consensus 118 ~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (471)
+..+ +-....+-.+...-+. +..++|. . +.+..+..+++..+..++.++.-|...++-.+.+-..++.++++++.
T Consensus 88 ~i~l~IGP~~aiPRtaavsfEm~i~p~~~~-~-~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~ 165 (439)
T PRK15433 88 VCYLAVGPLFATPRTATVSFEVGIAPLTGD-S-ALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVA 165 (439)
T ss_pred HHHHHHhhccccCCccccchhheeeccCCc-c-cHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3222 2222222111111111 2222332 1 24556677778888888888999999999888888888877777777
Q ss_pred hhccccCCCccccCCC--C-CCCchh------HHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHH----HHHHHHHH
Q 038994 195 AIPKIKPHRWFSSGQK--G-LKKDWN------LFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLV----AVIFTCVA 261 (471)
Q Consensus 195 ~~~~~~~~~~~~~~~~--~-~~~~~~------~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~----~~~~~~~~ 261 (471)
++.+...+.-.+.+.. + ...++. +.+.+..|+..=.++. -....||+ |++.|.... +.+...++
T Consensus 166 ~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i--~~~G~~~~-~~~~k~t~~ag~ia~~~L~~v 242 (439)
T PRK15433 166 AIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAA--RSRGVTEA-RLLTRYTVWAGLMAGVGLTLL 242 (439)
T ss_pred HHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHcCCCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 6654322211110100 0 001111 1222233332222222 22335554 444444443 34444555
Q ss_pred HHHHHHHHHhccc-CCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhc
Q 038994 262 YLIPLFAVIGAVN-VDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLR 340 (471)
Q Consensus 262 y~l~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~ 340 (471)
|....+.-....+ .++..+...-.....++..|+....++.+...++++++..+...+.++.+...
T Consensus 243 Y~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~------------- 309 (439)
T PRK15433 243 YLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQY------------- 309 (439)
T ss_pred HHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------
Confidence 5555444332222 11111223345566677788989999999999999999999998888665332
Q ss_pred cCCCCCcH-HHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Q 038994 341 SKKFNTPW-VGILVSTLITLGVSYMDFESIVASANFLYSLGM 381 (471)
Q Consensus 341 ~~r~~~P~-~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (471)
. +.|+ ..+....+++..+...+++.++.+..=...+.|
T Consensus 310 ~---~isY~~~v~i~~l~S~~lSn~G~~~II~~s~PiL~~iY 348 (439)
T PRK15433 310 V---PLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIY 348 (439)
T ss_pred c---CCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 1 1333 334455666677777888888877763333333
No 74
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=98.42 E-value=0.0022 Score=61.71 Aligned_cols=340 Identities=18% Similarity=0.182 Sum_probs=168.5
Q ss_pred hhHHHHHHHhhcc-cccCChhHHHh-hC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHH
Q 038994 38 IPLIFLIYFEVAG-GPYGEEPAVKA-AG--PLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGS 113 (471)
Q Consensus 38 ~~~~~~~~~~~iG-~~~~~~~~~~~-~G--~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 113 (471)
+..-++.++.-.| |=.-.|+.+.. +| ......++++.++ .+|. .-+... -.+||.+.=..+..||+.|.
T Consensus 8 ~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgV--glPl----LgiIa~-a~~g~~~~~l~~~i~~~fg~ 80 (431)
T COG1114 8 IALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGV--GLPL----LGIIAV-ALYGGGVESLATRIGPWFGV 80 (431)
T ss_pred HHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHh--hHHH----HHHHHh-hccCCCHHHHhhhccchHHH
Confidence 3333444444456 32444555444 33 3455666666665 2221 111111 13444555555666888877
Q ss_pred HHHHH-HHH-HHhhHHHHHHHHHHHHHHHhccccC--CChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH
Q 038994 114 LMGSW-KFL-SGVINIAAFPVLCIDYLKKVIHPLE--SGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFI 189 (471)
Q Consensus 114 ~~g~~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (471)
+-.-. |.. +-....+-.+...-+. ...|..+ ++....+..+++..+..++.+..-|...++-.+.+-+.++.++
T Consensus 81 ~f~~~iyLsIGPffAiPRt~~vsfe~--~i~p~~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~ 158 (431)
T COG1114 81 LFAIAIYLSIGPFFAIPRTGAVSFEV--GISPLLGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLL 158 (431)
T ss_pred HHHHHHHHHhcccccCCcccchhHHH--hhhcccCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHH
Confidence 64433 222 2222222111111111 1222222 3344556667777788888888999999999999988888877
Q ss_pred HHHHHhhccccCCCccccCCCCC---CCchh------HHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHH-
Q 038994 190 IMSLAAIPKIKPHRWFSSGQKGL---KKDWN------LFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTC- 259 (471)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~- 259 (471)
++.+..+.+.+.+.-++.+...+ ..|+. +.+.+. +|...-.-+--..-.+++ |+..|-...+-++..
T Consensus 159 il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal--~FgivIv~alk~~g~~~~-~~~~~~~~~aglIa~i 235 (431)
T COG1114 159 ILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAAL--AFGIVIVNALKSKGVTTK-KQIIKYTIKAGLIAAI 235 (431)
T ss_pred HHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHH
Confidence 77766554333221111100000 01111 122223 333322222222223333 344444444433333
Q ss_pred ---HHHHHHHHHHHhcccCC---cccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCC
Q 038994 260 ---VAYLIPLFAVIGAVNVD---QSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFL 333 (471)
Q Consensus 260 ---~~y~l~~~~~~~~~~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~l 333 (471)
.+|...... +....+ ..++...-+.+..++.+|+....++.+.+.++++++..+-..+.+
T Consensus 236 ~La~iY~~L~yl--Ga~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~a------------ 301 (431)
T COG1114 236 LLALIYLSLFYL--GATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACA------------ 301 (431)
T ss_pred HHHHHHHHHHHh--ccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 333333222 211111 122233446667777788888899999999999998888777766
Q ss_pred chhhhhccCCCCCcHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhCCCCCCCcccC
Q 038994 334 PKFFGLRSKKFNTPWVGILVSTLITLGVSYMDFESIVASANFLYSLGML--LEFAAFIWLRMKKPQLKRPYRVP 405 (471)
Q Consensus 334 P~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 405 (471)
++|+|.-||-. -.....+..+++.++...+++.+.....=.....|- ++.+.....++.-+..++.|+.+
T Consensus 302 -efF~~~~p~~S-Y~~~v~if~i~sflvan~GL~~Ii~isvPvL~~iYPiaI~Lv~l~~~~k~~~~~~~~y~~~ 373 (431)
T COG1114 302 -EFFSKLVPKLS-YKTWVIIFTLISFLVANLGLEQIIKISVPVLTAIYPIAIALVLLSFARKLWKNSKRVYRLT 373 (431)
T ss_pred -HHHHHhccccc-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCcchhHHHH
Confidence 34555555222 223344456777777788888888777633333332 22223333333333334445543
No 75
>PRK12488 acetate permease; Provisional
Probab=98.37 E-value=0.0028 Score=65.65 Aligned_cols=146 Identities=12% Similarity=0.003 Sum_probs=87.0
Q ss_pred cccccchhHHHHHHHhhcc--cccCChhHHHhhChHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHh
Q 038994 32 SKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYA--LLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAF 107 (471)
Q Consensus 32 ~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~--~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 107 (471)
.|++++|...+...++..+ ...+.++.....|.... .+++.++ .....+.+++--++... -..++|.++.|
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g~~~g----~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf 140 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALGVLAG----WPIILFLIAERLRNLGK-YTFADVVSYRL 140 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH----HHHHHHHHHHHHHHCCC-cchHHHHHHHc
Confidence 5899999998887777766 45777777777665322 2222211 11123445555555543 47888999999
Q ss_pred C-ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 038994 108 G-PFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLS 186 (471)
Q Consensus 108 g-~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 186 (471)
| +....+.+....+.............+..++..++. +.+...+ +...+.......-|.|...+.+.+=.++.++
T Consensus 141 ~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi--~~~~~ii--i~~~i~~~Yt~~GGm~av~~td~iQ~~im~~ 216 (549)
T PRK12488 141 AQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI--SYLYAVV--IVGALMVLYVTFGGMLATTWVQIIKAVLLLS 216 (549)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHH--HHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 8 567888888777766666677777777777776542 1121111 2222333444456888766665544433333
No 76
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.34 E-value=0.004 Score=61.53 Aligned_cols=226 Identities=10% Similarity=-0.009 Sum_probs=123.6
Q ss_pred HHHHhhcCCCCChHHHHHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHH
Q 038994 86 TAELSTAFPGDGGFVIWADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFL 165 (471)
Q Consensus 86 ~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (471)
.+..+.++.. ......|..||.+.+.+......+..+...+.+....++.++...+...+........+++.++....
T Consensus 49 ~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~ 126 (386)
T TIGR02358 49 AGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGILVTLW 126 (386)
T ss_pred HHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 3444444433 36778888999999999998888888888888888888888777643211111222333344456666
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCCCCCCchhHHHHHHHHH-hhhhhhhhhhhhhccCCC
Q 038994 166 NFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKPHRWFSSGQKGLKKDWNLFFNTLFWN-LNFWDNVSTLAGEVDRPQ 244 (471)
Q Consensus 166 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-f~G~e~~~~~~~E~k~p~ 244 (471)
..+|.|...+++.+...+..+..+........+.+.+.... .++ ..++........-. -.+....+.++...|+|
T Consensus 127 ~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~-~~s~~~~~~~~~~~~~swa~~~~DysRy~k~~- 202 (386)
T TIGR02358 127 LLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWN--RAG-DMSFAVAVELVIAMPLSWLPLIADYTRFARNP- 202 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcC--CCC-CccHHHHHHHHHHHHHHHHHHccchhhhcCCC-
Confidence 77899999999988877776665555444444333221111 111 12333322221111 12223367778888876
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 038994 245 KTFPVALLVAVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQI 324 (471)
Q Consensus 245 k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l 324 (471)
|+.-++...+..+...+..+.........+. ++|...+ .+.+.. .+..+...++..++.....++.+-.+
T Consensus 203 ~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~------~d~~~~~-~~~g~~---~~~~~~~~l~~~~~n~~N~ys~~l~l 272 (386)
T TIGR02358 203 RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ------TDIISIL-AGAGLG---IPALLIILLSTVTTTFMDIYSAAIST 272 (386)
T ss_pred cceehHHHHHHHHHHHHHHHHHHHHHHhcCC------CCHHHHH-HhccHH---HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455777777666655555444443333221 2343333 222211 22333445555555555555555444
Q ss_pred HHH
Q 038994 325 LGM 327 (471)
Q Consensus 325 ~~~ 327 (471)
..+
T Consensus 273 ~~l 275 (386)
T TIGR02358 273 GNL 275 (386)
T ss_pred HHH
Confidence 443
No 77
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.33 E-value=0.003 Score=64.43 Aligned_cols=157 Identities=13% Similarity=0.004 Sum_probs=95.2
Q ss_pred cccccccchhHHHHHHHhh-cc--cccCChhHHHhhChHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 038994 30 IKSKKLTLIPLIFLIYFEV-AG--GPYGEEPAVKAAGPLYALLGFM--IFPFIWSIPEALITAELSTAFPGDGGFVIWAD 104 (471)
Q Consensus 30 ~~~r~l~~~~~~~~~~~~~-iG--~~~~~~~~~~~~G~~~~~~~~~--i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~ 104 (471)
.-.|+++.+ ..+++.+.. .+ ..++.|+.....|.....+... +...+.....+--..++. +-++.-..++|.+
T Consensus 35 ~~gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 35 LGGRSLGPF-VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred ccCCcCChH-HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 457888988 555555443 33 4688888887777643322222 233333444455566677 5556678999999
Q ss_pred HHhC-ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 038994 105 RAFG-PFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLV 183 (471)
Q Consensus 105 ~~~g-~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 183 (471)
+.|| +....+.+.+..+......+....+.+..++..++ .+........+.++..-...--++++.++..+|.....+
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg~im~i 191 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYVTGILIGALIVALYTFLGGLRAVVWTDFIQGLIMLI 191 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence 9999 88899999998888888888998888888876666 221112222222222222233334444555566555444
Q ss_pred HHHHHH
Q 038994 184 SLSPFI 189 (471)
Q Consensus 184 ~~~~~~ 189 (471)
.+..+.
T Consensus 192 ~~~~~~ 197 (493)
T COG0591 192 ALIVIP 197 (493)
T ss_pred HHHHHH
Confidence 444333
No 78
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.32 E-value=0.006 Score=62.66 Aligned_cols=145 Identities=10% Similarity=-0.083 Sum_probs=76.6
Q ss_pred ccccccchhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHH-HH---hhcCCCCChHHHHHH
Q 038994 31 KSKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITA-EL---STAFPGDGGFVIWAD 104 (471)
Q Consensus 31 ~~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~-el---~~~~p~~Gg~y~~~~ 104 (471)
-.|++++|-...-..++..+ ...+.|+.....|... .+..+ ...+..+.....+. .+ ..+.++.-..++|.+
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~~~~~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-SWIAI-GLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 36899999888777777666 3567777777777533 21111 11110111111111 11 112334557899999
Q ss_pred HHhCCh---hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q 038994 105 RAFGPF---FGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLG 181 (471)
Q Consensus 105 ~~~g~~---~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (471)
+.||++ ...+.+....+......+......+..++..++. +.. ..+.+...+......+-|.|...+...+=.
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi---~~~-~~iii~~~iv~iYt~~GGl~aV~~TD~iQ~ 191 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGM---SYE-TALWAGAAATILYTFIGGFLAVSWTDTVQA 191 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999853 4545555554554555556666666666666542 111 122222334445555567777665544333
No 79
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.31 E-value=0.0061 Score=62.35 Aligned_cols=282 Identities=12% Similarity=0.045 Sum_probs=130.8
Q ss_pred ccccccchhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCChHHHHHH
Q 038994 31 KSKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAF----PGDGGFVIWAD 104 (471)
Q Consensus 31 ~~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~----p~~Gg~y~~~~ 104 (471)
-.|++++|-...-..++..+ ...+.++.....|... .+..+ +..+..+...+.+++--+++ ++.-..++|.+
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~-g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAI-GLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 36888888877666565555 3566777666666533 22111 11111122233344433322 23446899999
Q ss_pred HHhCCh---hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q 038994 105 RAFGPF---FGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLG 181 (471)
Q Consensus 105 ~~~g~~---~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (471)
+.||++ ...+.+-...+......+......+..++..++. + ......+...+.......-|.|.......+=.
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi--~--~~~~iii~~~i~~~Yt~~GGl~av~~TD~iQ~ 187 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL--D--YKTGLLIGALIIVIYTFFGGFLAVSWTDFVQG 187 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--c--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999953 4444444444444444555666666666666542 1 11112222334445555667777665544333
Q ss_pred HHHHHHHHHHHHHhhccc-------------cCCCccccCCCCCCCchhHHHHHHHHHh--hhhhhhhhhhhhccCCCcc
Q 038994 182 LVSLSPFIIMSLAAIPKI-------------KPHRWFSSGQKGLKKDWNLFFNTLFWNL--NFWDNVSTLAGEVDRPQKT 246 (471)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~af--~G~e~~~~~~~E~k~p~k~ 246 (471)
++.++..+++.+..+.+. +++.+... . +.++........|.+ .|.....+-.--.||+ |+
T Consensus 188 ~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~--~--~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~-k~ 262 (487)
T TIGR02121 188 LLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMF--K--GASVIAIISLLAWGLGYFGQPHIIVRFMAIRSH-KE 262 (487)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCC--C--CCCHHHHHHHHHHHHHhccchHHHHHHHhcCCH-HH
Confidence 333332222222221111 11111110 1 112222222222221 2222222222224554 67
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH---HHhcc---cCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038994 247 FPVALLVAVIFTCVAYLIPLFA---VIGAV---NVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSS 320 (471)
Q Consensus 247 ip~ai~~~~~~~~~~y~l~~~~---~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 320 (471)
..|+...+.......++..... ..... |..+..++|..+..+.++..+++...++.+..+.+..++..+.+++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~ 342 (487)
T TIGR02121 263 LPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLVS 342 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877754332222211111 11111 11112234455666666677777766666666666777777666665
Q ss_pred HHH
Q 038994 321 AYQ 323 (471)
Q Consensus 321 sR~ 323 (471)
+-.
T Consensus 343 ss~ 345 (487)
T TIGR02121 343 SSA 345 (487)
T ss_pred HHH
Confidence 533
No 80
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.27 E-value=0.00025 Score=70.82 Aligned_cols=288 Identities=14% Similarity=0.056 Sum_probs=132.7
Q ss_pred cccccchhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCC
Q 038994 32 SKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGP 109 (471)
Q Consensus 32 ~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 109 (471)
.|+++++-.....+++..| ..++.+......|.....+ .+...+ .....++.++.--++.. .-...+|.++.+|+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~-~~~~~~-~~~~~~~~~~~~~r~~~-~~T~~e~~~~Ryg~ 81 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWY-AIGYAI-GFLLFALFFAPRLRRSG-AVTIPEYLEKRYGS 81 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHH-HHHHHH-HHHHHHHHTHHHHHHTT---SHHHHHHHHT-H
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeee-ccccch-hHHHHHHHHHHhhcccc-hhhhhhhhhhhcCC
Confidence 5788988888777777777 3567777777766533221 111111 12223344455444443 45789999999998
Q ss_pred hh--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 038994 110 FF--GSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSP 187 (471)
Q Consensus 110 ~~--g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 187 (471)
+. ..+.+....+......+....+.+..++..++. +... ...+...+.......-|.|...+...+-.++.++.
T Consensus 82 ~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi---~~~~-~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~~~ 157 (406)
T PF00474_consen 82 KALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI---PYNT-AILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMIIG 157 (406)
T ss_dssp HH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-----HHH-HHHHHHHHHHHTTCTT------SHHHHHHHHHHHH
T ss_pred chhhhhhcccccchhhhhhhhccccccccchhhccch---hhhH-HHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHH
Confidence 88 555555555556666777777888888777652 1121 22222333334455567776665443333333222
Q ss_pred HHHHHHHhhcc-------------ccC---CCccccCCCCCCCchhHH--H-HHHHHHhhhhhhhhhhhhhccCCCcchh
Q 038994 188 FIIMSLAAIPK-------------IKP---HRWFSSGQKGLKKDWNLF--F-NTLFWNLNFWDNVSTLAGEVDRPQKTFP 248 (471)
Q Consensus 188 ~~~~~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~--~-~~~~~af~G~e~~~~~~~E~k~p~k~ip 248 (471)
.++..+..+.+ .++ +.+.+.+.+. ..+.... + ....+...+.....+-.--.||+ |+..
T Consensus 158 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aak~~-~~ar 235 (406)
T PF00474_consen 158 AIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSM-FSSPLFFLSFWIALMLGTFGAPHFWQRFLAAKSP-KTAR 235 (406)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS------SSGGGGS-TTHHHHSTHHH-HHHHHHHSSSHH-HHHH
T ss_pred HHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCccc-ccchhhhHHHHHHHHhhhccchHHHHHHHhcCCH-HHHH
Confidence 22222221110 111 1111111100 0011111 0 01111122222222222333554 6788
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHhcccC---CcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038994 249 VALLVAVIFTCVAYLIPL------FAVIGAVNV---DQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSS 319 (471)
Q Consensus 249 ~ai~~~~~~~~~~y~l~~------~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 319 (471)
|+...+.....+++.... .......|. ++..+++..+..+.++..+++...++.+..+.+..++..+.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~~ST~~s~l~a 315 (406)
T PF00474_consen 236 KGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAIMSTADSLLLA 315 (406)
T ss_dssp HHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHhhhHHHHHHHhh
Confidence 888777654444433311 112222221 12233455677788888888888777777777777888777776
Q ss_pred hHHHHHHHHhcC
Q 038994 320 SAYQILGMADLG 331 (471)
Q Consensus 320 ~sR~l~~~a~d~ 331 (471)
.+-.+ +||=
T Consensus 316 ~ss~~---~~Di 324 (406)
T PF00474_consen 316 ISSIF---SRDI 324 (406)
T ss_dssp HHHHH---HHHC
T ss_pred hhhhh---hHHh
Confidence 66543 5664
No 81
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.14 E-value=0.0045 Score=60.66 Aligned_cols=240 Identities=12% Similarity=0.047 Sum_probs=112.3
Q ss_pred HHHHHHHHhhcCCC--CChHHHHHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHH
Q 038994 82 EALITAELSTAFPG--DGGFVIWADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVST 159 (471)
Q Consensus 82 ~a~~~~el~~~~p~--~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (471)
..+.+-|++.|+-. .-+..+-.++.+|+++++...-...+........+....+.-++..++ .+.....++..
T Consensus 25 ~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g-----~~~~~~~~~~~ 99 (358)
T PF01566_consen 25 LKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG-----IPLWIWVLLVA 99 (358)
T ss_pred HHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcHHHHHHHH
Confidence 47778888888764 356677778888998888887777776666666666666655555542 22233333332
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhh-ccccCC----Ccc-ccCCCCCCCchhHHHHHHHHHhhhhhhh
Q 038994 160 CILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAI-PKIKPH----RWF-SSGQKGLKKDWNLFFNTLFWNLNFWDNV 233 (471)
Q Consensus 160 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~af~G~e~~ 233 (471)
+....+-+...+...+++.++.++..+..+.+....+ .+.+.. .+. |..+. ..++.......-.....++..
T Consensus 100 ~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~--~~~~~~~valiGttv~p~~lf 177 (358)
T PF01566_consen 100 VIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPG--PGSLLFAVALIGTTVMPHNLF 177 (358)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcc--hhHHHHHHHHHHHhhhHHHHH
Confidence 3333332212334555555555544444333322222 222221 121 11111 011111111110111111111
Q ss_pred h--hhh-hhccCCC---cc--hhHHHH---HHHHHHHHHHHHHHHHHHhccc-CCcccccccHHHHHHHHhhh-HHHHHH
Q 038994 234 S--TLA-GEVDRPQ---KT--FPVALL---VAVIFTCVAYLIPLFAVIGAVN-VDQSQWDSGFHATAAEMIAG-KWLKIW 300 (471)
Q Consensus 234 ~--~~~-~E~k~p~---k~--ip~ai~---~~~~~~~~~y~l~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~-~~~~~~ 300 (471)
. +.. |+-.+.+ ++ .+..-. .+.++..++-..+......... .+....+.....+..+...| ++...+
T Consensus 178 ~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~~~~~L~~~~G~~~a~~l 257 (358)
T PF01566_consen 178 LHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQAAQALEPLLGSPWARYL 257 (358)
T ss_pred HHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHhcCchHHHHh
Confidence 1 111 2221221 11 222222 2222211111111111112222 22112233445667777778 788888
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 038994 301 LEVGAVLSAIGLFEAQLSSSAYQILGMA 328 (471)
Q Consensus 301 ~~~~~~~~~~~s~~~~~~~~sR~l~~~a 328 (471)
+.++.+.+.+++..+...+.++.+-..-
T Consensus 258 F~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 258 FAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHHHHHHhhHHHhccccceehHhhh
Confidence 8888888888888888877777765543
No 82
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.11 E-value=0.011 Score=61.44 Aligned_cols=139 Identities=8% Similarity=-0.090 Sum_probs=85.4
Q ss_pred ccccccchhHHHHHHHhhcc--cccCChhHHHhhChHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 038994 31 KSKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLY--ALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRA 106 (471)
Q Consensus 31 ~~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~--~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 106 (471)
-.|++++|-......++.++ ...+.++.....|... ..+++.++.+ ..++.+++.-++... -..++|.++.
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~----~~~~~~~p~~rr~~~-~T~~e~l~~R 104 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYV----LLALLLAPYLRKFGK-YTVPDFIGDR 104 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHCCC-ccHHHHHHHH
Confidence 46899999988877777766 3567777666666432 2233333221 235667777777754 4899999999
Q ss_pred hCCh-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 038994 107 FGPF-FGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAV 178 (471)
Q Consensus 107 ~g~~-~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 178 (471)
||++ ...+++....+......+......+..++..++. +.+...++. ..+.......-|.|...+...
T Consensus 105 f~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi--~~~~~iii~--~~i~~iYt~~GG~~aV~~TD~ 173 (552)
T TIGR03648 105 YYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV--DFETGVFIG--MAIVFFYAVLGGMKGVTWTQV 173 (552)
T ss_pred hCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHH--HHHHHHHHHhhhHHHHHHHHH
Confidence 9854 6888777776666666667777777777766652 112222222 223334444467776655433
No 83
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=98.07 E-value=5.2e-05 Score=76.63 Aligned_cols=161 Identities=15% Similarity=0.092 Sum_probs=88.2
Q ss_pred cccccccchhHHHHHHHhhcc-cccCChhHHHhh--ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 038994 30 IKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKAA--GPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRA 106 (471)
Q Consensus 30 ~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~--G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 106 (471)
+.+|+-++++.+.+=++..+. ..+.++...... +....+++.+++.++..++.++ .+.++.++-.+ .....|..
T Consensus 4 ~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~-~~~~G~r~Gl~--~~v~sR~~ 80 (440)
T PF02133_consen 4 ESERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVAL-MGIIGPRTGLP--TMVLSRAS 80 (440)
T ss_dssp -GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHH-HTHHHHCC-----HHHHTTTT
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHH-hcccccccCCC--chhcchhc
Confidence 356777888888776665543 223333332222 3334455555555543333333 45555555433 66677778
Q ss_pred hCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCC------------ChhHHHHHHHHHHHHHHHhhccchhhH
Q 038994 107 FGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLES------------GWPRSLAIMVSTCILSFLNFTGLTIVG 174 (471)
Q Consensus 107 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~~~~ 174 (471)
||.+.+.+...+..+..+...+.+....++.+....+...+ ....++..+++-++.....+.|.+...
T Consensus 81 FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l~ 160 (440)
T PF02133_consen 81 FGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKALR 160 (440)
T ss_dssp S-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99988888888888887777788888888888776554311 122334444444556667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038994 175 YAAVLLGLVSLSPFIIMSL 193 (471)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~ 193 (471)
+++.+...+.....+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~ 179 (440)
T PF02133_consen 161 RLAVIAAPILLVVFIGMLI 179 (440)
T ss_dssp HHHHCCHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHhhhhheeE
Confidence 8877665554443333333
No 84
>PRK10484 putative transporter; Provisional
Probab=98.05 E-value=0.022 Score=58.82 Aligned_cols=289 Identities=15% Similarity=0.072 Sum_probs=134.2
Q ss_pred cccccccchhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHh
Q 038994 30 IKSKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAF 107 (471)
Q Consensus 30 ~~~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 107 (471)
.-.|++++|-..+-..++..+ ...+.++.....|.....+.+ ...+..+..++.++.--++. +.-..++|.++.|
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~--~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ry 111 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEV--TAAIALIILALIFLPRYLKS-GITTIPDFLEERY 111 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHH--HHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhc
Confidence 346899999877777777666 467777777766754322221 22211222344444443443 2347899999999
Q ss_pred CChhHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhccc---cC-CChh-HHHHHHH-HHHHHHHHhhccchhhHHHHHHH
Q 038994 108 GPFFGSLMGSWKFLSGVIN-IAAFPVLCIDYLKKVIHP---LE-SGWP-RSLAIMV-STCILSFLNFTGLTIVGYAAVLL 180 (471)
Q Consensus 108 g~~~g~~~g~~~~~~~~~~-~a~~~~~~~~~~~~~~~~---~~-~~~~-~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~ 180 (471)
|++.....+....+.+... .+......+..++..+.. .+ +... .++..++ ..+.......-|.|...+...+=
T Consensus 112 g~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~iQ 191 (523)
T PRK10484 112 DKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTIN 191 (523)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 9877665555554444332 222223333333332210 11 1111 1111111 12224444456777666544433
Q ss_pred HHHHHHHHH---HHHHHhhcc------------ccCCCccccCCCCCCCchhHHHHHHHH-Hhhhh---hhhhhhhhhcc
Q 038994 181 GLVSLSPFI---IMSLAAIPK------------IKPHRWFSSGQKGLKKDWNLFFNTLFW-NLNFW---DNVSTLAGEVD 241 (471)
Q Consensus 181 ~~~~~~~~~---~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-af~G~---e~~~~~~~E~k 241 (471)
.++.++..+ ++.+..... .+++.+...+.......|...+..... .+.++ ....+-.=-.|
T Consensus 192 ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qR~~aak 271 (523)
T PRK10484 192 GIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIVQRALGAK 271 (523)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHhCC
Confidence 333222221 221111110 112222221111111223322222111 11111 11122222346
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHH---HHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038994 242 RPQKTFPVALLVAVIFTCVAYLIPLF---AVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLS 318 (471)
Q Consensus 242 ~p~k~ip~ai~~~~~~~~~~y~l~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 318 (471)
|+ |+..|+..++.....+.+..... ......|. +..++|..+..+..+..+++...++.+..+.+..++..+.++
T Consensus 272 ~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~-~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l~ 349 (523)
T PRK10484 272 NL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGD-GLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFLN 349 (523)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 77888887776554443333221 11222232 234455667777777777777766666666666766666666
Q ss_pred hhHHH
Q 038994 319 SSAYQ 323 (471)
Q Consensus 319 ~~sR~ 323 (471)
+.+-.
T Consensus 350 s~st~ 354 (523)
T PRK10484 350 SASTL 354 (523)
T ss_pred HHHHH
Confidence 55433
No 85
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.05 E-value=0.024 Score=58.90 Aligned_cols=145 Identities=12% Similarity=0.039 Sum_probs=80.9
Q ss_pred ccccccchhHHHHHHHhhcc--cccCChhHHHhhChHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 038994 31 KSKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYAL--LGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRA 106 (471)
Q Consensus 31 ~~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~--~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 106 (471)
-.|++++|.......++..+ +..+.++.....|..... +++.++. ....+.++|--++.-. -...+|.++.
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~g~~~~~----~i~~~~~a~~lrr~g~-~T~~d~l~~R 139 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSLGFLVGW----PIILFLIAERLRNLGR-YTFADVASYR 139 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH----HHHHHHHHHHHHHcCC-ccHHHHHHHH
Confidence 35888888776666666555 456777766666653322 2222211 1224445665555543 4677788888
Q ss_pred hC-ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 038994 107 FG-PFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVS 184 (471)
Q Consensus 107 ~g-~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 184 (471)
|+ +....+.+....+.............+..++..++. +.+...+ +...+.......-|.|...+.+.+=.++.
T Consensus 140 f~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi--~~~~~ii--i~~~i~~~Yt~~GGm~av~~td~iQ~~im 214 (549)
T TIGR02711 140 LKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL--NYHVAVV--LVGILMVMYVLFGGMLATTWVQIIKAVLL 214 (549)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 97 556777777666655555566666677777766552 1122212 22223334444567777666655433333
No 86
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=98.01 E-value=0.019 Score=56.53 Aligned_cols=62 Identities=19% Similarity=0.061 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCCC-C-ChHHHHHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 038994 81 PEALITAELSTAFPG-D-GGFVIWADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVI 142 (471)
Q Consensus 81 ~~a~~~~el~~~~p~-~-Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (471)
+.++..-|++.++-. + -|.-.-.++.++|++++.......+......-.+....+.-++.++
T Consensus 59 l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 59 LMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 346666777776553 2 3466777788888888877766666666666566655665555554
No 87
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=98.00 E-value=0.0062 Score=61.39 Aligned_cols=258 Identities=15% Similarity=0.102 Sum_probs=136.8
Q ss_pred HHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 038994 122 SGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKP 201 (471)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (471)
+.+++.+....+..+-+....|... -....+++++++....+.-+|....++.-.-...+=+..+..+++..+.+. |
T Consensus 105 DgviTPAISVlSAvEGl~v~~p~~~--~~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF~~l~~~G~~~I~~~-p 181 (534)
T PF02705_consen 105 DGVITPAISVLSAVEGLEVATPSLE--PYVVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWFLTLGVLGLYNIIQH-P 181 (534)
T ss_pred ceeecchHHHHHHhhhhhccCCCCc--ceehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhC-H
Confidence 4666677777777777766666543 123456666777778888888887777654433333334444444444332 2
Q ss_pred CCccccCCCC-----CCCchhH--HHHHHHHHhhhhhhhhhhhhhccC-CCcchhHHHHHHHHHH-HHHHHHHHHHHHhc
Q 038994 202 HRWFSSGQKG-----LKKDWNL--FFNTLFWNLNFWDNVSTLAGEVDR-PQKTFPVALLVAVIFT-CVAYLIPLFAVIGA 272 (471)
Q Consensus 202 ~~~~~~~~~~-----~~~~~~~--~~~~~~~af~G~e~~~~~~~E~k~-p~k~ip~ai~~~~~~~-~~~y~l~~~~~~~~ 272 (471)
+-+...++.. ...++.+ .+.+.+-+.+|-|+.-. |+-+ .+|++.++-..-+.-+ .+-|+--... +..
T Consensus 182 ~Vl~A~nP~yai~f~~~~~~~~~~~LG~V~L~~TGaEALyA---DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~-ll~ 257 (534)
T PF02705_consen 182 EVLKALNPYYAIRFFIRNGWIGFFVLGAVFLCVTGAEALYA---DMGHFGRKPIRIAWFFLVFPALLLNYFGQGAL-LLS 257 (534)
T ss_pred HHHHHhCHHHHHHHHHHcCCchhhhcchHHHHHhhHHHHHh---hhccccchhhhhhHHHHHHHHHHHHHccHHHH-HHc
Confidence 2111111100 0112222 23356678899997643 3333 3355655554422222 2223322222 221
Q ss_pred ccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhhccCCC-C---Cc
Q 038994 273 VNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPK-FFGLRSKKF-N---TP 347 (471)
Q Consensus 273 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~r~-~---~P 347 (471)
-| +...+|+..+. +++..+.+.+.+.++.+-...+.+.++--+..+.-+-|.+|+ ...+++++. | .|
T Consensus 258 ~p----~~~~npFf~~~----P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP 329 (534)
T PF02705_consen 258 HP----EAVSNPFFLLI----PEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIP 329 (534)
T ss_pred Cc----chhhhHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEech
Confidence 11 11234444333 445555555555555554555555566666777778899995 333344432 2 24
Q ss_pred -HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038994 348 -WVGILVSTLITLGVSYMDFESIVASANFLYSLGMLLEFAAFIWLRMK 394 (471)
Q Consensus 348 -~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (471)
+|-+++..++...+.+-+-+.+.++..+.....+.++-+.+...-++
T Consensus 330 ~vNw~L~i~~i~vvl~F~~S~~la~AYGiAVt~tM~iTT~L~~~v~~~ 377 (534)
T PF02705_consen 330 EVNWLLMIGVIAVVLGFRSSSNLAAAYGIAVTGTMLITTILLFLVMRR 377 (534)
T ss_pred HHHHHHHHHHHhhheEECChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555567888999988888888887776554443333
No 88
>PRK09395 actP acetate permease; Provisional
Probab=97.95 E-value=0.036 Score=57.60 Aligned_cols=142 Identities=11% Similarity=-0.007 Sum_probs=79.6
Q ss_pred ccccccchhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhC
Q 038994 31 KSKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFG 108 (471)
Q Consensus 31 ~~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g 108 (471)
-.|++++|.......++..+ ...+.++.....|.... +. .+...+......+.+++--++.. .-..++|.++.||
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~-~~-~~~~~~g~~~~~~~~~~~~r~~g-~~T~~d~l~~Ryg 143 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGL-IY-SIGFLVGWPIILFLIAERLRNLG-KYTFADVASYRLK 143 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHH-HH-HHHHHHHHHHHHHHHHHHHhhCC-CccHHHHHHHHcC
Confidence 45889998877766666666 45777777776675332 11 11111111112333344333332 2457778889998
Q ss_pred -ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHH
Q 038994 109 -PFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVL 179 (471)
Q Consensus 109 -~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 179 (471)
+....+.+....+.............+..++..++. +.+.. +.+...+.......-|.|...+...+
T Consensus 144 s~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi--~~~~~--ili~~~i~~iYt~~GGm~av~~TD~i 211 (551)
T PRK09395 144 QGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGL--NYHVA--VVLVGVLMMVYVLFGGMLATTWVQII 211 (551)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHH--HHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 457888888777666666666777777777766542 11111 22222333444455678876655543
No 89
>PLN00149 potassium transporter; Provisional
Probab=97.46 E-value=0.062 Score=56.46 Aligned_cols=256 Identities=16% Similarity=0.079 Sum_probs=128.3
Q ss_pred HhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 038994 123 GVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKPH 202 (471)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (471)
.+.+.+....+..+=++...|....++....+++++++..+.+.-+|+...++.-.-...+=++.+..+++..+.+.+|.
T Consensus 170 gvlTPAISVLSAVeGl~v~~~~~~~~~vvv~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~ 249 (779)
T PLN00149 170 GVLTPAISVFSAVSGLELSMSKEHHKYVEVPVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWNPH 249 (779)
T ss_pred cccchhHHHHHHhhcccccCCCccCCceehHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHh
Confidence 44445555555555554444322222333457777888888888899888877665444444444555556666555544
Q ss_pred CccccCCC--------CCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHH-HHHHHHHHHHHHhcc
Q 038994 203 RWFSSGQK--------GLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFT-CVAYLIPLFAVIGAV 273 (471)
Q Consensus 203 ~~~~~~~~--------~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~-~~~y~l~~~~~~~~~ 273 (471)
-+...++. +...+|. .+.+.+-+.+|-|+.-.--+-. .+|.+..+-..-+.=+ .+-|+.-... +..-
T Consensus 250 Vl~AlnP~y~~~f~~~~~~~g~~-~LGgV~L~iTG~EALyADlGHF--~~~~Ir~aw~~~V~P~L~L~Y~GQaA~-l~~~ 325 (779)
T PLN00149 250 VYQALSPYYMYKFLKKTQRGGWM-SLGGILLCITGSEAMFADLGHF--SQLSIKIAFTSLVYPSLILAYMGQAAY-LSKH 325 (779)
T ss_pred HhhhcCHHHHHHHHHHCCCceeE-eecchhhcccchhhhhhcccCC--CccceeeeehhhHHHHHHHHhhhHHHH-HhcC
Confidence 32222211 0011111 1234566788999753322222 2344545543333322 2234433222 2222
Q ss_pred cCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhhccCC-CC-C--c-
Q 038994 274 NVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPK-FFGLRSKK-FN-T--P- 347 (471)
Q Consensus 274 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~r-~~-~--P- 347 (471)
| +...+-.+|+... .++++.+-+.+.+.++.+-.-.+.+.++-.+..+.-+-|.+|+ ..-+++++ +| . |
T Consensus 326 p-~~~~~~~~pFy~~----iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~ 400 (779)
T PLN00149 326 H-VIESDYRIGFYVS----VPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPE 400 (779)
T ss_pred c-chhccccCcHHHh----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHH
Confidence 2 2122223344332 3444555555555555544445555555566666677899994 22333332 22 2 3
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Q 038994 348 WVGILVSTLITLGVSYMDFESIVASANFLYSLGMLLEFAA 387 (471)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 387 (471)
+|-+++..+++..+.+-+-..+.++..+.....++++-+.
T Consensus 401 vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L 440 (779)
T PLN00149 401 INWTLMLLCLAVTVGFRDTKRLGNASGLAVITVMLVTTCL 440 (779)
T ss_pred HHHHHHHHHHhheeEecChHHHHHHhhhhhehHHHHHHHH
Confidence 3444444444444446677888888877666666555443
No 90
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=97.39 E-value=0.039 Score=57.36 Aligned_cols=256 Identities=15% Similarity=0.066 Sum_probs=132.4
Q ss_pred HHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 038994 122 SGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKP 201 (471)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (471)
+.+++.+....+..+=++...|....+ ....+++++++....+.-+|....|+.-.-...+=++.+.++++..+.+.+|
T Consensus 140 DgviTPAiSVLSAVeGl~v~~p~~~~~-~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P 218 (688)
T TIGR00794 140 DGVLTPAISVLSAVSGLEIVAPSLSDT-WVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNP 218 (688)
T ss_pred ccccccchhhhhhhccccccCCCCCCC-eehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCH
Confidence 345555555555555555545544222 3345666777778888888988888776544444445555565655555344
Q ss_pred CCccccCCCC-----CCCchhH--HHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHH-HHHHHHHHHHHHHHhcc
Q 038994 202 HRWFSSGQKG-----LKKDWNL--FFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVI-FTCVAYLIPLFAVIGAV 273 (471)
Q Consensus 202 ~~~~~~~~~~-----~~~~~~~--~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~-~~~~~y~l~~~~~~~~~ 273 (471)
.-+...++.. ...++.+ .+.+.+-+.+|-|+.-.--+-. .+|++..+-..-+. ...+-|+.-...+. .-
T Consensus 219 ~Vl~AlnP~ya~~f~~~~~~~~~~~LG~V~L~iTGaEALyADmGHF--g~~~Ir~aw~~~V~P~L~LnY~GQgA~ll-~~ 295 (688)
T TIGR00794 219 EVLKALSPYYAVQFFIEYGTVGWVSLGGVVLSITGVEAMFADLGHF--GKLPIQLAWFTFVYPSLILCYIGQAAYLS-KH 295 (688)
T ss_pred HHHhHhCHHHHHHHHHHCCCceeeeccchhheeccHhhhhcccCCC--CcccceeehHHHHHHHHHHHHcchHHHHh-cC
Confidence 3222111110 0012222 2334567888999753322222 23445555442222 22223443322222 11
Q ss_pred cCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhhccCC-C-CC--c-
Q 038994 274 NVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPK-FFGLRSKK-F-NT--P- 347 (471)
Q Consensus 274 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~r-~-~~--P- 347 (471)
| + ...+|+... .+++..+.+.+.+.++.+-.-.+.+.++-.+..+.-+-|.+|+ ...+++++ + +. |
T Consensus 296 p-~---~~~NpFf~~----~P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~ 367 (688)
T TIGR00794 296 P-E---AIKNPFFLS----IPDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPF 367 (688)
T ss_pred c-c---hhcCcHHHh----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHH
Confidence 2 1 123454433 3445555555555555555455555556666667778899994 33444443 2 32 3
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038994 348 WVGILVSTLITLGVSYMDFESIVASANFLYSLGMLLEFAAFI 389 (471)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 389 (471)
+|-+++..++...+.+-+-+.+.++..+.....++++-+.+.
T Consensus 368 vNw~Lmv~~i~vvl~F~~S~~la~AYGiaVt~tM~iTT~L~~ 409 (688)
T TIGR00794 368 VNWLLMLGVIAVTAGFRDTNNLGAAYGIAVTGTFLVTTCLMT 409 (688)
T ss_pred HHHHHHHHHHheeEEecChHHHHHHhhhhhhhhhHHHHHHHH
Confidence 334444444444444667788888888777777666654443
No 91
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=97.28 E-value=0.0012 Score=61.24 Aligned_cols=354 Identities=14% Similarity=0.111 Sum_probs=176.0
Q ss_pred ccccccccchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCC-----CChHHH
Q 038994 29 TIKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAE-LSTAFPG-----DGGFVI 101 (471)
Q Consensus 29 ~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~e-l~~~~p~-----~Gg~y~ 101 (471)
.+.+.+++-|++.--+-..+-| -+.++|.++..+|. +.+.+.+..+.++.. ++-...| +-..-|. --..|.
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGy-w~i~amvg~A~vCcy-TGk~Li~CLYE~~~dGevVrvRdsYv 188 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGY-WSIGAMVGVAYVCCY-TGKLLIECLYENGEDGEVVRVRDSYV 188 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcch-hHHHHHHhhhhhhhc-cchhhhhhhccCCCCCcEEEeehhHH
Confidence 3455778888887766666656 46788887777776 444444444443222 2222222 1111110 012344
Q ss_pred HHHHH-hCChhH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChh-HHHHHHHHHHHHHHHhhccchhhHHHHH
Q 038994 102 WADRA-FGPFFG-SLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWP-RSLAIMVSTCILSFLNFTGLTIVGYAAV 178 (471)
Q Consensus 102 ~~~~~-~g~~~g-~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 178 (471)
-..+. ++|..| -.+.-........++..+....++.++.-+|+.+-... +..++-+.++-... +...|...++..
T Consensus 189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~F--Lk~Lk~VS~lSf 266 (524)
T KOG4303|consen 189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSF--LKDLKIVSRLSF 266 (524)
T ss_pred HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHH--HHHHHHHHHHHH
Confidence 44444 777775 56666777778888888888899999999987542211 11222222222211 245677777776
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCccccCCCCCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHH
Q 038994 179 LLGLVSLSPFIIMSLAAIPKIKPHRWFSSGQKGLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFT 258 (471)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~ 258 (471)
.-+.-+++.=+++....+.....-.|....+.-....+.-.+...+|+|+..--.+++-+.||||++ +-.-+-|+-+..
T Consensus 267 ~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~-Fn~Ml~WsHIAA 345 (524)
T KOG4303|consen 267 FCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQ-FNVMLKWSHIAA 345 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhH-heeeeehHHHHH
Confidence 6666555543333333333322222322211100111111122346788887778889999999965 667777888887
Q ss_pred HHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHhcCCCc
Q 038994 259 CVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGL----FEAQLSSSAYQILGMADLGFLP 334 (471)
Q Consensus 259 ~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~~~~sR~l~~~a~d~~lP 334 (471)
.++=.+...........+.-. .+.+..-+.....++.++..+-.+-| .-+..-..-|.++.-..+-.+|
T Consensus 346 aVfK~~Fg~~~fLTf~~~Tqe-------vItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fp 418 (524)
T KOG4303|consen 346 AVFKVVFGMLGFLTFGELTQE-------VITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFP 418 (524)
T ss_pred HHHHHHHHHheeeeechhhHH-------HHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCc
Confidence 777666555544333322100 00000001111111222211111111 1111122334444433444455
Q ss_pred hhhh---hccCCCCCcHHHHHHHHHHHHHhhccCHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhC
Q 038994 335 KFFG---LRSKKFNTPWVGILVSTLITLGVSYMDFESIVASAN--FLYSLGMLLEFAAFIWLRMKK 395 (471)
Q Consensus 335 ~~~~---~~~~r~~~P~~a~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 395 (471)
..++ ++.. ++.-.+..++..-+-..+...-|..++.+.. .+...+++..++-.++++.|.
T Consensus 419 scys~Dg~Lk~-WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~ 483 (524)
T KOG4303|consen 419 SCYSPDGSLKE-WGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT 483 (524)
T ss_pred eeeCCCcchhh-heeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh
Confidence 4432 3333 5555544443333333333445555555443 356677787777766665554
No 92
>PLN00148 potassium transporter; Provisional
Probab=97.21 E-value=0.062 Score=56.43 Aligned_cols=251 Identities=16% Similarity=0.080 Sum_probs=125.9
Q ss_pred HhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 038994 123 GVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKPH 202 (471)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (471)
.+.+.+....+..+=++...|....+ ....+++++++..+.+.-+|+...+++-.-...+=++.+..+++..+.+.+|.
T Consensus 170 gvlTPAISVLSAVeGl~v~~p~~~~~-~vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~ 248 (785)
T PLN00148 170 GVLTPAISVLSSVSGLQVTETKLTDG-ELVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPK 248 (785)
T ss_pred cccchhHHHHHHhccceecCCCCCCC-eehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHH
Confidence 45555555555555555444543222 23456667777788888889888887665444444444555556666555444
Q ss_pred CccccCCC--------CCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHH-HHHHHHHHHHHHhcc
Q 038994 203 RWFSSGQK--------GLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFT-CVAYLIPLFAVIGAV 273 (471)
Q Consensus 203 ~~~~~~~~--------~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~-~~~y~l~~~~~~~~~ 273 (471)
-+...++. +...+|. .+.+.+-+.+|-|+.-.--+-. .+|.+.++-..-+.=+ .+-|+.-... +..-
T Consensus 249 Vl~AlnP~y~~~ff~~~~~~g~~-~LGgV~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~L~L~Y~GQaA~-ll~~ 324 (785)
T PLN00148 249 IIHALSPYYIIKFFRVTGKDGWI-SLGGILLSITGTEAMFADLGHF--TAASIRLAFATVIYPCLVVQYMGQAAF-LSKN 324 (785)
T ss_pred HhhhcCHHHHHHHHHhCCCceEE-eecchheeccchhhhhhhccCC--CccceEEeeeehHHHHHHHHHcchHHH-HhcC
Confidence 32222111 0011111 2334566788999753322222 2344544443332222 2224333222 2221
Q ss_pred cCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhhccCC-CCC---c-
Q 038994 274 NVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPK-FFGLRSKK-FNT---P- 347 (471)
Q Consensus 274 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~r-~~~---P- 347 (471)
| + ...+|+... .+++..+-+.+.+.++.+-.-.+.+.++-.+..+.-+-|.+|+ ..-+++++ +|. |
T Consensus 325 p-~---~~~npFf~~----iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~ 396 (785)
T PLN00148 325 I-P---SIPNSFYDS----IPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPE 396 (785)
T ss_pred c-c---cccCcHHHh----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHH
Confidence 2 1 123444332 3444555555555555544444555555566666677899994 23334443 232 4
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Q 038994 348 WVGILVSTLITLGVSYMDFESIVASANFLYSLGMLLEFA 386 (471)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 386 (471)
+|-+++..++...+.+-+-..+.++..+.....++++-+
T Consensus 397 vNw~Lmv~~i~vv~~F~~s~~la~AYGiAV~~vM~iTT~ 435 (785)
T PLN00148 397 INWILMILTLAVTIGFRDTTLIGNAYGLACMTVMFITTF 435 (785)
T ss_pred HHHHHHHHHHHhheeeccchhHHHhhhhheeeHHHHHHH
Confidence 344444455555454666777877777665555554443
No 93
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=97.20 E-value=0.024 Score=57.95 Aligned_cols=256 Identities=16% Similarity=0.079 Sum_probs=131.5
Q ss_pred HHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 038994 122 SGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKP 201 (471)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (471)
+.+++.+....+..+=++...|...+ ....+++++++....+.-+|....|+.-.-...+=++.+.++++..+.+ +|
T Consensus 116 DgvITPAISVLSAVEGL~v~~p~l~~--~Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~~i~~~Gi~~I~~-~P 192 (622)
T PRK10745 116 EVVITPAISVMSAIEGLEIVAPQLDT--YIVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLTLAVLGLRSIIA-NP 192 (622)
T ss_pred ccccchhHHHHHHhhcccccCCCCCC--ccHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHhc-CH
Confidence 46666666666666666655665422 2456677777788888888888887766544444444445555555543 23
Q ss_pred CCccccCCCC-----CCCchhH--HHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHH-HHHHHHHHHHHHHHhcc
Q 038994 202 HRWFSSGQKG-----LKKDWNL--FFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVI-FTCVAYLIPLFAVIGAV 273 (471)
Q Consensus 202 ~~~~~~~~~~-----~~~~~~~--~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~-~~~~~y~l~~~~~~~~~ 273 (471)
+-+...++.. ...++.+ .+.+.+-+.+|-|+.-.--+.. .+|++.++-..-+. ...+-|+--...++. -
T Consensus 193 ~Vl~AlnP~ya~~f~~~~~~~gf~~LG~V~L~vTGaEALYADmGHF--G~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~-~ 269 (622)
T PRK10745 193 EVLHALNPMWAVHFFLEYKTVSFFALGAVVLAITGVEALYADMGHF--GKFPIRLAWFTVVLPSLVLNYFGQGALLLK-N 269 (622)
T ss_pred HHHhHhCHHHHHHHHHhCCCceEEEecceeeeccchHHHhhccCCC--CccceeeeehhhHHHHHHHHhcchHHHHhc-C
Confidence 2211111100 0001111 1233556778999753322222 33555555443333 223334433333221 1
Q ss_pred cCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhhccCC--CCC--c-
Q 038994 274 NVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPK-FFGLRSKK--FNT--P- 347 (471)
Q Consensus 274 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~r--~~~--P- 347 (471)
| + ...+|+..+ .+++..+.+.+.+.++.+-.-.+.+.++-.+..+.-+-|.+|+ ...+.+++ .+. |
T Consensus 270 p-~---~~~NpFf~~----~P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~ 341 (622)
T PRK10745 270 P-E---AIKNPFFLL----APDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPF 341 (622)
T ss_pred c-h---hhcCcHHHh----CChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHH
Confidence 1 1 224555443 3344455555555555444444555555566666678899994 33344443 233 3
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038994 348 WVGILVSTLITLGVSYMDFESIVASANFLYSLGMLLEFAAFIWL 391 (471)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 391 (471)
+|-+++..++...+.+-+.+.+.++..+.....+.++-+.+...
T Consensus 342 vNw~Lmv~~i~~vl~F~sS~~La~AYGiAVt~tM~iTT~L~~~v 385 (622)
T PRK10745 342 VNWLLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTV 385 (622)
T ss_pred HHHHHHHHHHeeEEEecCchHHHHHhhhhheeHhHHHHHHHHHH
Confidence 33344444444444456778888888777666666665544444
No 94
>PLN00151 potassium transporter; Provisional
Probab=97.12 E-value=0.043 Score=57.63 Aligned_cols=252 Identities=14% Similarity=0.044 Sum_probs=123.9
Q ss_pred HhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 038994 123 GVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKPH 202 (471)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (471)
.+.+.+....+..+=++...|....+ ....+++++++..+.+.-+|+...+++-.-...+=++.+..+++..+.+.+|.
T Consensus 247 GvlTPAISVLSAVeGL~v~~p~l~~~-~VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p~ 325 (852)
T PLN00151 247 GVLTPAMSVMSAVSGLKVGVPGFGQD-AVVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDSS 325 (852)
T ss_pred cccccchhhhhhhccccccCCcCCCC-eehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHH
Confidence 34444444444444444444443222 33456677777888888889888887665444444444555556666555443
Q ss_pred CccccCCC--------CCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHH-HHHHHHHHHHHHhcc
Q 038994 203 RWFSSGQK--------GLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFT-CVAYLIPLFAVIGAV 273 (471)
Q Consensus 203 ~~~~~~~~--------~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~-~~~y~l~~~~~~~~~ 273 (471)
-+...++. +...+|. .+.+++-+.+|-|+.-.--+-. .+|.|..+-..-+.=+ .+-|+--... +..-
T Consensus 326 Vl~AlnP~Y~~~Ff~~~~~~gw~-~LGgVvLciTGaEALfADLGHF--g~~sIqiaw~~~V~P~LlL~Y~GQaA~-L~~~ 401 (852)
T PLN00151 326 VFRAFNPVYIYYFFKRNSTKAWS-ALGGCVLCATGSEAMFADLGYF--SVRSIQLAFTCLVLPCLLLAYMGQAAY-LMKN 401 (852)
T ss_pred HHhhhCHHHHHHHHHhCCCceEE-EecceeeeeccchhhhcccCCC--CccceeeeehhhHHHHHHHHHcchHHH-HhcC
Confidence 22222111 1011221 1233456778988743322222 2344544443322222 2223332222 2211
Q ss_pred cCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhhccCC-CCC---c-
Q 038994 274 NVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPK-FFGLRSKK-FNT---P- 347 (471)
Q Consensus 274 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~r-~~~---P- 347 (471)
| + ...+|+.. ..++++.+-+.+.+.++.+-.-.+.+.++-.++.+.-+-|.+|+ ..-+++++ +|. |
T Consensus 402 p-~---~~~npFy~----svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~ 473 (852)
T PLN00151 402 P-D---SAEQIFFS----SVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPV 473 (852)
T ss_pred c-c---cccCcHHH----hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHH
Confidence 2 1 12334322 23444555555555555444444555555566666677799994 23333433 332 3
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Q 038994 348 WVGILVSTLITLGVSYMDFESIVASANFLYSLGMLLEFAA 387 (471)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 387 (471)
+|-+++..+++..+.+-+-..+.++..+.....++++-+.
T Consensus 474 vNw~Lmv~~i~v~l~F~~s~~l~~AYGiAV~~vM~iTT~L 513 (852)
T PLN00151 474 INWFLLVMCLVVVCSFRSITDIGNAYGIAEVGVMMVSTIL 513 (852)
T ss_pred HHHHHHHHHHhheeeecCHHHHHHHhhhhhhhhhhHHHHH
Confidence 3444444444444446677888888777666666555443
No 95
>PLN00150 potassium ion transporter family protein; Provisional
Probab=97.05 E-value=0.054 Score=56.78 Aligned_cols=252 Identities=15% Similarity=0.082 Sum_probs=123.0
Q ss_pred HhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 038994 123 GVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKPH 202 (471)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (471)
.+.+.+....+..+=++...|....+ ....+++++++..+.+.-+|+...++.-.-...+=++.+..+++..+.+.+|.
T Consensus 187 gviTPAISVLSAVeGL~v~~p~l~~~-~Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~ 265 (779)
T PLN00150 187 GILTPSISVLSAVVGIKAASSGLDTN-LVTIISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLALIGCYNIIKWDKS 265 (779)
T ss_pred cccccchhhhhhhccccccCCCCCCC-eehhhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHH
Confidence 33444444444444444444443222 23456667777788888888888777665444444444555556655555443
Q ss_pred CccccCCC--------CCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHH-HHHHHHHHHHHHhcc
Q 038994 203 RWFSSGQK--------GLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFT-CVAYLIPLFAVIGAV 273 (471)
Q Consensus 203 ~~~~~~~~--------~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~-~~~y~l~~~~~~~~~ 273 (471)
-+...++. +...+|. .+.+.+-+.+|-|+.-.--+-. .+|.+..+-..-+.=+ .+-|+.-...+. .-
T Consensus 266 Vl~AlnP~y~~~ff~~~~~~g~~-~LG~V~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~LlL~Y~GQaA~ll-~~ 341 (779)
T PLN00150 266 VFLAFNPLYIVSFFIRNGRQGWE-SLGGIVLCMTGTEAMFADLGHF--TVKSMQIAFTSLVYPCLLLTYLGQAAYLV-KH 341 (779)
T ss_pred HHhhcCHHHHHHHHHhCCCceEE-EecceeeeecchhhhhccccCC--CccceeeeehhhHHHHHHHHHcchHHHHh-cC
Confidence 22222111 0011111 1233456778999753322222 2344545543222222 222333322222 11
Q ss_pred cCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhhccCC-CC-C--c-
Q 038994 274 NVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPK-FFGLRSKK-FN-T--P- 347 (471)
Q Consensus 274 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~r-~~-~--P- 347 (471)
| + ...+|+... .++++.+-+.+.+.++.+-.-.+.+.++-.+..+.-+-|.+|+ ..-+++++ +| . |
T Consensus 342 p-~---~~~npFf~~----iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~ 413 (779)
T PLN00150 342 M-E---DVNDPFYRS----LPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPE 413 (779)
T ss_pred c-c---cccCcHHHh----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHH
Confidence 2 1 123344332 3444555555555555544445555555566666677899994 23333332 23 2 3
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Q 038994 348 WVGILVSTLITLGVSYMDFESIVASANFLYSLGMLLEFAA 387 (471)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 387 (471)
+|-+++..++...+.+-+-..+.++..+.....++++-+.
T Consensus 414 vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L 453 (779)
T PLN00150 414 INWILMVLCLVITAGFRDTDEIGNAYGIAVVGVMIITTCL 453 (779)
T ss_pred HHHHHHHHHHhheEEecChHHHHHHhhhheehhhHHHHHH
Confidence 3333444444444445677788888777666665555433
No 96
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=96.46 E-value=1.2 Score=45.15 Aligned_cols=116 Identities=13% Similarity=0.155 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC--CChHHHHHHHHhCChhHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHh
Q 038994 68 LLGFMIFPFIWSIPEALITAELSTAFPG--DGGFVIWADRAFGPFFGSLMGSWKFLSGVINIAAF----PVLCIDYLKKV 141 (471)
Q Consensus 68 ~~~~~i~~~i~~~~~a~~~~el~~~~p~--~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~----~~~~~~~~~~~ 141 (471)
+.+|.+-++. +++.++.+ ..+..|- +...|....+...+..|.+.-....++-+...+.. ......-++..
T Consensus 133 ~~~Wa~Y~~~-~l~~ay~~--y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~ 209 (485)
T PF02028_consen 133 FHAWAIYALV-GLAIAYFF--YNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSL 209 (485)
T ss_dssp HHHHHHHHHH-HHHHHHHH--HTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHheee--eecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4445555543 44344433 3344443 44555555554444456555555555444433332 22233334444
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHhhccc----hhhHHHHHHHHHHHHH
Q 038994 142 IHPLESGWPRSLAIMVSTCILSFLNFTGL----TIVGYAAVLLGLVSLS 186 (471)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~ 186 (471)
++-.++...+..+.+++..+++.-...|+ |..++++.......++
T Consensus 210 ~Gi~~~~~~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~ 258 (485)
T PF02028_consen 210 FGIPNTFGLQIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLL 258 (485)
T ss_dssp CTSSSTHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 43322333344444445555555555555 4555555544444333
No 97
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.65 Score=46.76 Aligned_cols=302 Identities=16% Similarity=0.113 Sum_probs=140.3
Q ss_pred HHHHHHHhhcCCC--CChHHHHHH---HHhCChhHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhH
Q 038994 83 ALITAELSTAFPG--DGGFVIWAD---RAFGPFFGS------LMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPR 151 (471)
Q Consensus 83 a~~~~el~~~~p~--~Gg~y~~~~---~~~g~~~g~------~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 151 (471)
..-|.-+.-+--+ .||...... +..+++..+ +.+-...-+.+++.+....+..+-+...-|.+. ...
T Consensus 71 TiKYv~~vlRADN~GEGGilsL~aL~~~~~~~~~~~l~~~g~iGaalf~GD~vITPAiSVlSAvEGL~iv~p~~~--~~V 148 (627)
T COG3158 71 TIKYVLFVLRADNNGEGGILSLMALARRAAPRRTALLIILGLIGAALFYGDAVITPAISVLSAVEGLEIVTPALD--PYV 148 (627)
T ss_pred HHhhheeEEecCCCCCchhhhHHHHHHhhcCCCchhhhhHHHHhHHHHhcccccchhHHHHHHhccccccCcccc--Ccc
Confidence 4445444444333 588877544 444433222 333333334566666666666666655555433 234
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCCC-----CCCchhHH--HHHHH
Q 038994 152 SLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKPHRWFSSGQKG-----LKKDWNLF--FNTLF 224 (471)
Q Consensus 152 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~ 224 (471)
..+++++++....+.-+|....+++-.-.+.+=+..+...++..+.. +++-....++.. ...++.++ +...+
T Consensus 149 vpitl~IL~~LF~iQ~~GT~~Vg~~FGPVm~lWF~~l~~~Gl~~i~~-~p~IL~AiNP~yAi~fl~~~~~~gf~vLGaVf 227 (627)
T COG3158 149 VPITLIILVLLFLIQRFGTGRVGKLFGPVMLLWFLALAVLGLINIID-DPEILRAINPYYAVHFLLEEGFVGFFVLGAVF 227 (627)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhhhccHHHHHHHHHHHHHHHHHhc-CHHHHHHhChHHHHHHHHhCCceEEEEeeeee
Confidence 45666677777888888888777765433333333333333332221 111111111000 00111221 12244
Q ss_pred HHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHH
Q 038994 225 WNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVG 304 (471)
Q Consensus 225 ~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 304 (471)
-+.+|-|+.-.--+.. -+|++-+|=..-.. --++..+.-.+..-..+-....+|+..++ +.+.-+-+.+.
T Consensus 228 LavTGaEALYADmGHf--Gr~pI~~AWf~vv~----P~L~LNY~GQGA~vL~~p~a~~npFF~~~----P~~aliP~viL 297 (627)
T COG3158 228 LAVTGAEALYADMGHF--GRKPIRVAWFFVVL----PCLLLNYFGQGALLLSNPEAIGNPFFLLA----PDWALIPLVIL 297 (627)
T ss_pred eeeccHHHHHhhcccc--CCccHHHHHHHHHH----HHHHHHHccccceeccCcccccCcHHHhC----hhhHHHHHHHH
Confidence 5677888753322222 23555444332222 11122222112111112222334544333 33333323333
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhhccCC-CC---Cc-HHHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Q 038994 305 AVLSAIGLFEAQLSSSAYQILGMADLGFLPK-FFGLRSKK-FN---TP-WVGILVSTLITLGVSYMDFESIVASANFLYS 378 (471)
Q Consensus 305 ~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~r-~~---~P-~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 378 (471)
+..+.+-...+.+.++--+..+--|-|.+|+ ...+.+++ .| .| +|-+++..++...+.+-+-+.+.....+...
T Consensus 298 AT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiAVT 377 (627)
T COG3158 298 ATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIAVT 377 (627)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChhee
Confidence 3333332333333344444555567899994 33444443 23 35 3444444444444446677888888877777
Q ss_pred HHHHHHHHHHHHHHhhCCC
Q 038994 379 LGMLLEFAAFIWLRMKKPQ 397 (471)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~ 397 (471)
..+.++-+.+...-+++.+
T Consensus 378 gtM~iTt~L~~~~~~~~w~ 396 (627)
T COG3158 378 GTMVITTILLTVVMRKKWK 396 (627)
T ss_pred ehhHHHHHHHHHHHHHhcC
Confidence 7776666555555455443
No 98
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.36 E-value=1.2 Score=44.05 Aligned_cols=310 Identities=12% Similarity=0.075 Sum_probs=160.6
Q ss_pred cccCChhHHHhhCh--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhC-ChhHHHHHHHHHHHHhhHH
Q 038994 51 GPYGEEPAVKAAGP--LYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFG-PFFGSLMGSWKFLSGVINI 127 (471)
Q Consensus 51 ~~~~~~~~~~~~G~--~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g-~~~g~~~g~~~~~~~~~~~ 127 (471)
+.+++++.+...|- ....++|..+=.+ ..+..+|--+++-+- ..-++....++ +...++++....+......
T Consensus 61 SflGiag~I~~~GYdG~~Y~iG~~~Gy~i----~~fL~A~~LRk~Gky-T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~Yl 135 (529)
T COG4147 61 SFLGIAGLIFISGYDGLIYSIGWTGGYPI----LLFLIAEYLRKLGKY-TFADFIADRYKSNPARLLAAIGTIIVSFLYL 135 (529)
T ss_pred hhhchhHhhhhcccchHHHHHHHHHHHHH----HHHHHHHHHHhcCCc-chHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 34555555554331 2445555554332 467788888887654 34455555554 5667777777666666666
Q ss_pred HHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccc--cCCC--
Q 038994 128 AAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKI--KPHR-- 203 (471)
Q Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-- 203 (471)
.......+..+..+++. .....+.++..+......+-|.|.+.+.|.+=.++.+...++..+....+. ++..
T Consensus 136 iaQmvGaG~li~~l~gv----~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~ 211 (529)
T COG4147 136 IAQMVGAGLLISLLLGV----PYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLF 211 (529)
T ss_pred HHHHHhhHHHHHHHhCC----CceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHH
Confidence 66666677777666653 223333344445555666678888887776444443333333332222211 1110
Q ss_pred ---------c---cccCCCCCCCchhHHHHHHHHHhhhhhhhhhhhhhcc-CC-CcchhHHHHHHHHHHHHHHHHHHHHH
Q 038994 204 ---------W---FSSGQKGLKKDWNLFFNTLFWNLNFWDNVSTLAGEVD-RP-QKTFPVALLVAVIFTCVAYLIPLFAV 269 (471)
Q Consensus 204 ---------~---~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k-~p-~k~ip~ai~~~~~~~~~~y~l~~~~~ 269 (471)
. ...++.....++..++...+--..|.-..+|.--..= -| .|+-.|...+++..++.+|+.....-
T Consensus 212 ~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig 291 (529)
T COG4147 212 AEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIG 291 (529)
T ss_pred HHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111111234455555555445667777776542221 12 25666788888999999998775443
Q ss_pred H----hcc--cCC-------------cc-----cccccHHHHHHHHhh-hHHHHHHHHHHHHHHHHHH----HHHHHhhh
Q 038994 270 I----GAV--NVD-------------QS-----QWDSGFHATAAEMIA-GKWLKIWLEVGAVLSAIGL----FEAQLSSS 320 (471)
Q Consensus 270 ~----~~~--~~~-------------~~-----~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~s----~~~~~~~~ 320 (471)
. .+. |.. .. ...+........... +++...++....+...+++ .++.-.+.
T Consensus 292 ~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasav 371 (529)
T COG4147 292 AGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAV 371 (529)
T ss_pred HHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2 111 111 00 001222344455555 4555555555544443332 33444466
Q ss_pred HHHHHHHHhcCCCchhhhhccCCCCCcHHHHHHHHHHHHHhhccCHHHHHHHHH
Q 038994 321 AYQILGMADLGFLPKFFGLRSKKFNTPWVGILVSTLITLGVSYMDFESIVASAN 374 (471)
Q Consensus 321 sR~l~~~a~d~~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~~~~~l~~~~~ 374 (471)
++-+|.+--|+- .++.++ -+.-..++....+++..+.......+..+..
T Consensus 372 sHDiY~~vik~~----ase~~~-v~vaRi~~v~~~vva~~lgi~~~gnVaflVa 420 (529)
T COG4147 372 SHDLYAMVIKKG----ATEKKE-VRVARIAVVILGVVAILLGILPPGNVAFLVA 420 (529)
T ss_pred HhHHHHHHhCCC----CCccce-ehhHHHHHHHHHHHHHHheecCCccHHHHHH
Confidence 777777655543 223222 4455666677777777666544334444333
No 99
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=95.52 E-value=2.4 Score=40.61 Aligned_cols=278 Identities=13% Similarity=0.066 Sum_probs=145.7
Q ss_pred ccccccchhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHHHHHHH-HHH-HHHHHHHHHhhcCCCCChHHHHHHHH
Q 038994 31 KSKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFMIFPFI-WSI-PEALITAELSTAFPGDGGFVIWADRA 106 (471)
Q Consensus 31 ~~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~i~~~i-~~~-~~a~~~~el~~~~p~~Gg~y~~~~~~ 106 (471)
..|+++.+-+.+.-.++-++ +..+=|++...-|-.+++++.+=.-.. +++ ..+--++.+++++. +=..-++.++.
T Consensus 37 gnRsmgg~VlAmt~~aTYisaSSFigGpgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~n-AltI~D~l~~R 115 (473)
T COG4145 37 GNRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYN-ALTINDLLFAR 115 (473)
T ss_pred ccCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhC-CeeHHHHHHHH
Confidence 35778777666655555555 345555555555655555443322110 010 11334455666653 33566666655
Q ss_pred -hCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchh---hHHHHHHHHH
Q 038994 107 -FGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTI---VGYAAVLLGL 182 (471)
Q Consensus 107 -~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~ 182 (471)
-++...++++....+.....+.+.-...+..++...+- +....+....+ .+.....+-|-|. +..+|.....
T Consensus 116 Y~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi---dY~tgL~ifa~-~V~iYt~fGGFRAvvltD~IQG~vml 191 (473)
T COG4145 116 YQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI---DYTTGLLIFAV-SVAIYTAFGGFRAVVLTDTIQGLVML 191 (473)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC---CchhhHHHHHH-HHHHHHhhcceeeeehHHHHHHHHHH
Confidence 46778999999988888888888888888888777542 12222221111 1222333345554 4455544333
Q ss_pred HHHHHHHHHHHHhh----------ccccCCCccccCCCCCCCchhHHHHHHHHHhhhhh-----hhhhhhhhccCCCcch
Q 038994 183 VSLSPFIIMSLAAI----------PKIKPHRWFSSGQKGLKKDWNLFFNTLFWNLNFWD-----NVSTLAGEVDRPQKTF 247 (471)
Q Consensus 183 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e-----~~~~~~~E~k~p~k~i 247 (471)
+.-+.+.+-.+-.. ...|++-..|.+... ....-+-..+|-..|+. -...-.-..|| +|.+
T Consensus 192 igtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~---~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kD-skai 267 (473)
T COG4145 192 IGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADD---ILDPPFMASFWILVCFGVLGLPHTAVRCIAFKD-SKAI 267 (473)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcc---cccchHHHHHHHHHHHHHhcCcHHHHHHHhccc-hhHH
Confidence 32222222211111 122344344433221 12222223344444433 33333344577 5889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---hcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038994 248 PVALLVAVIFTCVAYLIPLFAVI---GAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSS 319 (471)
Q Consensus 248 p~ai~~~~~~~~~~y~l~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 319 (471)
.++++++.+++.++-+.+-.+-. .+.| ++...|.....++-+..+|....++...-+.+..++.++.+.-
T Consensus 268 h~gmiigt~vi~il~~gmhl~G~~graViP--dlt~~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~ 340 (473)
T COG4145 268 HRGMIIGTIVIAILMLGMHLAGALGRAVIP--DLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQ 340 (473)
T ss_pred hcCcchHHHHHHHHHHHHHHhhhhhhhhcC--CCCccchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877655544422 2233 3444566677777777777666555555555556666655443
No 100
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=95.45 E-value=1.9 Score=42.72 Aligned_cols=298 Identities=9% Similarity=0.036 Sum_probs=137.0
Q ss_pred CCCccccccccccchhHHHHHHHhhcc-cccCChhHHHhhCh--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 038994 24 TVATTTIKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKAAGP--LYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFV 100 (471)
Q Consensus 24 ~~~~~~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~--~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y 100 (471)
|.++.+..||+.++|+..++=.+..++ +-..+..+...-|- .-.+...+++=++ ...+.-+++ +.|..|
T Consensus 45 DL~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~-----~~~f~~lns---~~G~~y 116 (572)
T KOG2466|consen 45 DLKPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLF-----TAIFLVLNS---RPGSDY 116 (572)
T ss_pred CCCcCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHH-----HHHHHHHcc---CCCccc
Confidence 444556778999999999877665544 33444343333332 1112222222111 111222222 345566
Q ss_pred HH-----HHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-------cC-------CChhHHHHHHHHHHH
Q 038994 101 IW-----ADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHP-------LE-------SGWPRSLAIMVSTCI 161 (471)
Q Consensus 101 ~~-----~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~-------~~~~~~~~~~~~~~~ 161 (471)
+. .|..||-+.+-.---...+..+...+.++..+++.++.+++. .+ ....++...+++-++
T Consensus 117 hIsFpv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~ 196 (572)
T KOG2466|consen 117 HISFPVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVA 196 (572)
T ss_pred ccceeeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHH
Confidence 64 233455444443333444455555667777777777666432 11 112334444444444
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccccC--CCcc-ccCCCCCCCchhHHHHHHHHHhhhhhhhhhhhh
Q 038994 162 LSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKP--HRWF-SSGQKGLKKDWNLFFNTLFWNLNFWDNVSTLAG 238 (471)
Q Consensus 162 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~ 238 (471)
...+-+++.....++...-.+........+.++.+.+.+. +-+. +....++...|. ++.+....+.+|.....-+.
T Consensus 197 s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa-~~~~i~~~~~~fstl~~N~p 275 (572)
T KOG2466|consen 197 SLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWA-FVRSIMSCIANFSTLIVNAP 275 (572)
T ss_pred hhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHH-HHHHHHHHHhccchhhccCc
Confidence 4445556666666666555555544555555555554332 2122 222222233333 33455566677766555444
Q ss_pred hccCCCcchhHHHHHHHHHH-HHHHHHHHHHHHhcccC---Ccccc--cccHHHHHHHHhhh-------HHHHHHHHHHH
Q 038994 239 EVDRPQKTFPVALLVAVIFT-CVAYLIPLFAVIGAVNV---DQSQW--DSGFHATAAEMIAG-------KWLKIWLEVGA 305 (471)
Q Consensus 239 E~k~p~k~ip~ai~~~~~~~-~~~y~l~~~~~~~~~~~---~~~~~--~~~p~~~~~~~~~~-------~~~~~~~~~~~ 305 (471)
|..|=.| -|.+..++.+++ -+.+.+..+. +++.. +.+-. --+|+ +++++... .+...++..+.
T Consensus 276 DFsRF~k-sp~a~~~~Ql~alp~~~~l~~li--GVlv~sa~~~iYG~~~W~Pl-dil~~~l~~~y~~G~RAgvFfi~~~f 351 (572)
T KOG2466|consen 276 DFSRFAK-SPNAIWWGQLIALPLPFGLTPLI--GVLVTSASKIIYGTNYWSPL-DILNQWLDTNYSAGARAGVFFIGFGF 351 (572)
T ss_pred hhHhhcC-CCCccchhhhhhhhhhhhhhhhe--eeEehhhhhhhhcccccCHH-HHHHHHhccccccccchhhhHHHHHH
Confidence 4433222 123333333322 2222222221 11111 11111 12343 34444433 36677777777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhh
Q 038994 306 VLSAIGLFEAQLSSSAYQILGMADLGFLPKFFG 338 (471)
Q Consensus 306 ~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~ 338 (471)
.++.++...+.-..++ .+.-.+.+|+++.
T Consensus 352 ~laql~~NISan~vaa----gnDl~~L~Pkyin 380 (572)
T KOG2466|consen 352 ALAQLGTNISANSVAA----GNDLSALLPKYIN 380 (572)
T ss_pred HHHHHhcchhcccccc----chhhHhhCcceEE
Confidence 7787776543332222 1223356776654
No 101
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=94.69 E-value=6.2 Score=40.85 Aligned_cols=103 Identities=14% Similarity=0.154 Sum_probs=54.3
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhcc-ccCC----CccccCCC-CCCCchhHHHHHHHHHhh-hhhhhh
Q 038994 162 LSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPK-IKPH----RWFSSGQK-GLKKDWNLFFNTLFWNLN-FWDNVS 234 (471)
Q Consensus 162 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~-~~~~~~~~~~~~~~~af~-G~e~~~ 234 (471)
......+|+|..+|+......+..+.++++.+-.+.. +..+ .+.|+... ....-|..++...+|+.. |+....
T Consensus 191 v~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~i 270 (523)
T PF00209_consen 191 VFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMI 270 (523)
T ss_dssp HTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHH
T ss_pred HHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEE
Confidence 3444568999999987765554444333333333221 1100 11221111 012346677777888766 888888
Q ss_pred hhhhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 038994 235 TLAGEVDRPQKTFPVALLVAVIFTCVAYLIP 265 (471)
Q Consensus 235 ~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~ 265 (471)
.++.-.|+ ++|++|.............++.
T Consensus 271 t~~Sy~~~-~~n~~~~a~~v~~~~~~~slla 300 (523)
T PF00209_consen 271 TYGSYNKF-KNNIFRDALIVAFINTLVSLLA 300 (523)
T ss_dssp HHHTTS-T-TS-SHHHHHHHHHHHHHHHHTT
T ss_pred EEcCcCCC-CccccccceEEEcCchhhhHhH
Confidence 88887776 5778886666555554444333
No 102
>PRK09950 putative transporter; Provisional
Probab=94.04 E-value=8 Score=39.48 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Q 038994 297 LKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLG 331 (471)
Q Consensus 297 ~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~ 331 (471)
...++....++..+....+..-+.+..+-.++.+|
T Consensus 400 ~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g 434 (506)
T PRK09950 400 AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRN 434 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCC
Confidence 34444445555555555556666666666666655
No 103
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=93.34 E-value=0.28 Score=32.58 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=36.1
Q ss_pred cccCCchhHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038994 402 YRVPMKLPGLVIMCLIPSGFLVVIMVVATKIVYLVSGLMTLGAIGWYFFMKF 453 (471)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 453 (471)
||+|.-+. +..+.+...++.+...+..+++...+++++|+++|+.+.+
T Consensus 1 F~vP~vP~----~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~ 48 (51)
T PF13906_consen 1 FKVPLVPF----LPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGI 48 (51)
T ss_pred CCCCcccH----HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheee
Confidence 45666532 3334466777888889999999999999999999987644
No 104
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=91.40 E-value=14 Score=35.68 Aligned_cols=101 Identities=19% Similarity=0.152 Sum_probs=55.9
Q ss_pred cchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHHH
Q 038994 36 TLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGSL 114 (471)
Q Consensus 36 ~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~ 114 (471)
+.|-++..=+.++.| |+..=|.....-|+...++ |++.+.++.=..-=..+-+.|...+.-+.-..+++..|++.+.+
T Consensus 53 ~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~l-WI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~l 131 (376)
T PF02554_consen 53 NKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALL-WIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKL 131 (376)
T ss_pred chHHhhHHHHHHHhccccchHHHHHHHhcchHHHH-HHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHH
Confidence 445566666777777 4444444344467753332 44444322221111123333333334567778888999999888
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q 038994 115 MGSWKFLSGVINIAAFPVLCIDY 137 (471)
Q Consensus 115 ~g~~~~~~~~~~~a~~~~~~~~~ 137 (471)
.....++..+...+......++.
T Consensus 132 f~~f~~~~lilV~avF~~v~a~~ 154 (376)
T PF02554_consen 132 FLIFIFFLLILVIAVFADVVANT 154 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777776666555555444443
No 105
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=91.25 E-value=19 Score=36.80 Aligned_cols=35 Identities=9% Similarity=-0.048 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Q 038994 297 LKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLG 331 (471)
Q Consensus 297 ~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~ 331 (471)
+..++....++..+....+...+++..+-.++.+|
T Consensus 403 l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g 437 (504)
T PRK03356 403 LSTATMWGFFILCFIATVTLINACSYTLAMSTCRE 437 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCC
Confidence 34444444455555555566666777777777655
No 106
>PRK09928 choline transport protein BetT; Provisional
Probab=91.18 E-value=23 Score=37.52 Aligned_cols=92 Identities=7% Similarity=-0.016 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccCCCCCcHHHHHHHHHHHHHhhccCHHH---HHHHHH
Q 038994 298 KIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSKKFNTPWVGILVSTLITLGVSYMDFES---IVASAN 374 (471)
Q Consensus 298 ~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~~~~~---l~~~~~ 374 (471)
..++....++..+..+.+..-+.+-.+-.++.+|.-| ..-.+|+..=.++++...+-..++...+++. ...+..
T Consensus 408 ~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~---~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~a 484 (679)
T PRK09928 408 FTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDI---NSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMG 484 (679)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCC---CCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3334444444444444455556666666666655322 1111223333444443333333333334443 334444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038994 375 FLYSLGMLLEFAAFIWLR 392 (471)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~ 392 (471)
+-..+..++.++++++.-
T Consensus 485 lPf~~I~ll~~~sl~k~l 502 (679)
T PRK09928 485 LPFSFVIFFVMAGLYKSL 502 (679)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555556655543
No 107
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=89.60 E-value=27 Score=35.96 Aligned_cols=119 Identities=13% Similarity=0.218 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhccccC-CCc----cccCCC-CCCCchhHHHHH
Q 038994 149 WPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSPFIIMSLAAIPKIKP-HRW----FSSGQK-GLKKDWNLFFNT 222 (471)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~-~~~~~~~~~~~~ 222 (471)
|...+..+++.+++....+.|.|.+||+..+.+..-.+.+.++.+-++.-.+. ... ++.... -....|..+...
T Consensus 252 ~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtq 331 (629)
T KOG3659|consen 252 WTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQ 331 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHH
Confidence 44455666666677788889999999986555544433333332333211111 110 110000 013345555555
Q ss_pred HHHHh-hhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 038994 223 LFWNL-NFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLIPLFA 268 (471)
Q Consensus 223 ~~~af-~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~ 268 (471)
.+++. .|+......+.-.|- +.|.=|=.+...++..+.+++..++
T Consensus 332 iffslg~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfv 377 (629)
T KOG3659|consen 332 IFFSLGPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFV 377 (629)
T ss_pred HHhhcCccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHH
Confidence 66653 488887777766443 3444443333334444444444433
No 108
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=88.31 E-value=28 Score=34.44 Aligned_cols=37 Identities=8% Similarity=-0.118 Sum_probs=26.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 038994 285 HATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSA 321 (471)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s 321 (471)
.....+...|+....++.+..+.+..+|..+..++..
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~ 318 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQ 318 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445566777877888888888887777777766444
No 109
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=85.90 E-value=44 Score=34.14 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=46.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCchhhhhccCCCCCcHHHHHHHHHHHHHhhcc
Q 038994 286 ATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLG-FLPKFFGLRSKKFNTPWVGILVSTLITLGVSYM 364 (471)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~-~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~ 364 (471)
..+++....-+...+..+..++....-..+...+.+-++-.++..| .=|+.+-| -.++++...+-..++...
T Consensus 392 ~alf~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r-------~~W~v~~~~ia~~lL~~g 464 (537)
T COG1292 392 TALFQVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVR-------VFWGVLIGLIAAVLLLIG 464 (537)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHH-------HHHHHHHHHHHHHHHHhC
Confidence 3444433333344444444444444444555667777777777655 22222222 123333222222222233
Q ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 038994 365 DFESI---VASANFLYSLGMLLEFAAFIWLRMKK 395 (471)
Q Consensus 365 ~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (471)
+++.+ .-+..+-..+..++.+.++++--+++
T Consensus 465 gl~aLqt~~ii~alPF~~vll~~~~sl~k~l~~d 498 (537)
T COG1292 465 GLEALQTAAIITALPFSLVLLVMMFSLIKDLKQD 498 (537)
T ss_pred CHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhh
Confidence 43333 33344445555555566666554433
No 110
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=77.48 E-value=48 Score=32.99 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhcC
Q 038994 308 SAIGLFEAQLSSSAYQILGMADLG 331 (471)
Q Consensus 308 ~~~~s~~~~~~~~sR~l~~~a~d~ 331 (471)
+.+++..+..++.|+.+..+=.|+
T Consensus 67 G~i~s~f~i~YG~sKf~~G~~sDr 90 (448)
T COG2271 67 GILGSAFSITYGVSKFVMGVLSDR 90 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccc
Confidence 445556666778888888877775
No 111
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=73.66 E-value=1.3e+02 Score=31.94 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=44.5
Q ss_pred cchhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCChHHHHH
Q 038994 36 TLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELST-AFPGDGGFVIWA 103 (471)
Q Consensus 36 ~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~-~~p~~Gg~y~~~ 103 (471)
+..+.+.-.+|..+| .+.-+|....+.|.++.++.+++..+++.+|.-+ .|++- ++-+.|..-.|=
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~--LE~slGQf~~~g~v~~wr 107 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFF--LEMSLGQFTSQGPVSVWR 107 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHH--HHHHHhhhhcCChHHHHH
Confidence 446666666666666 3666777766655557888888888877887554 66654 566666776663
No 112
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=72.68 E-value=1.1e+02 Score=30.88 Aligned_cols=19 Identities=5% Similarity=0.298 Sum_probs=11.8
Q ss_pred cccccchhHHHHHHHhhcc
Q 038994 32 SKKLTLIPLIFLIYFEVAG 50 (471)
Q Consensus 32 ~r~l~~~~~~~~~~~~~iG 50 (471)
|.+++.++=+++.+++-+|
T Consensus 34 kPefS~~sW~aMlf~aG~G 52 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMG 52 (453)
T ss_pred CCCCcchHHHHHHHHHhhh
Confidence 4566666666666666555
No 113
>COG4025 Predicted membrane protein [Function unknown]
Probab=68.25 E-value=22 Score=31.68 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=13.1
Q ss_pred hhHHHHHHHHhcCCCc
Q 038994 319 SSAYQILGMADLGFLP 334 (471)
Q Consensus 319 ~~sR~l~~~a~d~~lP 334 (471)
..-|-++.+.||+.+|
T Consensus 55 ~~ve~v~e~~re~~i~ 70 (284)
T COG4025 55 SKVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 4567888999999987
No 114
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=64.22 E-value=1.9e+02 Score=30.24 Aligned_cols=108 Identities=10% Similarity=0.001 Sum_probs=58.6
Q ss_pred cccccchhHHHHHHHhhccc--ccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CChHHHHHHHHhC
Q 038994 32 SKKLTLIPLIFLIYFEVAGG--PYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPG-DGGFVIWADRAFG 108 (471)
Q Consensus 32 ~r~l~~~~~~~~~~~~~iG~--~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~g 108 (471)
-|++.+|-..+--+++.+|+ ..++|....+-|-....+.|..... .+ ..+|.-+=-.+.. -...|.|.+..||
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~--~~--~~~~~f~Pvf~~~~v~~~~eYl~~Rf~ 119 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALLS--VL--LLGWIFIPVFYRLGVTTMYEYLEKRFG 119 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHHH--HH--hhheEEEEEEEecCeeehhHHHHHHhc
Confidence 47788877766555555664 5788887777665433333222211 11 2222222222222 3678999999999
Q ss_pred ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Q 038994 109 PFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIH 143 (471)
Q Consensus 109 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (471)
+....+....+.+..........+.-+..++...+
T Consensus 120 ~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg 154 (585)
T KOG2349|consen 120 GRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG 154 (585)
T ss_pred ccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc
Confidence 88555555444444444444444445555555443
No 115
>COG4146 Predicted symporter [General function prediction only]
Probab=61.89 E-value=1.6e+02 Score=28.70 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=33.8
Q ss_pred hHHHHHHHHhCChhHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHhcc
Q 038994 98 GFVIWADRAFGPFFGSLMGSWKFLSG-VINIAAFPVLCIDYLKKVIH 143 (471)
Q Consensus 98 g~y~~~~~~~g~~~g~~~g~~~~~~~-~~~~a~~~~~~~~~~~~~~~ 143 (471)
..-++.++.|.+.-.-+...+..+.| ....+...++.+-.++..++
T Consensus 104 TIPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~ 150 (571)
T COG4146 104 TIPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFH 150 (571)
T ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhc
Confidence 45678999999998888888877765 44456666677777777764
No 116
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=61.65 E-value=1e+02 Score=31.05 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 038994 434 YLVSGLMTLGAIGWYFFMKFLKSKNV 459 (471)
Q Consensus 434 ~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (471)
........+.++..|++.|+..||++
T Consensus 199 p~~i~~i~~iai~h~fwqr~~Dkk~~ 224 (455)
T PRK09804 199 PVASCVIISVAISHFFVQRAFDKKDK 224 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456677788888999888877764
No 117
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=59.41 E-value=2.4e+02 Score=29.93 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=26.3
Q ss_pred HHhhhhhhhhhhhhhccCC--CcchhHHHHHHHHHHHHHHHHHHHHHH
Q 038994 225 WNLNFWDNVSTLAGEVDRP--QKTFPVALLVAVIFTCVAYLIPLFAVI 270 (471)
Q Consensus 225 ~af~G~e~~~~~~~E~k~p--~k~ip~ai~~~~~~~~~~y~l~~~~~~ 270 (471)
+.+...+.+..+..|.|-- -|.-||.+..+.++.+++-.++.....
T Consensus 442 ~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~ 489 (624)
T PF03169_consen 442 YGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVM 489 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777776643 255666666666655555544444443
No 118
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=59.02 E-value=1.1e+02 Score=31.34 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHhccccCCChhHH
Q 038994 79 SIPEALITAELSTAFPGDGGFVIWADRAFGPFFGSLMGSWKF------LSGVINIAAFPVLCIDYLKKVIHPLESGWPRS 152 (471)
Q Consensus 79 ~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (471)
....+.+|...+.++.+.........+.+....++++-.... +.|.=.....+...++.+++. +.+..
T Consensus 307 F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~------~~~~~ 380 (502)
T PF03806_consen 307 FLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSL------GLPGI 380 (502)
T ss_pred HHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhc------CCCcH
Confidence 444688999999999999999999999887776666544322 222222334455566666554 13344
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHH
Q 038994 153 LAIMVSTCILSFLNFTGLTIVGYAAV 178 (471)
Q Consensus 153 ~~~~~~~~~~~~~~~~g~~~~~~~~~ 178 (471)
...+.+.++...+|++=...++|-..
T Consensus 381 ~l~i~fill~a~iNLfi~S~SaKWai 406 (502)
T PF03806_consen 381 PLIIGFILLTAFINLFIGSASAKWAI 406 (502)
T ss_pred HHHHHHHHHHHHHHHhhhcchhhHHH
Confidence 55556777788889886666666553
No 119
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=55.95 E-value=84 Score=27.90 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhhc
Q 038994 441 TLGAIGWYFFMKFLKSK 457 (471)
Q Consensus 441 ~~~g~~~~~~~~~~~~~ 457 (471)
+++|.+.+..+++.|||
T Consensus 184 iiig~i~~~~~~~lkkk 200 (206)
T PF06570_consen 184 IIIGVIAFALRFYLKKK 200 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444333333
No 120
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=53.58 E-value=2.3e+02 Score=27.91 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=52.0
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 038994 101 IWADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAV 178 (471)
Q Consensus 101 ~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 178 (471)
..+++.+|+.-+.+.+-...+....+.......+++|+....+. .+...+.+...+....+...|.+..-++..
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k----~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~ 332 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK----LSYKTWVIVFTLFSFIVANLGLTQIISISI 332 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 56778999999999999988888888888888899999888764 333333333444444555566666555544
No 121
>PF14007 YtpI: YtpI-like protein
Probab=49.95 E-value=1.1e+02 Score=23.08 Aligned_cols=24 Identities=8% Similarity=0.094 Sum_probs=17.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 038994 428 VATKIVYLVSGLMTLGAIGWYFFM 451 (471)
Q Consensus 428 ~~~~~~~~~~~~~~~~g~~~~~~~ 451 (471)
..+....+++.+.+++|..-.+..
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~~G 77 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLFAG 77 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHH
Confidence 455667788888888888766544
No 122
>PTZ00206 amino acid transporter; Provisional
Probab=48.97 E-value=3.1e+02 Score=27.95 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=44.2
Q ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhh
Q 038994 283 GFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFG 338 (471)
Q Consensus 283 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~ 338 (471)
..+.++.+...|++..+++.+...+..++...+++...+..+...-++...|++++
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 35788888888999999999999999999999999888887776655444455554
No 123
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=45.05 E-value=3.1e+02 Score=27.64 Aligned_cols=72 Identities=11% Similarity=0.241 Sum_probs=54.2
Q ss_pred HHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 038994 102 WADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAV 178 (471)
Q Consensus 102 ~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 178 (471)
.+.+.+|+....+.+.+.++....+......+++++++..++ .....+.+++.++...+.-.|.+..-++..
T Consensus 270 ~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-----isY~~~v~i~~l~S~~lSn~G~~~II~~s~ 341 (439)
T PRK15433 270 YVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-----LSYRTLVFILGGFSMVVSNLGLSQLIQISV 341 (439)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CcHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 567789999999999999999999888999999999988875 233444555556666666677665555544
No 124
>PHA03049 IMV membrane protein; Provisional
Probab=44.56 E-value=37 Score=23.64 Aligned_cols=20 Identities=5% Similarity=-0.064 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 038994 439 LMTLGAIGWYFFMKFLKSKN 458 (471)
Q Consensus 439 ~~~~~g~~~~~~~~~~~~~~ 458 (471)
-..++|+++|.++++++..+
T Consensus 11 CVaIi~lIvYgiYnkk~~~q 30 (68)
T PHA03049 11 CVVIIGLIVYGIYNKKTTTS 30 (68)
T ss_pred HHHHHHHHHHHHHhcccccC
Confidence 34567778888876655443
No 125
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=43.62 E-value=7.7 Score=35.55 Aligned_cols=16 Identities=6% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHH
Q 038994 344 FNTPWVGILVSTLITL 359 (471)
Q Consensus 344 ~~~P~~a~~~~~~~~~ 359 (471)
--.|...+.+..++..
T Consensus 76 LLCPLGlLCiilimi~ 91 (381)
T PF05297_consen 76 LLCPLGLLCIILIMIV 91 (381)
T ss_dssp ----------------
T ss_pred hcCcchHHHHHHHHHH
Confidence 3457666654444433
No 126
>PF14256 YwiC: YwiC-like protein
Probab=42.36 E-value=1.9e+02 Score=23.57 Aligned_cols=21 Identities=19% Similarity=0.687 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 038994 375 FLYSLGMLLEFAAFIWLRMKK 395 (471)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~ 395 (471)
...+..|....-....+|.|+
T Consensus 32 ~aw~~~yl~~~p~~~~~k~r~ 52 (129)
T PF14256_consen 32 LAWLFGYLAFYPFLLWLKQRR 52 (129)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 445556665555556665554
No 127
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=41.47 E-value=2.9e+02 Score=25.59 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=38.6
Q ss_pred HhhhHHHHHHHHhcCCCchhhhhccCCCCCcHHHHHHHHHHHHHhhccC-H-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 038994 317 LSSSAYQILGMADLGFLPKFFGLRSKKFNTPWVGILVSTLITLGVSYMD-F-----ESIVASANFLYSLGMLLEFAAFIW 390 (471)
Q Consensus 317 ~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~~-~-----~~l~~~~~~~~~~~~~~~~~~~~~ 390 (471)
...+.|.+ .|.|.-.+.+.+.++ ++.|.+.++...+...+..... . +.+..-........|.+..++...
T Consensus 177 ~~l~~~il---~r~~~~~~~~~~~~~-~~lP~~~~~~~i~~~~~~l~~~~~~~~~~~~i~~Nl~~v~~~l~~~qGla~~~ 252 (290)
T PF09991_consen 177 YYLARRIL---RRLGIPIPPLPPFRE-WRLPRWLIWLLIVALALSLVGGGFGGSWLQIIGLNLLIVLSFLFFIQGLAVIH 252 (290)
T ss_pred HHHHHHHH---HHcCCCCCCCCchHH-HhCcHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 344433233444444 8899998877655554443322 1 222222223444555566666655
Q ss_pred HHhhCCCCC
Q 038994 391 LRMKKPQLK 399 (471)
Q Consensus 391 ~~~~~~~~~ 399 (471)
..-++++.+
T Consensus 253 ~~~~~~~~~ 261 (290)
T PF09991_consen 253 FFLKRRKMS 261 (290)
T ss_pred HHHHHcCCc
Confidence 544443333
No 128
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=41.06 E-value=3.4e+02 Score=26.26 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=22.8
Q ss_pred hhhhhhhccCCC----cchhHHHHHHHHHHHHHHHHHHHH
Q 038994 233 VSTLAGEVDRPQ----KTFPVALLVAVIFTCVAYLIPLFA 268 (471)
Q Consensus 233 ~~~~~~E~k~p~----k~ip~ai~~~~~~~~~~y~l~~~~ 268 (471)
....++++.+++ .+.|+++.++++.+.-.-++...+
T Consensus 28 L~~~~~~ig~~~~D~~~~T~~al~~tll~alp~pl~~~~~ 67 (340)
T PF12794_consen 28 LERIAKRIGKVRQDSFSHTPRALLLTLLLALPLPLLLLAI 67 (340)
T ss_pred HHHHHHHcCCccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554 459999999988766554444333
No 129
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=40.97 E-value=38 Score=29.79 Aligned_cols=34 Identities=15% Similarity=0.355 Sum_probs=25.0
Q ss_pred hhhhhhccCCC-cchhHHHHHHHHHHHHHHHHHHH
Q 038994 234 STLAGEVDRPQ-KTFPVALLVAVIFTCVAYLIPLF 267 (471)
Q Consensus 234 ~~~~~E~k~p~-k~ip~ai~~~~~~~~~~y~l~~~ 267 (471)
.---|-..||| |++||+++.+.+...++-+....
T Consensus 201 gGTIEGfHDPKFKr~p~~vias~vaS~~~gii~v~ 235 (240)
T PRK00968 201 GGTIEGFHDPKFKRWPRAVIASFVASLVCGIVAVL 235 (240)
T ss_pred CceeecCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 33457788998 99999999998877666554433
No 130
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=40.90 E-value=2.4e+02 Score=24.47 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 038994 350 GILVSTLITLG 360 (471)
Q Consensus 350 a~~~~~~~~~~ 360 (471)
++++..+++++
T Consensus 101 sLl~lg~~aLl 111 (226)
T COG4858 101 SLLFLGAMALL 111 (226)
T ss_pred cHHHHHHHHHH
Confidence 44555555544
No 131
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=37.39 E-value=72 Score=29.60 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 038994 433 VYLVSGLMTLGAIGWYFFMKFLKSKNV 459 (471)
Q Consensus 433 ~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (471)
..++.+++.++-+++|.|.+|+||+.|
T Consensus 264 aalvllil~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 264 AALVLIILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334444555666677777666666655
No 132
>PTZ00370 STEVOR; Provisional
Probab=36.26 E-value=76 Score=29.53 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 038994 433 VYLVSGLMTLGAIGWYFFMKFLKSKNV 459 (471)
Q Consensus 433 ~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (471)
..++.+++.++-+++|.|.+|+||+.|
T Consensus 260 aalvllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 260 AALVLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 334444555666667766666666654
No 133
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=35.49 E-value=72 Score=22.40 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 038994 438 GLMTLGAIGWYFFMKFLKSKN 458 (471)
Q Consensus 438 ~~~~~~g~~~~~~~~~~~~~~ 458 (471)
+-..++|.++|..+++.+..+
T Consensus 10 ICVaii~lIlY~iYnr~~~~q 30 (68)
T PF05961_consen 10 ICVAIIGLILYGIYNRKKTTQ 30 (68)
T ss_pred HHHHHHHHHHHHHHhcccccC
Confidence 334567778888776655443
No 134
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=35.37 E-value=4.8e+02 Score=26.25 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=55.0
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 038994 101 IWADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAV 178 (471)
Q Consensus 101 ~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 178 (471)
..+++.+|+....+.+-+..+....+......++++|+++.++. .....+.+++.++...+.-.|.+..-++..
T Consensus 265 ~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k----isY~~~v~i~~i~S~~ian~Gl~~Ii~~s~ 338 (427)
T PF05525_consen 265 QIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPK----ISYKVWVIIFTIFSFIIANLGLDQIIKISV 338 (427)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cChHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 35667899999999999999999888888899999999999883 233344444555666666677766555554
No 135
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=34.26 E-value=1.8e+02 Score=24.92 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHHHHHHHHHH
Q 038994 63 GPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGSLMGSWKFL 121 (471)
Q Consensus 63 G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~ 121 (471)
+....+++++..+++ ++..|+.|. ...+|.-|++.|..-|-..|.
T Consensus 66 t~~G~~igi~~~gv~-Si~aAllY~-------------~~l~k~~g~W~Gi~YG~~~W~ 110 (173)
T PF11085_consen 66 TWLGNLIGIVFIGVF-SIVAALLYY-------------ALLKKFKGPWPGILYGLAWWA 110 (173)
T ss_pred hhHHHHHHHHHHHHH-HHHHHHHHH-------------HHHHHhcccchHHHHHHHHHH
Confidence 333455565555553 665566553 344555567777766655544
No 136
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=33.68 E-value=1.5e+02 Score=20.17 Aligned_cols=24 Identities=4% Similarity=0.189 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccC
Q 038994 219 FFNTLFWNLNFWDNVSTLAGEVDR 242 (471)
Q Consensus 219 ~~~~~~~af~G~e~~~~~~~E~k~ 242 (471)
.+-+..|+|.|..+-.+.-+|.++
T Consensus 4 ~~~sVl~af~GVqs~~~~e~Df~~ 27 (56)
T PF11174_consen 4 VVKSVLWAFFGVQSSKNRERDFAQ 27 (56)
T ss_pred HHHHHHHHHhCcCcchhHHHHHHc
Confidence 345678999999988887777765
No 137
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion]
Probab=33.26 E-value=4e+02 Score=26.16 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=31.0
Q ss_pred hhHHHHHHHHhcCCCchhhhhccCCCCCcHHHHHHHHHHHHHhh
Q 038994 319 SSAYQILGMADLGFLPKFFGLRSKKFNTPWVGILVSTLITLGVS 362 (471)
Q Consensus 319 ~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~~ 362 (471)
+.+|++-...-|+.+-+.++|-=+--|.|+.-+...++++.+..
T Consensus 84 GfA~yM~~iga~~~~V~l~skPL~~ikspy~ll~~ay~i~~~m~ 127 (451)
T COG3069 84 GFARYMTHIGANDAVVKLASKPLKYIKSPYLLLIAAYFVACLMS 127 (451)
T ss_pred cHHHHHHHhChhHHHHHHHhchhhhhcccHHHHHHHHHHHHHHH
Confidence 45566666666666666666666657889999888888887765
No 138
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=33.00 E-value=57 Score=27.63 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=23.5
Q ss_pred hhhhccCCC-cchhHHHHHHHHHHHHHHHHHHH
Q 038994 236 LAGEVDRPQ-KTFPVALLVAVIFTCVAYLIPLF 267 (471)
Q Consensus 236 ~~~E~k~p~-k~ip~ai~~~~~~~~~~y~l~~~ 267 (471)
..|...||+ |+.||+++.+.+...+.-++..+
T Consensus 193 TIEGfHDPKfkk~pk~vias~vasil~~iia~l 225 (230)
T COG4060 193 TIEGFHDPKFKKLPKAVIASLVASILAGIIAVL 225 (230)
T ss_pred eeecccChhhhccchHHHHHHHHHHHHHHHHHH
Confidence 347778998 89999999888876665444433
No 139
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=30.23 E-value=3.8e+02 Score=24.81 Aligned_cols=20 Identities=10% Similarity=-0.027 Sum_probs=9.7
Q ss_pred hhHHHHHHHHhHHHHHHHHH
Q 038994 408 LPGLVIMCLIPSGFLVVIMV 427 (471)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~ 427 (471)
+....+.+.+....+++.+.
T Consensus 90 plvL~ing~ll~ll~lyAli 109 (314)
T COG3965 90 PLVLAINGTLLALLCLYALI 109 (314)
T ss_pred hhHhhhccHHHHHHHHHHHH
Confidence 34444455555555555444
No 140
>PRK11383 hypothetical protein; Provisional
Probab=29.15 E-value=3.3e+02 Score=22.49 Aligned_cols=18 Identities=6% Similarity=-0.046 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhhCCC
Q 038994 380 GMLLEFAAFIWLRMKKPQ 397 (471)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~ 397 (471)
.+.+...+.+...|..+|
T Consensus 47 vl~lglF~avs~QK~vRD 64 (145)
T PRK11383 47 VLVLGLFSAASYQKTVRD 64 (145)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333444445555444333
No 141
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.79 E-value=63 Score=25.99 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=4.7
Q ss_pred HHHHHHHHHHhh
Q 038994 445 IGWYFFMKFLKS 456 (471)
Q Consensus 445 ~~~~~~~~~~~~ 456 (471)
++.|+..|++||
T Consensus 83 li~y~irR~~Kk 94 (122)
T PF01102_consen 83 LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHS--
T ss_pred HHHHHHHHHhcc
Confidence 445555444443
No 142
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=27.57 E-value=3.5e+02 Score=27.97 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=69.2
Q ss_pred CccccccccccchhHHHH-HHHhhcccc--cCChhHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHH
Q 038994 26 ATTTIKSKKLTLIPLIFL-IYFEVAGGP--YGEEPAVKA-AGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVI 101 (471)
Q Consensus 26 ~~~~~~~r~l~~~~~~~~-~~~~~iG~~--~~~~~~~~~-~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~ 101 (471)
.++..+.|++....+-.- +-|--+|.. +...+.... -+ ..+++..+-+++.++--..++.-.+..+-. =.-.
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~--y~i~G~~vy~vm~sLGEma~~~P~sGsF~~--ya~r 117 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIA--YLIIGIMVYFVMQSLGELAVFYPVSGSFST--YATR 117 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCCCchhh--hhhh
Confidence 557888999999888753 333335532 222211111 11 233343333333233222222223222222 1234
Q ss_pred HHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 038994 102 WADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLK-KVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAV 178 (471)
Q Consensus 102 ~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 178 (471)
|+...+|=..||.--+.+.+. +..--..+....+|-. +..|. +.+..+..++++++-.+..++--..-....
T Consensus 118 fvdpa~GFa~gWnYw~~w~v~-~~~El~aa~~vi~yW~p~~v~~----~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s 190 (541)
T COG0833 118 FVDPAFGFALGWNYWLNWAVT-LPLELTAASLVIQYWFPDTVPP----WIWIAIFLVLIFLLNLFGVKGFGETEFWFS 190 (541)
T ss_pred hcCchHHHHHHHHHHHHHHHH-hhHHHHHHHHhhhhhcCCCCCh----HHHHHHHHHHHHHHHHhcccccceehHHHH
Confidence 555666666666543333333 3333344444555553 22454 566666666777777777766655444333
No 143
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=27.25 E-value=74 Score=30.11 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 038994 438 GLMTLGAIGWYFFMKFLKSK 457 (471)
Q Consensus 438 ~~~~~~g~~~~~~~~~~~~~ 457 (471)
++++++-+++|++.|+|||+
T Consensus 266 liIVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 266 LIIVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444455566666655543
No 144
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=27.22 E-value=5e+02 Score=25.70 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=20.5
Q ss_pred hhhhhccCCCCCcHHHHHHHHHHHHHhhc
Q 038994 335 KFFGLRSKKFNTPWVGILVSTLITLGVSY 363 (471)
Q Consensus 335 ~~~~~~~~r~~~P~~a~~~~~~~~~~~~~ 363 (471)
+.+.|.-+|-|.|+.-+..+.+++.++.+
T Consensus 47 ~~~~k~~~~~~~p~~v~~~t~~i~~~~~l 75 (388)
T TIGR00771 47 SLLSRPLKLIRSPYIILSATYVIGQIMAQ 75 (388)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHhh
Confidence 44455555467799999988888887653
No 145
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=26.29 E-value=6.9e+02 Score=25.28 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=22.6
Q ss_pred hhhhhccCCCCCcHHHHHHHHHHHHHhhccC
Q 038994 335 KFFGLRSKKFNTPWVGILVSTLITLGVSYMD 365 (471)
Q Consensus 335 ~~~~~~~~r~~~P~~a~~~~~~~~~~~~~~~ 365 (471)
+.++|+.+.-++|..|+.++.+++.+..+++
T Consensus 82 r~l~~lA~~p~t~~~Ai~lv~~vs~i~s~in 112 (453)
T PF02667_consen 82 RLLDRLASLPKTPRQAIVLVALVSMIASWIN 112 (453)
T ss_pred HHHHHHHhcCCCCcceeeHHHHHHHHHHHHH
Confidence 4556666667889999998888888765544
No 146
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=26.06 E-value=7.6e+02 Score=25.64 Aligned_cols=36 Identities=6% Similarity=0.119 Sum_probs=17.3
Q ss_pred CCCcHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHH
Q 038994 344 FNTPWVGILVSTLITLGVSYMDFESIVASANFLYSL 379 (471)
Q Consensus 344 ~~~P~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 379 (471)
..+|+.++-.......-..-.+...+.........+
T Consensus 151 ~~v~fGa~G~pi~~~~~~~gl~~~~l~~~~a~~~~~ 186 (522)
T PF02652_consen 151 APVSFGAVGTPIIVGASVTGLPFMELSSMVALQLPV 186 (522)
T ss_pred cchhhHhhhHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 345555555444444333344555555555543333
No 147
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.94 E-value=5.3e+02 Score=26.24 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038994 435 LVSGLMTLGAIGWYFFMK 452 (471)
Q Consensus 435 ~~~~~~~~~g~~~~~~~~ 452 (471)
++.+.++++|++++++.+
T Consensus 259 ~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 259 FTSTFVFIGAVVYIILAP 276 (460)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 455566677765554333
No 148
>COG2149 Predicted membrane protein [Function unknown]
Probab=23.15 E-value=3.9e+02 Score=21.28 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038994 371 ASANFLYSLGMLLEFAAFIWL 391 (471)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~ 391 (471)
....+...+..+....+..+.
T Consensus 58 ~lg~fii~~gil~~a~g~~r~ 78 (120)
T COG2149 58 LLGVFLILVGILLAALGALRW 78 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555554444443
No 149
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=23.05 E-value=7.7e+02 Score=24.67 Aligned_cols=74 Identities=19% Similarity=0.327 Sum_probs=53.9
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 038994 101 IWADRAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAV 178 (471)
Q Consensus 101 ~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 178 (471)
.++++.||+.-..+.|-+..+....+.......+++|+...+|. .....++.++......+.-.|....-++..
T Consensus 267 ~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~----~SY~~~v~if~i~sflvan~GL~~Ii~isv 340 (431)
T COG1114 267 AYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK----LSYKTWVIIFTLISFLVANLGLEQIIKISV 340 (431)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 46777899999999999999988888888889999999999884 233344445555555666566655555443
No 150
>PRK11056 hypothetical protein; Provisional
Probab=22.68 E-value=4e+02 Score=21.25 Aligned_cols=6 Identities=33% Similarity=0.201 Sum_probs=2.4
Q ss_pred HHHHHH
Q 038994 386 AAFIWL 391 (471)
Q Consensus 386 ~~~~~~ 391 (471)
+++..+
T Consensus 46 LavycL 51 (120)
T PRK11056 46 LAVYCL 51 (120)
T ss_pred HHHHHH
Confidence 344333
No 151
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=22.55 E-value=8.1e+02 Score=24.74 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=10.9
Q ss_pred CCCcHHHHHHHHHHHHHh
Q 038994 344 FNTPWVGILVSTLITLGV 361 (471)
Q Consensus 344 ~~~P~~a~~~~~~~~~~~ 361 (471)
.+.|....+...++...+
T Consensus 376 ~~~~~~~~~~~~~i~i~l 393 (502)
T TIGR01695 376 TRTPFINSVISVVLNALL 393 (502)
T ss_pred CccCHHHHHHHHHHHHHH
Confidence 667777776665554443
No 152
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=22.51 E-value=2.3e+02 Score=20.81 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 038994 435 LVSGLMTLGAIGWYFFMKFLK 455 (471)
Q Consensus 435 ~~~~~~~~~g~~~~~~~~~~~ 455 (471)
++.+.+.++.+++|..+||..
T Consensus 8 ~~~V~V~IVclliya~YRR~~ 28 (92)
T PHA02681 8 LTVIVISIVCYIVIMMYRRSC 28 (92)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 334455566667777666653
No 153
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=21.72 E-value=9.2e+02 Score=25.10 Aligned_cols=101 Identities=13% Similarity=0.076 Sum_probs=56.6
Q ss_pred cchhHHHHHHHhhcc-cccCChhHHHhhC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCChhHH
Q 038994 36 TLIPLIFLIYFEVAG-GPYGEEPAVKAAG-PLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGPFFGS 113 (471)
Q Consensus 36 ~~~~~~~~~~~~~iG-~~~~~~~~~~~~G-~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 113 (471)
+.+-++..=+.++.| |+..=|...+.-| +...+ |++.+.+++=..-=.+.-+.|...+.-+.-..+++.+|+..+.
T Consensus 53 nk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~L--WIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~ 130 (575)
T COG1966 53 NKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFL--WILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKV 130 (575)
T ss_pred CchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHH--HHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHH
Confidence 334455556666667 5555444444566 33333 4444443222111122333343334457778899999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 038994 114 LMGSWKFLSGVINIAAFPVLCIDYL 138 (471)
Q Consensus 114 ~~g~~~~~~~~~~~a~~~~~~~~~~ 138 (471)
+.....++--....+..+...++.+
T Consensus 131 ~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 131 FFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887766666666666555555443
No 154
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.87 E-value=1.1e+02 Score=24.25 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 038994 67 ALLGFMIFPFIWSIPEALITAELSTAFPG 95 (471)
Q Consensus 67 ~~~~~~i~~~i~~~~~a~~~~el~~~~p~ 95 (471)
-.+++++.++++.+|..+...-+-..+..
T Consensus 75 ~~~~llilG~L~fIPG~Y~~~i~y~a~rg 103 (115)
T PF05915_consen 75 RGWALLILGILCFIPGFYHTRIAYYAWRG 103 (115)
T ss_pred ccchHHHHHHHHHhccHHHHHHHHHHHcC
Confidence 34455666665677777665555444443
No 155
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=20.70 E-value=6.7e+02 Score=23.11 Aligned_cols=8 Identities=38% Similarity=0.688 Sum_probs=4.4
Q ss_pred CcccCCch
Q 038994 401 PYRVPMKL 408 (471)
Q Consensus 401 ~~~~~~~~ 408 (471)
.+|.|...
T Consensus 199 ~~~lP~~~ 206 (290)
T PF09991_consen 199 EWRLPRWL 206 (290)
T ss_pred HHhCcHHH
Confidence 36666654
Done!