Query 038999
Match_columns 360
No_of_seqs 345 out of 1828
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:22:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 1.3E-17 2.9E-22 163.6 11.0 75 101-176 205-280 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 2.7E-14 5.9E-19 100.5 1.0 43 127-170 2-44 (44)
3 PHA02929 N1R/p28-like protein; 99.4 1.9E-12 4.2E-17 122.1 10.2 76 100-175 147-228 (238)
4 COG5243 HRD1 HRD ubiquitin lig 99.3 1.9E-11 4.1E-16 119.9 10.0 67 106-175 270-346 (491)
5 PF12678 zf-rbx1: RING-H2 zinc 99.2 8.4E-12 1.8E-16 97.5 2.6 45 125-170 19-73 (73)
6 COG5540 RING-finger-containing 99.1 2.3E-11 5E-16 116.6 2.2 51 124-175 322-373 (374)
7 cd00162 RING RING-finger (Real 98.8 1.6E-09 3.5E-14 74.2 2.5 44 127-173 1-45 (45)
8 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.4E-09 3.1E-14 78.5 2.1 46 125-174 2-48 (50)
9 PLN03208 E3 ubiquitin-protein 98.8 2.3E-09 5E-14 98.0 3.0 51 123-177 16-82 (193)
10 PF12861 zf-Apc11: Anaphase-pr 98.8 2.3E-09 5E-14 85.9 2.6 51 124-174 20-82 (85)
11 PHA02926 zinc finger-like prot 98.8 2.8E-09 6.1E-14 98.9 3.0 55 121-175 166-231 (242)
12 KOG0317 Predicted E3 ubiquitin 98.8 3.7E-09 7.9E-14 101.2 2.7 49 125-177 239-287 (293)
13 KOG0802 E3 ubiquitin ligase [P 98.7 3.5E-09 7.7E-14 111.1 2.4 52 124-176 290-343 (543)
14 KOG0320 Predicted E3 ubiquitin 98.7 3.5E-09 7.5E-14 95.1 2.0 52 124-177 130-181 (187)
15 PF13923 zf-C3HC4_2: Zinc fing 98.7 4.4E-09 9.6E-14 72.1 1.8 39 128-169 1-39 (39)
16 KOG0823 Predicted E3 ubiquitin 98.7 1.1E-08 2.3E-13 95.4 2.5 52 122-177 44-98 (230)
17 PF14634 zf-RING_5: zinc-RING 98.6 3.1E-08 6.8E-13 69.8 2.4 44 127-171 1-44 (44)
18 smart00504 Ubox Modified RING 98.5 5.6E-08 1.2E-12 72.6 3.1 47 126-176 2-48 (63)
19 PF00097 zf-C3HC4: Zinc finger 98.5 4.5E-08 9.8E-13 67.4 1.7 39 128-169 1-41 (41)
20 smart00184 RING Ring finger. E 98.5 6.7E-08 1.5E-12 63.8 2.3 38 128-169 1-39 (39)
21 TIGR00599 rad18 DNA repair pro 98.5 9.9E-08 2.1E-12 96.3 3.6 54 121-178 22-75 (397)
22 PF15227 zf-C3HC4_4: zinc fing 98.5 7.8E-08 1.7E-12 67.4 2.0 38 128-169 1-42 (42)
23 COG5194 APC11 Component of SCF 98.5 8.5E-08 1.8E-12 75.5 2.4 49 128-176 34-83 (88)
24 KOG0828 Predicted E3 ubiquitin 98.4 2.8E-07 6.1E-12 93.7 3.7 49 125-174 571-634 (636)
25 KOG1493 Anaphase-promoting com 98.3 8.5E-08 1.8E-12 74.9 -0.4 50 125-174 20-81 (84)
26 COG5219 Uncharacterized conser 98.2 2.7E-07 5.9E-12 99.4 0.7 73 102-174 1446-1523(1525)
27 KOG1734 Predicted RING-contain 98.2 4.4E-07 9.5E-12 86.4 0.8 53 123-176 222-283 (328)
28 COG5574 PEX10 RING-finger-cont 98.2 7.3E-07 1.6E-11 84.7 1.7 49 125-177 215-265 (271)
29 smart00744 RINGv The RING-vari 98.1 1.9E-06 4.2E-11 62.3 1.9 42 127-170 1-49 (49)
30 PF04564 U-box: U-box domain; 98.0 2.1E-06 4.6E-11 66.8 2.0 49 125-177 4-53 (73)
31 KOG0287 Postreplication repair 98.0 9.3E-07 2E-11 86.5 -0.1 55 121-179 19-73 (442)
32 COG5432 RAD18 RING-finger-cont 98.0 2E-06 4.4E-11 82.7 1.2 52 121-176 21-72 (391)
33 PF11793 FANCL_C: FANCL C-term 98.0 2E-06 4.4E-11 66.7 1.0 50 126-175 3-67 (70)
34 KOG0804 Cytoplasmic Zn-finger 98.0 2.5E-06 5.5E-11 86.1 1.6 52 121-174 171-222 (493)
35 KOG2164 Predicted E3 ubiquitin 98.0 3.3E-06 7.1E-11 86.6 2.4 50 125-178 186-240 (513)
36 TIGR00570 cdk7 CDK-activating 97.9 9.8E-06 2.1E-10 79.3 3.6 53 125-178 3-58 (309)
37 PF13445 zf-RING_UBOX: RING-ty 97.8 6.6E-06 1.4E-10 58.0 1.5 38 128-167 1-43 (43)
38 KOG2177 Predicted E3 ubiquitin 97.8 6.1E-06 1.3E-10 76.3 1.5 44 123-170 11-54 (386)
39 KOG2930 SCF ubiquitin ligase, 97.8 6.3E-06 1.4E-10 68.0 1.3 51 125-175 46-109 (114)
40 KOG4265 Predicted E3 ubiquitin 97.8 8.5E-06 1.8E-10 80.4 2.1 47 125-175 290-337 (349)
41 KOG0827 Predicted E3 ubiquitin 97.7 1E-05 2.2E-10 80.5 1.5 48 126-173 5-55 (465)
42 KOG0311 Predicted E3 ubiquitin 97.7 3.2E-06 7E-11 83.2 -2.6 60 123-185 41-101 (381)
43 PF14835 zf-RING_6: zf-RING of 97.7 3E-05 6.4E-10 59.1 2.5 48 126-178 8-55 (65)
44 KOG4445 Uncharacterized conser 97.6 2.7E-05 5.9E-10 75.3 2.2 53 124-177 114-189 (368)
45 KOG0825 PHD Zn-finger protein 97.6 1.2E-05 2.7E-10 85.6 -0.5 50 126-176 124-173 (1134)
46 KOG1039 Predicted E3 ubiquitin 97.6 3.1E-05 6.8E-10 77.1 2.2 52 124-175 160-222 (344)
47 KOG4172 Predicted E3 ubiquitin 97.3 6.3E-05 1.4E-09 55.5 0.5 45 126-174 8-54 (62)
48 KOG1645 RING-finger-containing 97.2 0.00014 3.1E-09 73.0 2.1 49 125-173 4-55 (463)
49 KOG1785 Tyrosine kinase negati 97.1 0.00027 5.8E-09 70.9 3.0 47 126-176 370-418 (563)
50 KOG0824 Predicted E3 ubiquitin 97.1 0.00021 4.6E-09 69.3 2.0 48 126-177 8-56 (324)
51 KOG0978 E3 ubiquitin ligase in 97.1 0.00018 4E-09 77.0 1.3 49 125-177 643-692 (698)
52 KOG4159 Predicted E3 ubiquitin 96.9 0.00047 1E-08 70.0 2.3 50 122-175 81-130 (398)
53 KOG0297 TNF receptor-associate 96.6 0.0014 3E-08 66.6 2.7 50 123-175 19-68 (391)
54 KOG3970 Predicted E3 ubiquitin 96.5 0.0014 3.1E-08 61.3 2.5 69 99-177 32-108 (299)
55 KOG1941 Acetylcholine receptor 96.5 0.0011 2.4E-08 66.5 1.7 58 126-184 366-429 (518)
56 KOG0801 Predicted E3 ubiquitin 96.5 0.0008 1.7E-08 60.1 0.4 41 112-153 164-204 (205)
57 PF11789 zf-Nse: Zinc-finger o 96.5 0.0012 2.6E-08 49.3 1.3 42 124-168 10-53 (57)
58 PF05883 Baculo_RING: Baculovi 96.3 0.0009 1.9E-08 58.2 -0.2 44 125-169 26-75 (134)
59 COG5152 Uncharacterized conser 96.3 0.0017 3.6E-08 59.9 1.3 46 124-173 195-240 (259)
60 KOG1571 Predicted E3 ubiquitin 96.1 0.00073 1.6E-08 67.1 -2.3 44 124-174 304-347 (355)
61 PF12906 RINGv: RING-variant d 95.7 0.0053 1.2E-07 44.0 1.6 40 128-169 1-47 (47)
62 KOG3039 Uncharacterized conser 95.7 0.0067 1.4E-07 57.7 2.3 54 125-178 221-274 (303)
63 COG5222 Uncharacterized conser 95.6 0.0088 1.9E-07 58.3 3.2 52 126-180 275-328 (427)
64 KOG2660 Locus-specific chromos 95.6 0.0027 5.9E-08 62.5 -0.4 53 121-176 11-63 (331)
65 PF10367 Vps39_2: Vacuolar sor 95.6 0.0049 1.1E-07 50.2 1.2 33 123-157 76-108 (109)
66 KOG1002 Nucleotide excision re 95.6 0.0049 1.1E-07 64.0 1.2 50 123-176 534-588 (791)
67 KOG1428 Inhibitor of type V ad 95.4 0.0078 1.7E-07 68.4 2.2 52 123-175 3484-3545(3738)
68 PHA03096 p28-like protein; Pro 95.4 0.0064 1.4E-07 59.3 1.3 46 126-171 179-231 (284)
69 KOG2879 Predicted E3 ubiquitin 95.3 0.012 2.5E-07 56.8 2.6 48 124-174 238-287 (298)
70 KOG1813 Predicted E3 ubiquitin 95.1 0.0094 2E-07 58.0 1.4 45 125-173 241-285 (313)
71 KOG1952 Transcription factor N 95.0 0.0076 1.7E-07 65.5 0.5 51 123-173 189-246 (950)
72 KOG0826 Predicted E3 ubiquitin 95.0 0.061 1.3E-06 53.1 6.6 49 124-175 299-347 (357)
73 KOG4739 Uncharacterized protei 94.8 0.012 2.7E-07 55.6 1.3 53 127-183 5-57 (233)
74 PF04641 Rtf2: Rtf2 RING-finge 94.8 0.021 4.5E-07 54.9 2.8 60 123-183 111-170 (260)
75 KOG1814 Predicted E3 ubiquitin 94.7 0.011 2.4E-07 59.8 0.7 46 125-171 184-237 (445)
76 KOG4692 Predicted E3 ubiquitin 94.6 0.038 8.1E-07 55.1 4.1 50 123-176 420-469 (489)
77 PF14570 zf-RING_4: RING/Ubox 94.6 0.03 6.4E-07 40.5 2.5 45 128-173 1-47 (48)
78 PHA02825 LAP/PHD finger-like p 94.5 0.029 6.3E-07 50.2 2.8 49 124-176 7-61 (162)
79 PHA02862 5L protein; Provision 94.4 0.027 5.9E-07 49.6 2.4 46 126-176 3-55 (156)
80 KOG4275 Predicted E3 ubiquitin 94.3 0.0089 1.9E-07 58.1 -0.8 43 125-175 300-343 (350)
81 PF08746 zf-RING-like: RING-li 94.2 0.028 6E-07 39.6 1.7 41 128-169 1-43 (43)
82 KOG0827 Predicted E3 ubiquitin 93.3 0.0078 1.7E-07 60.5 -3.5 52 126-178 197-249 (465)
83 KOG3268 Predicted E3 ubiquitin 92.9 0.049 1.1E-06 49.6 1.4 30 147-176 190-230 (234)
84 KOG4185 Predicted E3 ubiquitin 92.8 0.066 1.4E-06 51.9 2.3 47 126-173 4-54 (296)
85 KOG2932 E3 ubiquitin ligase in 91.8 0.075 1.6E-06 52.2 1.2 43 126-173 91-133 (389)
86 COG5236 Uncharacterized conser 91.3 0.12 2.7E-06 51.4 2.2 49 122-174 58-108 (493)
87 PF14447 Prok-RING_4: Prokaryo 90.9 0.17 3.7E-06 37.6 2.1 44 126-175 8-51 (55)
88 KOG1001 Helicase-like transcri 90.6 0.095 2.1E-06 56.9 0.8 48 126-178 455-504 (674)
89 PF14446 Prok-RING_1: Prokaryo 90.1 0.24 5.2E-06 36.7 2.3 34 125-158 5-38 (54)
90 KOG3161 Predicted E3 ubiquitin 90.0 0.084 1.8E-06 56.2 -0.2 43 126-171 12-54 (861)
91 PF10272 Tmpp129: Putative tra 88.9 0.42 9.1E-06 48.2 3.8 30 148-177 312-354 (358)
92 PF07800 DUF1644: Protein of u 88.9 0.28 6.1E-06 43.9 2.3 36 125-160 2-46 (162)
93 KOG0298 DEAD box-containing he 88.3 0.11 2.4E-06 59.2 -0.9 48 123-173 1151-1198(1394)
94 KOG1100 Predicted E3 ubiquitin 88.2 0.23 5.1E-06 46.4 1.4 40 128-175 161-201 (207)
95 KOG1940 Zn-finger protein [Gen 88.2 0.26 5.5E-06 48.0 1.6 45 126-171 159-204 (276)
96 KOG1829 Uncharacterized conser 88.1 0.7 1.5E-05 49.3 4.9 42 124-169 510-556 (580)
97 KOG2114 Vacuolar assembly/sort 87.7 0.22 4.8E-06 54.7 1.0 40 126-171 841-880 (933)
98 KOG0309 Conserved WD40 repeat- 87.6 0.27 5.8E-06 53.5 1.5 23 146-168 1047-1069(1081)
99 KOG2034 Vacuolar sorting prote 87.6 0.21 4.5E-06 55.1 0.6 36 123-160 815-850 (911)
100 PF01102 Glycophorin_A: Glycop 86.1 1.2 2.6E-05 38.4 4.4 27 43-69 67-93 (122)
101 COG5175 MOT2 Transcriptional r 86.0 0.44 9.6E-06 47.5 2.0 53 124-177 13-67 (480)
102 KOG1609 Protein involved in mR 85.0 0.37 7.9E-06 46.5 0.9 51 125-176 78-136 (323)
103 KOG3800 Predicted E3 ubiquitin 82.6 0.8 1.7E-05 44.8 2.1 51 127-178 2-55 (300)
104 PF12273 RCR: Chitin synthesis 82.4 1.3 2.8E-05 38.0 3.1 7 61-67 23-29 (130)
105 PF02439 Adeno_E3_CR2: Adenovi 81.8 3.2 6.9E-05 28.6 4.1 28 40-67 5-32 (38)
106 PF03854 zf-P11: P-11 zinc fin 81.7 0.57 1.2E-05 33.8 0.5 43 127-175 4-47 (50)
107 KOG0802 E3 ubiquitin ligase [P 81.3 0.89 1.9E-05 48.2 2.1 45 125-177 479-523 (543)
108 KOG0825 PHD Zn-finger protein 81.0 0.72 1.6E-05 50.5 1.2 50 124-173 95-153 (1134)
109 KOG2817 Predicted E3 ubiquitin 79.5 1.1 2.5E-05 45.4 2.0 45 124-169 333-380 (394)
110 PF10577 UPF0560: Uncharacteri 79.3 4.2 9E-05 44.9 6.3 55 1-68 245-301 (807)
111 KOG3002 Zn finger protein [Gen 78.9 1.2 2.6E-05 43.9 2.0 43 124-174 47-91 (299)
112 COG5220 TFB3 Cdk activating ki 78.7 0.58 1.3E-05 44.7 -0.3 50 124-173 9-63 (314)
113 PF13901 DUF4206: Domain of un 78.6 1.5 3.3E-05 40.7 2.4 40 125-170 152-196 (202)
114 COG5183 SSM4 Protein involved 77.7 1.3 2.9E-05 48.7 1.9 50 124-175 11-67 (1175)
115 PF01102 Glycophorin_A: Glycop 77.4 3.3 7.1E-05 35.7 3.9 33 39-71 66-98 (122)
116 KOG0269 WD40 repeat-containing 76.8 1.3 2.9E-05 48.3 1.6 41 126-168 780-820 (839)
117 KOG3899 Uncharacterized conser 76.4 1.1 2.5E-05 43.9 0.9 32 147-178 325-369 (381)
118 KOG1812 Predicted E3 ubiquitin 75.8 1.2 2.6E-05 45.4 1.0 38 125-163 146-184 (384)
119 PF05290 Baculo_IE-1: Baculovi 73.4 2 4.4E-05 37.5 1.6 53 124-176 79-134 (140)
120 PF02009 Rifin_STEVOR: Rifin/s 73.2 4.7 0.0001 39.8 4.3 12 52-63 270-281 (299)
121 KOG4362 Transcriptional regula 73.0 1 2.2E-05 48.8 -0.3 46 126-175 22-70 (684)
122 TIGR00622 ssl1 transcription f 72.9 4.2 9.2E-05 34.5 3.4 46 125-170 55-110 (112)
123 PF07975 C1_4: TFIIH C1-like d 72.4 2.7 5.9E-05 30.8 1.9 43 128-170 2-50 (51)
124 PF06667 PspB: Phage shock pro 71.7 19 0.00042 28.4 6.6 20 46-65 8-27 (75)
125 smart00249 PHD PHD zinc finger 71.6 2.9 6.2E-05 28.0 1.8 31 127-158 1-31 (47)
126 KOG4718 Non-SMC (structural ma 70.5 1.8 3.9E-05 40.6 0.7 42 126-170 182-223 (235)
127 KOG3113 Uncharacterized conser 69.9 4.6 0.0001 39.0 3.3 56 125-182 111-166 (293)
128 KOG3053 Uncharacterized conser 69.5 2 4.3E-05 41.5 0.8 53 123-176 18-84 (293)
129 smart00132 LIM Zinc-binding do 67.9 4 8.6E-05 26.4 1.8 37 127-173 1-37 (39)
130 PF05568 ASFV_J13L: African sw 67.1 12 0.00026 33.3 5.1 12 57-68 45-56 (189)
131 PF14979 TMEM52: Transmembrane 66.2 16 0.00034 32.6 5.6 36 35-70 15-51 (154)
132 TIGR02976 phageshock_pspB phag 65.8 28 0.00061 27.5 6.5 22 44-65 6-27 (75)
133 PF15102 TMEM154: TMEM154 prot 64.5 2.4 5.2E-05 37.6 0.3 8 155-162 129-136 (146)
134 KOG3005 GIY-YIG type nuclease 64.0 3.1 6.8E-05 40.3 1.0 48 126-173 183-242 (276)
135 KOG4367 Predicted Zn-finger pr 62.7 8 0.00017 40.1 3.6 34 124-161 3-36 (699)
136 KOG2066 Vacuolar assembly/sort 62.5 2.9 6.3E-05 46.0 0.5 44 125-170 784-831 (846)
137 PF04639 Baculo_E56: Baculovir 62.4 3.9 8.5E-05 40.0 1.3 38 29-66 266-303 (305)
138 PF15179 Myc_target_1: Myc tar 61.9 16 0.00034 33.8 4.9 34 36-69 18-51 (197)
139 PF10571 UPF0547: Uncharacteri 61.6 5.2 0.00011 25.2 1.3 23 127-151 2-24 (26)
140 PF15050 SCIMP: SCIMP protein 60.6 19 0.00042 31.0 5.0 7 61-67 31-37 (133)
141 PF00628 PHD: PHD-finger; Int 60.4 4.8 0.0001 28.3 1.2 43 127-170 1-49 (51)
142 KOG3842 Adaptor protein Pellin 59.6 6.1 0.00013 39.4 2.1 50 125-175 341-415 (429)
143 KOG1815 Predicted E3 ubiquitin 56.2 12 0.00027 38.6 3.8 37 123-162 68-104 (444)
144 KOG1245 Chromatin remodeling c 55.9 7.1 0.00015 46.1 2.2 50 123-173 1106-1159(1404)
145 KOG2807 RNA polymerase II tran 55.8 8.8 0.00019 38.4 2.5 45 125-170 330-374 (378)
146 KOG4550 Predicted membrane pro 55.5 17 0.00038 37.7 4.6 49 20-68 539-587 (606)
147 TIGR01478 STEVOR variant surfa 55.4 15 0.00033 36.0 4.0 9 60-68 278-286 (295)
148 COG5109 Uncharacterized conser 55.3 6.7 0.00015 39.0 1.6 44 125-169 336-382 (396)
149 KOG1812 Predicted E3 ubiquitin 54.9 5.7 0.00012 40.5 1.1 44 125-169 306-351 (384)
150 PTZ00370 STEVOR; Provisional 53.3 17 0.00036 35.8 3.9 9 60-68 274-282 (296)
151 PF02038 ATP1G1_PLM_MAT8: ATP1 53.3 14 0.00031 27.0 2.6 25 42-66 16-40 (50)
152 TIGR01477 RIFIN variant surfac 53.2 12 0.00026 37.8 3.1 8 56-63 328-335 (353)
153 PF01363 FYVE: FYVE zinc finge 52.4 6.4 0.00014 29.6 0.8 37 124-160 8-44 (69)
154 PF00412 LIM: LIM domain; Int 52.3 9.8 0.00021 27.2 1.7 39 128-176 1-39 (58)
155 KOG3457 Sec61 protein transloc 52.3 15 0.00032 29.8 2.8 36 29-66 51-86 (88)
156 PTZ00046 rifin; Provisional 52.2 15 0.00032 37.2 3.5 9 55-63 332-340 (358)
157 PF04710 Pellino: Pellino; In 52.0 4.8 0.0001 41.1 0.0 49 125-174 328-401 (416)
158 KOG2068 MOT2 transcription fac 51.8 16 0.00036 36.4 3.7 50 126-176 250-300 (327)
159 PF05399 EVI2A: Ectropic viral 51.7 60 0.0013 30.7 7.1 27 36-62 126-152 (227)
160 KOG3039 Uncharacterized conser 51.5 8.3 0.00018 37.2 1.5 37 122-162 40-76 (303)
161 PRK09458 pspB phage shock prot 51.5 46 0.001 26.3 5.4 21 44-64 6-26 (75)
162 PF02891 zf-MIZ: MIZ/SP-RING z 51.1 11 0.00024 27.1 1.8 43 126-172 3-50 (50)
163 PF08114 PMP1_2: ATPase proteo 50.1 18 0.00038 25.4 2.5 13 56-68 26-38 (43)
164 PF15330 SIT: SHP2-interacting 50.0 22 0.00048 29.9 3.7 25 43-67 3-27 (107)
165 PF01708 Gemini_mov: Geminivir 49.9 31 0.00066 28.3 4.3 35 28-62 26-60 (91)
166 PF05393 Hum_adeno_E3A: Human 49.6 27 0.00059 28.5 3.9 13 56-68 48-60 (94)
167 smart00064 FYVE Protein presen 49.3 12 0.00025 28.1 1.8 37 125-161 10-46 (68)
168 PF15176 LRR19-TM: Leucine-ric 48.9 26 0.00057 29.2 3.8 31 38-68 15-45 (102)
169 PF13719 zinc_ribbon_5: zinc-r 47.9 8.7 0.00019 25.9 0.8 25 127-152 4-36 (37)
170 PF02009 Rifin_STEVOR: Rifin/s 47.7 25 0.00053 34.9 4.2 26 44-69 258-283 (299)
171 cd00065 FYVE FYVE domain; Zinc 45.8 16 0.00034 26.2 1.9 36 126-161 3-38 (57)
172 PLN02189 cellulose synthase 45.7 24 0.00051 40.4 4.1 52 126-177 35-90 (1040)
173 PF06679 DUF1180: Protein of u 45.6 89 0.0019 28.3 7.1 22 44-65 97-118 (163)
174 PHA03281 envelope glycoprotein 44.9 43 0.00094 35.8 5.6 17 39-55 558-574 (642)
175 PF10717 ODV-E18: Occlusion-de 44.7 32 0.00069 27.8 3.6 17 32-48 18-34 (85)
176 PF07191 zinc-ribbons_6: zinc- 43.6 5 0.00011 31.3 -1.0 41 126-175 2-42 (70)
177 PF13717 zinc_ribbon_4: zinc-r 42.8 12 0.00026 25.2 0.8 25 127-152 4-36 (36)
178 PLN02436 cellulose synthase A 41.9 30 0.00065 39.8 4.2 52 126-177 37-92 (1094)
179 PF04277 OAD_gamma: Oxaloaceta 40.9 58 0.0013 25.0 4.6 19 44-62 9-27 (79)
180 PF07010 Endomucin: Endomucin; 40.7 33 0.00072 32.7 3.7 8 58-65 208-215 (259)
181 PF00558 Vpu: Vpu protein; In 40.4 35 0.00077 27.4 3.3 20 41-60 6-25 (81)
182 PF06305 DUF1049: Protein of u 39.0 68 0.0015 23.8 4.6 30 38-67 19-48 (68)
183 PF04216 FdhE: Protein involve 38.7 7 0.00015 38.0 -1.1 44 125-169 172-217 (290)
184 PF06906 DUF1272: Protein of u 38.6 35 0.00075 25.6 2.8 44 127-175 7-53 (57)
185 PF05454 DAG1: Dystroglycan (D 38.4 10 0.00023 37.3 0.0 8 106-113 185-193 (290)
186 KOG2979 Protein involved in DN 38.1 19 0.00041 34.9 1.6 41 126-169 177-219 (262)
187 PHA02975 hypothetical protein; 37.6 86 0.0019 24.4 4.8 6 40-45 45-50 (69)
188 PF15050 SCIMP: SCIMP protein 37.4 85 0.0018 27.2 5.3 21 50-70 16-36 (133)
189 PF07010 Endomucin: Endomucin; 37.4 68 0.0015 30.7 5.1 23 47-69 194-216 (259)
190 KOG2041 WD40 repeat protein [G 37.0 21 0.00046 39.4 2.0 45 125-173 1131-1184(1189)
191 PF05605 zf-Di19: Drought indu 37.0 8.6 0.00019 27.8 -0.6 39 125-172 2-40 (54)
192 PF06365 CD34_antigen: CD34/Po 36.7 29 0.00062 32.5 2.6 12 57-68 117-128 (202)
193 PF01299 Lamp: Lysosome-associ 36.5 23 0.0005 34.7 2.1 9 60-68 290-298 (306)
194 PF05568 ASFV_J13L: African sw 36.4 52 0.0011 29.4 4.0 35 34-68 25-59 (189)
195 PF13832 zf-HC5HC2H_2: PHD-zin 36.4 27 0.00058 28.6 2.2 34 125-159 55-88 (110)
196 PF11346 DUF3149: Protein of u 35.9 85 0.0018 22.1 4.2 23 46-68 15-37 (42)
197 PF04710 Pellino: Pellino; In 35.5 12 0.00027 38.2 0.0 43 126-172 278-337 (416)
198 PF14569 zf-UDP: Zinc-binding 34.5 52 0.0011 26.3 3.3 53 125-177 9-65 (80)
199 PF12877 DUF3827: Domain of un 34.3 28 0.00061 37.8 2.4 24 44-67 273-296 (684)
200 PF07172 GRP: Glycine rich pro 34.1 38 0.00083 27.8 2.7 15 39-53 5-19 (95)
201 PRK01844 hypothetical protein; 33.9 1.1E+02 0.0023 24.1 4.9 26 42-67 7-32 (72)
202 PF07649 C1_3: C1-like domain; 33.7 21 0.00046 22.7 0.9 29 127-156 2-30 (30)
203 TIGR01477 RIFIN variant surfac 33.6 49 0.0011 33.5 3.9 23 48-70 316-338 (353)
204 PTZ00046 rifin; Provisional 33.4 50 0.0011 33.5 3.9 24 47-70 320-343 (358)
205 PTZ00382 Variant-specific surf 33.0 4.9 0.00011 33.1 -2.8 6 34-39 61-66 (96)
206 PF07406 NICE-3: NICE-3 protei 32.9 81 0.0018 29.1 4.9 19 150-168 123-143 (186)
207 PF12606 RELT: Tumour necrosis 32.5 47 0.001 24.2 2.6 17 51-67 10-26 (50)
208 PHA02849 putative transmembran 31.7 1.3E+02 0.0028 24.1 5.1 27 36-63 14-40 (82)
209 COG3763 Uncharacterized protei 31.1 1.2E+02 0.0026 23.8 4.8 27 41-67 6-32 (71)
210 KOG0824 Predicted E3 ubiquitin 30.6 20 0.00043 35.5 0.6 47 124-173 104-150 (324)
211 PF11023 DUF2614: Protein of u 30.4 1.1E+02 0.0024 26.1 4.9 16 161-176 83-98 (114)
212 PF13314 DUF4083: Domain of un 29.8 1.6E+02 0.0035 22.2 5.1 10 58-67 24-33 (58)
213 KOG3579 Predicted E3 ubiquitin 29.7 27 0.00059 34.4 1.3 41 123-163 266-306 (352)
214 KOG2113 Predicted RNA binding 29.6 35 0.00076 34.1 2.0 44 123-172 341-385 (394)
215 smart00647 IBR In Between Ring 29.4 25 0.00054 25.4 0.8 19 141-159 40-58 (64)
216 PF13260 DUF4051: Protein of u 29.2 1.9E+02 0.0042 21.0 5.2 20 49-68 11-30 (54)
217 KOG4577 Transcription factor L 29.0 17 0.00036 35.9 -0.3 40 126-175 93-132 (383)
218 PF14991 MLANA: Protein melan- 28.8 12 0.00027 31.8 -1.1 16 55-70 37-52 (118)
219 cd00350 rubredoxin_like Rubred 28.6 35 0.00077 22.3 1.3 19 147-171 7-25 (33)
220 KOG1729 FYVE finger containing 28.5 14 0.00031 36.3 -0.8 36 126-162 215-250 (288)
221 PF07219 HemY_N: HemY protein 28.1 85 0.0018 25.8 3.8 25 40-64 16-40 (108)
222 PF06750 DiS_P_DiS: Bacterial 27.5 49 0.0011 26.9 2.2 37 126-175 34-70 (92)
223 COG4741 Predicted secreted end 27.4 79 0.0017 28.5 3.6 25 43-67 6-30 (175)
224 COG5627 MMS21 DNA repair prote 27.3 34 0.00073 32.9 1.4 39 126-167 190-230 (275)
225 COG5415 Predicted integral mem 27.2 1.1E+02 0.0025 28.9 4.8 27 147-173 195-224 (251)
226 KOG1094 Discoidin domain recep 27.1 72 0.0016 34.9 3.9 9 273-281 563-571 (807)
227 PF06844 DUF1244: Protein of u 27.0 28 0.00061 26.9 0.7 12 150-161 11-22 (68)
228 PF01708 Gemini_mov: Geminivir 26.8 55 0.0012 26.8 2.4 27 40-66 34-60 (91)
229 PRK13415 flagella biosynthesis 26.8 1E+02 0.0022 29.3 4.4 27 43-69 68-94 (219)
230 PHA03099 epidermal growth fact 26.8 55 0.0012 28.6 2.5 18 51-68 113-130 (139)
231 PLN02638 cellulose synthase A 26.2 74 0.0016 36.8 4.0 52 126-177 18-73 (1079)
232 PF15065 NCU-G1: Lysosomal tra 26.1 35 0.00076 34.5 1.4 36 32-67 311-346 (350)
233 PF04689 S1FA: DNA binding pro 25.8 52 0.0011 25.4 1.9 26 34-59 8-34 (69)
234 PHA02657 hypothetical protein; 25.7 1.1E+02 0.0024 24.9 3.9 19 36-54 24-42 (95)
235 KOG4185 Predicted E3 ubiquitin 25.6 12 0.00027 36.1 -1.9 48 126-173 208-266 (296)
236 PRK00523 hypothetical protein; 25.5 1.7E+02 0.0037 23.0 4.8 11 57-67 23-33 (72)
237 COG2268 Uncharacterized protei 25.3 37 0.0008 36.3 1.4 31 35-65 6-36 (548)
238 PF11014 DUF2852: Protein of u 25.1 1.8E+02 0.0039 24.9 5.2 31 35-65 6-36 (115)
239 TIGR01195 oadG_fam sodium pump 24.8 1.6E+02 0.0034 23.5 4.6 26 42-67 10-35 (82)
240 PLN02915 cellulose synthase A 24.6 80 0.0017 36.4 3.9 53 125-177 15-71 (1044)
241 PLN02400 cellulose synthase 24.3 75 0.0016 36.8 3.6 52 126-177 37-92 (1085)
242 PF14584 DUF4446: Protein of u 24.0 1.2E+02 0.0026 27.0 4.2 24 111-134 83-106 (151)
243 PF04639 Baculo_E56: Baculovir 23.8 40 0.00087 33.2 1.3 31 27-57 268-298 (305)
244 PF09753 Use1: Membrane fusion 23.7 63 0.0014 30.7 2.6 13 50-62 237-249 (251)
245 PF02060 ISK_Channel: Slow vol 23.5 1.8E+02 0.0038 25.4 4.9 29 39-67 44-72 (129)
246 PF03911 Sec61_beta: Sec61beta 23.5 95 0.002 21.5 2.7 26 28-53 10-35 (41)
247 PRK03814 oxaloacetate decarbox 23.4 1.7E+02 0.0037 23.6 4.6 30 39-68 11-40 (85)
248 KOG2071 mRNA cleavage and poly 23.2 40 0.00086 36.2 1.2 36 123-159 511-556 (579)
249 PRK11088 rrmA 23S rRNA methylt 23.0 45 0.00098 31.7 1.5 26 126-152 3-28 (272)
250 KOG3799 Rab3 effector RIM1 and 23.0 33 0.00072 30.2 0.5 52 121-173 61-117 (169)
251 TIGR01562 FdhE formate dehydro 22.9 35 0.00076 33.9 0.7 46 125-171 184-232 (305)
252 KOG1815 Predicted E3 ubiquitin 22.9 34 0.00074 35.4 0.6 37 126-162 227-267 (444)
253 PF04423 Rad50_zn_hook: Rad50 22.9 31 0.00067 24.9 0.2 12 165-176 22-33 (54)
254 PF09723 Zn-ribbon_8: Zinc rib 22.8 34 0.00075 23.6 0.4 25 146-171 10-34 (42)
255 PF04277 OAD_gamma: Oxaloaceta 22.5 1.9E+02 0.0041 22.2 4.7 23 41-63 10-32 (79)
256 PF10497 zf-4CXXC_R1: Zinc-fin 22.4 88 0.0019 26.1 2.9 45 126-171 8-69 (105)
257 PF11057 Cortexin: Cortexin of 22.4 2.1E+02 0.0046 22.7 4.8 7 59-65 44-50 (81)
258 PRK08389 putative monovalent c 22.1 2.9E+02 0.0063 23.2 6.1 16 53-68 87-102 (114)
259 PF03908 Sec20: Sec20; InterP 22.0 82 0.0018 25.2 2.6 14 47-60 75-88 (92)
260 PF07095 IgaA: Intracellular g 21.7 2.2E+02 0.0048 31.4 6.3 12 252-263 275-286 (705)
261 PF05399 EVI2A: Ectropic viral 21.7 1.7E+02 0.0038 27.7 4.9 21 31-51 124-144 (227)
262 PF07423 DUF1510: Protein of u 21.6 61 0.0013 30.7 2.0 19 40-58 18-36 (217)
263 PF02480 Herpes_gE: Alphaherpe 21.6 31 0.00067 35.9 0.0 24 45-68 356-379 (439)
264 PF10717 ODV-E18: Occlusion-de 21.4 1.1E+02 0.0024 24.7 3.1 16 43-58 26-41 (85)
265 PF11174 DUF2970: Protein of u 21.3 1.2E+02 0.0026 22.5 3.1 24 34-57 26-49 (56)
266 PRK01253 preprotein translocas 21.1 51 0.0011 24.4 1.1 29 26-54 19-47 (54)
267 PF14316 DUF4381: Domain of un 20.8 1.9E+02 0.004 25.1 4.8 8 38-45 21-28 (146)
268 PF10083 DUF2321: Uncharacteri 20.7 36 0.00079 30.6 0.3 44 129-175 8-51 (158)
269 PHA03029 hypothetical protein; 20.7 3.2E+02 0.0069 21.8 5.5 13 53-65 20-32 (92)
270 PF07245 Phlebovirus_G2: Phleb 20.6 1.4E+02 0.0031 31.7 4.7 13 51-63 481-493 (507)
271 PF10661 EssA: WXG100 protein 20.5 1.5E+02 0.0032 26.2 4.1 14 49-62 128-141 (145)
272 PRK14710 hypothetical protein; 20.4 84 0.0018 24.7 2.2 18 34-51 6-23 (86)
273 KOG0956 PHD finger protein AF1 20.3 44 0.00095 36.7 0.8 49 125-173 117-181 (900)
274 cd04718 BAH_plant_2 BAH, or Br 20.3 60 0.0013 29.0 1.5 25 151-175 2-30 (148)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.3e-17 Score=163.60 Aligned_cols=75 Identities=37% Similarity=0.853 Sum_probs=65.4
Q ss_pred CCCCHHHHhcCCcchhhhhcCCCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCC-CCccccccccC
Q 038999 101 SGLDQAFIDALPVFLYREIMGLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNST-CPLCRGNLYIH 176 (360)
Q Consensus 101 ~gl~~~~i~~Lp~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~t-CP~CR~~l~~~ 176 (360)
..+.+..+.++|+.+|......+....|+||||+|+.++++|+|| |+|.||..||++||.++.+ ||+|++++...
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 445678899999999988766555579999999999999999999 9999999999999998855 99999977654
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.43 E-value=2.7e-14 Score=100.50 Aligned_cols=43 Identities=49% Similarity=1.254 Sum_probs=40.4
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 170 (360)
+|+||+++|..++.+..++ |+|+||.+||..|+..+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 7999999999999999998 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.38 E-value=1.9e-12 Score=122.11 Aligned_cols=76 Identities=26% Similarity=0.676 Sum_probs=59.0
Q ss_pred CCCCCHHHHhcCCcchhhh--hcCCCCCCccccccCccccCcc----ccccCCCCCccchhhhhhhhhcCCCCCcccccc
Q 038999 100 DSGLDQAFIDALPVFLYRE--IMGLKEPFDCAVCLCEFSEQDK----LRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNL 173 (360)
Q Consensus 100 ~~gl~~~~i~~Lp~~~~~~--~~~~~~~~~C~ICle~f~~~~~----~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 173 (360)
..+..+.+++.+|.+...- ........+|+||++.+..... +.+++.|+|.||..||..|+..+.+||+||..+
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 4566899999999886443 2234456799999999876431 234545999999999999999999999999987
Q ss_pred cc
Q 038999 174 YI 175 (360)
Q Consensus 174 ~~ 175 (360)
..
T Consensus 227 ~~ 228 (238)
T PHA02929 227 IS 228 (238)
T ss_pred eE
Confidence 53
No 4
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.9e-11 Score=119.88 Aligned_cols=67 Identities=27% Similarity=0.718 Sum_probs=51.0
Q ss_pred HHHhcCCcchhhhhcCCCCCCccccccCc-cccC---------ccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 106 AFIDALPVFLYREIMGLKEPFDCAVCLCE-FSEQ---------DKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 106 ~~i~~Lp~~~~~~~~~~~~~~~C~ICle~-f~~~---------~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..-+.+|+.+..+. .+++..|.||+++ |..+ .....|| |||+||.+|++.|+++++|||+||.++.-
T Consensus 270 dl~~~~~t~t~eql--~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 270 DLNAMYPTATEEQL--TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred HHHhhcchhhhhhh--cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 33444555544333 4556799999999 5544 2556788 99999999999999999999999999654
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.19 E-value=8.4e-12 Score=97.50 Aligned_cols=45 Identities=42% Similarity=0.994 Sum_probs=35.2
Q ss_pred CCccccccCccccC----------ccccccCCCCCccchhhhhhhhhcCCCCCccc
Q 038999 125 PFDCAVCLCEFSEQ----------DKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170 (360)
Q Consensus 125 ~~~C~ICle~f~~~----------~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 170 (360)
+..|+||++.|... -.+...+ |+|.||..||..||..+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45699999999322 2333345 999999999999999999999998
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.3e-11 Score=116.63 Aligned_cols=51 Identities=43% Similarity=1.185 Sum_probs=45.7
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhc-CCCCCcccccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-NSTCPLCRGNLYI 175 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 175 (360)
..-+|+|||+.|..+|.+++|| |+|.||..|++.|+.. ...||+||..+..
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3468999999999999999999 9999999999999985 5679999998754
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.84 E-value=1.6e-09 Score=74.20 Aligned_cols=44 Identities=52% Similarity=1.244 Sum_probs=36.3
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhc-CCCCCcccccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-NSTCPLCRGNL 173 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l 173 (360)
+|+||++.+ .+.+.+++ |+|.||..|+..|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 23455555 9999999999999987 67899998753
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.83 E-value=1.4e-09 Score=78.46 Aligned_cols=46 Identities=30% Similarity=0.814 Sum_probs=39.2
Q ss_pred CCccccccCccccCccccccCCCCCc-cchhhhhhhhhcCCCCCccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHA-FHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
+..|.||++.... +.++| |||. |+..|+..|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999999655 77788 9999 999999999999999999999874
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.81 E-value=2.3e-09 Score=98.02 Aligned_cols=51 Identities=27% Similarity=0.761 Sum_probs=41.1
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhc----------------CCCCCccccccccCC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS----------------NSTCPLCRGNLYIHG 177 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~----------------~~tCP~CR~~l~~~~ 177 (360)
.+..+|+||++.+.. ..+++ |||+||..||..|+.. +..||+||..+....
T Consensus 16 ~~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 16 GGDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred CCccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 456799999999865 45566 9999999999999852 347999999886644
No 10
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.80 E-value=2.3e-09 Score=85.85 Aligned_cols=51 Identities=33% Similarity=0.780 Sum_probs=38.7
Q ss_pred CCCccccccCcccc--------Ccc-ccccCCCCCccchhhhhhhhhc---CCCCCccccccc
Q 038999 124 EPFDCAVCLCEFSE--------QDK-LRLLPMCSHAFHIDCIDTWLLS---NSTCPLCRGNLY 174 (360)
Q Consensus 124 ~~~~C~ICle~f~~--------~~~-~~~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l~ 174 (360)
+++.|.||+..|.. ++. ..+...|+|.||.+||..||.. +..||+||+.+.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 35689999999872 222 2233459999999999999986 467999998764
No 11
>PHA02926 zinc finger-like protein; Provisional
Probab=98.79 E-value=2.8e-09 Score=98.88 Aligned_cols=55 Identities=27% Similarity=0.718 Sum_probs=41.5
Q ss_pred CCCCCCccccccCcccc-----CccccccCCCCCccchhhhhhhhhcC------CCCCcccccccc
Q 038999 121 GLKEPFDCAVCLCEFSE-----QDKLRLLPMCSHAFHIDCIDTWLLSN------STCPLCRGNLYI 175 (360)
Q Consensus 121 ~~~~~~~C~ICle~f~~-----~~~~~~lp~C~H~FH~~CI~~Wl~~~------~tCP~CR~~l~~ 175 (360)
......+|+||+|..-. +....+|+.|+|.||..||..|...+ .+||+||..+..
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 34455799999998633 22345676799999999999999753 359999987653
No 12
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3.7e-09 Score=101.22 Aligned_cols=49 Identities=33% Similarity=0.741 Sum_probs=42.8
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccCC
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHG 177 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (360)
...|.+||+..+. .-.+| |||+||..||..|...+..||+||..+....
T Consensus 239 ~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 239 TRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 4789999999665 67788 9999999999999999999999999876543
No 13
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.5e-09 Score=111.09 Aligned_cols=52 Identities=37% Similarity=0.826 Sum_probs=45.2
Q ss_pred CCCccccccCccccCcc--ccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 124 EPFDCAVCLCEFSEQDK--LRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~--~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
....|+||+|++..+.. ...++ |+|+||..|+..|++++++||+||..+...
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence 35789999999988655 67788 999999999999999999999999955443
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.5e-09 Score=95.08 Aligned_cols=52 Identities=29% Similarity=0.708 Sum_probs=43.2
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccCC
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHG 177 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (360)
..+.|+|||+.+... +.+..+|||+||..||...+.....||+||+.|....
T Consensus 130 ~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred cccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 457899999998863 4344469999999999999999999999998776543
No 15
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.73 E-value=4.4e-09 Score=72.13 Aligned_cols=39 Identities=38% Similarity=1.095 Sum_probs=32.7
Q ss_pred cccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcc
Q 038999 128 CAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLC 169 (360)
Q Consensus 128 C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~C 169 (360)
|+||++.+.+ .+.+++ |||+||..||..|+..+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999877 335676 99999999999999999999998
No 16
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.1e-08 Score=95.42 Aligned_cols=52 Identities=29% Similarity=0.703 Sum_probs=41.5
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcC---CCCCccccccccCC
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN---STCPLCRGNLYIHG 177 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~---~tCP~CR~~l~~~~ 177 (360)
....++|.|||+.-++ .+++. |||+||.-||.+||..+ +.||+|+..+....
T Consensus 44 ~~~~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCCceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 3456899999998444 55665 99999999999999875 35899999876554
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.57 E-value=3.1e-08 Score=69.76 Aligned_cols=44 Identities=32% Similarity=0.850 Sum_probs=37.9
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRG 171 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (360)
.|.||++.|.......+++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666777787 9999999999999866778999985
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.53 E-value=5.6e-08 Score=72.58 Aligned_cols=47 Identities=28% Similarity=0.537 Sum_probs=40.5
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
..|+||++.|.. ..+++ |||+|+..||..|+..+.+||+|+..+...
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~ 48 (63)
T smart00504 2 FLCPISLEVMKD---PVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHE 48 (63)
T ss_pred cCCcCCCCcCCC---CEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChh
Confidence 479999999887 35566 999999999999999999999999877443
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.50 E-value=4.5e-08 Score=67.36 Aligned_cols=39 Identities=46% Similarity=1.181 Sum_probs=33.2
Q ss_pred cccccCccccCccccccCCCCCccchhhhhhhhh--cCCCCCcc
Q 038999 128 CAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL--SNSTCPLC 169 (360)
Q Consensus 128 C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~--~~~tCP~C 169 (360)
|+||++.+.... .+++ |+|.||..||..|+. ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988743 4666 999999999999998 45679998
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.49 E-value=6.7e-08 Score=63.77 Aligned_cols=38 Identities=47% Similarity=1.207 Sum_probs=32.4
Q ss_pred cccccCccccCccccccCCCCCccchhhhhhhhh-cCCCCCcc
Q 038999 128 CAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL-SNSTCPLC 169 (360)
Q Consensus 128 C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~C 169 (360)
|+||++.. .....++ |+|.||..|+..|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999983 3477787 999999999999998 56679988
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.46 E-value=9.9e-08 Score=96.33 Aligned_cols=54 Identities=33% Similarity=0.609 Sum_probs=44.8
Q ss_pred CCCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccCCC
Q 038999 121 GLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHGL 178 (360)
Q Consensus 121 ~~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~ 178 (360)
.+.....|+||++.|.. ..+++ |+|.||..||..|+..+..||+||..+....+
T Consensus 22 ~Le~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQESKL 75 (397)
T ss_pred ccccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccccC
Confidence 34556799999999876 34677 99999999999999988899999998865433
No 22
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.46 E-value=7.8e-08 Score=67.37 Aligned_cols=38 Identities=34% Similarity=0.888 Sum_probs=29.4
Q ss_pred cccccCccccCccccccCCCCCccchhhhhhhhhcC----CCCCcc
Q 038999 128 CAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN----STCPLC 169 (360)
Q Consensus 128 C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~C 169 (360)
|+||++.|.+ ...|+ |||.|+..||..|+... ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999988 66677 99999999999999764 359988
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.46 E-value=8.5e-08 Score=75.52 Aligned_cols=49 Identities=33% Similarity=0.738 Sum_probs=35.1
Q ss_pred cccccCccccCccccc-cCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 128 CAVCLCEFSEQDKLRL-LPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 128 C~ICle~f~~~~~~~~-lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
|+-|...+.+++++.+ -..|+|.||.+||.+||..+..||+||+.....
T Consensus 34 C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 34 CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 3334333334444332 225999999999999999999999999987544
No 24
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.8e-07 Score=93.69 Aligned_cols=49 Identities=33% Similarity=0.855 Sum_probs=38.0
Q ss_pred CCccccccCccccC---c-----------cccccCCCCCccchhhhhhhhhc-CCCCCccccccc
Q 038999 125 PFDCAVCLCEFSEQ---D-----------KLRLLPMCSHAFHIDCIDTWLLS-NSTCPLCRGNLY 174 (360)
Q Consensus 125 ~~~C~ICle~f~~~---~-----------~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~ 174 (360)
..+|+||+..+.-- . .-.++| |+|+||..|+.+|+.. +-.||+||.++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 45899999986421 1 123456 9999999999999994 458999999875
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=8.5e-08 Score=74.93 Aligned_cols=50 Identities=34% Similarity=0.785 Sum_probs=37.0
Q ss_pred CCccccccCccc--------cCcc-ccccCCCCCccchhhhhhhhhcC---CCCCccccccc
Q 038999 125 PFDCAVCLCEFS--------EQDK-LRLLPMCSHAFHIDCIDTWLLSN---STCPLCRGNLY 174 (360)
Q Consensus 125 ~~~C~ICle~f~--------~~~~-~~~lp~C~H~FH~~CI~~Wl~~~---~tCP~CR~~l~ 174 (360)
.+.|-||.-.|. ++|. ..++..|.|.||.+||..|+... ..||+||+.+.
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 348999988886 2232 22344599999999999999754 45999998764
No 26
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.24 E-value=2.7e-07 Score=99.41 Aligned_cols=73 Identities=26% Similarity=0.595 Sum_probs=52.6
Q ss_pred CCCHHHHhcCCcchhhhhcCCCCCCccccccCccccCc-c--ccccCCCCCccchhhhhhhhhc--CCCCCccccccc
Q 038999 102 GLDQAFIDALPVFLYREIMGLKEPFDCAVCLCEFSEQD-K--LRLLPMCSHAFHIDCIDTWLLS--NSTCPLCRGNLY 174 (360)
Q Consensus 102 gl~~~~i~~Lp~~~~~~~~~~~~~~~C~ICle~f~~~~-~--~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~ 174 (360)
+..-.+.+.|-.++..........++|+||+..+..-+ . -...++|.|.||..|+..|+.. +.+||+||..+.
T Consensus 1446 ~~ngs~~D~l~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1446 KKNGSFMDLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hccchHHHHHHHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 44456667777666665556677889999999876221 1 1123459999999999999986 567999997653
No 27
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=4.4e-07 Score=86.37 Aligned_cols=53 Identities=30% Similarity=0.664 Sum_probs=43.4
Q ss_pred CCCCccccccCccccCc-------cccccCCCCCccchhhhhhhhh--cCCCCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQD-------KLRLLPMCSHAFHIDCIDTWLL--SNSTCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~-------~~~~lp~C~H~FH~~CI~~Wl~--~~~tCP~CR~~l~~~ 176 (360)
.++..|+||-..+.... +...|. |+|+||..||..|-. ++++||.|+..+..+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 45678999999886554 566787 999999999999975 578999998877554
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=7.3e-07 Score=84.70 Aligned_cols=49 Identities=33% Similarity=0.823 Sum_probs=41.0
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhh-hhhcCCC-CCccccccccCC
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDT-WLLSNST-CPLCRGNLYIHG 177 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~-Wl~~~~t-CP~CR~~l~~~~ 177 (360)
++.|+||++.... ...++ |||+||..||.. |-.++.- ||+||+......
T Consensus 215 d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 215 DYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 5789999999665 66677 999999999999 9877765 999999876654
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.06 E-value=1.9e-06 Score=62.33 Aligned_cols=42 Identities=24% Similarity=0.793 Sum_probs=32.6
Q ss_pred ccccccCccccCccccccCCCC-----CccchhhhhhhhhcC--CCCCccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCS-----HAFHIDCIDTWLLSN--STCPLCR 170 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~~--~tCP~CR 170 (360)
.|.||++ +..++...++| |. |.+|..|+..|+... .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 33444555778 85 899999999999654 4799994
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.04 E-value=2.1e-06 Score=66.85 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=38.3
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhc-CCCCCccccccccCC
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-NSTCPLCRGNLYIHG 177 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~~ 177 (360)
.+.|+||.+.|.+ ..+++ |||.|...||..||.. +.+||+|+.++....
T Consensus 4 ~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~ 53 (73)
T PF04564_consen 4 EFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESD 53 (73)
T ss_dssp GGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGG
T ss_pred ccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCccc
Confidence 4689999999988 56777 9999999999999998 889999998887644
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.04 E-value=9.3e-07 Score=86.49 Aligned_cols=55 Identities=29% Similarity=0.627 Sum_probs=46.4
Q ss_pred CCCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccCCCC
Q 038999 121 GLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHGLG 179 (360)
Q Consensus 121 ~~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~~ 179 (360)
.++.-..|-||.+-|.. ..++| |+|.||.-||...|..+..||.|+.++.+..+.
T Consensus 19 ~lD~lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr 73 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLR 73 (442)
T ss_pred hhHHHHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchhhhh
Confidence 33445689999999887 56777 999999999999999999999999988766543
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.99 E-value=2e-06 Score=82.69 Aligned_cols=52 Identities=31% Similarity=0.650 Sum_probs=42.7
Q ss_pred CCCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 121 GLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 121 ~~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
+++.-..|-||-+-|.. ..+++ |||.||.-||...|..|..||+||.+..+.
T Consensus 21 ~LDs~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 21 GLDSMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred cchhHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 44445689999998876 34455 999999999999999999999999977544
No 33
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.99 E-value=2e-06 Score=66.69 Aligned_cols=50 Identities=26% Similarity=0.790 Sum_probs=24.0
Q ss_pred CccccccCccc-cCccc-ccc--CCCCCccchhhhhhhhhc----C-------CCCCcccccccc
Q 038999 126 FDCAVCLCEFS-EQDKL-RLL--PMCSHAFHIDCIDTWLLS----N-------STCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~-~~~~~-~~l--p~C~H~FH~~CI~~Wl~~----~-------~tCP~CR~~l~~ 175 (360)
.+|.||++.+. .++.. .+. +.|++.||..||..||.. + .+||.|+.+|.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 58999999876 33221 222 259999999999999964 1 149999988753
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.97 E-value=2.5e-06 Score=86.09 Aligned_cols=52 Identities=37% Similarity=0.804 Sum_probs=40.0
Q ss_pred CCCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 121 GLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 121 ~~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
+..+..+|+||||.+...-.-++...|.|.||..|+..|- ..+||+||....
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 3456789999999998654333333499999999999994 578999997544
No 35
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.3e-06 Score=86.62 Aligned_cols=50 Identities=28% Similarity=0.606 Sum_probs=38.9
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhc-----CCCCCccccccccCCC
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-----NSTCPLCRGNLYIHGL 178 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~~l~~~~~ 178 (360)
...|+|||+.... ...+ .|||+||..||-..+.. ...||+||..|...++
T Consensus 186 ~~~CPICL~~~~~---p~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCc---cccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 5689999999655 3334 49999999999887754 3569999998877543
No 36
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.87 E-value=9.8e-06 Score=79.27 Aligned_cols=53 Identities=23% Similarity=0.515 Sum_probs=38.7
Q ss_pred CCccccccCc--cccCccccccCCCCCccchhhhhhhhh-cCCCCCccccccccCCC
Q 038999 125 PFDCAVCLCE--FSEQDKLRLLPMCSHAFHIDCIDTWLL-SNSTCPLCRGNLYIHGL 178 (360)
Q Consensus 125 ~~~C~ICle~--f~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~~ 178 (360)
...|+||+.. +.+.-++.+.+ |||.||..||+..+. ....||.|+..+....+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 3579999996 33333344444 999999999999654 45679999998876553
No 37
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.85 E-value=6.6e-06 Score=58.01 Aligned_cols=38 Identities=34% Similarity=0.852 Sum_probs=22.3
Q ss_pred cccccCccccC-ccccccCCCCCccchhhhhhhhhcC----CCCC
Q 038999 128 CAVCLCEFSEQ-DKLRLLPMCSHAFHIDCIDTWLLSN----STCP 167 (360)
Q Consensus 128 C~ICle~f~~~-~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP 167 (360)
|+||++ |... ...++|+ |||+|+.+||..++... ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 7554 4557788 99999999999999853 2476
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=6.1e-06 Score=76.35 Aligned_cols=44 Identities=39% Similarity=0.901 Sum_probs=38.5
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 170 (360)
.+...|+||++.|... .+++ |+|.||..||..++.....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 4557899999999986 7788 999999999999988556799999
No 39
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=6.3e-06 Score=68.04 Aligned_cols=51 Identities=29% Similarity=0.718 Sum_probs=36.8
Q ss_pred CCccccccCccc-------c-----Ccccc-ccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 125 PFDCAVCLCEFS-------E-----QDKLR-LLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~-------~-----~~~~~-~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
.+.|+||..-+- . .+++. .-..|+|.||.+||.+||+++..||+|.+....
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 457999976542 1 11111 122499999999999999999999999876544
No 40
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=8.5e-06 Score=80.45 Aligned_cols=47 Identities=28% Similarity=0.724 Sum_probs=41.2
Q ss_pred CCccccccCccccCccccccCCCCCc-cchhhhhhhhhcCCCCCcccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHA-FHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..+|.|||.+-.+ +.+|| |.|. .|..|.+.-..+++.||+||+++..
T Consensus 290 gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 5689999999555 78899 9997 9999999987788999999998854
No 41
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1e-05 Score=80.48 Aligned_cols=48 Identities=29% Similarity=0.845 Sum_probs=35.8
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhc---CCCCCcccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS---NSTCPLCRGNL 173 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l 173 (360)
..|.||-+-+-....+.-...|||+||..|+..|+.. +.+||+|+-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 4799995444444455555569999999999999986 35799999333
No 42
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=3.2e-06 Score=83.19 Aligned_cols=60 Identities=32% Similarity=0.536 Sum_probs=46.5
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhc-CCCCCccccccccCCCCCCCCCC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-NSTCPLCRGNLYIHGLGYENPVF 185 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~~~~~~~p~~ 185 (360)
..+..|+|||+-++. .+.++.|.|-||.+||..-+.. +++||.||+.+.........|.|
T Consensus 41 ~~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~f 101 (381)
T KOG0311|consen 41 DIQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNF 101 (381)
T ss_pred hhhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccH
Confidence 345789999999876 5556679999999999998875 67899999998765544444443
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.65 E-value=3e-05 Score=59.09 Aligned_cols=48 Identities=29% Similarity=0.707 Sum_probs=24.7
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccCCC
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHGL 178 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~ 178 (360)
..|++|.+-+.. ...+..|.|+||..||..-+.. -||+|+.+...+++
T Consensus 8 LrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 8 LRCSICFDILKE---PVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDI 55 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS-
T ss_pred cCCcHHHHHhcC---CceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHH
Confidence 479999999776 4445569999999999986653 49999988877654
No 44
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.61 E-value=2.7e-05 Score=75.31 Aligned_cols=53 Identities=26% Similarity=0.761 Sum_probs=43.9
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhc-----------------------CCCCCccccccccCC
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-----------------------NSTCPLCRGNLYIHG 177 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----------------------~~tCP~CR~~l~~~~ 177 (360)
...+|.|||.-|..++...+++ |-|.||..|+.++|.. +..||+||..|....
T Consensus 114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 3568999999999999888898 9999999999887731 234999999886543
No 45
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.59 E-value=1.2e-05 Score=85.61 Aligned_cols=50 Identities=26% Similarity=0.507 Sum_probs=40.8
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
..|++|+..|.+....-..+ |+|+||..||+.|-+...+||+||..+...
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 56888888877655444455 999999999999999999999999877543
No 46
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=3.1e-05 Score=77.06 Aligned_cols=52 Identities=29% Similarity=0.876 Sum_probs=39.6
Q ss_pred CCCccccccCccccCc----cccccCCCCCccchhhhhhhhh--c-----CCCCCcccccccc
Q 038999 124 EPFDCAVCLCEFSEQD----KLRLLPMCSHAFHIDCIDTWLL--S-----NSTCPLCRGNLYI 175 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~----~~~~lp~C~H~FH~~CI~~Wl~--~-----~~tCP~CR~~l~~ 175 (360)
....|.||++...... ...+||+|.|.||..||+.|-. + .+.||.||...-.
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 3568999999865432 2345678999999999999983 3 3679999976543
No 47
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=6.3e-05 Score=55.48 Aligned_cols=45 Identities=22% Similarity=0.529 Sum_probs=33.4
Q ss_pred CccccccCccccCccccccCCCCCc-cchhhhhhhhh-cCCCCCccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHA-FHIDCIDTWLL-SNSTCPLCRGNLY 174 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~-FH~~CI~~Wl~-~~~tCP~CR~~l~ 174 (360)
.+|.||+|.-.+ -.+- .|||. .|..|-.+-++ .+..||+||+++.
T Consensus 8 dECTICye~pvd---sVlY-tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVD---SVLY-TCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcch---HHHH-HcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 689999997333 2233 39997 89999655444 6889999999874
No 48
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00014 Score=72.97 Aligned_cols=49 Identities=31% Similarity=0.803 Sum_probs=37.2
Q ss_pred CCccccccCccccC-ccccccCCCCCccchhhhhhhhhc--CCCCCcccccc
Q 038999 125 PFDCAVCLCEFSEQ-DKLRLLPMCSHAFHIDCIDTWLLS--NSTCPLCRGNL 173 (360)
Q Consensus 125 ~~~C~ICle~f~~~-~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l 173 (360)
..+|+|||+.+... +...+.+.|+|.|-.+||+.||.+ ...||.|....
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 46899999998743 444444569999999999999963 23499996543
No 49
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.15 E-value=0.00027 Score=70.89 Aligned_cols=47 Identities=28% Similarity=0.755 Sum_probs=39.4
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhc--CCCCCccccccccC
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS--NSTCPLCRGNLYIH 176 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~~~ 176 (360)
.-|-||-|. +..+++-| |||..|..|+..|-.. .++||.||..|-..
T Consensus 370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 459999887 56688888 9999999999999754 57899999988543
No 50
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00021 Score=69.30 Aligned_cols=48 Identities=25% Similarity=0.384 Sum_probs=38.4
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhc-CCCCCccccccccCC
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-NSTCPLCRGNLYIHG 177 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~~ 177 (360)
.+|+||+....- ...|+ |+|.||..||..-... ..+|++||.+|...-
T Consensus 8 ~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 8 KECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 589999998443 45676 9999999999886655 467999999987653
No 51
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00018 Score=77.00 Aligned_cols=49 Identities=22% Similarity=0.634 Sum_probs=38.6
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhh-cCCCCCccccccccCC
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL-SNSTCPLCRGNLYIHG 177 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~ 177 (360)
-..|++|-..+.+ +.++ +|+|+||..||.+-+. ++..||.|-+.+-..+
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred ceeCCCccCchhh---HHHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 3679999977665 4444 4999999999999886 4678999988776544
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00047 Score=70.04 Aligned_cols=50 Identities=34% Similarity=0.863 Sum_probs=42.3
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
...+++|.||+..+.. ...+| |||.||..||++-+....-||.||..+..
T Consensus 81 ~~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 4567899999888776 56677 99999999999977777779999998875
No 53
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.55 E-value=0.0014 Score=66.61 Aligned_cols=50 Identities=26% Similarity=0.665 Sum_probs=41.0
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
.+...|++|...+.+.-. .+. |+|.||..|+..|+..+..||.|+..+..
T Consensus 19 ~~~l~C~~C~~vl~~p~~--~~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQ--TTT-CGHRFCAGCLLESLSNHQKCPVCRQELTQ 68 (391)
T ss_pred cccccCccccccccCCCC--CCC-CCCcccccccchhhccCcCCcccccccch
Confidence 456789999999877322 134 99999999999999999999999887654
No 54
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0014 Score=61.35 Aligned_cols=69 Identities=23% Similarity=0.529 Sum_probs=51.1
Q ss_pred cCCCCCHHHHhcCCcchhhhhcCCCCCCccccccCccccCccccccCCCCCccchhhhhhhhhc--------CCCCCccc
Q 038999 99 HDSGLDQAFIDALPVFLYREIMGLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS--------NSTCPLCR 170 (360)
Q Consensus 99 ~~~gl~~~~i~~Lp~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~tCP~CR 170 (360)
+.+-+-|+.+.-|.. .+....|..|-..+..++.+|+. |-|+||.+|++.|-.. ...||.|-
T Consensus 32 HpkCiVQSYLqWL~D--------sDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs 101 (299)
T KOG3970|consen 32 HPKCIVQSYLQWLQD--------SDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCS 101 (299)
T ss_pred CchhhHHHHHHHHhh--------cCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCC
Confidence 344444555555442 23345799999999999998865 9999999999999754 23599999
Q ss_pred cccccCC
Q 038999 171 GNLYIHG 177 (360)
Q Consensus 171 ~~l~~~~ 177 (360)
..|+.+.
T Consensus 102 ~eiFPp~ 108 (299)
T KOG3970|consen 102 QEIFPPI 108 (299)
T ss_pred CccCCCc
Confidence 9998764
No 55
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.52 E-value=0.0011 Score=66.46 Aligned_cols=58 Identities=34% Similarity=0.761 Sum_probs=42.9
Q ss_pred CccccccCcccc-CccccccCCCCCccchhhhhhhhhcC--CCCCcccc---ccccCCCCCCCCC
Q 038999 126 FDCAVCLCEFSE-QDKLRLLPMCSHAFHIDCIDTWLLSN--STCPLCRG---NLYIHGLGYENPV 184 (360)
Q Consensus 126 ~~C~ICle~f~~-~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~---~l~~~~~~~~~p~ 184 (360)
..|..|-+.+-. ++.+.-|| |.|+||..|+...|.++ .+||.||+ ++..+++.-..|+
T Consensus 366 L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~V 429 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPV 429 (518)
T ss_pred hhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCcc
Confidence 569999988754 35677798 99999999999999875 56999984 2333554444444
No 56
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0008 Score=60.13 Aligned_cols=41 Identities=24% Similarity=0.582 Sum_probs=32.8
Q ss_pred CcchhhhhcCCCCCCccccccCccccCccccccCCCCCccch
Q 038999 112 PVFLYREIMGLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHI 153 (360)
Q Consensus 112 p~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~ 153 (360)
|.+.|++..-.++.-+|.||||++..++.+..|| |-.+||+
T Consensus 164 PrlsYNdDVL~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDDVLKDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccccccchhcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 4444544444455679999999999999999999 9999996
No 57
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.47 E-value=0.0012 Score=49.28 Aligned_cols=42 Identities=21% Similarity=0.620 Sum_probs=26.9
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhc--CCCCCc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS--NSTCPL 168 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~ 168 (360)
-...|+|.+..|++. ++-. .|+|+|-...|..||.+ ...||+
T Consensus 10 ~~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 346899999998872 3333 49999999999999944 345998
No 58
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.33 E-value=0.0009 Score=58.16 Aligned_cols=44 Identities=18% Similarity=0.506 Sum_probs=33.4
Q ss_pred CCccccccCccccCccccccCCCC------CccchhhhhhhhhcCCCCCcc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCS------HAFHIDCIDTWLLSNSTCPLC 169 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~------H~FH~~CI~~Wl~~~~tCP~C 169 (360)
..+|+||++.+..++.++.++ |+ |+||.+|+.+|-..+..=|.=
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~rDPfn 75 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERNRDPFN 75 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhccCCCcc
Confidence 358999999999866777777 76 999999999994333333333
No 59
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.29 E-value=0.0017 Score=59.89 Aligned_cols=46 Identities=22% Similarity=0.540 Sum_probs=38.7
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNL 173 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 173 (360)
-++.|.||.++|.. .+++. |||.||..|...-++...+|-+|.+..
T Consensus 195 IPF~C~iCKkdy~s---pvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 195 IPFLCGICKKDYES---PVVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred Cceeehhchhhccc---hhhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence 35789999999987 44554 999999999999888889999997643
No 60
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.00073 Score=67.08 Aligned_cols=44 Identities=32% Similarity=0.666 Sum_probs=33.0
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
....|.||+++..+ ...+| |||+-| |..-- +...+||+||+.+.
T Consensus 304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 35689999999776 77788 999966 66553 22345999998774
No 61
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.74 E-value=0.0053 Score=43.96 Aligned_cols=40 Identities=30% Similarity=0.897 Sum_probs=27.0
Q ss_pred cccccCccccCccccccCCCC-----Cccchhhhhhhhhc--CCCCCcc
Q 038999 128 CAVCLCEFSEQDKLRLLPMCS-----HAFHIDCIDTWLLS--NSTCPLC 169 (360)
Q Consensus 128 C~ICle~f~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~--~~tCP~C 169 (360)
|-||++.-..++ ..+.| |. -..|..|+..|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999876655 33455 64 37899999999984 4669987
No 62
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.0067 Score=57.68 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=47.9
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccCCC
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHGL 178 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~ 178 (360)
-+.|+||.+.+.+.-.+.+|..|||+|+.+|++..+..-..||+|-.++...++
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence 367999999999988888888899999999999999999999999888776553
No 63
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.65 E-value=0.0088 Score=58.28 Aligned_cols=52 Identities=37% Similarity=0.837 Sum_probs=39.7
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhh-cCCCCCcc-ccccccCCCCC
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL-SNSTCPLC-RGNLYIHGLGY 180 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~C-R~~l~~~~~~~ 180 (360)
..|+.|..-+.+. ..++.|+|.||.+||..-|. ....||.| |++++.+++..
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~p 328 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTP 328 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCc
Confidence 6799999887763 33466999999999998876 45789999 66676665543
No 64
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.62 E-value=0.0027 Score=62.45 Aligned_cols=53 Identities=23% Similarity=0.496 Sum_probs=41.9
Q ss_pred CCCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 121 GLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 121 ~~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
..+...+|.+|-.-|.+.-.+ . .|-|.||..||...|....+||+|...+-..
T Consensus 11 ~~n~~itC~LC~GYliDATTI--~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTI--T-ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred hcccceehhhccceeecchhH--H-HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 345567899998887763332 3 4999999999999999999999998776543
No 65
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.61 E-value=0.0049 Score=50.25 Aligned_cols=33 Identities=30% Similarity=0.763 Sum_probs=27.1
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhh
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCID 157 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~ 157 (360)
.+...|++|-..+.. ....+.| |||+||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 345689999999987 4566677 99999999985
No 66
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.56 E-value=0.0049 Score=63.96 Aligned_cols=50 Identities=32% Similarity=0.642 Sum_probs=38.5
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhc-----CCCCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-----NSTCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~~l~~~ 176 (360)
++..+|-+|-+.-++ ..... |.|.||.-||..++.. +.+||.|...+..+
T Consensus 534 k~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 445789999988443 55665 9999999999888753 56899998766543
No 67
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.44 E-value=0.0078 Score=68.40 Aligned_cols=52 Identities=27% Similarity=0.623 Sum_probs=40.1
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhc-----C-----CCCCcccccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-----N-----STCPLCRGNLYI 175 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----~-----~tCP~CR~~l~~ 175 (360)
+.++.|.||+.+--.....+.|. |+|+||.+|...-|.+ . -+||+|..+|..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 34568999998876667778887 9999999999765543 2 259999987743
No 68
>PHA03096 p28-like protein; Provisional
Probab=95.40 E-value=0.0064 Score=59.33 Aligned_cols=46 Identities=28% Similarity=0.565 Sum_probs=33.6
Q ss_pred CccccccCccccC----ccccccCCCCCccchhhhhhhhhcC---CCCCcccc
Q 038999 126 FDCAVCLCEFSEQ----DKLRLLPMCSHAFHIDCIDTWLLSN---STCPLCRG 171 (360)
Q Consensus 126 ~~C~ICle~f~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~---~tCP~CR~ 171 (360)
-.|.||++..... ..-.+|+.|.|.||..||..|.... .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 4799999986542 3445688899999999999998642 34555543
No 69
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.012 Score=56.85 Aligned_cols=48 Identities=31% Similarity=0.558 Sum_probs=34.3
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhc--CCCCCccccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS--NSTCPLCRGNLY 174 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~ 174 (360)
...+|++|-+.=.. ..+..+|+|+||.-||..=+.. ..+||.|-.+..
T Consensus 238 ~~~~C~~Cg~~Pti---P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTI---PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCC---CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45789999887332 2222249999999999987654 368999965443
No 70
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.0094 Score=57.97 Aligned_cols=45 Identities=24% Similarity=0.512 Sum_probs=38.1
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNL 173 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 173 (360)
.+.|-||...|.. .+++. |+|.||..|...=++....|.+|-+..
T Consensus 241 Pf~c~icr~~f~~---pVvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYR---PVVTK-CGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Ccccccccccccc---chhhc-CCceeehhhhccccccCCcceeccccc
Confidence 4679999999987 34454 999999999999888889999997654
No 71
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.00 E-value=0.0076 Score=65.54 Aligned_cols=51 Identities=25% Similarity=0.734 Sum_probs=38.9
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcC-------CCCCcccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN-------STCPLCRGNL 173 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-------~tCP~CR~~l 173 (360)
.+..+|.||++.+...+.+--...|-|+||..||..|-++. -.||.|+...
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 45689999999988766554444588999999999998651 1399998443
No 72
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.061 Score=53.15 Aligned_cols=49 Identities=20% Similarity=0.448 Sum_probs=38.0
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
+...|+||+...+++- ++..-|-+||..||...+..+..||+=..++..
T Consensus 299 ~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASV 347 (357)
T ss_pred ccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCCcchH
Confidence 4468999999977632 233369999999999999999999987655543
No 73
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.81 E-value=0.012 Score=55.62 Aligned_cols=53 Identities=32% Similarity=0.629 Sum_probs=37.9
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccCCCCCCCC
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHGLGYENP 183 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~~~~~p 183 (360)
.|..|..--. .+...++. |.|+||..|...-. ...||+|++++....++..-|
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l~~slp 57 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIRIIQLNRSLP 57 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccCC--ccccccccceeeeeecccccc
Confidence 5777765433 66777776 99999999987632 238999999987666555433
No 74
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.79 E-value=0.021 Score=54.93 Aligned_cols=60 Identities=23% Similarity=0.419 Sum_probs=44.9
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccCCCCCCCC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHGLGYENP 183 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~~~~~p 183 (360)
...+.|||+..+|...-....+-.|||+|...||..- .....||+|-.++...++-..+|
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI~Lnp 170 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDIIPLNP 170 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEEEecC
Confidence 4568899999999665555555559999999999995 33567999988887665443333
No 75
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.011 Score=59.84 Aligned_cols=46 Identities=33% Similarity=0.764 Sum_probs=37.0
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcC--------CCCCcccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN--------STCPLCRG 171 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--------~tCP~CR~ 171 (360)
.++|.||+++.....-...+| |+|+||..|+..++..+ -.||-|..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 468999999987767777888 99999999999998642 24876644
No 76
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.038 Score=55.14 Aligned_cols=50 Identities=24% Similarity=0.517 Sum_probs=41.8
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
.++..|+||+-. .......| |+|.-|+.||.+.|...+.|=.|+..+...
T Consensus 420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeeeh
Confidence 456789999876 33356677 999999999999999999999999887754
No 77
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.57 E-value=0.03 Score=40.49 Aligned_cols=45 Identities=29% Similarity=0.613 Sum_probs=21.7
Q ss_pred cccccCccccCccccccC-CCCCccchhhhhhhhh-cCCCCCcccccc
Q 038999 128 CAVCLCEFSEQDKLRLLP-MCSHAFHIDCIDTWLL-SNSTCPLCRGNL 173 (360)
Q Consensus 128 C~ICle~f~~~~~~~~lp-~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l 173 (360)
|++|.+++...+ ....| .|++.++..|...-+. ....||-||++.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984333 23333 3789999999888775 467899999864
No 78
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.50 E-value=0.029 Score=50.18 Aligned_cols=49 Identities=22% Similarity=0.626 Sum_probs=35.1
Q ss_pred CCCccccccCccccCccccccC-CCCC---ccchhhhhhhhhcC--CCCCccccccccC
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLP-MCSH---AFHIDCIDTWLLSN--STCPLCRGNLYIH 176 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp-~C~H---~FH~~CI~~Wl~~~--~tCP~CR~~l~~~ 176 (360)
....|-||.++-.. . ..| .|.. ..|.+|+..|+... .+|++|+.++...
T Consensus 7 ~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 45689999988432 2 234 2434 57999999999754 4699999887554
No 79
>PHA02862 5L protein; Provisional
Probab=94.41 E-value=0.027 Score=49.60 Aligned_cols=46 Identities=26% Similarity=0.607 Sum_probs=34.5
Q ss_pred CccccccCccccCccccccCCCC-----Cccchhhhhhhhhc--CCCCCccccccccC
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCS-----HAFHIDCIDTWLLS--NSTCPLCRGNLYIH 176 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~--~~tCP~CR~~l~~~ 176 (360)
..|-||+++-.+ . .-| |. ...|..|+..|+.. +.+|++|+.++...
T Consensus 3 diCWIC~~~~~e--~--~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 3 DICWICNDVCDE--R--NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CEEEEecCcCCC--C--ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 479999998433 2 244 54 57999999999964 45699999987654
No 80
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.0089 Score=58.07 Aligned_cols=43 Identities=26% Similarity=0.603 Sum_probs=33.4
Q ss_pred CCccccccCccccCccccccCCCCCc-cchhhhhhhhhcCCCCCcccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHA-FHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..-|+||++. ...+..|+ |||. -|.+|-..- ..||+||+-|..
T Consensus 300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKRM----NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcC---CcceEEee-cCcEEeehhhcccc----ccCchHHHHHHH
Confidence 4679999998 44588898 9995 788886552 489999987653
No 81
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.24 E-value=0.028 Score=39.55 Aligned_cols=41 Identities=24% Similarity=0.645 Sum_probs=25.2
Q ss_pred cccccCccccCccccccCCCCCccchhhhhhhhhcCC--CCCcc
Q 038999 128 CAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS--TCPLC 169 (360)
Q Consensus 128 C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCP~C 169 (360)
|.+|.+....++...... |+=.+|..|+..++..+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778888877776665444 999999999999998765 69988
No 82
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=0.0078 Score=60.47 Aligned_cols=52 Identities=25% Similarity=0.629 Sum_probs=45.0
Q ss_pred CccccccCccccC-ccccccCCCCCccchhhhhhhhhcCCCCCccccccccCCC
Q 038999 126 FDCAVCLCEFSEQ-DKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHGL 178 (360)
Q Consensus 126 ~~C~ICle~f~~~-~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~ 178 (360)
..|+||.+.+... +++..+- |+|.+|..||..||....-||.||..+...++
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~~ 249 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKNGF 249 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhhhH
Confidence 5799999999877 7777786 99999999999999998899999998865443
No 83
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.049 Score=49.63 Aligned_cols=30 Identities=30% Similarity=0.948 Sum_probs=24.3
Q ss_pred CCCccchhhhhhhhhc-----C------CCCCccccccccC
Q 038999 147 CSHAFHIDCIDTWLLS-----N------STCPLCRGNLYIH 176 (360)
Q Consensus 147 C~H~FH~~CI~~Wl~~-----~------~tCP~CR~~l~~~ 176 (360)
||.-||.-|+..||+. + ..||.|-.++...
T Consensus 190 CgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 190 CGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred cCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 9999999999999964 1 1499998877543
No 84
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.066 Score=51.86 Aligned_cols=47 Identities=30% Similarity=0.739 Sum_probs=37.6
Q ss_pred CccccccCccccCc---cccccCCCCCccchhhhhhhhhcC-CCCCcccccc
Q 038999 126 FDCAVCLCEFSEQD---KLRLLPMCSHAFHIDCIDTWLLSN-STCPLCRGNL 173 (360)
Q Consensus 126 ~~C~ICle~f~~~~---~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l 173 (360)
..|-||-++|...+ ..++|. |||.|+..|+..-+... ..||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 47999999998764 455665 99999999998866543 4599999985
No 85
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.075 Score=52.22 Aligned_cols=43 Identities=30% Similarity=0.719 Sum_probs=30.2
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNL 173 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 173 (360)
-.|--|--. ....-|..| |.|+||.+|... ..-+.||.|-..+
T Consensus 91 HfCd~Cd~P--I~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFP--IAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCc--ceeeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence 347767443 344567788 999999999765 3356899996554
No 86
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.28 E-value=0.12 Score=51.44 Aligned_cols=49 Identities=27% Similarity=0.560 Sum_probs=38.5
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhh--hhhcCCCCCccccccc
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDT--WLLSNSTCPLCRGNLY 174 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~--Wl~~~~tCP~CR~~l~ 174 (360)
..+...|.||-+.+.- ..++| |+|..|..|... .|..++.||+||...-
T Consensus 58 DEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 58 DEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 4456789999988654 66788 999999999754 3567889999998543
No 87
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=90.89 E-value=0.17 Score=37.55 Aligned_cols=44 Identities=25% Similarity=0.554 Sum_probs=31.5
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..|-.|... +.+-.++| |+|+.+..|.+-+ +-+-||+|-+++..
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccC
Confidence 356666554 33456777 9999999998875 44679999877654
No 88
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.59 E-value=0.095 Score=56.93 Aligned_cols=48 Identities=29% Similarity=0.710 Sum_probs=37.4
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcC--CCCCccccccccCCC
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN--STCPLCRGNLYIHGL 178 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~~~~~ 178 (360)
..|.||++ .+.+.+.+ |+|.||..|+..-+... .-||+||..+....+
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 69999999 34455666 99999999998877643 349999998876543
No 89
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=90.12 E-value=0.24 Score=36.69 Aligned_cols=34 Identities=29% Similarity=0.753 Sum_probs=29.5
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhh
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDT 158 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~ 158 (360)
...|.+|-+.|.+++.+.+.|.|+-.+|..|.+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 3579999999998888888888999999999654
No 90
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=0.084 Score=56.24 Aligned_cols=43 Identities=26% Similarity=0.564 Sum_probs=33.6
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRG 171 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (360)
..|.||+..|.....+.+...|||..|.+|+..- -+.+|| |..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 4799999999877655555569999999999873 467899 543
No 91
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=88.94 E-value=0.42 Score=48.21 Aligned_cols=30 Identities=27% Similarity=0.857 Sum_probs=22.6
Q ss_pred CCccchhhhhhhhhc-------------CCCCCccccccccCC
Q 038999 148 SHAFHIDCIDTWLLS-------------NSTCPLCRGNLYIHG 177 (360)
Q Consensus 148 ~H~FH~~CI~~Wl~~-------------~~tCP~CR~~l~~~~ 177 (360)
.=.+|.+|+-+|+.. +-+||+||+.+...+
T Consensus 312 RPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 312 RPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred cchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 345789999999854 336999999887643
No 92
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=88.90 E-value=0.28 Score=43.92 Aligned_cols=36 Identities=22% Similarity=0.499 Sum_probs=22.2
Q ss_pred CCccccccCccccCccccccC--------CCCC-ccchhhhhhhh
Q 038999 125 PFDCAVCLCEFSEQDKLRLLP--------MCSH-AFHIDCIDTWL 160 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp--------~C~H-~FH~~CI~~Wl 160 (360)
+..|+||||-=.+...+.... .|+. .=|..|+++.-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHH
Confidence 458999999855432221111 1554 45899999875
No 93
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.29 E-value=0.11 Score=59.21 Aligned_cols=48 Identities=29% Similarity=0.717 Sum_probs=38.4
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNL 173 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 173 (360)
.+...|.||++.+.....+ . .|+|.+|..|+..|+..+..||+|....
T Consensus 1151 ~~~~~c~ic~dil~~~~~I--~-~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGI--A-GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred hcccchHHHHHHHHhcCCe--e-eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 3456899999998742222 2 3999999999999999999999997543
No 94
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.20 E-value=0.23 Score=46.38 Aligned_cols=40 Identities=30% Similarity=0.657 Sum_probs=30.7
Q ss_pred cccccCccccCccccccCCCCCc-cchhhhhhhhhcCCCCCcccccccc
Q 038999 128 CAVCLCEFSEQDKLRLLPMCSHA-FHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 128 C~ICle~f~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
|-.|.+. ...+.++| |.|+ +|..|-.. -.+||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence 8888777 55588899 9985 99999665 3569999876543
No 95
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=88.18 E-value=0.26 Score=48.03 Aligned_cols=45 Identities=27% Similarity=0.691 Sum_probs=37.4
Q ss_pred CccccccCccccCc-cccccCCCCCccchhhhhhhhhcCCCCCcccc
Q 038999 126 FDCAVCLCEFSEQD-KLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRG 171 (360)
Q Consensus 126 ~~C~ICle~f~~~~-~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (360)
..|+||.+.+.... .+..++ |+|.-|..|+......+-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 45999999866543 556676 9999999999998888889999987
No 96
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=88.08 E-value=0.7 Score=49.34 Aligned_cols=42 Identities=29% Similarity=0.783 Sum_probs=28.1
Q ss_pred CCCccccccCc-----cccCccccccCCCCCccchhhhhhhhhcCCCCCcc
Q 038999 124 EPFDCAVCLCE-----FSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLC 169 (360)
Q Consensus 124 ~~~~C~ICle~-----f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~C 169 (360)
..+.|.+|... |+.....+... |+++||..|+.. ....||.|
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~-C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCST-CLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHH-HHHHHHHHHHhc---cCCCCCch
Confidence 34778888432 44333344454 999999999665 34459999
No 97
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.74 E-value=0.22 Score=54.68 Aligned_cols=40 Identities=23% Similarity=0.728 Sum_probs=29.7
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRG 171 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (360)
..|..|--.+... ..-. .|+|.||.+|+. .....||-|+.
T Consensus 841 skCs~C~~~LdlP--~VhF-~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHF-LCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccc--eeee-ecccHHHHHhhc---cCcccCCccch
Confidence 4799997775542 2222 399999999998 45567999986
No 98
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.59 E-value=0.27 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.904 Sum_probs=21.3
Q ss_pred CCCCccchhhhhhhhhcCCCCCc
Q 038999 146 MCSHAFHIDCIDTWLLSNSTCPL 168 (360)
Q Consensus 146 ~C~H~FH~~CI~~Wl~~~~tCP~ 168 (360)
.|+|+.|..|...|+.....||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 49999999999999999999984
No 99
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.55 E-value=0.21 Score=55.12 Aligned_cols=36 Identities=25% Similarity=0.600 Sum_probs=28.6
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhh
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWL 160 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl 160 (360)
..+..|.+|...+... .-.+.| |||.||.+||..-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 4567899999887763 455677 99999999997765
No 100
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=86.10 E-value=1.2 Score=38.36 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 038999 43 IIVILAVVFFISGVLQLLIRFVIRRRS 69 (360)
Q Consensus 43 IIvIL~ivf~i~~ll~llvr~l~Rrr~ 69 (360)
+.+|+.+++.+++++.++.++++|+|+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444444444443
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=86.03 E-value=0.44 Score=47.49 Aligned_cols=53 Identities=25% Similarity=0.415 Sum_probs=36.3
Q ss_pred CCCccccccCccccCcccc-ccCCCCCccchhhhhhhhh-cCCCCCccccccccCC
Q 038999 124 EPFDCAVCLCEFSEQDKLR-LLPMCSHAFHIDCIDTWLL-SNSTCPLCRGNLYIHG 177 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~-~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~ 177 (360)
+.+.|+.|++++...|+-- -.+ ||...|.-|...--+ -+..||-||+......
T Consensus 13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 3456999999988666433 344 888777777655322 2567999998765543
No 102
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=84.99 E-value=0.37 Score=46.53 Aligned_cols=51 Identities=29% Similarity=0.644 Sum_probs=36.9
Q ss_pred CCccccccCccccCcc-ccccCCCC-----Cccchhhhhhhhh--cCCCCCccccccccC
Q 038999 125 PFDCAVCLCEFSEQDK-LRLLPMCS-----HAFHIDCIDTWLL--SNSTCPLCRGNLYIH 176 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~-~~~lp~C~-----H~FH~~CI~~Wl~--~~~tCP~CR~~l~~~ 176 (360)
+..|-||.++...... ..+.| |. +..|..|+..|+. ...+|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4689999998654332 33455 64 5689999999998 455699998766544
No 103
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=82.65 E-value=0.8 Score=44.77 Aligned_cols=51 Identities=24% Similarity=0.537 Sum_probs=37.0
Q ss_pred ccccccCc-cccC-ccccccCCCCCccchhhhhhhhhcC-CCCCccccccccCCC
Q 038999 127 DCAVCLCE-FSEQ-DKLRLLPMCSHAFHIDCIDTWLLSN-STCPLCRGNLYIHGL 178 (360)
Q Consensus 127 ~C~ICle~-f~~~-~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~~~~ 178 (360)
.|++|... |-+. -.+.+-+ |+|..|..|++.-+... ..||-|-..+...++
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 59999876 2333 3444445 99999999999988765 569999877765544
No 104
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=82.39 E-value=1.3 Score=38.05 Aligned_cols=7 Identities=43% Similarity=0.178 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 038999 61 IRFVIRR 67 (360)
Q Consensus 61 vr~l~Rr 67 (360)
.+...|+
T Consensus 23 ~rRR~r~ 29 (130)
T PF12273_consen 23 NRRRRRR 29 (130)
T ss_pred HHHHhhc
Confidence 3333333
No 105
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=81.77 E-value=3.2 Score=28.59 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038999 40 ILFIIVILAVVFFISGVLQLLIRFVIRR 67 (360)
Q Consensus 40 iliIIvIL~ivf~i~~ll~llvr~l~Rr 67 (360)
++-||+.+++.+.++++..++..++.|+
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3334444444444444434443344443
No 106
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=81.67 E-value=0.57 Score=33.84 Aligned_cols=43 Identities=28% Similarity=0.719 Sum_probs=24.6
Q ss_pred ccccccCccccCccccccCCCC-CccchhhhhhhhhcCCCCCcccccccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCS-HAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~-H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
-|--|+-+... + . .|. |..|..|+..-|.....||+|..++..
T Consensus 4 nCKsCWf~~k~---L--i-~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFANKG---L--I-KCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S--SS---E--E-E-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhcCCC---e--e-eecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 46666655332 2 2 275 999999999998888999999988754
No 107
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.32 E-value=0.89 Score=48.22 Aligned_cols=45 Identities=36% Similarity=0.844 Sum_probs=38.1
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccCC
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHG 177 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (360)
...|.||++++ ..+..+ |. |..|+..|+..+.+||+|+..+..+.
T Consensus 479 ~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 479 NDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccc
Confidence 46899999998 456666 88 99999999999999999998776654
No 108
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.01 E-value=0.72 Score=50.48 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=36.2
Q ss_pred CCCccccccCccccCc---cccccCCCCCccchhhhhhhhhc------CCCCCcccccc
Q 038999 124 EPFDCAVCLCEFSEQD---KLRLLPMCSHAFHIDCIDTWLLS------NSTCPLCRGNL 173 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~---~~~~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR~~l 173 (360)
+...|.||.-+|..++ .+..+.+|.|.||..||..|+.+ +-.|++|..-|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 3567999998888732 22223359999999999999854 44588887755
No 109
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.47 E-value=1.1 Score=45.40 Aligned_cols=45 Identities=27% Similarity=0.550 Sum_probs=37.8
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcCC---CCCcc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS---TCPLC 169 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~---tCP~C 169 (360)
..+.|||=.+.-..+.....|. |||+...+-|.+-.+... -||.|
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 3478999999988888888898 999999999999655433 49999
No 110
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=79.29 E-value=4.2 Score=44.93 Aligned_cols=55 Identities=18% Similarity=0.328 Sum_probs=27.1
Q ss_pred CcccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Q 038999 1 MSYFPSHSLLASAPSSSSSLPYNSDYQKESSSGNKISPA-ILFIIVILA-VVFFISGVLQLLIRFVIRRR 68 (360)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sSS~~~isp~-iliIIvIL~-ivf~i~~ll~llvr~l~Rrr 68 (360)
+.|++..++|..+.+.- .. .. .|... .++++.||. ++|++++++++|+.+|.|++
T Consensus 245 LGYWiAA~~P~~~G~~~----------~~-~~--Di~~YHT~fLl~ILG~~~livl~lL~vLl~yCrrkc 301 (807)
T PF10577_consen 245 LGYWIAAMSPSSSGPVV----------ST-GS--DITTYHTVFLLAILGGTALIVLILLCVLLCYCRRKC 301 (807)
T ss_pred cchhhhccCccccCccc----------cc-CC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 45777777665554411 11 11 44442 344445554 44555555666655554443
No 111
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=78.94 E-value=1.2 Score=43.93 Aligned_cols=43 Identities=28% Similarity=0.688 Sum_probs=32.8
Q ss_pred CCCccccccCccccCccccccCCC--CCccchhhhhhhhhcCCCCCccccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMC--SHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C--~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
+-.+|+||.+.+... +.. | ||+-|..|-. +....||.||.++.
T Consensus 47 ~lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCccc----cee-cCCCcEehhhhhh---hhcccCCccccccc
Confidence 346899999998873 333 5 6999999965 35677999998875
No 112
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=78.68 E-value=0.58 Score=44.67 Aligned_cols=50 Identities=28% Similarity=0.582 Sum_probs=36.9
Q ss_pred CCCccccccCcc--ccCccccccCCCCCccchhhhhhhhhcC-CCCC--cccccc
Q 038999 124 EPFDCAVCLCEF--SEQDKLRLLPMCSHAFHIDCIDTWLLSN-STCP--LCRGNL 173 (360)
Q Consensus 124 ~~~~C~ICle~f--~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP--~CR~~l 173 (360)
.+..|+||..+- .++.++.+-|.|-|-.|..|+++-+... ..|| -|-+-|
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 345899999873 3444555566799999999999998765 4699 785533
No 113
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=78.58 E-value=1.5 Score=40.65 Aligned_cols=40 Identities=30% Similarity=0.807 Sum_probs=29.2
Q ss_pred CCccccccCc-----cccCccccccCCCCCccchhhhhhhhhcCCCCCccc
Q 038999 125 PFDCAVCLCE-----FSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170 (360)
Q Consensus 125 ~~~C~ICle~-----f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 170 (360)
.+.|.||-+. |+.+ .+...+.|+.+||..|... ..||-|-
T Consensus 152 GfiCe~C~~~~~IfPF~~~-~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQID-TTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCC-CeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 4789999864 4442 4444556999999999763 6799994
No 114
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=77.72 E-value=1.3 Score=48.69 Aligned_cols=50 Identities=24% Similarity=0.680 Sum_probs=37.1
Q ss_pred CCCccccccCccccCccccccCCCC-----CccchhhhhhhhhcC--CCCCcccccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCS-----HAFHIDCIDTWLLSN--STCPLCRGNLYI 175 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~~--~tCP~CR~~l~~ 175 (360)
+...|-||..+=..++.+ .-| |. ...|.+|+..|+.-. ..|-+|+.++.-
T Consensus 11 d~~~CRICr~e~~~d~pL-fhP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPL-FHP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred cchhceeecCCCCCCCcC-ccc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 347899999997666554 344 55 358999999999743 459999987643
No 115
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=77.40 E-value=3.3 Score=35.71 Aligned_cols=33 Identities=27% Similarity=0.222 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 038999 39 AILFIIVILAVVFFISGVLQLLIRFVIRRRSSS 71 (360)
Q Consensus 39 ~iliIIvIL~ivf~i~~ll~llvr~l~Rrr~~~ 71 (360)
.++||+.+++.++++++++.+++|.++|+....
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~ 98 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKKSSSD 98 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS------
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 578888888878888888888888887777653
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.77 E-value=1.3 Score=48.29 Aligned_cols=41 Identities=22% Similarity=0.478 Sum_probs=30.8
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPL 168 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~ 168 (360)
..|.+|-..+.. .....+.|+|.-|..|+..|+..+.-||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 468888665443 22234469999999999999999888876
No 117
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.37 E-value=1.1 Score=43.85 Aligned_cols=32 Identities=25% Similarity=0.766 Sum_probs=24.8
Q ss_pred CCCccchhhhhhhhhc-------------CCCCCccccccccCCC
Q 038999 147 CSHAFHIDCIDTWLLS-------------NSTCPLCRGNLYIHGL 178 (360)
Q Consensus 147 C~H~FH~~CI~~Wl~~-------------~~tCP~CR~~l~~~~~ 178 (360)
|.-.+|..|+.+|+.. .-+||+||+.+...+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 5567889999999743 4479999999877654
No 118
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.83 E-value=1.2 Score=45.42 Aligned_cols=38 Identities=26% Similarity=0.676 Sum_probs=28.2
Q ss_pred CCccccccCcc-ccCccccccCCCCCccchhhhhhhhhcC
Q 038999 125 PFDCAVCLCEF-SEQDKLRLLPMCSHAFHIDCIDTWLLSN 163 (360)
Q Consensus 125 ~~~C~ICle~f-~~~~~~~~lp~C~H~FH~~CI~~Wl~~~ 163 (360)
..+|.||..+. ..++..... .|+|.||.+|+...+..+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhhh
Confidence 56899999444 443555544 599999999999888643
No 119
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=73.45 E-value=2 Score=37.55 Aligned_cols=53 Identities=19% Similarity=0.563 Sum_probs=35.5
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhh-hhh--cCCCCCccccccccC
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDT-WLL--SNSTCPLCRGNLYIH 176 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~-Wl~--~~~tCP~CR~~l~~~ 176 (360)
.-.+|.||.|.-.+..-+.--.-||-..|..|-.. |-. .+..||.|+.++-..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 34699999998655433322224888888887654 432 367799999877554
No 120
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=73.16 E-value=4.7 Score=39.83 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 038999 52 FISGVLQLLIRF 63 (360)
Q Consensus 52 ~i~~ll~llvr~ 63 (360)
+|+++++|+.|+
T Consensus 270 LIMvIIYLILRY 281 (299)
T PF02009_consen 270 LIMVIIYLILRY 281 (299)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 121
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=73.02 E-value=1 Score=48.84 Aligned_cols=46 Identities=30% Similarity=0.775 Sum_probs=35.5
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCC---CCCcccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS---TCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~---tCP~CR~~l~~ 175 (360)
.+|+||+..+... ..+ +|.|.|+..|+..-|.... .||+|+..+..
T Consensus 22 lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 4899999998774 345 4999999999987665544 59999966543
No 122
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.86 E-value=4.2 Score=34.53 Aligned_cols=46 Identities=24% Similarity=0.410 Sum_probs=34.4
Q ss_pred CCccccccCccccCc----------cccccCCCCCccchhhhhhhhhcCCCCCccc
Q 038999 125 PFDCAVCLCEFSEQD----------KLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170 (360)
Q Consensus 125 ~~~C~ICle~f~~~~----------~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 170 (360)
...|--|+..|.... ....-+.|++.|+.+|=..+-..-.+||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 346999999986531 1223456999999999888777778899995
No 123
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=72.38 E-value=2.7 Score=30.76 Aligned_cols=43 Identities=28% Similarity=0.523 Sum_probs=21.8
Q ss_pred cccccCccccCc------cccccCCCCCccchhhhhhhhhcCCCCCccc
Q 038999 128 CAVCLCEFSEQD------KLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170 (360)
Q Consensus 128 C~ICle~f~~~~------~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 170 (360)
|--|+..|.... ....-+.|++.|+.+|=.--=..-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555666666542 3344567999999999443223346799983
No 124
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=71.69 E-value=19 Score=28.43 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038999 46 ILAVVFFISGVLQLLIRFVI 65 (360)
Q Consensus 46 IL~ivf~i~~ll~llvr~l~ 65 (360)
+.+++|++++...+++-.|.
T Consensus 8 ~plivf~ifVap~WL~lHY~ 27 (75)
T PF06667_consen 8 VPLIVFMIFVAPIWLILHYR 27 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333433333334443443
No 125
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=70.46 E-value=1.8 Score=40.61 Aligned_cols=42 Identities=31% Similarity=0.804 Sum_probs=34.4
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 170 (360)
..|.+|.+-.-.+ ++.- .|+--+|..|+...+.+...||.|-
T Consensus 182 k~Cn~Ch~LvIqg--~rCg-~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCG-SCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHhHhHHHhhee--eccC-cccchhhhHHHHHHhcccCcCCchh
Confidence 4899999886654 3333 4888999999999999989999993
No 127
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.93 E-value=4.6 Score=38.96 Aligned_cols=56 Identities=20% Similarity=0.318 Sum_probs=40.3
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccCCCCCCC
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHGLGYEN 182 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~~~~~ 182 (360)
.+.|+|---+|........+-.|||+|-..-+..- ...+|++|.+.+...+.-..|
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEeeC
Confidence 47899988887765444444459999999888773 467899998877665543333
No 128
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.49 E-value=2 Score=41.47 Aligned_cols=53 Identities=21% Similarity=0.582 Sum_probs=35.7
Q ss_pred CCCCccccccCccccCcccc-ccCCCC-----CccchhhhhhhhhcC--------CCCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLR-LLPMCS-----HAFHIDCIDTWLLSN--------STCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~-~lp~C~-----H~FH~~CI~~Wl~~~--------~tCP~CR~~l~~~ 176 (360)
..+..|=||+..=+++...- +-| |. |-.|..|+..|+..+ -+||-|+......
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred ccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 34468999998744433221 233 63 789999999999532 2599999876543
No 129
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=67.87 E-value=4 Score=26.39 Aligned_cols=37 Identities=22% Similarity=0.475 Sum_probs=24.9
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNL 173 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 173 (360)
.|..|.+.+...+... .. =+..||..| ..|..|..+|
T Consensus 1 ~C~~C~~~i~~~~~~~-~~-~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVL-RA-LGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEE-Ee-CCccccccC--------CCCcccCCcC
Confidence 3788888877652322 22 468899888 5678887655
No 130
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=67.13 E-value=12 Score=33.33 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhc
Q 038999 57 LQLLIRFVIRRR 68 (360)
Q Consensus 57 l~llvr~l~Rrr 68 (360)
+++++.++.+|+
T Consensus 45 iivli~lcssRK 56 (189)
T PF05568_consen 45 IIVLIYLCSSRK 56 (189)
T ss_pred HHHHHHHHhhhh
Confidence 334444555444
No 131
>PF14979 TMEM52: Transmembrane 52
Probab=66.17 E-value=16 Score=32.57 Aligned_cols=36 Identities=14% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC
Q 038999 35 KISPAILFIIV-ILAVVFFISGVLQLLIRFVIRRRSS 70 (360)
Q Consensus 35 ~isp~iliIIv-IL~ivf~i~~ll~llvr~l~Rrr~~ 70 (360)
+.+..+.|.++ +++++++++++....+||++.||+.
T Consensus 15 ~W~~LWyIwLill~~~llLLCG~ta~C~rfCClrk~~ 51 (154)
T PF14979_consen 15 RWSSLWYIWLILLIGFLLLLCGLTASCVRFCCLRKQA 51 (154)
T ss_pred ceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44444444444 4445566788888999966666653
No 132
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=65.78 E-value=28 Score=27.46 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038999 44 IVILAVVFFISGVLQLLIRFVI 65 (360)
Q Consensus 44 IvIL~ivf~i~~ll~llvr~l~ 65 (360)
+++-+++|++++...+++.+|.
T Consensus 6 l~~Pliif~ifVap~wl~lHY~ 27 (75)
T TIGR02976 6 LAIPLIIFVIFVAPLWLILHYR 27 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3343344444434444444444
No 133
>PF15102 TMEM154: TMEM154 protein family
Probab=64.53 E-value=2.4 Score=37.59 Aligned_cols=8 Identities=38% Similarity=0.866 Sum_probs=4.2
Q ss_pred hhhhhhhc
Q 038999 155 CIDTWLLS 162 (360)
Q Consensus 155 CI~~Wl~~ 162 (360)
=|++|+.+
T Consensus 129 eldkwm~s 136 (146)
T PF15102_consen 129 ELDKWMNS 136 (146)
T ss_pred HHHhHHHh
Confidence 35666543
No 134
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=64.00 E-value=3.1 Score=40.33 Aligned_cols=48 Identities=33% Similarity=0.666 Sum_probs=34.7
Q ss_pred CccccccCccccCccccc---cCCCCCccchhhhhhhhhc---------CCCCCcccccc
Q 038999 126 FDCAVCLCEFSEQDKLRL---LPMCSHAFHIDCIDTWLLS---------NSTCPLCRGNL 173 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~---lp~C~H~FH~~CI~~Wl~~---------~~tCP~CR~~l 173 (360)
.+|.+|.+++.+.+..+. -+.|+-++|..|+..-+.. ...||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 589999999955444433 2358899999999984432 33599998855
No 135
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=62.73 E-value=8 Score=40.07 Aligned_cols=34 Identities=35% Similarity=0.736 Sum_probs=27.9
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhh
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL 161 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~ 161 (360)
+...|+||..-|.+ .++|| |+|..|..|...-+.
T Consensus 3 eelkc~vc~~f~~e---piil~-c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE---PIILP-CSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhccC---ceEee-cccHHHHHHHHhhcc
Confidence 44679999998877 77898 999999999876543
No 136
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.48 E-value=2.9 Score=45.95 Aligned_cols=44 Identities=23% Similarity=0.537 Sum_probs=32.3
Q ss_pred CCccccccCccccC----ccccccCCCCCccchhhhhhhhhcCCCCCccc
Q 038999 125 PFDCAVCLCEFSEQ----DKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170 (360)
Q Consensus 125 ~~~C~ICle~f~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 170 (360)
...|.-|.+..... +.+.++. |+|+||..|+..-..++. |-.|-
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChhh
Confidence 34799998886522 3456676 999999999988777665 66663
No 137
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=62.39 E-value=3.9 Score=40.04 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=21.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 29 ESSSGNKISPAILFIIVILAVVFFISGVLQLLIRFVIR 66 (360)
Q Consensus 29 ~sSS~~~isp~iliIIvIL~ivf~i~~ll~llvr~l~R 66 (360)
.|.+...++-.++-+|+++.+++|++++.+++++++.+
T Consensus 266 SSnss~S~s~~l~piil~IG~vl~i~~Ig~~ifK~~~~ 303 (305)
T PF04639_consen 266 SSNSSKSVSDSLLPIILIIGGVLLIVFIGYFIFKRLMN 303 (305)
T ss_pred ccCccchhhhhhhHHHHHHHHHHHHHHhhheeeEeecc
Confidence 44455555555565666666666665555555555443
No 138
>PF15179 Myc_target_1: Myc target protein 1
Probab=61.85 E-value=16 Score=33.76 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 038999 36 ISPAILFIIVILAVVFFISGVLQLLIRFVIRRRS 69 (360)
Q Consensus 36 isp~iliIIvIL~ivf~i~~ll~llvr~l~Rrr~ 69 (360)
+...|+-+.+-+++.++|-+++++|..|+.|||.
T Consensus 18 ~~~lIlaF~vSm~iGLviG~li~~LltwlSRRRA 51 (197)
T PF15179_consen 18 WEDLILAFCVSMAIGLVIGALIWALLTWLSRRRA 51 (197)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567777777788888888889999999998874
No 139
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=61.55 E-value=5.2 Score=25.16 Aligned_cols=23 Identities=30% Similarity=0.725 Sum_probs=13.9
Q ss_pred ccccccCccccCccccccCCCCCcc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAF 151 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~F 151 (360)
.|+-|..++.. ..+.-|.|||.|
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCC
Confidence 47777766543 234455677776
No 140
>PF15050 SCIMP: SCIMP protein
Probab=60.60 E-value=19 Score=31.02 Aligned_cols=7 Identities=29% Similarity=0.700 Sum_probs=3.0
Q ss_pred HHHHHHh
Q 038999 61 IRFVIRR 67 (360)
Q Consensus 61 vr~l~Rr 67 (360)
.|+++|+
T Consensus 31 cR~~lRq 37 (133)
T PF15050_consen 31 CRWQLRQ 37 (133)
T ss_pred HHHHHHc
Confidence 4444444
No 141
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=60.38 E-value=4.8 Score=28.34 Aligned_cols=43 Identities=26% Similarity=0.561 Sum_probs=29.3
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhc------CCCCCccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS------NSTCPLCR 170 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR 170 (360)
.|.||......++.+.-- .|+..||..|+..=... .-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~-~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCD-SCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBS-TTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcC-CCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 388999854444444444 59999999999765431 34588885
No 142
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=59.59 E-value=6.1 Score=39.35 Aligned_cols=50 Identities=20% Similarity=0.494 Sum_probs=33.8
Q ss_pred CCccccccCccc-------------cC--c-cccccCCCCCccchhhhhhhhhc---------CCCCCcccccccc
Q 038999 125 PFDCAVCLCEFS-------------EQ--D-KLRLLPMCSHAFHIDCIDTWLLS---------NSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~-------------~~--~-~~~~lp~C~H~FH~~CI~~Wl~~---------~~tCP~CR~~l~~ 175 (360)
..+|++|+..=. .+ . .-...| |||+--.+-..-|-+. +..||.|-..|..
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 468999998721 00 0 111345 9999999999999754 4469999776643
No 143
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.16 E-value=12 Score=38.61 Aligned_cols=37 Identities=24% Similarity=0.605 Sum_probs=29.9
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS 162 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~ 162 (360)
....+|-||.+.+.. .+..+. |+|.|+..|+...+.+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 344689999999876 455566 9999999999998865
No 144
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=55.92 E-value=7.1 Score=46.12 Aligned_cols=50 Identities=28% Similarity=0.493 Sum_probs=40.2
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCC----CCCcccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS----TCPLCRGNL 173 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~l 173 (360)
.....|.||+...+..+.+.... |.-.||..|+++-+..-. .||-||..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~-c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDE-CLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHh-hhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 34568999999988877776666 999999999999876533 599998755
No 145
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=55.77 E-value=8.8 Score=38.37 Aligned_cols=45 Identities=27% Similarity=0.487 Sum_probs=32.5
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCR 170 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 170 (360)
...|-.|..+.......+.-. |.|+||.+|=.--=..-..||-|.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~-Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCES-CKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchh-ccceeeccchHHHHhhhhcCCCcC
Confidence 346999987777665555554 999999999544333446799995
No 146
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=55.47 E-value=17 Score=37.74 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038999 20 LPYNSDYQKESSSGNKISPAILFIIVILAVVFFISGVLQLLIRFVIRRR 68 (360)
Q Consensus 20 ~~~~~~~~~~sSS~~~isp~iliIIvIL~ivf~i~~ll~llvr~l~Rrr 68 (360)
.|||..++.-=++...+.|+-+++..+++++...+.++.++....+|.+
T Consensus 539 iP~p~n~P~hW~a~LyvTPS~lIl~s~~al~gvC~~il~ii~~Lh~~EK 587 (606)
T KOG4550|consen 539 IPYPHNVPRHWSAKLYVTPSNLILLSAIALIGVCVFILAIIGILHWQEK 587 (606)
T ss_pred eCCCCCCCccceeeEEEChHHHHHHHHHHHHHHHHHHHHHHhheehhhh
Confidence 4555555555678888899877776666665555555544444444433
No 147
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=55.44 E-value=15 Score=36.02 Aligned_cols=9 Identities=44% Similarity=0.729 Sum_probs=3.9
Q ss_pred HHHHHHHhc
Q 038999 60 LIRFVIRRR 68 (360)
Q Consensus 60 lvr~l~Rrr 68 (360)
|..|+.|||
T Consensus 278 LYiWlyrrR 286 (295)
T TIGR01478 278 LYIWLYRRR 286 (295)
T ss_pred HHHHHHHhh
Confidence 334444444
No 148
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=55.29 E-value=6.7 Score=39.02 Aligned_cols=44 Identities=20% Similarity=0.481 Sum_probs=34.0
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcC---CCCCcc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN---STCPLC 169 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~---~tCP~C 169 (360)
-+.||+-.+.-........|. |||+.-.+-++.--+.. .-||.|
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 378999888777767777787 99999999998854332 249999
No 149
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.92 E-value=5.7 Score=40.52 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=32.2
Q ss_pred CCccccccCccccCcccc--ccCCCCCccchhhhhhhhhcCCCCCcc
Q 038999 125 PFDCAVCLCEFSEQDKLR--LLPMCSHAFHIDCIDTWLLSNSTCPLC 169 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~--~lp~C~H~FH~~CI~~Wl~~~~tCP~C 169 (360)
-.+|+.|.-.+....... ... |+|-||..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 357998887765444332 334 89999999999998888877555
No 150
>PTZ00370 STEVOR; Provisional
Probab=53.32 E-value=17 Score=35.84 Aligned_cols=9 Identities=44% Similarity=0.729 Sum_probs=3.9
Q ss_pred HHHHHHHhc
Q 038999 60 LIRFVIRRR 68 (360)
Q Consensus 60 lvr~l~Rrr 68 (360)
|..|+.|||
T Consensus 274 lYiwlyrrR 282 (296)
T PTZ00370 274 LYIWLYRRR 282 (296)
T ss_pred HHHHHHHhh
Confidence 344444444
No 151
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=53.30 E-value=14 Score=26.95 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 42 FIIVILAVVFFISGVLQLLIRFVIR 66 (360)
Q Consensus 42 iIIvIL~ivf~i~~ll~llvr~l~R 66 (360)
+.-+|++.++|++++++++-+-+..
T Consensus 16 igGLi~A~vlfi~Gi~iils~kckC 40 (50)
T PF02038_consen 16 IGGLIFAGVLFILGILIILSGKCKC 40 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred ccchHHHHHHHHHHHHHHHcCcccc
Confidence 3445667777777777777655543
No 152
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=53.21 E-value=12 Score=37.76 Aligned_cols=8 Identities=25% Similarity=0.982 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 038999 56 VLQLLIRF 63 (360)
Q Consensus 56 ll~llvr~ 63 (360)
+++|+.||
T Consensus 328 IIYLILRY 335 (353)
T TIGR01477 328 IIYLILRY 335 (353)
T ss_pred HHHHHHHh
Confidence 33444433
No 153
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=52.45 E-value=6.4 Score=29.61 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=19.5
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhh
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWL 160 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl 160 (360)
+...|.+|...|..-..-.--..||++|+..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3468999999997644333334699999999987665
No 154
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=52.33 E-value=9.8 Score=27.17 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=27.5
Q ss_pred cccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 128 CAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 128 C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
|+.|.+.+...+.+.. . -+..||..| .+|-.|+.+|...
T Consensus 1 C~~C~~~I~~~~~~~~-~-~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIK-A-MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEE-E-TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEE-e-CCcEEEccc--------cccCCCCCccCCC
Confidence 7778888776554422 2 678899888 6788898877544
No 155
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.26 E-value=15 Score=29.82 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=25.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 29 ESSSGNKISPAILFIIVILAVVFFISGVLQLLIRFVIR 66 (360)
Q Consensus 29 ~sSS~~~isp~iliIIvIL~ivf~i~~ll~llvr~l~R 66 (360)
+++.+.++.|.+++++.+.+|.+ +..||++-+++..
T Consensus 51 Dda~GlKV~PvvVLvmSvgFIas--V~~LHi~gK~~~~ 86 (88)
T KOG3457|consen 51 DDAPGLKVDPVVVLVMSVGFIAS--VFALHIWGKLTRS 86 (88)
T ss_pred cCCCCceeCCeeehhhhHHHHHH--HHHHHHHHHHhhc
Confidence 66788999999887777665544 3357888777643
No 156
>PTZ00046 rifin; Provisional
Probab=52.21 E-value=15 Score=37.21 Aligned_cols=9 Identities=22% Similarity=0.752 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 038999 55 GVLQLLIRF 63 (360)
Q Consensus 55 ~ll~llvr~ 63 (360)
++++|+.||
T Consensus 332 vIIYLILRY 340 (358)
T PTZ00046 332 VIIYLILRY 340 (358)
T ss_pred HHHHHHHHh
Confidence 333443433
No 157
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=51.98 E-value=4.8 Score=41.13 Aligned_cols=49 Identities=20% Similarity=0.474 Sum_probs=0.0
Q ss_pred CCccccccCccc-------------cCc---cccccCCCCCccchhhhhhhhhc---------CCCCCccccccc
Q 038999 125 PFDCAVCLCEFS-------------EQD---KLRLLPMCSHAFHIDCIDTWLLS---------NSTCPLCRGNLY 174 (360)
Q Consensus 125 ~~~C~ICle~f~-------------~~~---~~~~lp~C~H~FH~~CI~~Wl~~---------~~tCP~CR~~l~ 174 (360)
..+|++|+..-. .+. .....| |||+--.+...-|-.. +..||.|-.+|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 578999998721 111 122356 9999999999999753 346999987775
No 158
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=51.76 E-value=16 Score=36.42 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=36.3
Q ss_pred CccccccCccccCcccc-ccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 126 FDCAVCLCEFSEQDKLR-LLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~-~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
..|+||.+.....+..- -.| |+|..|..|+..-...+.+||.||.+....
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCccccC
Confidence 68999999874433222 233 788888888888778889999999655443
No 159
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=51.74 E-value=60 Score=30.66 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=17.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 36 ISPAILFIIVILAVVFFISGVLQLLIR 62 (360)
Q Consensus 36 isp~iliIIvIL~ivf~i~~ll~llvr 62 (360)
--.+|++-++|++++|+|+.+|+|-..
T Consensus 126 ~K~amLIClIIIAVLfLICT~LfLSTV 152 (227)
T PF05399_consen 126 NKMAMLICLIIIAVLFLICTLLFLSTV 152 (227)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777777777777766665433
No 160
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.50 E-value=8.3 Score=37.20 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=29.7
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhhc
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS 162 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~ 162 (360)
.++...|+.||..+.. ..+.+ =||+|+.+||...+..
T Consensus 40 iK~FdcCsLtLqPc~d---Pvit~-~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRD---PVITP-DGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccC---CccCC-CCeeeeHHHHHHHHHH
Confidence 3455689999999887 55666 7999999999988754
No 161
>PRK09458 pspB phage shock protein B; Provisional
Probab=51.47 E-value=46 Score=26.35 Aligned_cols=21 Identities=14% Similarity=0.070 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038999 44 IVILAVVFFISGVLQLLIRFV 64 (360)
Q Consensus 44 IvIL~ivf~i~~ll~llvr~l 64 (360)
+++-+++|++++..++++-.|
T Consensus 6 l~~PliiF~ifVaPiWL~LHY 26 (75)
T PRK09458 6 LAIPLTIFVLFVAPIWLWLHY 26 (75)
T ss_pred HHHhHHHHHHHHHHHHHHHhh
Confidence 333333444444434444333
No 162
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=51.07 E-value=11 Score=27.11 Aligned_cols=43 Identities=26% Similarity=0.593 Sum_probs=19.0
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcC-----CCCCccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN-----STCPLCRGN 172 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-----~tCP~CR~~ 172 (360)
..|+|....+.. .+|-.. |.|+-+.+ ++.||..+ -.||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 368888887765 344444 88874322 34555432 249999763
No 163
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=50.11 E-value=18 Score=25.41 Aligned_cols=13 Identities=23% Similarity=0.463 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhc
Q 038999 56 VLQLLIRFVIRRR 68 (360)
Q Consensus 56 ll~llvr~l~Rrr 68 (360)
.++++.+|..|+|
T Consensus 26 a~~iYRKw~aRkr 38 (43)
T PF08114_consen 26 ALFIYRKWQARKR 38 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555554
No 164
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=50.05 E-value=22 Score=29.87 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038999 43 IIVILAVVFFISGVLQLLIRFVIRR 67 (360)
Q Consensus 43 IIvIL~ivf~i~~ll~llvr~l~Rr 67 (360)
++.|++++|++++++.++.....|+
T Consensus 3 Ll~il~llLll~l~asl~~wr~~~r 27 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRMKQR 27 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444333333
No 165
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=49.93 E-value=31 Score=28.27 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=21.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 28 KESSSGNKISPAILFIIVILAVVFFISGVLQLLIR 62 (360)
Q Consensus 28 ~~sSS~~~isp~iliIIvIL~ivf~i~~ll~llvr 62 (360)
..++|+..++....++|++++.+.++.++..++.|
T Consensus 26 ~p~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 26 APSSSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred CCCCCCCcceeEeeeeehHHHHHHHHHHHHHHHHH
Confidence 45577777887766666666655555554444444
No 166
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=49.59 E-value=27 Score=28.50 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhc
Q 038999 56 VLQLLIRFVIRRR 68 (360)
Q Consensus 56 ll~llvr~l~Rrr 68 (360)
++.+++.|+.|+|
T Consensus 48 VilwfvCC~kRkr 60 (94)
T PF05393_consen 48 VILWFVCCKKRKR 60 (94)
T ss_pred HHHHHHHHHHhhh
Confidence 3444444444444
No 167
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=48.91 E-value=26 Score=29.25 Aligned_cols=31 Identities=10% Similarity=0.206 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038999 38 PAILFIIVILAVVFFISGVLQLLIRFVIRRR 68 (360)
Q Consensus 38 p~iliIIvIL~ivf~i~~ll~llvr~l~Rrr 68 (360)
.+|-+++.|+++++++++|+.+.++|-..++
T Consensus 15 ~sW~~LVGVv~~al~~SlLIalaaKC~~~~k 45 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVTSLLIALAAKCPVWYK 45 (102)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3566667777777777777778888776665
No 169
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=47.92 E-value=8.7 Score=25.92 Aligned_cols=25 Identities=36% Similarity=0.881 Sum_probs=15.9
Q ss_pred ccccccCccccCcc--------ccccCCCCCccc
Q 038999 127 DCAVCLCEFSEQDK--------LRLLPMCSHAFH 152 (360)
Q Consensus 127 ~C~ICle~f~~~~~--------~~~lp~C~H~FH 152 (360)
.|+-|...|..++. ++ .+.|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vr-C~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVR-CPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEE-CCCCCcEee
Confidence 68888888875542 22 234777775
No 170
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=47.69 E-value=25 Score=34.85 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 038999 44 IVILAVVFFISGVLQLLIRFVIRRRS 69 (360)
Q Consensus 44 IvIL~ivf~i~~ll~llvr~l~Rrr~ 69 (360)
|+..+++++|++++.+++.+++|.||
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666677777777775
No 171
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=45.75 E-value=16 Score=26.23 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=26.0
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhh
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL 161 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~ 161 (360)
..|.+|-..|..-..-.....||++|+..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 479999988876543333446999999999876543
No 172
>PLN02189 cellulose synthase
Probab=45.71 E-value=24 Score=40.44 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=35.0
Q ss_pred CccccccCcccc---CccccccCCCCCccchhhhhhhhh-cCCCCCccccccccCC
Q 038999 126 FDCAVCLCEFSE---QDKLRLLPMCSHAFHIDCIDTWLL-SNSTCPLCRGNLYIHG 177 (360)
Q Consensus 126 ~~C~ICle~f~~---~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~ 177 (360)
..|.||-++... ++.-.....|+--.|..|.+-=.+ .+++||.|+...-.+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 489999999752 233333334777799999854332 3578999998887554
No 173
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=45.58 E-value=89 Score=28.29 Aligned_cols=22 Identities=18% Similarity=0.171 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038999 44 IVILAVVFFISGVLQLLIRFVI 65 (360)
Q Consensus 44 IvIL~ivf~i~~ll~llvr~l~ 65 (360)
.++++++|..++++++++|.+.
T Consensus 97 ~~~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 97 ALYVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555566666553
No 174
>PHA03281 envelope glycoprotein E; Provisional
Probab=44.92 E-value=43 Score=35.79 Aligned_cols=17 Identities=24% Similarity=0.096 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038999 39 AILFIIVILAVVFFISG 55 (360)
Q Consensus 39 ~iliIIvIL~ivf~i~~ 55 (360)
+++--+.++++++++++
T Consensus 558 ~l~~~~a~~~ll~l~~~ 574 (642)
T PHA03281 558 AITGGFAALALLCLAIA 574 (642)
T ss_pred hhhhhhHHHHHHHHHHH
Confidence 33333333443333333
No 175
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=44.72 E-value=32 Score=27.78 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=9.9
Q ss_pred CCCCCChHHHHHHHHHH
Q 038999 32 SGNKISPAILFIIVILA 48 (360)
Q Consensus 32 S~~~isp~iliIIvIL~ 48 (360)
.-..++|..+..|+|++
T Consensus 18 ~~~~l~pn~lMtILivL 34 (85)
T PF10717_consen 18 NLNGLNPNTLMTILIVL 34 (85)
T ss_pred cccccChhHHHHHHHHH
Confidence 34567777765554433
No 176
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=43.56 E-value=5 Score=31.30 Aligned_cols=41 Identities=24% Similarity=0.428 Sum_probs=23.2
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..|+.|..++... =+|.+|..|-.. +.....||-|..+|..
T Consensus 2 ~~CP~C~~~L~~~--------~~~~~C~~C~~~-~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--------GGHYHCEACQKD-YKKEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEE--------TTEEEETTT--E-EEEEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEe--------CCEEECcccccc-ceecccCCCcccHHHH
Confidence 3699998886542 267777778766 4566789999887743
No 177
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=42.81 E-value=12 Score=25.19 Aligned_cols=25 Identities=28% Similarity=0.793 Sum_probs=16.3
Q ss_pred ccccccCccccCcc--------ccccCCCCCccc
Q 038999 127 DCAVCLCEFSEQDK--------LRLLPMCSHAFH 152 (360)
Q Consensus 127 ~C~ICle~f~~~~~--------~~~lp~C~H~FH 152 (360)
+|+=|...|..++. ++. ++|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C-~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRC-SKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEEC-CCCCCEeC
Confidence 68888888876653 222 34777774
No 178
>PLN02436 cellulose synthase A
Probab=41.92 E-value=30 Score=39.81 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=34.7
Q ss_pred CccccccCccc---cCccccccCCCCCccchhhhhhhhh-cCCCCCccccccccCC
Q 038999 126 FDCAVCLCEFS---EQDKLRLLPMCSHAFHIDCIDTWLL-SNSTCPLCRGNLYIHG 177 (360)
Q Consensus 126 ~~C~ICle~f~---~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~ 177 (360)
..|.||-++.. +++.-.-...|+--.|..|.+-=.+ .+++||.|+...-.+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 48999999963 3333332333666699999854332 3567999998887544
No 179
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=40.94 E-value=58 Score=25.05 Aligned_cols=19 Identities=32% Similarity=0.551 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038999 44 IVILAVVFFISGVLQLLIR 62 (360)
Q Consensus 44 IvIL~ivf~i~~ll~llvr 62 (360)
++-+.+||++++++.+++.
T Consensus 9 i~Gm~iVF~~L~lL~~~i~ 27 (79)
T PF04277_consen 9 IIGMGIVFLVLILLILVIS 27 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444443333333333
No 180
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=40.66 E-value=33 Score=32.73 Aligned_cols=8 Identities=25% Similarity=0.081 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 038999 58 QLLIRFVI 65 (360)
Q Consensus 58 ~llvr~l~ 65 (360)
.-|+|+++
T Consensus 208 vgLyr~C~ 215 (259)
T PF07010_consen 208 VGLYRMCW 215 (259)
T ss_pred HHHHHHhh
Confidence 33344443
No 181
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=40.38 E-value=35 Score=27.38 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038999 41 LFIIVILAVVFFISGVLQLL 60 (360)
Q Consensus 41 liIIvIL~ivf~i~~ll~ll 60 (360)
++.|+++++++++.+++..+
T Consensus 6 i~~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTI 25 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444434333
No 182
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.02 E-value=68 Score=23.76 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038999 38 PAILFIIVILAVVFFISGVLQLLIRFVIRR 67 (360)
Q Consensus 38 p~iliIIvIL~ivf~i~~ll~llvr~l~Rr 67 (360)
|..+++++.+++.+++..++.+...+..|+
T Consensus 19 pl~l~il~~f~~G~llg~l~~~~~~~~~r~ 48 (68)
T PF06305_consen 19 PLGLLILIAFLLGALLGWLLSLPSRLRLRR 48 (68)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444444444433333
No 183
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=38.71 E-value=7 Score=38.00 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=21.5
Q ss_pred CCccccccCccccCccccccC--CCCCccchhhhhhhhhcCCCCCcc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLP--MCSHAFHIDCIDTWLLSNSTCPLC 169 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp--~C~H~FH~~CI~~Wl~~~~tCP~C 169 (360)
...|+||-..-.... ++.-. .-.|.+|.-|-..|-.....||.|
T Consensus 172 ~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~C 217 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYC 217 (290)
T ss_dssp -SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT
T ss_pred CCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCC
Confidence 468999987732211 11110 135788999999999889999999
No 184
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=38.65 E-value=35 Score=25.59 Aligned_cols=44 Identities=34% Similarity=0.801 Sum_probs=32.9
Q ss_pred ccccccCccccCc-cccccCCCC--CccchhhhhhhhhcCCCCCcccccccc
Q 038999 127 DCAVCLCEFSEQD-KLRLLPMCS--HAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 127 ~C~ICle~f~~~~-~~~~lp~C~--H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
.|-.|-.++..+. ..++ |. ..||.+|.+.-| +..||.|-..|..
T Consensus 7 nCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 5778888887765 3443 65 579999999966 6889999766654
No 185
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=38.42 E-value=10 Score=37.29 Aligned_cols=8 Identities=50% Similarity=1.061 Sum_probs=0.0
Q ss_pred HHHhc-CCc
Q 038999 106 AFIDA-LPV 113 (360)
Q Consensus 106 ~~i~~-Lp~ 113 (360)
.++.+ +|+
T Consensus 185 ~f~~KGiPv 193 (290)
T PF05454_consen 185 TFISKGIPV 193 (290)
T ss_dssp ---------
T ss_pred HHHhcCCce
Confidence 34443 553
No 186
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=38.06 E-value=19 Score=34.88 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=30.3
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCC--CCcc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNST--CPLC 169 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~t--CP~C 169 (360)
..|+|-+..+.. ..+..+|||+|-.+=|...+....+ ||+=
T Consensus 177 ~rdPis~~~I~n---PviSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 177 NRDPISKKPIVN---PVISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred ccCchhhhhhhc---hhhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 568888777665 4445579999999999998876443 7763
No 187
>PHA02975 hypothetical protein; Provisional
Probab=37.56 E-value=86 Score=24.41 Aligned_cols=6 Identities=50% Similarity=0.938 Sum_probs=2.2
Q ss_pred HHHHHH
Q 038999 40 ILFIIV 45 (360)
Q Consensus 40 iliIIv 45 (360)
+++||+
T Consensus 45 ~~~ii~ 50 (69)
T PHA02975 45 IILIIF 50 (69)
T ss_pred HHHHHH
Confidence 333333
No 188
>PF15050 SCIMP: SCIMP protein
Probab=37.40 E-value=85 Score=27.17 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 038999 50 VFFISGVLQLLIRFVIRRRSS 70 (360)
Q Consensus 50 vf~i~~ll~llvr~l~Rrr~~ 70 (360)
++++...+-++..|.+|+..+
T Consensus 16 II~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 16 IILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666666543
No 189
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=37.37 E-value=68 Score=30.70 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 038999 47 LAVVFFISGVLQLLIRFVIRRRS 69 (360)
Q Consensus 47 L~ivf~i~~ll~llvr~l~Rrr~ 69 (360)
++++++|.+++++++.+|+-.+.
T Consensus 194 vIaliVitl~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 194 VIALIVITLSVFTLVGLYRMCWK 216 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344445556666666655554
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=37.03 E-value=21 Score=39.40 Aligned_cols=45 Identities=29% Similarity=0.629 Sum_probs=29.4
Q ss_pred CCccccccCcccc----Cc-----cccccCCCCCccchhhhhhhhhcCCCCCcccccc
Q 038999 125 PFDCAVCLCEFSE----QD-----KLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNL 173 (360)
Q Consensus 125 ~~~C~ICle~f~~----~~-----~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 173 (360)
...|+-|...|-. +. ..-+.|.|.|.-|.+=|.. +.+||+|+..+
T Consensus 1131 ~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1131 DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred CCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 4568878777642 11 1223456999998887654 58899997644
No 191
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=36.96 E-value=8.6 Score=27.83 Aligned_cols=39 Identities=31% Similarity=0.606 Sum_probs=21.3
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGN 172 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 172 (360)
.+.|+.|-+.|... .| +.|+.-...-+ .+...||+|...
T Consensus 2 ~f~CP~C~~~~~~~----~L--~~H~~~~H~~~---~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSES----SL--VEHCEDEHRSE---SKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHH----HH--HHHHHhHCcCC---CCCccCCCchhh
Confidence 46899999965542 22 33432222211 123569999753
No 192
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=36.67 E-value=29 Score=32.49 Aligned_cols=12 Identities=25% Similarity=-0.042 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhc
Q 038999 57 LQLLIRFVIRRR 68 (360)
Q Consensus 57 l~llvr~l~Rrr 68 (360)
+.+.++++..||
T Consensus 117 ~~~~~Y~~~~Rr 128 (202)
T PF06365_consen 117 LLGAGYCCHQRR 128 (202)
T ss_pred HHHHHHHhhhhc
Confidence 333444444444
No 193
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=36.52 E-value=23 Score=34.67 Aligned_cols=9 Identities=33% Similarity=0.552 Sum_probs=3.4
Q ss_pred HHHHHHHhc
Q 038999 60 LIRFVIRRR 68 (360)
Q Consensus 60 lvr~l~Rrr 68 (360)
+.+++.|||
T Consensus 290 iaYli~Rrr 298 (306)
T PF01299_consen 290 IAYLIGRRR 298 (306)
T ss_pred HhheeEecc
Confidence 333333433
No 194
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=36.38 E-value=52 Score=29.43 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=17.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038999 34 NKISPAILFIIVILAVVFFISGVLQLLIRFVIRRR 68 (360)
Q Consensus 34 ~~isp~iliIIvIL~ivf~i~~ll~llvr~l~Rrr 68 (360)
+.++.-+++|++.+++.++++++++.++-...|++
T Consensus 25 sffsthm~tILiaIvVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 25 SFFSTHMYTILIAIVVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34555555555555555555555554444445555
No 195
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=36.38 E-value=27 Score=28.59 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=22.3
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhh
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTW 159 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~W 159 (360)
...|.||....-.--..... .|...||..|....
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~-~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHP-GCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCCCceeEEcCCC-CCCcCCCHHHHHHC
Confidence 46899999883221122222 38889999998663
No 196
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=35.93 E-value=85 Score=22.11 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 038999 46 ILAVVFFISGVLQLLIRFVIRRR 68 (360)
Q Consensus 46 IL~ivf~i~~ll~llvr~l~Rrr 68 (360)
.++++++++++..++.+++.|+-
T Consensus 15 Sl~vI~~~igm~~~~~~~F~~k~ 37 (42)
T PF11346_consen 15 SLIVIVFTIGMGVFFIRYFIRKM 37 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666677776653
No 197
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=35.55 E-value=12 Score=38.24 Aligned_cols=43 Identities=30% Similarity=0.574 Sum_probs=0.0
Q ss_pred CccccccCccccC-----------ccccccCCCCCccchhhhhhhhh------cCCCCCccccc
Q 038999 126 FDCAVCLCEFSEQ-----------DKLRLLPMCSHAFHIDCIDTWLL------SNSTCPLCRGN 172 (360)
Q Consensus 126 ~~C~ICle~f~~~-----------~~~~~lp~C~H~FH~~CI~~Wl~------~~~tCP~CR~~ 172 (360)
.+|++=|..+... +.-..|. |||++-.+ .|-. ...+||+||..
T Consensus 278 pQCPVglnTL~fp~~~~~~~~~~~qP~VYl~-CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 278 PQCPVGLNTLVFPSKSRKDVPDERQPWVYLN-CGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCCCcCCCccccccccccccccccCceeecc-ccceeeec---ccccccccccccccCCCcccc
Confidence 4677776665422 1222354 99987643 5643 24579999863
No 198
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=34.46 E-value=52 Score=26.29 Aligned_cols=53 Identities=17% Similarity=0.329 Sum_probs=20.0
Q ss_pred CCccccccCcccc---CccccccCCCCCccchhhhhhhhh-cCCCCCccccccccCC
Q 038999 125 PFDCAVCLCEFSE---QDKLRLLPMCSHAFHIDCIDTWLL-SNSTCPLCRGNLYIHG 177 (360)
Q Consensus 125 ~~~C~ICle~f~~---~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~ 177 (360)
...|.||-++.-. ++.......|+--.|..|.+-=.+ .++.||-|+.......
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----T
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccccc
Confidence 3589999998643 232222224667788899875443 3678999998776543
No 199
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=34.26 E-value=28 Score=37.84 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 038999 44 IVILAVVFFISGVLQLLIRFVIRR 67 (360)
Q Consensus 44 IvIL~ivf~i~~ll~llvr~l~Rr 67 (360)
+.|++-+++++++++++...++|+
T Consensus 273 ~gVlvPv~vV~~Iiiil~~~LCRk 296 (684)
T PF12877_consen 273 AGVLVPVLVVLLIIIILYWKLCRK 296 (684)
T ss_pred ehHhHHHHHHHHHHHHHHHHHhcc
Confidence 333444444443333333344443
No 200
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=34.09 E-value=38 Score=27.80 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 038999 39 AILFIIVILAVVFFI 53 (360)
Q Consensus 39 ~iliIIvIL~ivf~i 53 (360)
.+|++.++|+++|||
T Consensus 5 ~~llL~l~LA~lLli 19 (95)
T PF07172_consen 5 AFLLLGLLLAALLLI 19 (95)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334333344443333
No 201
>PRK01844 hypothetical protein; Provisional
Probab=33.95 E-value=1.1e+02 Score=24.13 Aligned_cols=26 Identities=8% Similarity=0.183 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038999 42 FIIVILAVVFFISGVLQLLIRFVIRR 67 (360)
Q Consensus 42 iIIvIL~ivf~i~~ll~llvr~l~Rr 67 (360)
++++|++++.-+++-+++..+++.+.
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k~ 32 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMNY 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 202
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=33.72 E-value=21 Score=22.66 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=10.2
Q ss_pred ccccccCccccCccccccCCCCCccchhhh
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCI 156 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI 156 (360)
.|.+|.+....+-.-.-. .|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~-~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCS-ECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-T-TT-----HHHH
T ss_pred cCCcCCCcCCCCceEECc-cCCCccChhcC
Confidence 588888886653333344 49999999885
No 203
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=33.59 E-value=49 Score=33.50 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 038999 48 AVVFFISGVLQLLIRFVIRRRSS 70 (360)
Q Consensus 48 ~ivf~i~~ll~llvr~l~Rrr~~ 70 (360)
++++++++++.+++++++|.||.
T Consensus 316 iIAIvvIVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 316 IIAILIIVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 33444455567778888888864
No 204
>PTZ00046 rifin; Provisional
Probab=33.40 E-value=50 Score=33.54 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 038999 47 LAVVFFISGVLQLLIRFVIRRRSS 70 (360)
Q Consensus 47 L~ivf~i~~ll~llvr~l~Rrr~~ 70 (360)
.++++++++|+.+++++++|.||.
T Consensus 320 SiiAIvVIVLIMvIIYLILRYRRK 343 (358)
T PTZ00046 320 SIVAIVVIVLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333444555677778888888864
No 205
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=32.98 E-value=4.9 Score=33.06 Aligned_cols=6 Identities=17% Similarity=0.302 Sum_probs=2.6
Q ss_pred CCCChH
Q 038999 34 NKISPA 39 (360)
Q Consensus 34 ~~isp~ 39 (360)
+.+++.
T Consensus 61 ~~ls~g 66 (96)
T PTZ00382 61 SGLSTG 66 (96)
T ss_pred CCcccc
Confidence 344443
No 206
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=32.94 E-value=81 Score=29.09 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=11.9
Q ss_pred ccchhhhhhhh--hcCCCCCc
Q 038999 150 AFHIDCIDTWL--LSNSTCPL 168 (360)
Q Consensus 150 ~FH~~CI~~Wl--~~~~tCP~ 168 (360)
..+.+-+..|| .++..||+
T Consensus 123 r~~G~~~R~~L~~Lr~~~~p~ 143 (186)
T PF07406_consen 123 RLPGENFRSYLLDLRNSSTPL 143 (186)
T ss_pred ccccccHHHHHHHHHhccCCc
Confidence 34566788888 45555554
No 207
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=32.52 E-value=47 Score=24.25 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 038999 51 FFISGVLQLLIRFVIRR 67 (360)
Q Consensus 51 f~i~~ll~llvr~l~Rr 67 (360)
|++++++.+++....|.
T Consensus 10 ~iv~~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 10 FIVMGLLGLSICTTLKA 26 (50)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 33333333344344433
No 208
>PHA02849 putative transmembrane protein; Provisional
Probab=31.67 E-value=1.3e+02 Score=24.06 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=10.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 36 ISPAILFIIVILAVVFFISGVLQLLIRF 63 (360)
Q Consensus 36 isp~iliIIvIL~ivf~i~~ll~llvr~ 63 (360)
+...+++.+.++.+++++.+ ++.+++|
T Consensus 14 ~g~v~vi~v~v~vI~i~~fl-LlyLvkw 40 (82)
T PHA02849 14 AGAVTVILVFVLVISFLAFM-LLYLIKW 40 (82)
T ss_pred cchHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33344444444444443333 3333443
No 209
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.14 E-value=1.2e+02 Score=23.76 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038999 41 LFIIVILAVVFFISGVLQLLIRFVIRR 67 (360)
Q Consensus 41 liIIvIL~ivf~i~~ll~llvr~l~Rr 67 (360)
.++++++++++.+++-+++..+...+.
T Consensus 6 ail~ivl~ll~G~~~G~fiark~~~k~ 32 (71)
T COG3763 6 AILLIVLALLAGLIGGFFIARKQMKKQ 32 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445554444
No 210
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.64 E-value=20 Score=35.51 Aligned_cols=47 Identities=23% Similarity=0.605 Sum_probs=37.8
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNL 173 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 173 (360)
....|-||...+...... ..|.|-|+..|...|......||.|+...
T Consensus 104 ~~~~~~~~~g~l~vpt~~---qg~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRI---QGCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred CccceeeeeeeEEecccc---cCceeeeeecCCchhhhhhhccchhhcCc
Confidence 456799998887764332 25999999999999999999999998754
No 211
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=30.44 E-value=1.1e+02 Score=26.09 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=12.3
Q ss_pred hcCCCCCccccccccC
Q 038999 161 LSNSTCPLCRGNLYIH 176 (360)
Q Consensus 161 ~~~~tCP~CR~~l~~~ 176 (360)
.+...|+.|++++..+
T Consensus 83 Gr~D~CM~C~~pLTLd 98 (114)
T PF11023_consen 83 GRVDACMHCKEPLTLD 98 (114)
T ss_pred chhhccCcCCCcCccC
Confidence 3456799999998765
No 212
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=29.83 E-value=1.6e+02 Score=22.16 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=4.8
Q ss_pred HHHHHHHHHh
Q 038999 58 QLLIRFVIRR 67 (360)
Q Consensus 58 ~llvr~l~Rr 67 (360)
.+++|++...
T Consensus 24 tl~IRri~~~ 33 (58)
T PF13314_consen 24 TLFIRRILIN 33 (58)
T ss_pred HHHHHHHHHh
Confidence 3445555443
No 213
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.75 E-value=27 Score=34.39 Aligned_cols=41 Identities=17% Similarity=0.401 Sum_probs=29.6
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN 163 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~ 163 (360)
.....|.+|.|.+++.--+.+-..=.|.||.-|-..-++.+
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 34578999999988754443222236999999999988764
No 214
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=29.64 E-value=35 Score=34.13 Aligned_cols=44 Identities=7% Similarity=-0.090 Sum_probs=32.3
Q ss_pred CCCCccccccCccccCccccccCCCCCc-cchhhhhhhhhcCCCCCccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHA-FHIDCIDTWLLSNSTCPLCRGN 172 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~ 172 (360)
-...+|..|-+.... ..+.+ |+|. |+..|.. +....+||.|...
T Consensus 341 ~s~~~~~~~~~~~~s---t~~~~-~~~n~~~~~~a~--~s~~~~~~~c~~~ 385 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLLS---TIWSG-GNMNLSPGSLAS--ASASPTSSTCDHN 385 (394)
T ss_pred hhhcccccccCceee---eEeec-CCcccChhhhhh--cccCCcccccccc
Confidence 345678888776544 45666 9985 9999988 5667899999653
No 215
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=29.37 E-value=25 Score=25.41 Aligned_cols=19 Identities=26% Similarity=0.689 Sum_probs=14.7
Q ss_pred ccccCCCCCccchhhhhhh
Q 038999 141 LRLLPMCSHAFHIDCIDTW 159 (360)
Q Consensus 141 ~~~lp~C~H~FH~~CI~~W 159 (360)
....+.|+|.|+..|...|
T Consensus 40 ~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 40 RVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eeECCCCCCeECCCCCCcC
Confidence 3344358999999999988
No 216
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=29.22 E-value=1.9e+02 Score=21.03 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 038999 49 VVFFISGVLQLLIRFVIRRR 68 (360)
Q Consensus 49 ivf~i~~ll~llvr~l~Rrr 68 (360)
+++++.+.++-+-|++..-|
T Consensus 11 i~lv~~gy~~hmkrycrafr 30 (54)
T PF13260_consen 11 IVLVVVGYFCHMKRYCRAFR 30 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445555555566665444
No 217
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=29.03 E-value=17 Score=35.90 Aligned_cols=40 Identities=20% Similarity=0.596 Sum_probs=32.1
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..|+-|.+-+-+.+.+|.. -.|+||.+|. .|-+|...|..
T Consensus 93 TKCsaC~~GIpPtqVVRkA--qd~VYHl~CF--------~C~iC~R~L~T 132 (383)
T KOG4577|consen 93 TKCSACQEGIPPTQVVRKA--QDFVYHLHCF--------ACFICKRQLAT 132 (383)
T ss_pred CcchhhcCCCChHHHHHHh--hcceeehhhh--------hhHhhhccccc
Confidence 5699999999888888765 5899999994 47788777654
No 218
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=28.82 E-value=12 Score=31.82 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCC
Q 038999 55 GVLQLLIRFVIRRRSS 70 (360)
Q Consensus 55 ~ll~llvr~l~Rrr~~ 70 (360)
+++.++-.|++|||+.
T Consensus 37 giLLliGCWYckRRSG 52 (118)
T PF14991_consen 37 GILLLIGCWYCKRRSG 52 (118)
T ss_dssp ----------------
T ss_pred HHHHHHhheeeeecch
Confidence 3444556677777643
No 219
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=28.62 E-value=35 Score=22.26 Aligned_cols=19 Identities=21% Similarity=0.674 Sum_probs=11.7
Q ss_pred CCCccchhhhhhhhhcCCCCCcccc
Q 038999 147 CSHAFHIDCIDTWLLSNSTCPLCRG 171 (360)
Q Consensus 147 C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (360)
|||++-..- ....||+|.+
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCEECCCc------CCCcCcCCCC
Confidence 666655433 3347999954
No 220
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=28.54 E-value=14 Score=36.27 Aligned_cols=36 Identities=22% Similarity=0.480 Sum_probs=26.8
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS 162 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~ 162 (360)
..|.+|+++|..+....... |.-+||..|+-.|+..
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTT 250 (288)
T ss_pred eecHHHHHHHhcccccchhh-cccccccccccccccc
Confidence 37999999987655555554 6668888888888754
No 221
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=28.07 E-value=85 Score=25.83 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 40 ILFIIVILAVVFFISGVLQLLIRFV 64 (360)
Q Consensus 40 iliIIvIL~ivf~i~~ll~llvr~l 64 (360)
+.+.+++++++++++.++..+++.+
T Consensus 16 l~~~~~~l~~~~~~l~ll~~ll~~~ 40 (108)
T PF07219_consen 16 LWVALILLLLLFVVLYLLLRLLRRL 40 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344443443333333334333
No 222
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=27.47 E-value=49 Score=26.87 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=29.5
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..|.-|...+.--|. .| |-.|+..+..|..|++++..
T Consensus 34 S~C~~C~~~L~~~~l---IP----------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDL---IP----------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CcCcCCCCcCccccc---ch----------HHHHHHhCCCCcccCCCCCh
Confidence 479999888776443 45 77899999999999988754
No 223
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=27.45 E-value=79 Score=28.54 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038999 43 IIVILAVVFFISGVLQLLIRFVIRR 67 (360)
Q Consensus 43 IIvIL~ivf~i~~ll~llvr~l~Rr 67 (360)
+++|++++++++.++...++.++++
T Consensus 6 l~~iv~il~lvl~~l~~~Ir~lq~~ 30 (175)
T COG4741 6 LILIVFILALVLYLLRAYIRSLQGK 30 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 224
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=27.29 E-value=34 Score=32.88 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=30.0
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCC--CC
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNST--CP 167 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~t--CP 167 (360)
..|+|-+..+.- ..+..+|+|.|-.+-|...|+...| ||
T Consensus 190 nrCpitl~p~~~---pils~kcnh~~e~D~I~~~lq~~~trvcp 230 (275)
T COG5627 190 NRCPITLNPDFY---PILSSKCNHKPEMDLINKKLQVECTRVCP 230 (275)
T ss_pred ccCCcccCcchh---HHHHhhhcccccHHHHHHHhcCCceeecc
Confidence 579998887543 4555579999999999999886555 55
No 225
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=27.19 E-value=1.1e+02 Score=28.93 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=16.5
Q ss_pred CCCccchhhhhhhhhc---CCCCCcccccc
Q 038999 147 CSHAFHIDCIDTWLLS---NSTCPLCRGNL 173 (360)
Q Consensus 147 C~H~FH~~CI~~Wl~~---~~tCP~CR~~l 173 (360)
|.|.||..-+...-.. ...||.|..-.
T Consensus 195 C~~C~hhngl~~~~ek~~~efiC~~Cn~~n 224 (251)
T COG5415 195 CPQCHHHNGLYRLAEKPIIEFICPHCNHKN 224 (251)
T ss_pred cccccccccccccccccchheecccchhhc
Confidence 7777776655443222 34699997643
No 226
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=27.10 E-value=72 Score=34.88 Aligned_cols=9 Identities=44% Similarity=0.379 Sum_probs=5.3
Q ss_pred eEEEeccCC
Q 038999 273 LQVALCPRR 281 (360)
Q Consensus 273 l~v~~~~~~ 281 (360)
|.||++.-+
T Consensus 563 lkVAVK~Lr 571 (807)
T KOG1094|consen 563 LKVAVKILR 571 (807)
T ss_pred eEEEEeecC
Confidence 667776433
No 227
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=27.05 E-value=28 Score=26.92 Aligned_cols=12 Identities=25% Similarity=0.913 Sum_probs=8.7
Q ss_pred ccchhhhhhhhh
Q 038999 150 AFHIDCIDTWLL 161 (360)
Q Consensus 150 ~FH~~CI~~Wl~ 161 (360)
-||..|+..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 228
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=26.82 E-value=55 Score=26.79 Aligned_cols=27 Identities=11% Similarity=0.232 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 40 ILFIIVILAVVFFISGVLQLLIRFVIR 66 (360)
Q Consensus 40 iliIIvIL~ivf~i~~ll~llvr~l~R 66 (360)
+--+..+++++|+.+++++|+..+++|
T Consensus 34 ws~vv~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 34 WSRVVEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred ceeEeeeeehHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555554
No 229
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=26.81 E-value=1e+02 Score=29.32 Aligned_cols=27 Identities=11% Similarity=0.437 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 038999 43 IIVILAVVFFISGVLQLLIRFVIRRRS 69 (360)
Q Consensus 43 IIvIL~ivf~i~~ll~llvr~l~Rrr~ 69 (360)
++-++..++||+++++++.+|+.||-+
T Consensus 68 l~qmi~aL~~VI~Liy~l~rwL~rR~~ 94 (219)
T PRK13415 68 FVKLIGATLFVIFLIYALVKWLNKRNR 94 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444555556666677777788887643
No 230
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=26.75 E-value=55 Score=28.62 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 038999 51 FFISGVLQLLIRFVIRRR 68 (360)
Q Consensus 51 f~i~~ll~llvr~l~Rrr 68 (360)
+++++.+.++.||++|++
T Consensus 113 i~is~~~~~~yr~~r~~~ 130 (139)
T PHA03099 113 IIITCCLLSVYRFTRRTK 130 (139)
T ss_pred HHHHHHHHhhheeeeccc
Confidence 334444444455544443
No 231
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=26.24 E-value=74 Score=36.78 Aligned_cols=52 Identities=17% Similarity=0.405 Sum_probs=33.5
Q ss_pred CccccccCccccC---ccccccCCCCCccchhhhhhhh-hcCCCCCccccccccCC
Q 038999 126 FDCAVCLCEFSEQ---DKLRLLPMCSHAFHIDCIDTWL-LSNSTCPLCRGNLYIHG 177 (360)
Q Consensus 126 ~~C~ICle~f~~~---~~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~~~ 177 (360)
..|.||-++.... +.-.....|+--.|..|.+-=. ..++.||-|+...-.+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 4899999986432 2222222356669999985322 23678999998876544
No 232
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=26.12 E-value=35 Score=34.52 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=17.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038999 32 SGNKISPAILFIIVILAVVFFISGVLQLLIRFVIRR 67 (360)
Q Consensus 32 S~~~isp~iliIIvIL~ivf~i~~ll~llvr~l~Rr 67 (360)
-...+|+.+|.|++|-+.+-++++++--++-++.|+
T Consensus 311 P~d~~S~lvi~i~~vgLG~P~l~li~Ggl~v~~~r~ 346 (350)
T PF15065_consen 311 PVDSFSPLVIMIMAVGLGVPLLLLILGGLYVCLRRR 346 (350)
T ss_pred CccchhHHHHHHHHHHhhHHHHHHHHhhheEEEecc
Confidence 345677777766666444444433333333333333
No 233
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.78 E-value=52 Score=25.36 Aligned_cols=26 Identities=19% Similarity=0.616 Sum_probs=13.2
Q ss_pred CCCChHHHHHHHHHHHH-HHHHHHHHH
Q 038999 34 NKISPAILFIIVILAVV-FFISGVLQL 59 (360)
Q Consensus 34 ~~isp~iliIIvIL~iv-f~i~~ll~l 59 (360)
..++|.+|++|+|..++ +|+++.+.+
T Consensus 8 KGlnPGlIVLlvV~g~ll~flvGnyvl 34 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVFLVGNYVL 34 (69)
T ss_pred cCCCCCeEEeehHHHHHHHHHHHHHHH
Confidence 56777766555554333 334443333
No 234
>PHA02657 hypothetical protein; Provisional
Probab=25.68 E-value=1.1e+02 Score=24.88 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=7.8
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 038999 36 ISPAILFIIVILAVVFFIS 54 (360)
Q Consensus 36 isp~iliIIvIL~ivf~i~ 54 (360)
+...+++.++++.+.|++.
T Consensus 24 ~~~imVitvfv~vI~il~f 42 (95)
T PHA02657 24 FESILVFTIFIFVVCILIY 42 (95)
T ss_pred chhhhHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 235
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.62 E-value=12 Score=36.08 Aligned_cols=48 Identities=33% Similarity=0.634 Sum_probs=36.2
Q ss_pred CccccccCccccCc---cccccCC-------CCCccchhhhhhhhhcC-CCCCcccccc
Q 038999 126 FDCAVCLCEFSEQD---KLRLLPM-------CSHAFHIDCIDTWLLSN-STCPLCRGNL 173 (360)
Q Consensus 126 ~~C~ICle~f~~~~---~~~~lp~-------C~H~FH~~CI~~Wl~~~-~tCP~CR~~l 173 (360)
..|.||...|..++ ..+++.. |+|..+..|++.-+... ..||.||...
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 56999999998432 3333433 99999999999987654 4799998754
No 236
>PRK00523 hypothetical protein; Provisional
Probab=25.45 E-value=1.7e+02 Score=22.98 Aligned_cols=11 Identities=0% Similarity=0.048 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q 038999 57 LQLLIRFVIRR 67 (360)
Q Consensus 57 l~llvr~l~Rr 67 (360)
+++..+++.+.
T Consensus 23 ffiark~~~k~ 33 (72)
T PRK00523 23 YFVSKKMFKKQ 33 (72)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 237
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.27 E-value=37 Score=36.33 Aligned_cols=31 Identities=23% Similarity=0.484 Sum_probs=13.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 35 KISPAILFIIVILAVVFFISGVLQLLIRFVI 65 (360)
Q Consensus 35 ~isp~iliIIvIL~ivf~i~~ll~llvr~l~ 65 (360)
.+.|.++++.++++++|++++++++..++|+
T Consensus 6 ~l~pl~~~~~ivvv~i~~ilv~if~~~~~y~ 36 (548)
T COG2268 6 GLMPLLMLIAIVVVVILVILVLIFFGKRFYI 36 (548)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhheeEE
Confidence 4566644444444444444433333334443
No 238
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=25.06 E-value=1.8e+02 Score=24.91 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=20.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 35 KISPAILFIIVILAVVFFISGVLQLLIRFVI 65 (360)
Q Consensus 35 ~isp~iliIIvIL~ivf~i~~ll~llvr~l~ 65 (360)
...|+.|.++|+-+++|.-+++.+|...+..
T Consensus 6 ~~~~a~Ia~mVlGFi~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 6 RWKPAWIAAMVLGFIVFWPLGLALLAYMIWG 36 (115)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777777776666555443
No 239
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=24.76 E-value=1.6e+02 Score=23.45 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038999 42 FIIVILAVVFFISGVLQLLIRFVIRR 67 (360)
Q Consensus 42 iIIvIL~ivf~i~~ll~llvr~l~Rr 67 (360)
+.++-..+||++++++++++++..+.
T Consensus 10 l~v~GM~~VF~fL~lLi~~i~~~~~~ 35 (82)
T TIGR01195 10 LTVLGMGIVFLFLSLLIYAVRGMGKV 35 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555444
No 240
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.62 E-value=80 Score=36.38 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=34.3
Q ss_pred CCccccccCccccC---ccccccCCCCCccchhhhhhhhh-cCCCCCccccccccCC
Q 038999 125 PFDCAVCLCEFSEQ---DKLRLLPMCSHAFHIDCIDTWLL-SNSTCPLCRGNLYIHG 177 (360)
Q Consensus 125 ~~~C~ICle~f~~~---~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~ 177 (360)
...|.||-++.... +.-.....|+--.|..|.+-=.+ .+++||.|+...-...
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~ 71 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHK 71 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 35799999986432 32222223666699999854332 3567999998876543
No 241
>PLN02400 cellulose synthase
Probab=24.32 E-value=75 Score=36.76 Aligned_cols=52 Identities=17% Similarity=0.331 Sum_probs=33.3
Q ss_pred CccccccCcccc---CccccccCCCCCccchhhhhhhh-hcCCCCCccccccccCC
Q 038999 126 FDCAVCLCEFSE---QDKLRLLPMCSHAFHIDCIDTWL-LSNSTCPLCRGNLYIHG 177 (360)
Q Consensus 126 ~~C~ICle~f~~---~~~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~~~ 177 (360)
..|.||-++... ++.-.....|+--.|..|.+-=. ..++.||-|+...-.+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc
Confidence 489999998643 22222222366668999984321 23578999998876543
No 242
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.02 E-value=1.2e+02 Score=26.98 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=10.8
Q ss_pred CCcchhhhhcCCCCCCccccccCc
Q 038999 111 LPVFLYREIMGLKEPFDCAVCLCE 134 (360)
Q Consensus 111 Lp~~~~~~~~~~~~~~~C~ICle~ 134 (360)
+-.++|..-.+...+...++|+=+
T Consensus 83 vgvvRYnAF~dmGg~LSFslAlLD 106 (151)
T PF14584_consen 83 VGVVRYNAFEDMGGDLSFSLALLD 106 (151)
T ss_pred EEEEEccCcccccccceeeeEEEe
Confidence 334444443333344455555544
No 243
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=23.75 E-value=40 Score=33.19 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=19.5
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 038999 27 QKESSSGNKISPAILFIIVILAVVFFISGVL 57 (360)
Q Consensus 27 ~~~sSS~~~isp~iliIIvIL~ivf~i~~ll 57 (360)
-+.+|..+++.|.+++|-+|++++|+.++++
T Consensus 268 nss~S~s~~l~piil~IG~vl~i~~Ig~~if 298 (305)
T PF04639_consen 268 NSSKSVSDSLLPIILIIGGVLLIVFIGYFIF 298 (305)
T ss_pred CccchhhhhhhHHHHHHHHHHHHHHhhheee
Confidence 3445666677777777777766666655443
No 244
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=23.70 E-value=63 Score=30.69 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 038999 50 VFFISGVLQLLIR 62 (360)
Q Consensus 50 vf~i~~ll~llvr 62 (360)
|++++++.++++|
T Consensus 237 v~~~Fi~mvl~ir 249 (251)
T PF09753_consen 237 VIIVFIMMVLFIR 249 (251)
T ss_pred HHHHHHHHHHHhe
Confidence 3333334444444
No 245
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=23.53 E-value=1.8e+02 Score=25.42 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038999 39 AILFIIVILAVVFFISGVLQLLIRFVIRR 67 (360)
Q Consensus 39 ~iliIIvIL~ivf~i~~ll~llvr~l~Rr 67 (360)
.+.|++++.+..||+++++.-.+|-..+.
T Consensus 44 ~lYIL~vmgfFgff~~gImlsyvRSKK~E 72 (129)
T PF02060_consen 44 YLYILVVMGFFGFFTVGIMLSYVRSKKRE 72 (129)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444444555555555555445444433
No 246
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=23.46 E-value=95 Score=21.54 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=14.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHH
Q 038999 28 KESSSGNKISPAILFIIVILAVVFFI 53 (360)
Q Consensus 28 ~~sSS~~~isp~iliIIvIL~ivf~i 53 (360)
+++..+-+++|..++++.+.++++++
T Consensus 10 ~ed~~giki~P~~Vl~~si~fi~~V~ 35 (41)
T PF03911_consen 10 EEDAPGIKIDPKTVLIISIAFIAIVI 35 (41)
T ss_dssp ---S-SS-BSCCHHHHHHHHHHHHHH
T ss_pred eccCCcceeCCeehHHHHHHHHHHHH
Confidence 34677889999988777665555433
No 247
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=23.40 E-value=1.7e+02 Score=23.55 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038999 39 AILFIIVILAVVFFISGVLQLLIRFVIRRR 68 (360)
Q Consensus 39 ~iliIIvIL~ivf~i~~ll~llvr~l~Rrr 68 (360)
.+.+.++-..+||+++++++++++++.+.-
T Consensus 11 ~~~lm~~GM~~VF~fL~lLi~~~~l~~~~~ 40 (85)
T PRK03814 11 AATLMLTGMGVVFIFLTLLVYLVQLMSKLI 40 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555556666666667777777766654
No 248
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=23.19 E-value=40 Score=36.25 Aligned_cols=36 Identities=22% Similarity=0.503 Sum_probs=24.2
Q ss_pred CCCCccccccCccccC-----c-----cccccCCCCCccchhhhhhh
Q 038999 123 KEPFDCAVCLCEFSEQ-----D-----KLRLLPMCSHAFHIDCIDTW 159 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~-----~-----~~~~lp~C~H~FH~~CI~~W 159 (360)
.....|+||.|.|+.- + ..+.+. =|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE-FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec-cCceeeccccchH
Confidence 3457899999998731 1 112232 4789999998774
No 249
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=23.00 E-value=45 Score=31.70 Aligned_cols=26 Identities=19% Similarity=0.630 Sum_probs=18.3
Q ss_pred CccccccCccccCccccccCCCCCccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFH 152 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH 152 (360)
+.||+|...+...+.--..+ ++|.|-
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~fd 28 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQFD 28 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCCc
Confidence 57999999997655444444 578873
No 250
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.00 E-value=33 Score=30.23 Aligned_cols=52 Identities=25% Similarity=0.514 Sum_probs=28.4
Q ss_pred CCCCCCccccccCc-cccCccccccCCCCCccchhhhhhhhhc-CC---CCCcccccc
Q 038999 121 GLKEPFDCAVCLCE-FSEQDKLRLLPMCSHAFHIDCIDTWLLS-NS---TCPLCRGNL 173 (360)
Q Consensus 121 ~~~~~~~C~ICle~-f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~---tCP~CR~~l 173 (360)
+..++.+|.||+.. |.++-.-...- |.-.||..|--.--.+ ++ .|-+|+...
T Consensus 61 Gv~ddatC~IC~KTKFADG~GH~C~Y-Cq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFADGCGHNCSY-CQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred ccCcCcchhhhhhcccccccCcccch-hhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 34566899999875 44432222222 3344566665443222 33 388997653
No 251
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=22.93 E-value=35 Score=33.88 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=30.3
Q ss_pred CCccccccCccccCcccccc---CCCCCccchhhhhhhhhcCCCCCcccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLL---PMCSHAFHIDCIDTWLLSNSTCPLCRG 171 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~l---p~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (360)
...|+||-..=... .++.- ..=.|.+|.-|-..|-.....||.|-.
T Consensus 184 ~~~CPvCGs~P~~s-~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVAS-MVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhh-hhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 34899998762211 11111 112367888899999888899999954
No 252
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.91 E-value=34 Score=35.41 Aligned_cols=37 Identities=16% Similarity=0.375 Sum_probs=26.5
Q ss_pred CccccccCccccCccccc----cCCCCCccchhhhhhhhhc
Q 038999 126 FDCAVCLCEFSEQDKLRL----LPMCSHAFHIDCIDTWLLS 162 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~----lp~C~H~FH~~CI~~Wl~~ 162 (360)
..|+.|...++.+..... ...|+|.||..|+..|...
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 459999999887663221 1138999999998888654
No 253
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.86 E-value=31 Score=24.92 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=5.8
Q ss_pred CCCccccccccC
Q 038999 165 TCPLCRGNLYIH 176 (360)
Q Consensus 165 tCP~CR~~l~~~ 176 (360)
.||+|.++|...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 799998877543
No 254
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.78 E-value=34 Score=23.57 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=14.3
Q ss_pred CCCCccchhhhhhhhhcCCCCCcccc
Q 038999 146 MCSHAFHIDCIDTWLLSNSTCPLCRG 171 (360)
Q Consensus 146 ~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (360)
.|||.|-...-..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 37777664432211 23456999976
No 255
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=22.53 E-value=1.9e+02 Score=22.15 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038999 41 LFIIVILAVVFFISGVLQLLIRF 63 (360)
Q Consensus 41 liIIvIL~ivf~i~~ll~llvr~ 63 (360)
+-+.+++++++++.+++.++-++
T Consensus 10 ~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 10 IGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344333444444444444
No 256
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=22.39 E-value=88 Score=26.06 Aligned_cols=45 Identities=27% Similarity=0.473 Sum_probs=27.7
Q ss_pred CccccccCccccCccccc-----cCCC---CCccchhhhhhhhhc---------CCCCCcccc
Q 038999 126 FDCAVCLCEFSEQDKLRL-----LPMC---SHAFHIDCIDTWLLS---------NSTCPLCRG 171 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~-----lp~C---~H~FH~~CI~~Wl~~---------~~tCP~CR~ 171 (360)
..|..|...-... .... .+.| .=.||..||..++.. +-.||.||.
T Consensus 8 ~~CHqCrqKt~~~-~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDF-KTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCC-ceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 4677777753321 1111 1336 567999999888743 235999986
No 257
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=22.38 E-value=2.1e+02 Score=22.75 Aligned_cols=7 Identities=29% Similarity=0.548 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 038999 59 LLIRFVI 65 (360)
Q Consensus 59 llvr~l~ 65 (360)
+++||++
T Consensus 44 liVRCfr 50 (81)
T PF11057_consen 44 LIVRCFR 50 (81)
T ss_pred HHHHHHH
Confidence 3444443
No 258
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=22.09 E-value=2.9e+02 Score=23.20 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhc
Q 038999 53 ISGVLQLLIRFVIRRR 68 (360)
Q Consensus 53 i~~ll~llvr~l~Rrr 68 (360)
....+.++++.+++++
T Consensus 87 ~A~~Lal~i~~yr~~g 102 (114)
T PRK08389 87 TALALSVAIKLYEKYG 102 (114)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3334455555554443
No 259
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=22.04 E-value=82 Score=25.20 Aligned_cols=14 Identities=43% Similarity=0.719 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 038999 47 LAVVFFISGVLQLL 60 (360)
Q Consensus 47 L~ivf~i~~ll~ll 60 (360)
++++||++.+++++
T Consensus 75 ~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 75 FAFLFFLLVVLYIL 88 (92)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444433333
No 260
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=21.69 E-value=2.2e+02 Score=31.44 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=7.5
Q ss_pred ccccceecccCC
Q 038999 252 NLEARRCYSMGS 263 (360)
Q Consensus 252 ~~d~RR~~smgs 263 (360)
++.+..--|+|.
T Consensus 275 ~q~qisniSLG~ 286 (705)
T PF07095_consen 275 NQGQISNISLGI 286 (705)
T ss_pred ccchhceeeecc
Confidence 455555667776
No 261
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=21.68 E-value=1.7e+02 Score=27.68 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=10.1
Q ss_pred CCCCCCChHHHHHHHHHHHHH
Q 038999 31 SSGNKISPAILFIIVILAVVF 51 (360)
Q Consensus 31 SS~~~isp~iliIIvIL~ivf 51 (360)
.+...---+-+|||.||+++.
T Consensus 124 n~~K~amLIClIIIAVLfLIC 144 (227)
T PF05399_consen 124 NNNKMAMLICLIIIAVLFLIC 144 (227)
T ss_pred CccchhHHHHHHHHHHHHHHH
Confidence 334555555555555544443
No 262
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=21.62 E-value=61 Score=30.67 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038999 40 ILFIIVILAVVFFISGVLQ 58 (360)
Q Consensus 40 iliIIvIL~ivf~i~~ll~ 58 (360)
++|+|++|+|+++...+|+
T Consensus 18 iaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 18 IAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHHHHHHHhhhhee
No 263
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.57 E-value=31 Score=35.92 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 038999 45 VILAVVFFISGVLQLLIRFVIRRR 68 (360)
Q Consensus 45 vIL~ivf~i~~ll~llvr~l~Rrr 68 (360)
++++.++++++++.+++.++.+++
T Consensus 356 ~vVlgvavlivVv~viv~vc~~~r 379 (439)
T PF02480_consen 356 GVVLGVAVLIVVVGVIVWVCLRCR 379 (439)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHhheeeeeh
Confidence 333334445555555544444443
No 264
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=21.43 E-value=1.1e+02 Score=24.69 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 038999 43 IIVILAVVFFISGVLQ 58 (360)
Q Consensus 43 IIvIL~ivf~i~~ll~ 58 (360)
.+..++++++|+++++
T Consensus 26 ~lMtILivLVIIiLlI 41 (85)
T PF10717_consen 26 TLMTILIVLVIIILLI 41 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444443333
No 265
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=21.32 E-value=1.2e+02 Score=22.53 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=14.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHH
Q 038999 34 NKISPAILFIIVILAVVFFISGVL 57 (360)
Q Consensus 34 ~~isp~iliIIvIL~ivf~i~~ll 57 (360)
+..+|.-+++..+++.++|+.+++
T Consensus 26 ~~~~p~~~Ii~gii~~~~fV~~Lv 49 (56)
T PF11174_consen 26 AQGSPVHFIIVGIILAALFVAGLV 49 (56)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHH
Confidence 345666666666666666655443
No 266
>PRK01253 preprotein translocase subunit SecG; Reviewed
Probab=21.09 E-value=51 Score=24.38 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 038999 26 YQKESSSGNKISPAILFIIVILAVVFFIS 54 (360)
Q Consensus 26 ~~~~sSS~~~isp~iliIIvIL~ivf~i~ 54 (360)
|-++++.+-+++|..++++.++++++.++
T Consensus 19 yy~ed~~~iKi~P~~Vi~~~~~~~~~v~~ 47 (54)
T PRK01253 19 YFEEETEAIKIDPKTVIAIGLALGIFVLV 47 (54)
T ss_pred hhhcccCccccCCeeeeeeHHHHHHHHHH
Confidence 33558889999999887777766665443
No 267
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=20.77 E-value=1.9e+02 Score=25.12 Aligned_cols=8 Identities=13% Similarity=0.555 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 038999 38 PAILFIIV 45 (360)
Q Consensus 38 p~iliIIv 45 (360)
|.+.++++
T Consensus 21 ~GWwll~~ 28 (146)
T PF14316_consen 21 PGWWLLLA 28 (146)
T ss_pred HHHHHHHH
Confidence 34443333
No 268
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.73 E-value=36 Score=30.58 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=30.7
Q ss_pred ccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 129 AVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 129 ~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
.||++--...+....-|.=.+.||.+|-..-+ ..||.|..+|.-
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI---~~Cp~C~~~IrG 51 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTI---TSCPNCSTPIRG 51 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHH---HHCcCCCCCCCC
Confidence 47777766555555554456789999987754 469999888754
No 269
>PHA03029 hypothetical protein; Provisional
Probab=20.69 E-value=3.2e+02 Score=21.77 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 038999 53 ISGVLQLLIRFVI 65 (360)
Q Consensus 53 i~~ll~llvr~l~ 65 (360)
++.++-++..+++
T Consensus 20 ila~igiiwg~ll 32 (92)
T PHA03029 20 ILAIIGIIWGFLL 32 (92)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444443
No 270
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=20.59 E-value=1.4e+02 Score=31.71 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 038999 51 FFISGVLQLLIRF 63 (360)
Q Consensus 51 f~i~~ll~llvr~ 63 (360)
|++++++++++|.
T Consensus 481 ~~~~~~~i~~~~~ 493 (507)
T PF07245_consen 481 ILIFVLLIFICRS 493 (507)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444443
No 271
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=20.46 E-value=1.5e+02 Score=26.20 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 038999 49 VVFFISGVLQLLIR 62 (360)
Q Consensus 49 ivf~i~~ll~llvr 62 (360)
+++++++.++..+|
T Consensus 128 ~ll~i~~giy~~~r 141 (145)
T PF10661_consen 128 ILLAICGGIYVVLR 141 (145)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333443443333
No 272
>PRK14710 hypothetical protein; Provisional
Probab=20.40 E-value=84 Score=24.72 Aligned_cols=18 Identities=33% Similarity=0.683 Sum_probs=9.1
Q ss_pred CCCChHHHHHHHHHHHHH
Q 038999 34 NKISPAILFIIVILAVVF 51 (360)
Q Consensus 34 ~~isp~iliIIvIL~ivf 51 (360)
++++..+++|+.|+++++
T Consensus 6 sn~skm~ififaiii~v~ 23 (86)
T PRK14710 6 SNLSKMIIFIFAIIIIVV 23 (86)
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 355655555555444443
No 273
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=20.29 E-value=44 Score=36.74 Aligned_cols=49 Identities=20% Similarity=0.398 Sum_probs=31.0
Q ss_pred CCccccccCccccCcc--ccccC----CCCCccchhhhhhh----------hhcCCCCCcccccc
Q 038999 125 PFDCAVCLCEFSEQDK--LRLLP----MCSHAFHIDCIDTW----------LLSNSTCPLCRGNL 173 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~--~~~lp----~C~H~FH~~CI~~W----------l~~~~tCP~CR~~l 173 (360)
.-+|=||.|+=.+.+. -.++. .|.-.||..|...- +..-+.|-.|...+
T Consensus 117 nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 117 NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred cceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 3589999998554431 11222 36788999998653 12235699997654
No 274
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=20.26 E-value=60 Score=28.98 Aligned_cols=25 Identities=28% Similarity=0.580 Sum_probs=18.6
Q ss_pred cchhhhhhhhhcCC----CCCcccccccc
Q 038999 151 FHIDCIDTWLLSNS----TCPLCRGNLYI 175 (360)
Q Consensus 151 FH~~CI~~Wl~~~~----tCP~CR~~l~~ 175 (360)
||..||++=|..-. .||.|+..-..
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKSG 30 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCCC
Confidence 89999999876533 49999865433
Done!