Query 038994
Match_columns 471
No_of_seqs 153 out of 1700
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 08:26:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 2.3E-53 7.8E-58 428.4 41.4 418 29-457 4-433 (445)
2 3gia_A Uncharacterized protein 100.0 7.5E-50 2.6E-54 402.5 42.0 413 30-459 3-427 (444)
3 4djk_A Probable glutamate/gamm 100.0 4E-49 1.4E-53 404.4 41.4 394 27-425 5-426 (511)
4 2jln_A MHP1; hydantoin, transp 99.4 2.2E-10 7.4E-15 115.6 29.8 290 29-327 21-329 (501)
5 3dh4_A Sodium/glucose cotransp 98.4 0.00056 1.9E-08 69.3 32.4 283 32-324 19-348 (530)
6 2xq2_A Sodium/glucose cotransp 98.4 0.0018 6.2E-08 66.5 36.4 283 32-324 48-377 (593)
7 2a65_A Leutaa, Na(+):neurotran 98.1 0.0094 3.2E-07 59.5 31.9 222 37-263 11-291 (519)
8 3gia_A Uncharacterized protein 93.6 5.6 0.00019 38.6 24.8 15 245-259 215-229 (444)
9 4ain_A Glycine betaine transpo 77.4 59 0.002 32.2 20.5 19 32-50 93-111 (539)
10 2wsw_A BCCT family betaine/car 69.3 90 0.0031 30.7 28.5 32 300-331 411-442 (509)
11 2jln_A MHP1; hydantoin, transp 38.4 82 0.0028 31.0 8.0 36 149-184 143-178 (501)
12 2l2t_A Receptor tyrosine-prote 30.5 38 0.0013 20.8 2.5 8 446-453 29-36 (44)
13 2ks1_B Epidermal growth factor 28.7 44 0.0015 20.5 2.5 8 446-453 30-37 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=2.3e-53 Score=428.39 Aligned_cols=418 Identities=19% Similarity=0.273 Sum_probs=351.6
Q ss_pred ccccccccchhHHHHHHHhhcc-cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHh
Q 038994 29 TIKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAF 107 (471)
Q Consensus 29 ~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 107 (471)
++++|+++++++.++.+++++| |++..+..+..+||. .+++|++++++ .++.+++|+|+++++|++||.|.|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIG-ALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHH-HHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHH-HHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 4568999999999999999999 678888777778884 67889998885 88899999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 038994 108 GPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLSP 187 (471)
Q Consensus 108 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 187 (471)
||.+|+..||.+++.+....+......+++++.++|...++++..++++++.++.+.+|++|+|..++++.+.+.++++.
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~ 161 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIP 161 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888999999998888865556788889999999999999999999999999999999988
Q ss_pred HHHHHHHhhccccCCCcccc-CCCC--CCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHH
Q 038994 188 FIIMSLAAIPKIKPHRWFSS-GQKG--LKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYLI 264 (471)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l 264 (471)
++++++.++...+++++.+. .+.+ ...++...+...+|+|.|+|..++++||+|||+|++||++..+..+++++|++
T Consensus 162 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~ 241 (445)
T 3l1l_A 162 IVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVL 241 (445)
T ss_dssp HHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHH
Confidence 88887777666555443221 1111 01233444556789999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCcccccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccCCC
Q 038994 265 PLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSKKF 344 (471)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~ 344 (471)
..++.....|+++...++.|+.+++++..+++...++.+..+++.+++.++.+++.+|.+++|+|||.+|++|+|+|| +
T Consensus 242 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~-~ 320 (445)
T 3l1l_A 242 STTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNK-A 320 (445)
T ss_dssp HHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCT-T
T ss_pred HHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCC-C
Confidence 999999999998888788899999999998988899999999999999999999999999999999999999999997 7
Q ss_pred CCcHHHHHHHHHHHHHhhcc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhHHHHHHH
Q 038994 345 NTPWVGILVSTLITLGVSYM--------DFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPYRVPMKLPGLVIMCL 416 (471)
Q Consensus 345 ~~P~~a~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (471)
++|+++++++.+++.++.+. .++.+.++.++...+.|.+.+++.+++|+|+| .+ |.|.. .+...
T Consensus 321 ~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~---r~~~~----~~~~~ 392 (445)
T 3l1l_A 321 GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GK---ARPAY----LAVTT 392 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GG---GCTTT----HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc---ccchh----HHHHH
Confidence 99999999999877665532 36889999999999999999999999988776 22 33433 23344
Q ss_pred HhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038994 417 IPSGFLVVIMVVATKIVYLVSGLMTLGAIGWYFFMKFLKSK 457 (471)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (471)
+..+++++..+..++.....+..++++|+.+|.+.++++++
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 393 IAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 44556666666778888888999999999999877654443
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=7.5e-50 Score=402.52 Aligned_cols=413 Identities=17% Similarity=0.228 Sum_probs=333.5
Q ss_pred cccccccchhHHHHHHHhhcc-cccCChhHH-HhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHh
Q 038994 30 IKSKKLTLIPLIFLIYFEVAG-GPYGEEPAV-KAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAF 107 (471)
Q Consensus 30 ~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~-~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 107 (471)
++||+++++++.++++++++| |++..++.. ..+|| ..+++|++++++ .++.+++++|+++++|++||.|+|+++.+
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~-~~~~~~~~~el~~~~P~~Gg~y~~~~~~~ 80 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIY-ALLVAYSYTKLGAKIVSNAGPIAFIHKAI 80 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHH-HHHHHHHHHHHHTTCCCTTTHHHHHHHHH
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCcHHHhHHHHh
Confidence 468999999999999999999 777776654 44788 678889998885 88899999999999999999999999999
Q ss_pred CChh-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 038994 108 GPFF-GSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLS 186 (471)
Q Consensus 108 g~~~-g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 186 (471)
||++ +...+|.+++.+....+..+...+++++..++...+++...++++++.++.+.+|++|+|..++++.+...++++
T Consensus 81 G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~ 160 (444)
T 3gia_A 81 GDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLL 160 (444)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9973 555689999999999999999999999988876555566667888899999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCccccCCCCCCCchhHHH---HHHHHHhhhhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHH
Q 038994 187 PFIIMSLAAIPKIKPHRWFSSGQKGLKKDWNLFF---NTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYL 263 (471)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~ 263 (471)
.++++++.++...+++++.+... +.++.+++ ...+|+|.|+|..++++||+|||+|++||++..+..+++++|+
T Consensus 161 ~~~~~ii~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~ 237 (444)
T 3gia_A 161 ILGLFIFAGLITIHPSYVIPDLA---PSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYV 237 (444)
T ss_dssp HHHHHHHHHHHHCCGGGTSCCCS---HHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcChhhcCCCCC---CcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHH
Confidence 88888777777666665554222 22444443 3356899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCcccc-cccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhhccC
Q 038994 264 IPLFAVIGAVNVDQSQW-DSGFHATAAEMIAGKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMADLGFLPKFFGLRSK 342 (471)
Q Consensus 264 l~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~ 342 (471)
+..++.....|+++... ++.|+.+.++...+++...++.+..+++.+++.++.+++.+|++++|+|||.+|++|+|+|+
T Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~ 317 (444)
T 3gia_A 238 GVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVW 317 (444)
T ss_dssp HHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSC
T ss_pred HHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCC
Confidence 99999998888877543 45688888888888888888899999999999999999999999999999999999999885
Q ss_pred CCCCcHHHHHHHHHHHHHhh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhHHHHHHHHhHHH
Q 038994 343 KFNTPWVGILVSTLITLGVS-YMDFESIVASANFLYSLGMLLEFAAFIWLRMKKPQLKRPYRVPMKLPGLVIMCLIPSGF 421 (471)
Q Consensus 343 r~~~P~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (471)
++|+++++++.+++.++. ..+++.+.++.+....+.|.+.+++.+++|||+|+. +...+.+++.+.+
T Consensus 318 --~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----------~~~~~~~~~~~~~ 385 (444)
T 3gia_A 318 --FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGGR----------KEIVIFSFIVVLG 385 (444)
T ss_dssp --CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCC----------HHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc----------chHHHHHHHHHHH
Confidence 459999999999887765 568999999999999999999999999998887542 1222233333333
Q ss_pred HHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 038994 422 LVVIMVV----ATKIVYLVSGLMTLGAIGWYFFMKFLKSKNV 459 (471)
Q Consensus 422 ~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (471)
..+.... .++........+.+...+.+..++++++|+.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (444)
T 3gia_A 386 VFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTF 427 (444)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3332222 2333444555555566666666655555443
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=4e-49 Score=404.38 Aligned_cols=394 Identities=17% Similarity=0.227 Sum_probs=294.6
Q ss_pred ccccccccccchhHHHHHHHhhcccccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCChHHHHHH
Q 038994 27 TTTIKSKKLTLIPLIFLIYFEVAGGPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELST--AFPGDGGFVIWAD 104 (471)
Q Consensus 27 ~~~~~~r~l~~~~~~~~~~~~~iG~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~--~~p~~Gg~y~~~~ 104 (471)
++++++|+++++++++++++.++| .+.++. ...+|+. .++.++++++++.++.+++++|+++ ++| +||.|+|++
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig-~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~ 80 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA-VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVS 80 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC-GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh-hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhHH
Confidence 356778999999999999999976 444443 4557874 4445555565545678999999999 999 999999999
Q ss_pred HHhCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--ccccC-CChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q 038994 105 RAFGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKV--IHPLE-SGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLG 181 (471)
Q Consensus 105 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (471)
+.+||++||.+||.+++++....+......+.+++.+ .|... ++|...+++++++++.+.+|++|.|..++++.+..
T Consensus 81 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~ 160 (511)
T 4djk_A 81 NTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGF 160 (511)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHH
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 9999999999999999999998888888888888776 34432 45778888999999999999999999999999877
Q ss_pred HHHHHH-HHHHHHHhhc---cccCC----CccccCCCCCCCchhHHHHHHHHHhhhhhhhhhhhhhccCCCcchhHHHHH
Q 038994 182 LVSLSP-FIIMSLAAIP---KIKPH----RWFSSGQKGLKKDWNLFFNTLFWNLNFWDNVSTLAGEVDRPQKTFPVALLV 253 (471)
Q Consensus 182 ~~~~~~-~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~ 253 (471)
.++++. ++++++.++. ..++. ++.+..+.....+....+...+|+|.|+|.+++++||+|||+|++||++..
T Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~ 240 (511)
T 4djk_A 161 FAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLL 240 (511)
T ss_dssp HHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHH
Confidence 664332 3333333332 11111 111111111111223345667899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCcccccccH---HHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 038994 254 AVIFTCVAYLIPLFAVIGAVNVDQSQWDSGF---HATAAEMIA--GKWLKIWLEVGAVLSAIGLFEAQLSSSAYQILGMA 328 (471)
Q Consensus 254 ~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a 328 (471)
++.+++++|++..++.....|+++...++.+ +..+.+..+ .++...++.+..+++.+++.++.+++.+|++++++
T Consensus 241 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 320 (511)
T 4djk_A 241 LMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTA 320 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998876654432 222333333 36677888888899999999999999999999999
Q ss_pred hcCCCchhhhhccCCCCCcHHHHHHHHHHHHHh-h-ccC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 038994 329 DLGFLPKFFGLRSKKFNTPWVGILVSTLITLGV-S-YMD--------FESIVASANFLYSLGMLLEFAAFIWLRMKKPQL 398 (471)
Q Consensus 329 ~d~~lP~~~~~~~~r~~~P~~a~~~~~~~~~~~-~-~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (471)
|||.+|++|+|+|| +++|+++++++.++..+. . +.+ ++.+.++.++...+.|.+.+++++++|+|+|+.
T Consensus 321 rdg~lP~~~~~~~~-~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~ 399 (511)
T 4djk_A 321 QKNLLPAAFAKMNK-NGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDL 399 (511)
T ss_dssp HGGGCSSSCCCCCS-SSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCcccHHHHhcCC-CCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999997 899999999985443332 2 233 678889999999999999999999999999888
Q ss_pred CCCcccCCchhHHHHHHHHhHHHHHHH
Q 038994 399 KRPYRVPMKLPGLVIMCLIPSGFLVVI 425 (471)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (471)
+||||.|.+.+...++.++.++.+++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (511)
T 4djk_A 400 KRTFNIPGGKGVKLVVAIVGLLTSIMA 426 (511)
T ss_dssp CCSCCCSSTTHHHHHHHHHHHHHHHHH
T ss_pred CCCeecCCCchHHHHHHHHHHHHHHHH
Confidence 999999976554443434444444333
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.41 E-value=2.2e-10 Score=115.62 Aligned_cols=290 Identities=13% Similarity=0.042 Sum_probs=157.2
Q ss_pred ccccccccchhHHHHHHHhhcc-cccCChhHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 038994 29 TIKSKKLTLIPLIFLIYFEVAG-GPYGEEPAVKA-AGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRA 106 (471)
Q Consensus 29 ~~~~r~l~~~~~~~~~~~~~iG-~~~~~~~~~~~-~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 106 (471)
.+.+|+.++++.+.+=++..+. +.+.++..... -+....+++.+++.++..++ ....+..+.++-.+ .....+..
T Consensus 21 p~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~-~~l~~~~G~~~Gl~--~~v~~R~~ 97 (501)
T 2jln_A 21 RYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVIL-LFFTQSAAIRWGIN--FTVAARMP 97 (501)
T ss_dssp CGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHH-HHHHTHHHHHHCCC--HHHHTTTT
T ss_pred ChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHH-HHHHhHHHhhcCCC--hhhhhHhh
Confidence 3446778999999888877654 23333333333 12223444445444432332 22244555554333 55688889
Q ss_pred hCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 038994 107 FGPFFGSLMGSWKFLSGVINIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVSLS 186 (471)
Q Consensus 107 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 186 (471)
||++.+.+...+..+..+...+.+....++.+...++...+..+.++..+++.++...+.++|.|...+++.+...+.++
T Consensus 98 FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i 177 (501)
T 2jln_A 98 FGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLA 177 (501)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 99999999888888877777777777777777665431100011345555566677788899999999999988877777
Q ss_pred HHHHHHHHhhccccC--CCccccCCCCCCCchhHHHHH-HHHHhhhhhhhhhhhhhccCCCcc-----------hhHHHH
Q 038994 187 PFIIMSLAAIPKIKP--HRWFSSGQKGLKKDWNLFFNT-LFWNLNFWDNVSTLAGEVDRPQKT-----------FPVALL 252 (471)
Q Consensus 187 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~af~G~e~~~~~~~E~k~p~k~-----------ip~ai~ 252 (471)
.++.+.+..+.+.+. +............++...+.. .-+...+.-..+.++.+.|++++. .-++..
T Consensus 178 ~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~ 257 (501)
T 2jln_A 178 MGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQW 257 (501)
T ss_dssp HHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHHHHH
Confidence 666665555443332 111111111112233333322 112123335577888888887441 333444
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHhhhHHH-HHHHH-HHHHHHHHHHHH-HHHhhhHHHHHHH
Q 038994 253 VAVIFTCVAYLIPLFAVIGAVNVDQSQWDSGFHATAAEMIAGKWL-KIWLE-VGAVLSAIGLFE-AQLSSSAYQILGM 327 (471)
Q Consensus 253 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~-~~~~~~~~~s~~-~~~~~~sR~l~~~ 327 (471)
.+..+...+..+........ ....+|...+.+...++.. ..+.. +..+++.+++.. ...++.+-.+..+
T Consensus 258 lG~~i~~~~~~~lG~~~~~~------~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 258 LGMVPASIIFGFIGAASMVL------VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh------ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 44443333322222222111 1233565555443433333 45555 666667766665 3666666555554
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.45 E-value=0.00056 Score=69.29 Aligned_cols=283 Identities=11% Similarity=0.013 Sum_probs=135.2
Q ss_pred cccccchhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCC
Q 038994 32 SKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGP 109 (471)
Q Consensus 32 ~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 109 (471)
.|++++|-...-.+++.++ ...+.++.....|.....+.|.. ++ .....+..+...-++. +.-..++|.++.||+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~-~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AI-TLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HH-HHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HH-HHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 5899999888877777777 35777777766665433222221 11 1112244445544444 345899999999999
Q ss_pred hhHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhccccCCChhHHHHHHHHH-HHHHHHhhccchhhHH---HHHHHHHHH
Q 038994 110 FFGSLMGSWKFLSGVI-NIAAFPVLCIDYLKKVIHPLESGWPRSLAIMVST-CILSFLNFTGLTIVGY---AAVLLGLVS 184 (471)
Q Consensus 110 ~~g~~~g~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~---~~~~~~~~~ 184 (471)
+...+.+....+.+.. ..+......+..++..++. +.....++.. +.......-|.|...+ +|.+...+.
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi-----~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~~g 170 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI-----PLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLG 170 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHTTC------CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 8877777665544432 3344455555666666652 2222222222 2233334456666554 444333332
Q ss_pred HHHHHHHHHHhhcc-------------ccCCCccccCCCC-C----CCchhHHHHHH---HHHhhhhh-hhhhhhhhccC
Q 038994 185 LSPFIIMSLAAIPK-------------IKPHRWFSSGQKG-L----KKDWNLFFNTL---FWNLNFWD-NVSTLAGEVDR 242 (471)
Q Consensus 185 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~----~~~~~~~~~~~---~~af~G~e-~~~~~~~E~k~ 242 (471)
.+.+..+....... .+++.+.....++ . ..++...+... -..|.|.+ ...+-.=..||
T Consensus 171 ~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q~i~qR~laaks 250 (530)
T 3dh4_A 171 GFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKS 250 (530)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTCHHHHHHHSSSC
T ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 22222222111100 1112211110010 0 01121111111 12233432 13333344677
Q ss_pred CCcchhHHHHHHHHHHHHHHHH---HHHHHHhcccC---------------CcccccccHHHHHHHHhhhHHHHHHHHHH
Q 038994 243 PQKTFPVALLVAVIFTCVAYLI---PLFAVIGAVNV---------------DQSQWDSGFHATAAEMIAGKWLKIWLEVG 304 (471)
Q Consensus 243 p~k~ip~ai~~~~~~~~~~y~l---~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 304 (471)
+ |+..|+..++.+......++ ..++.....+. .+..+.|..+..+.+ ..++.+..++.+.
T Consensus 251 ~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~-~lp~~l~Gl~~a~ 328 (530)
T 3dh4_A 251 V-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ-FLPVGVKGVVFAA 328 (530)
T ss_dssp H-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT-TCCTTHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH-HcchhHHHHHHHH
Confidence 5 67888887776543332211 11111111100 123345566666665 6677777777777
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 038994 305 AVLSAIGLFEAQLSSSAYQI 324 (471)
Q Consensus 305 ~~~~~~~s~~~~~~~~sR~l 324 (471)
.+.+..++..+.+++.+-.+
T Consensus 329 llAA~mST~ss~l~s~st~~ 348 (530)
T 3dh4_A 329 LAAAIVSSLASMLNSTATIF 348 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 77777777777777766554
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.44 E-value=0.0018 Score=66.50 Aligned_cols=283 Identities=10% Similarity=0.015 Sum_probs=134.9
Q ss_pred cccccchhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCC
Q 038994 32 SKKLTLIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELSTAFPGDGGFVIWADRAFGP 109 (471)
Q Consensus 32 ~r~l~~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 109 (471)
.|++++|-...-..++..+ ..++.++.....|.....+.|.. .+ .....++.+...-++. +.-..++|.++.||+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~-~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AI-TLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HH-HHHHHHHTHHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HH-HHHHHHHHHHHHHHhC-CCCCcHHHHHHHccC
Confidence 5788888766655566555 35666776666664322222211 11 1122244455554554 345799999999998
Q ss_pred hhHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhccccCCChhHHHHHH-HHHHHHHHHhhccchhhHH---HHHHHHHHH
Q 038994 110 FFGSLMGSWKFLSGV-INIAAFPVLCIDYLKKVIHPLESGWPRSLAIM-VSTCILSFLNFTGLTIVGY---AAVLLGLVS 184 (471)
Q Consensus 110 ~~g~~~g~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~---~~~~~~~~~ 184 (471)
....+.+....+.+. ...+......+..++..++. +.....+ ...+.......-|.|...+ +|.+...+.
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi-----~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~ 199 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI-----PLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLG 199 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----cHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 887777665544333 33445555566666666652 2222222 2222334444466776544 444433333
Q ss_pred HHHHHHHHHHhhcc-------------ccCCCccccCCCCC-----CCchhHHHHH---HHHHhhhhh-hhhhhhhhccC
Q 038994 185 LSPFIIMSLAAIPK-------------IKPHRWFSSGQKGL-----KKDWNLFFNT---LFWNLNFWD-NVSTLAGEVDR 242 (471)
Q Consensus 185 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~af~G~e-~~~~~~~E~k~ 242 (471)
.+.+.++....... ..++.+......+. ...+...+.. ....+.|.+ ...+-.=+.||
T Consensus 200 ~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~~~qR~laaks 279 (593)
T 2xq2_A 200 GFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKS 279 (593)
T ss_dssp HHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCSHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCChHHHHHhheeCC
Confidence 22222222111110 00122211111110 0112211111 112234443 24455567788
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHH---HHHHhc-cc--------------CCcccccccHHHHHHHHhhhHHHHHHHHHH
Q 038994 243 PQKTFPVALLVAVIFTCVAYLIPL---FAVIGA-VN--------------VDQSQWDSGFHATAAEMIAGKWLKIWLEVG 304 (471)
Q Consensus 243 p~k~ip~ai~~~~~~~~~~y~l~~---~~~~~~-~~--------------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 304 (471)
+ |+..|+..++.+......++.. ...... .+ ..+..+.|..+..+. +..++++..++.+.
T Consensus 280 ~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~lp~~l~gl~~a~ 357 (593)
T 2xq2_A 280 V-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QFLPVGVKGVVFAA 357 (593)
T ss_dssp H-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HTSCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HHcChhHHHHHHHH
Confidence 6 7788998877765443333221 111111 00 112223455566666 66777777777777
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 038994 305 AVLSAIGLFEAQLSSSAYQI 324 (471)
Q Consensus 305 ~~~~~~~s~~~~~~~~sR~l 324 (471)
.+.+..++..+.+++.+-.+
T Consensus 358 llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 358 LAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776666543
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=98.12 E-value=0.0094 Score=59.52 Aligned_cols=222 Identities=14% Similarity=0.086 Sum_probs=120.5
Q ss_pred chhHHHHHHHhhcc--cccCChhHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-c----CCCCChHHHHHHHHhCC
Q 038994 37 LIPLIFLIYFEVAG--GPYGEEPAVKAAGPLYALLGFMIFPFIWSIPEALITAELST-A----FPGDGGFVIWADRAFGP 109 (471)
Q Consensus 37 ~~~~~~~~~~~~iG--~~~~~~~~~~~~G~~~~~~~~~i~~~i~~~~~a~~~~el~~-~----~p~~Gg~y~~~~~~~g~ 109 (471)
.++.+...+|..+| .+.-.|......|.++.++.+++..+++.+|.. +.|++- + .-+.|..-.|-+ . .|
T Consensus 11 r~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll--~~E~alGq~~~~~~r~~~i~a~~~-l-~~ 86 (519)
T 2a65_A 11 RLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLM--WIEWAMGRYGGAQGHGTTPAIFYL-L-WR 86 (519)
T ss_dssp HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHH--HHHHHHHHHHHTTTCCSHHHHHHH-H-SC
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH--HHHHHhcccchhccCCCHHHHHHH-h-cC
Confidence 35566666677777 377788877775655777778887765566543 466544 2 334445554522 1 22
Q ss_pred h-hHHHHHHHHHH-------HHhhHHHHHHHHHH-------------------------HHHHHhccccC-------CCh
Q 038994 110 F-FGSLMGSWKFL-------SGVINIAAFPVLCI-------------------------DYLKKVIHPLE-------SGW 149 (471)
Q Consensus 110 ~-~g~~~g~~~~~-------~~~~~~a~~~~~~~-------------------------~~~~~~~~~~~-------~~~ 149 (471)
. .--..||...+ .|....+-...-.. ++.++..+..+ .+|
T Consensus 87 ~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~ 166 (519)
T 2a65_A 87 NRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSL 166 (519)
T ss_dssp SHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCH
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccH
Confidence 1 11112222221 11111111000000 12222221100 124
Q ss_pred hHHHHHHHHHHHHHHHhhccc-hhhHHHHHHHHHHHHHHHHHHHHHhhccccC-----C----CccccCCCC-CCCchhH
Q 038994 150 PRSLAIMVSTCILSFLNFTGL-TIVGYAAVLLGLVSLSPFIIMSLAAIPKIKP-----H----RWFSSGQKG-LKKDWNL 218 (471)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~-~~~~~~~ 218 (471)
...+.-++..++...+..+|+ |-.+|++.++.....+.++++.+-++.-.+| + .+.|+...- ...-|..
T Consensus 167 ~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~ 246 (519)
T 2a65_A 167 FAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 246 (519)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHH
Confidence 444555556666777888999 7789999888877777666666555432221 0 122221111 1234677
Q ss_pred HHHHHHHHhh-hhhhhhhhhhhccCCCcchhHHHHHHHHHHHHHHH
Q 038994 219 FFNTLFWNLN-FWDNVSTLAGEVDRPQKTFPVALLVAVIFTCVAYL 263 (471)
Q Consensus 219 ~~~~~~~af~-G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~ 263 (471)
+....+|++. |+.....++.-.|+ +.|++|.........+..-+
T Consensus 247 A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sl 291 (519)
T 2a65_A 247 AVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEV 291 (519)
T ss_dssp HHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHH
Confidence 7778888877 88888888888776 57788876666665444433
No 8
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=93.63 E-value=5.6 Score=38.56 Aligned_cols=15 Identities=7% Similarity=0.018 Sum_probs=6.1
Q ss_pred cchhHHHHHHHHHHH
Q 038994 245 KTFPVALLVAVIFTC 259 (471)
Q Consensus 245 k~ip~ai~~~~~~~~ 259 (471)
||-.|.+-.++....
T Consensus 215 k~P~r~ip~ai~~~~ 229 (444)
T 3gia_A 215 ENPKKNVPRAIFISI 229 (444)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred cCcccchhHHHHHHH
Confidence 333344444444333
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=77.36 E-value=59 Score=32.17 Aligned_cols=19 Identities=11% Similarity=0.298 Sum_probs=13.3
Q ss_pred cccccchhHHHHHHHhhcc
Q 038994 32 SKKLTLIPLIFLIYFEVAG 50 (471)
Q Consensus 32 ~r~l~~~~~~~~~~~~~iG 50 (471)
|.+++.++=+++.+++=+|
T Consensus 93 kPefS~~sW~aMlF~AGmG 111 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMG 111 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCC
T ss_pred CCCCcchHHHHHHHHHhhc
Confidence 5567777777777776555
No 10
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=69.26 E-value=90 Score=30.66 Aligned_cols=32 Identities=6% Similarity=-0.076 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Q 038994 300 WLEVGAVLSAIGLFEAQLSSSAYQILGMADLG 331 (471)
Q Consensus 300 ~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d~ 331 (471)
++....++..+.-+.+..-+.+-.+-.++.+|
T Consensus 411 i~~~l~iil~~~FfvTSaDS~s~vi~~~ss~g 442 (509)
T 2wsw_A 411 ATMWGFFILCFIATVTLINACSYTLAMSTCRS 442 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCC
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHcCC
Confidence 33344444444445555556666666676655
No 11
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=38.43 E-value=82 Score=30.98 Aligned_cols=36 Identities=11% Similarity=-0.056 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 038994 149 WPRSLAIMVSTCILSFLNFTGLTIVGYAAVLLGLVS 184 (471)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 184 (471)
+...++..++.+.....-...++...++......+.
T Consensus 143 ~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i~ 178 (501)
T 2jln_A 143 PLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAM 178 (501)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 444444444445555556666666666554443333
No 12
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=30.47 E-value=38 Score=20.81 Aligned_cols=8 Identities=0% Similarity=0.276 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 038994 446 GWYFFMKF 453 (471)
Q Consensus 446 ~~~~~~~~ 453 (471)
.++++.|+
T Consensus 29 ~~~~~~RR 36 (44)
T 2l2t_A 29 TFAVYVRR 36 (44)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhh
Confidence 34444443
No 13
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=28.66 E-value=44 Score=20.54 Aligned_cols=8 Identities=38% Similarity=0.567 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 038994 446 GWYFFMKF 453 (471)
Q Consensus 446 ~~~~~~~~ 453 (471)
.++++.|+
T Consensus 30 ~~~~~~RR 37 (44)
T 2ks1_B 30 GIGLFMRR 37 (44)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhh
Confidence 33444443
Done!