BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038999
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 67.8 bits (164), Expect = 9e-12, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170
+CAVCL E + ++ R LP C H FH +C+D WL S+STCPLCR
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 111 LPVFLYREIMGLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170
LP + + E C VC+C+F + LR+LP C+H FH C+D WL +N TCP+CR
Sbjct: 9 LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67
Query: 171 GN 172
+
Sbjct: 68 AD 69
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 128 CAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170
C +CL E + +R LP C H FH C+D WL++N CP+CR
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 51.6 bits (122), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 108 IDALPVFLYREIMG-LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTC 166
IDALP L E G + + C +C E+ + D LP C H FH C+ WL + TC
Sbjct: 22 IDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTC 80
Query: 167 PLCR 170
P+CR
Sbjct: 81 PVCR 84
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 128 CAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLC 169
CAVCL +F +D+L + P C HAFH C+ WL CPLC
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNL 173
+C VC +++ + +R LP C+H FH CI WL + +CP+CR +L
Sbjct: 16 LECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 128 CAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHGLG 179
C C E ++D + + C+H+FH C+ W+ N+ CPLC+ + + +G
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 80
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 128 CAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170
C +CL + S LP C HAF CI W+ N TCPLC+
Sbjct: 8 CPICLEDPSNYSMA--LP-CLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 146 MCSHAFHIDCIDTWLLSNSTCPL 168
+C+HAFH CI WL + CPL
Sbjct: 56 VCNHAFHFHCISRWLKTRQVCPL 78
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 146 MCSHAFHIDCIDTWLLSNSTCPL 168
+C+HAFH CI WL + CPL
Sbjct: 64 VCNHAFHFHCISRWLKTRQVCPL 86
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 146 MCSHAFHIDCIDTWLLSNSTCPL 168
+C+HAFH CI WL + CPL
Sbjct: 74 VCNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 36.6 bits (83), Expect = 0.024, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 146 MCSHAFHIDCIDTWLLSNSTCPL 168
+C+HAFH CI WL + CPL
Sbjct: 83 VCNHAFHFHCISRWLKTRQVCPL 105
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 36.6 bits (83), Expect = 0.025, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 146 MCSHAFHIDCIDTWLLSNSTCPL 168
+C+HAFH CI WL + CPL
Sbjct: 72 VCNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 36.2 bits (82), Expect = 0.028, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 146 MCSHAFHIDCIDTWLLSNSTCPL 168
+C+HAFH CI WL + CPL
Sbjct: 66 VCNHAFHFHCISRWLKTRQVCPL 88
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 36.2 bits (82), Expect = 0.028, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 146 MCSHAFHIDCIDTWLLSNSTCPL 168
+C+HAFH CI WL + CPL
Sbjct: 72 VCNHAFHFHCISRWLKTRQVCPL 94
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNL 173
L+ C +C F E L C+H+F CI+ W+ CP+CR ++
Sbjct: 50 LENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNL 173
L+ C +C F E L C+H+F CI+ W+ CP+CR ++
Sbjct: 61 LENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNL 173
L+ C +C F E L C+H+F CI+ W+ CP+CR ++
Sbjct: 50 LENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 119 IMGLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170
+ L + +C +C+ + L+ C+H+F CID W + CP+CR
Sbjct: 9 VKQLTDEEECCICM-----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 117 REIMGLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN-STCPLCRGNLYI 175
+ + + E F C +C + + RL P CS CI WL + CP CR L +
Sbjct: 14 QSVESIAEVFRCFICXEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70
Query: 176 HGL 178
L
Sbjct: 71 REL 73
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 31.2 bits (69), Expect = 0.86, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 128 CAVCLCEFSE---QDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170
C +C+ +SE +L + C H F C+ L + +TCP CR
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 128 CAVCLCEF----SEQDKLRLLPMCSHAFHIDCIDTWLLSNST-----CPLCRGN 172
C VC C + DK + C AFHI C+D L S + CP CR +
Sbjct: 188 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 241
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 128 CAVCLCEFSE---QDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170
C +C+ +SE +L + C H F C+ L + +TCP CR
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 128 CAVCLCEF----SEQDKLRLLPMCSHAFHIDCIDTWLLSNST-----CPLCRGN 172
C VC C + DK + C AFHI C+D L S + CP CR +
Sbjct: 172 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 128 CAVCLCEFSE---QDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170
C +C+ +SE +L + C H F C+ L + +TCP CR
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 17/66 (25%)
Query: 112 PVFLYREIMGLKEPFDCAVCLCEFSEQDKLR---LLPMCSHAFHIDCIDTWLLS-NSTCP 167
P L+ E+M C +CL D L+ C H F DCI T L S N CP
Sbjct: 28 PRSLHSELM-------CPICL------DMLKNTMTTKECLHRFCADCIITALRSGNKECP 74
Query: 168 LCRGNL 173
CR L
Sbjct: 75 TCRKKL 80
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 104 DQAFIDAL-----PVFLYREIMGLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDT 158
+A D L P L+ E+M C +CL + C H F DCI T
Sbjct: 35 QEAITDGLEIVVSPRSLHSELM-------CPICLDMLKNTMTTK---ECLHRFCADCIIT 84
Query: 159 WLLS-NSTCPLCRGNL 173
L S N CP CR L
Sbjct: 85 ALRSGNKECPTCRKKL 100
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 128 CAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLC 169
C +C F + ++P CSH + CI +L + CP C
Sbjct: 25 CGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLC 169
+C +CL + + + C H H C + L CPLC
Sbjct: 7 NCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 121 GLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNST---CPLC 169
L+E +C +C+ F+E+ L C H C++ L S+ CP C
Sbjct: 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 147 CSHAFHIDCIDTWLLS-NSTCPLCRGNL 173
C H F DCI T L S N CP CR L
Sbjct: 72 CLHRFCADCIITALRSGNKECPTCRKKL 99
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 28.1 bits (61), Expect = 8.1, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 128 CAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNST----CPLCRGNL 173
C+VC + +L + CS +H+DC+D L + CP C+ +
Sbjct: 8 CSVC----RKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,713,596
Number of Sequences: 62578
Number of extensions: 341446
Number of successful extensions: 637
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 50
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)