Query 038999
Match_columns 360
No_of_seqs 345 out of 1828
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:31:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 2.4E-16 8.3E-21 126.0 4.8 76 99-175 13-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 2.3E-16 7.8E-21 121.2 2.5 68 107-175 5-72 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 1.3E-14 4.4E-19 104.5 4.5 52 123-174 3-54 (55)
4 2ect_A Ring finger protein 126 99.5 3.8E-14 1.3E-18 109.2 5.0 55 123-178 13-67 (78)
5 2ep4_A Ring finger protein 24; 99.4 3.2E-14 1.1E-18 108.6 3.4 54 122-176 12-65 (74)
6 2kiz_A E3 ubiquitin-protein li 99.4 7.3E-14 2.5E-18 105.2 4.7 53 123-176 12-64 (69)
7 2ecl_A Ring-box protein 2; RNF 99.4 7E-14 2.4E-18 109.5 3.2 53 124-176 14-77 (81)
8 1v87_A Deltex protein 2; ring- 99.4 4.4E-13 1.5E-17 110.4 5.9 52 124-176 24-95 (114)
9 2ecm_A Ring finger and CHY zin 99.3 4.5E-13 1.5E-17 96.2 3.8 50 124-174 4-54 (55)
10 3ng2_A RNF4, snurf, ring finge 99.3 5.4E-13 1.8E-17 100.5 2.8 54 123-177 8-65 (71)
11 3dpl_R Ring-box protein 1; ubi 99.3 8.7E-13 3E-17 108.9 3.4 51 124-175 36-101 (106)
12 2ea6_A Ring finger protein 4; 99.3 7.6E-13 2.6E-17 98.9 2.7 51 123-174 13-67 (69)
13 2ecn_A Ring finger protein 141 99.3 8.3E-13 2.9E-17 99.6 2.5 52 121-177 11-62 (70)
14 2xeu_A Ring finger protein 4; 99.3 8.7E-13 3E-17 97.1 2.1 52 124-176 2-57 (64)
15 2ct2_A Tripartite motif protei 99.3 3.2E-12 1.1E-16 100.1 5.0 55 122-177 12-70 (88)
16 2d8t_A Dactylidin, ring finger 99.2 3.9E-12 1.3E-16 96.5 3.1 50 123-176 13-62 (71)
17 2djb_A Polycomb group ring fin 99.2 6.8E-12 2.3E-16 95.4 4.2 53 122-177 12-64 (72)
18 2d8s_A Cellular modulator of i 99.2 5.9E-12 2E-16 98.9 3.7 52 123-176 13-71 (80)
19 1chc_A Equine herpes virus-1 r 99.2 6.5E-12 2.2E-16 94.0 3.4 49 124-175 4-52 (68)
20 4a0k_B E3 ubiquitin-protein li 99.2 2.2E-12 7.4E-17 108.5 0.3 51 124-175 47-112 (117)
21 2yur_A Retinoblastoma-binding 99.2 1.7E-11 5.8E-16 93.8 4.1 51 123-176 13-65 (74)
22 2ysl_A Tripartite motif-contai 99.2 1.9E-11 6.4E-16 92.6 4.2 51 122-176 17-70 (73)
23 2ecy_A TNF receptor-associated 99.1 2E-11 6.8E-16 91.1 4.1 51 122-176 12-63 (66)
24 2ct0_A Non-SMC element 1 homol 99.1 2.9E-11 1E-15 93.7 5.0 49 124-175 14-64 (74)
25 2csy_A Zinc finger protein 183 99.1 2E-11 6.8E-16 94.7 3.6 48 123-174 13-60 (81)
26 4ayc_A E3 ubiquitin-protein li 99.1 1.9E-11 6.6E-16 104.5 3.0 47 125-175 53-99 (138)
27 2ecv_A Tripartite motif-contai 99.1 7.9E-11 2.7E-15 91.0 6.2 52 122-177 16-73 (85)
28 2egp_A Tripartite motif-contai 99.1 3.1E-11 1.1E-15 92.6 3.7 52 122-177 9-67 (79)
29 2ecw_A Tripartite motif-contai 99.1 7.4E-11 2.5E-15 91.2 4.6 51 122-176 16-72 (85)
30 1t1h_A Gspef-atpub14, armadill 99.1 5.6E-11 1.9E-15 91.3 3.9 50 123-176 6-56 (78)
31 3lrq_A E3 ubiquitin-protein li 99.1 4.9E-11 1.7E-15 96.6 3.0 50 124-177 21-72 (100)
32 4ap4_A E3 ubiquitin ligase RNF 99.0 6E-11 2E-15 98.9 2.5 53 124-177 6-62 (133)
33 2ysj_A Tripartite motif-contai 99.0 1.5E-10 5E-15 85.5 3.8 44 122-169 17-63 (63)
34 2y43_A E3 ubiquitin-protein li 99.0 1.1E-10 3.9E-15 93.8 3.4 48 125-176 22-70 (99)
35 1g25_A CDK-activating kinase a 99.0 1.3E-10 4.4E-15 86.4 3.4 52 125-177 3-57 (65)
36 2ecj_A Tripartite motif-contai 99.0 2.3E-10 7.8E-15 82.6 4.0 44 122-169 12-58 (58)
37 2ckl_A Polycomb group ring fin 99.0 1.6E-10 5.4E-15 94.5 2.8 51 123-176 13-63 (108)
38 4ap4_A E3 ubiquitin ligase RNF 99.0 1.4E-10 4.9E-15 96.6 2.6 54 123-177 70-127 (133)
39 3fl2_A E3 ubiquitin-protein li 99.0 2.3E-10 7.9E-15 95.7 3.1 48 124-175 51-99 (124)
40 1jm7_A BRCA1, breast cancer ty 99.0 4.5E-10 1.5E-14 91.7 4.6 49 125-177 21-72 (112)
41 3ztg_A E3 ubiquitin-protein li 98.9 2.6E-10 8.8E-15 90.3 3.0 50 122-174 10-61 (92)
42 2ckl_B Ubiquitin ligase protei 98.9 4.6E-10 1.6E-14 98.4 3.0 49 124-175 53-102 (165)
43 3hct_A TNF receptor-associated 98.9 4.5E-10 1.5E-14 93.4 2.5 51 122-176 15-66 (118)
44 3l11_A E3 ubiquitin-protein li 98.9 5.3E-10 1.8E-14 92.2 2.0 47 125-175 15-62 (115)
45 1bor_A Transcription factor PM 98.9 1.5E-09 5.2E-14 78.8 4.1 47 123-176 4-50 (56)
46 1z6u_A NP95-like ring finger p 98.9 9.2E-10 3.1E-14 95.8 3.4 49 124-176 77-126 (150)
47 1e4u_A Transcriptional repress 98.8 4.5E-09 1.6E-13 81.9 6.3 57 122-179 8-66 (78)
48 1rmd_A RAG1; V(D)J recombinati 98.8 1.3E-09 4.4E-14 90.0 3.0 49 125-177 23-72 (116)
49 2kre_A Ubiquitin conjugation f 98.8 2E-09 6.8E-14 87.7 3.9 50 123-176 27-76 (100)
50 2kr4_A Ubiquitin conjugation f 98.8 1.9E-09 6.5E-14 85.1 3.7 50 123-176 12-61 (85)
51 1wgm_A Ubiquitin conjugation f 98.8 2.6E-09 8.7E-14 86.7 4.3 50 123-176 20-70 (98)
52 1jm7_B BARD1, BRCA1-associated 98.8 2.5E-09 8.7E-14 88.7 4.1 46 125-176 22-68 (117)
53 2vje_A E3 ubiquitin-protein li 98.8 2E-09 6.9E-14 80.5 2.0 47 124-174 7-56 (64)
54 2y1n_A E3 ubiquitin-protein li 98.7 3.2E-09 1.1E-13 105.5 3.7 49 125-177 332-381 (389)
55 3knv_A TNF receptor-associated 98.7 2.6E-09 8.8E-14 92.1 1.3 50 122-175 28-78 (141)
56 3k1l_B Fancl; UBC, ring, RWD, 98.7 8.1E-09 2.8E-13 100.9 3.5 53 123-175 306-373 (381)
57 4ic3_A E3 ubiquitin-protein li 98.6 8.9E-09 3E-13 78.9 2.7 43 125-175 24-67 (74)
58 2vje_B MDM4 protein; proto-onc 98.6 7.3E-09 2.5E-13 77.2 1.9 46 125-174 7-55 (63)
59 2c2l_A CHIP, carboxy terminus 98.6 1.6E-08 5.5E-13 94.1 3.4 50 124-177 207-257 (281)
60 2yu4_A E3 SUMO-protein ligase 98.6 1.5E-08 5.1E-13 81.2 2.1 51 123-176 5-64 (94)
61 3hcs_A TNF receptor-associated 98.6 1.9E-08 6.5E-13 88.4 2.4 52 121-176 14-66 (170)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.5 4.8E-08 1.7E-12 72.4 3.4 48 123-174 4-58 (60)
63 2ecg_A Baculoviral IAP repeat- 98.5 7.2E-08 2.5E-12 73.8 3.1 42 126-175 26-68 (75)
64 2f42_A STIP1 homology and U-bo 98.4 6.8E-08 2.3E-12 86.6 2.6 51 123-177 104-155 (179)
65 2ea5_A Cell growth regulator w 98.4 1.3E-07 4.4E-12 71.5 3.8 45 123-175 13-58 (68)
66 1wim_A KIAA0161 protein; ring 98.4 7.5E-08 2.6E-12 76.7 2.4 48 124-172 4-61 (94)
67 2yho_A E3 ubiquitin-protein li 98.3 1.6E-07 5.3E-12 73.1 2.4 43 126-176 19-62 (79)
68 2bay_A PRE-mRNA splicing facto 98.3 2.5E-07 8.7E-12 68.6 1.8 50 126-178 4-53 (61)
69 3t6p_A Baculoviral IAP repeat- 98.2 3.5E-07 1.2E-11 89.8 2.9 45 123-175 293-338 (345)
70 3htk_C E3 SUMO-protein ligase 98.1 8.4E-07 2.9E-11 83.8 2.5 52 123-177 179-234 (267)
71 3nw0_A Non-structural maintena 97.8 1.2E-05 4.2E-10 74.9 4.9 50 124-176 179-230 (238)
72 3vk6_A E3 ubiquitin-protein li 97.8 7.4E-06 2.5E-10 66.5 2.7 46 127-175 3-49 (101)
73 2ko5_A Ring finger protein Z; 95.0 0.022 7.6E-07 45.6 4.3 49 123-177 26-75 (99)
74 2lri_C Autoimmune regulator; Z 94.1 0.037 1.3E-06 41.3 3.4 45 124-172 11-59 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 92.2 0.059 2E-06 42.5 2.1 33 125-158 3-35 (101)
76 1we9_A PHD finger family prote 89.4 0.15 5.1E-06 37.3 1.8 49 123-171 4-57 (64)
77 1mm2_A MI2-beta; PHD, zinc fin 89.0 0.29 9.9E-06 35.6 3.2 45 124-172 8-56 (61)
78 2l5u_A Chromodomain-helicase-D 88.6 0.3 1E-05 35.5 3.0 45 123-171 9-57 (61)
79 1wil_A KIAA1045 protein; ring 88.3 0.4 1.4E-05 37.6 3.7 34 124-159 14-47 (89)
80 3o36_A Transcription intermedi 87.8 0.24 8.1E-06 43.6 2.4 44 125-172 4-51 (184)
81 3u5n_A E3 ubiquitin-protein li 86.8 0.24 8.3E-06 44.4 1.9 45 124-172 6-54 (207)
82 1f62_A Transcription factor WS 86.7 0.39 1.3E-05 33.3 2.6 44 127-171 2-49 (51)
83 2yql_A PHD finger protein 21A; 85.1 0.25 8.7E-06 35.2 0.9 44 124-171 8-55 (56)
84 3lqh_A Histone-lysine N-methyl 85.0 0.43 1.5E-05 42.4 2.6 47 126-172 3-63 (183)
85 1xwh_A Autoimmune regulator; P 84.0 0.32 1.1E-05 35.9 1.1 45 123-171 6-54 (66)
86 2k16_A Transcription initiatio 82.9 0.36 1.2E-05 36.3 1.0 50 124-174 17-70 (75)
87 3v43_A Histone acetyltransfera 82.7 0.63 2.2E-05 37.8 2.5 45 127-171 63-111 (112)
88 2ro1_A Transcription intermedi 82.5 0.68 2.3E-05 41.1 2.8 43 126-172 3-49 (189)
89 2e6r_A Jumonji/ARID domain-con 81.7 0.32 1.1E-05 38.4 0.3 48 124-172 15-66 (92)
90 2ysm_A Myeloid/lymphoid or mix 81.6 0.82 2.8E-05 36.8 2.7 46 124-170 6-55 (111)
91 2puy_A PHD finger protein 21A; 81.3 0.41 1.4E-05 34.5 0.7 47 125-175 5-55 (60)
92 1fp0_A KAP-1 corepressor; PHD 81.1 1.7 5.7E-05 34.2 4.3 45 123-171 23-71 (88)
93 2lv9_A Histone-lysine N-methyl 77.8 1.2 4.3E-05 35.3 2.6 45 125-171 28-75 (98)
94 2e6s_A E3 ubiquitin-protein li 77.7 0.75 2.6E-05 35.2 1.2 44 127-171 28-76 (77)
95 2l43_A N-teminal domain from h 77.1 0.93 3.2E-05 35.4 1.6 52 123-174 23-77 (88)
96 3shb_A E3 ubiquitin-protein li 76.4 0.95 3.2E-05 34.6 1.5 44 127-171 28-76 (77)
97 1weu_A Inhibitor of growth fam 76.2 2.3 7.8E-05 33.6 3.7 45 123-172 34-85 (91)
98 2xb1_A Pygopus homolog 2, B-ce 76.1 0.56 1.9E-05 37.9 0.1 47 126-172 4-61 (105)
99 3asl_A E3 ubiquitin-protein li 76.1 0.92 3.1E-05 33.9 1.3 44 127-171 20-68 (70)
100 3m62_A Ubiquitin conjugation f 74.9 1.5 5.1E-05 48.1 3.0 51 123-177 889-940 (968)
101 2ku3_A Bromodomain-containing 74.1 1.3 4.3E-05 33.3 1.6 49 123-171 14-65 (71)
102 1wep_A PHF8; structural genomi 73.8 1.9 6.5E-05 32.7 2.6 47 125-172 12-63 (79)
103 1wev_A Riken cDNA 1110020M19; 72.6 1.3 4.5E-05 34.5 1.5 50 125-174 16-74 (88)
104 1z60_A TFIIH basal transcripti 72.6 1.5 5.3E-05 31.9 1.7 43 126-169 16-58 (59)
105 2kgg_A Histone demethylase jar 71.0 2.3 7.8E-05 29.7 2.3 44 127-170 4-52 (52)
106 2ri7_A Nucleosome-remodeling f 70.9 0.91 3.1E-05 39.3 0.2 48 124-172 7-59 (174)
107 2yt5_A Metal-response element- 70.7 2 6.8E-05 31.2 2.0 50 123-172 4-61 (66)
108 2jwa_A Receptor tyrosine-prote 70.0 12 0.00042 25.6 5.6 11 59-69 29-39 (44)
109 1wen_A Inhibitor of growth fam 69.6 3.7 0.00012 30.7 3.3 45 123-172 14-65 (71)
110 2lbm_A Transcriptional regulat 66.8 4.5 0.00015 34.5 3.6 44 124-171 62-116 (142)
111 2knc_A Integrin alpha-IIB; tra 66.7 16 0.00055 26.1 6.0 27 37-63 10-36 (54)
112 2vpb_A Hpygo1, pygopus homolog 66.4 2.8 9.7E-05 30.8 2.0 35 124-158 7-42 (65)
113 2l2t_A Receptor tyrosine-prote 66.2 14 0.00048 25.3 5.4 12 58-69 27-38 (44)
114 3ask_A E3 ubiquitin-protein li 66.1 2.2 7.5E-05 39.2 1.7 44 127-171 176-224 (226)
115 2klu_A T-cell surface glycopro 64.5 3.9 0.00013 30.5 2.4 8 147-154 59-66 (70)
116 1wee_A PHD finger family prote 64.0 1.8 6E-05 32.3 0.5 47 124-171 15-65 (72)
117 1y02_A CARP2, FYVE-ring finger 63.9 1.6 5.5E-05 36.2 0.3 47 126-172 20-66 (120)
118 1weo_A Cellulose synthase, cat 63.7 36 0.0012 26.8 7.9 52 125-176 16-71 (93)
119 1wew_A DNA-binding family prot 63.7 2.3 8E-05 32.2 1.2 48 124-172 15-72 (78)
120 2kwj_A Zinc finger protein DPF 60.6 3.3 0.00011 33.6 1.6 35 126-160 2-42 (114)
121 2ks1_B Epidermal growth factor 60.2 10 0.00034 26.0 3.7 11 59-69 29-39 (44)
122 4gne_A Histone-lysine N-methyl 60.1 7.7 0.00026 31.4 3.7 48 123-176 13-66 (107)
123 2ysm_A Myeloid/lymphoid or mix 59.4 2.5 8.5E-05 33.9 0.7 44 127-171 56-103 (111)
124 3o70_A PHD finger protein 13; 59.3 3.6 0.00012 30.5 1.5 47 123-171 17-66 (68)
125 3v43_A Histone acetyltransfera 57.9 9.1 0.00031 30.7 3.9 34 125-158 5-43 (112)
126 1wem_A Death associated transc 57.7 3.5 0.00012 30.8 1.2 45 126-172 17-70 (76)
127 1wfk_A Zinc finger, FYVE domai 57.6 6.1 0.00021 30.7 2.6 53 123-175 7-66 (88)
128 1z2q_A LM5-1; membrane protein 57.2 7.1 0.00024 29.8 2.9 36 124-159 20-55 (84)
129 2yw8_A RUN and FYVE domain-con 57.0 6.9 0.00024 29.8 2.8 38 123-160 17-54 (82)
130 2kwj_A Zinc finger protein DPF 56.9 2.1 7.1E-05 34.8 -0.2 46 127-173 60-109 (114)
131 2jo1_A Phospholemman; FXYD1, N 56.7 27 0.00093 26.2 5.8 27 41-67 17-43 (72)
132 2k1a_A Integrin alpha-IIB; sin 56.0 20 0.0007 24.2 4.7 27 36-62 7-33 (42)
133 3mpx_A FYVE, rhogef and PH dom 55.8 2.4 8.3E-05 41.4 0.0 50 124-173 374-430 (434)
134 3t7l_A Zinc finger FYVE domain 55.7 6.1 0.00021 30.7 2.3 49 125-173 20-74 (90)
135 3c6w_A P28ING5, inhibitor of g 55.7 3.4 0.00012 29.7 0.8 44 123-171 7-57 (59)
136 1joc_A EEA1, early endosomal a 54.9 6.1 0.00021 32.7 2.3 36 124-159 68-103 (125)
137 1x4u_A Zinc finger, FYVE domai 54.9 7.9 0.00027 29.5 2.8 36 123-158 12-47 (84)
138 2l8s_A Integrin alpha-1; trans 54.3 23 0.00078 25.3 4.9 27 37-63 7-33 (54)
139 3ql9_A Transcriptional regulat 54.2 9.3 0.00032 32.0 3.4 46 123-172 55-111 (129)
140 1dvp_A HRS, hepatocyte growth 53.8 6.1 0.00021 35.4 2.4 37 124-160 160-196 (220)
141 3zyq_A Hepatocyte growth facto 52.8 6.5 0.00022 35.6 2.4 49 125-173 164-220 (226)
142 2rsd_A E3 SUMO-protein ligase 52.5 2.6 8.9E-05 31.0 -0.3 46 125-171 10-64 (68)
143 1vfy_A Phosphatidylinositol-3- 52.3 8.7 0.0003 28.5 2.6 34 126-159 12-45 (73)
144 2vnf_A ING 4, P29ING4, inhibit 52.3 4 0.00014 29.4 0.7 43 124-171 9-58 (60)
145 2jp3_A FXYD domain-containing 50.5 14 0.00049 27.4 3.5 29 40-68 17-45 (67)
146 1wyh_A SLIM 2, skeletal muscle 50.0 11 0.00036 27.1 2.7 40 126-175 6-45 (72)
147 2k1k_A Ephrin type-A receptor 49.5 27 0.00093 22.9 4.4 7 35-41 7-13 (38)
148 1x61_A Thyroid receptor intera 49.3 15 0.00052 26.2 3.5 40 125-174 5-44 (72)
149 2jmo_A Parkin; IBR, E3 ligase, 48.3 3.9 0.00013 31.1 0.1 14 146-159 55-68 (80)
150 1zbd_B Rabphilin-3A; G protein 47.3 9.1 0.00031 32.1 2.2 50 123-172 53-107 (134)
151 1iml_A CRIP, cysteine rich int 47.2 8.5 0.00029 28.1 1.9 38 127-175 2-39 (76)
152 1x4l_A Skeletal muscle LIM-pro 47.1 20 0.00069 25.6 3.9 40 125-174 5-46 (72)
153 2dj7_A Actin-binding LIM prote 47.1 13 0.00046 27.6 3.0 39 125-174 15-53 (80)
154 2l3k_A Rhombotin-2, linker, LI 46.7 13 0.00044 29.9 3.0 37 127-173 10-46 (123)
155 2co8_A NEDD9 interacting prote 46.5 18 0.00063 26.8 3.7 41 125-176 15-55 (82)
156 2ww9_C Protein transport prote 46.5 12 0.00041 29.3 2.6 35 28-64 51-85 (87)
157 2ct7_A Ring finger protein 31; 46.5 3.3 0.00011 31.8 -0.6 42 128-169 28-73 (86)
158 3mjh_B Early endosome antigen 46.2 2.7 9.1E-05 27.3 -1.0 17 124-140 4-20 (34)
159 1x4k_A Skeletal muscle LIM-pro 45.1 11 0.00038 26.9 2.2 40 126-175 6-45 (72)
160 1g47_A Pinch protein; LIM doma 44.7 15 0.00053 26.5 3.0 41 125-175 11-51 (77)
161 2cu8_A Cysteine-rich protein 2 44.5 11 0.00039 27.3 2.2 40 125-175 9-48 (76)
162 3i2d_A E3 SUMO-protein ligase 44.3 11 0.00038 36.9 2.7 48 126-177 250-302 (371)
163 2g6q_A Inhibitor of growth pro 43.4 6.2 0.00021 28.7 0.5 46 123-171 9-59 (62)
164 2cs3_A Protein C14ORF4, MY039 43.2 17 0.00057 28.2 2.9 39 124-162 14-52 (93)
165 1x63_A Skeletal muscle LIM-pro 42.8 15 0.00052 26.9 2.7 40 126-175 16-55 (82)
166 4fo9_A E3 SUMO-protein ligase 41.7 13 0.00045 36.3 2.7 49 126-177 216-268 (360)
167 1afo_A Glycophorin A; integral 41.3 57 0.0019 21.7 4.8 20 44-63 14-33 (40)
168 1iij_A ERBB-2 receptor protein 40.9 13 0.00046 24.2 1.8 13 56-68 22-34 (35)
169 2jmi_A Protein YNG1, ING1 homo 40.4 11 0.00037 29.6 1.5 46 123-171 24-75 (90)
170 2zet_C Melanophilin; complex, 40.2 6 0.00021 34.0 0.0 47 124-172 67-117 (153)
171 1zfo_A LAsp-1; LIM domain, zin 38.9 18 0.00063 22.3 2.2 28 126-156 4-31 (31)
172 1x62_A C-terminal LIM domain p 38.4 23 0.00078 26.0 3.1 39 125-175 15-53 (79)
173 3f6q_B LIM and senescent cell 38.1 16 0.00056 25.7 2.1 42 125-176 11-52 (72)
174 2knc_B Integrin beta-3; transm 37.3 46 0.0016 25.3 4.6 15 50-64 21-35 (79)
175 2l9u_A Receptor tyrosine-prote 36.8 46 0.0016 21.7 3.8 22 41-62 10-31 (40)
176 1x68_A FHL5 protein; four-and- 36.6 19 0.00065 26.2 2.3 39 126-174 6-46 (76)
177 2cor_A Pinch protein; LIM doma 36.4 32 0.0011 25.3 3.6 39 125-175 15-53 (79)
178 1afo_A Glycophorin A; integral 35.9 40 0.0014 22.4 3.5 29 38-66 11-39 (40)
179 1x64_A Alpha-actinin-2 associa 35.3 25 0.00084 26.4 2.9 39 125-175 25-63 (89)
180 2d8y_A Eplin protein; LIM doma 35.2 24 0.00081 26.6 2.8 40 125-175 15-54 (91)
181 2l2t_A Receptor tyrosine-prote 35.2 33 0.0011 23.4 3.1 22 47-68 20-41 (44)
182 3o7a_A PHD finger protein 13 v 34.2 12 0.0004 25.9 0.7 41 130-171 8-51 (52)
183 2ehe_A Four and A half LIM dom 34.1 29 0.00099 25.4 3.1 39 126-174 16-54 (82)
184 2a20_A Regulating synaptic mem 33.9 10 0.00036 27.6 0.4 48 123-171 7-59 (62)
185 2wwb_C SEC61BETA, protein tran 33.9 28 0.00097 27.6 3.0 31 29-61 61-91 (96)
186 1nyp_A Pinch protein; LIM doma 33.8 22 0.00076 24.9 2.2 38 126-175 6-43 (66)
187 1wig_A KIAA1808 protein; LIM d 33.6 29 0.001 25.1 3.0 37 126-174 6-42 (73)
188 1rh5_C Secbeta; protein transl 33.6 34 0.0012 24.2 3.1 29 25-54 18-46 (53)
189 1x6a_A LIMK-2, LIM domain kina 32.0 34 0.0012 25.0 3.1 37 126-174 16-52 (81)
190 2d8x_A Protein pinch; LIM doma 30.6 36 0.0012 24.0 3.0 39 125-175 5-43 (70)
191 1wd2_A Ariadne-1 protein homol 30.3 32 0.0011 24.6 2.6 36 126-161 7-46 (60)
192 2d8z_A Four and A half LIM dom 30.1 46 0.0016 23.4 3.5 37 126-174 6-42 (70)
193 2l4z_A DNA endonuclease RBBP8, 30.1 21 0.00073 28.9 1.8 39 125-174 61-99 (123)
194 1a7i_A QCRP2 (LIM1); LIM domai 30.0 15 0.00053 27.0 0.8 39 126-175 8-46 (81)
195 2ks1_B Epidermal growth factor 29.7 55 0.0019 22.2 3.5 19 47-65 21-39 (44)
196 2gmg_A Hypothetical protein PF 29.5 21 0.0007 28.9 1.5 25 146-175 72-96 (105)
197 3kv5_D JMJC domain-containing 29.1 12 0.00041 37.9 0.1 47 125-172 37-88 (488)
198 2dar_A PDZ and LIM domain prot 29.0 25 0.00084 26.5 1.9 39 125-175 25-63 (90)
199 3kqi_A GRC5, PHD finger protei 27.8 19 0.00065 26.7 1.0 45 127-172 12-61 (75)
200 2jwa_A Receptor tyrosine-prote 27.8 46 0.0016 22.7 2.8 7 57-63 31-37 (44)
201 2pv0_B DNA (cytosine-5)-methyl 27.3 33 0.0011 33.8 2.8 44 124-171 92-147 (386)
202 1pi7_A VPU protein, U ORF prot 27.2 1.1E+02 0.0036 20.0 4.4 11 47-57 11-21 (36)
203 2egq_A FHL1 protein; LIM domai 26.9 32 0.0011 24.7 2.2 40 126-175 16-58 (77)
204 3j1r_A Archaeal adhesion filam 26.5 1.1E+02 0.0038 18.4 4.1 10 37-46 2-11 (26)
205 2jny_A Uncharacterized BCR; st 26.4 22 0.00077 26.3 1.2 20 156-175 3-22 (67)
206 3a1b_A DNA (cytosine-5)-methyl 26.3 32 0.0011 29.8 2.3 43 124-170 78-132 (159)
207 2d8v_A Zinc finger FYVE domain 26.1 35 0.0012 25.3 2.1 31 123-158 6-37 (67)
208 2pk7_A Uncharacterized protein 26.1 22 0.00074 26.5 1.0 20 156-175 1-20 (69)
209 2k9j_B Integrin beta-3; transm 25.4 1.4E+02 0.0047 20.0 4.9 22 45-66 15-36 (43)
210 2zxe_G FXYD10, phospholemman-l 25.3 28 0.00095 26.4 1.5 26 40-65 19-44 (74)
211 4bbq_A Lysine-specific demethy 25.2 13 0.00046 29.6 -0.3 45 127-171 61-113 (117)
212 2cuq_A Four and A half LIM dom 24.6 46 0.0016 24.1 2.6 37 126-174 16-52 (80)
213 2cup_A Skeletal muscle LIM-pro 24.4 60 0.0021 24.5 3.4 39 126-174 6-44 (101)
214 1v6g_A Actin binding LIM prote 24.4 37 0.0013 24.8 2.1 38 126-175 16-53 (81)
215 2fiy_A Protein FDHE homolog; F 24.0 16 0.00056 34.8 0.0 48 123-171 180-230 (309)
216 1x4i_A Inhibitor of growth pro 22.9 31 0.0011 25.4 1.4 47 124-173 5-56 (70)
217 2knc_B Integrin beta-3; transm 22.9 1.2E+02 0.004 23.0 4.7 31 37-67 11-42 (79)
218 2kpi_A Uncharacterized protein 22.7 20 0.0007 25.4 0.3 20 156-175 3-22 (56)
219 1rut_X Flinc4, fusion protein 22.2 36 0.0012 29.3 1.9 37 127-173 71-107 (188)
220 2jr6_A UPF0434 protein NMA0874 21.8 22 0.00077 26.3 0.4 19 157-175 2-20 (68)
221 2o35_A Hypothetical protein DU 21.6 28 0.00094 28.0 0.9 13 150-162 42-54 (105)
222 2cur_A Skeletal muscle LIM-pro 21.6 54 0.0018 23.0 2.4 37 126-174 6-42 (69)
223 3fyb_A Protein of unknown func 21.5 28 0.00095 27.9 0.9 12 150-161 41-52 (104)
224 2k21_A Potassium voltage-gated 21.2 1.5E+02 0.0053 24.7 5.4 28 39-66 53-80 (138)
225 2iyb_E Testin, TESS, TES; LIM 21.2 47 0.0016 23.2 2.0 39 126-174 3-43 (65)
226 2jne_A Hypothetical protein YF 20.9 14 0.00048 29.6 -1.0 41 126-175 33-73 (101)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=126.01 Aligned_cols=76 Identities=34% Similarity=0.706 Sum_probs=66.4
Q ss_pred cCCCCCHHHHhcCCcchhhhhcC-CCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 99 HDSGLDQAFIDALPVFLYREIMG-LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 99 ~~~gl~~~~i~~Lp~~~~~~~~~-~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
...+++++.|+.||.+.+..... ..+...|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||+.+..
T Consensus 13 ~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 13 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 35789999999999998876543 345678999999999999899999 99999999999999999999999998754
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-16 Score=121.21 Aligned_cols=68 Identities=38% Similarity=0.893 Sum_probs=60.0
Q ss_pred HHhcCCcchhhhhcCCCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 107 FIDALPVFLYREIMGLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 107 ~i~~Lp~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
.++.||.+++.......+...|+||+++|..++.++.++ |+|+||..||..|+..+.+||+||+.+..
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 457789888877666667789999999999988889998 99999999999999999999999988754
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.50 E-value=1.3e-14 Score=104.48 Aligned_cols=52 Identities=48% Similarity=1.117 Sum_probs=46.7
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
++..+|+||++.|..++.+..++.|+|.||..||..|+..+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3557899999999998888888779999999999999999999999998764
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=3.8e-14 Score=109.23 Aligned_cols=55 Identities=35% Similarity=0.857 Sum_probs=49.1
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccCCC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHGL 178 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~ 178 (360)
.+..+|+||++.|...+.++.++ |+|+||..||..|+..+.+||+||+.+....+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 44678999999999888888888 99999999999999999999999998877553
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.2e-14 Score=108.60 Aligned_cols=54 Identities=41% Similarity=0.842 Sum_probs=48.3
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
..+...|+||++.|.....+++++ |+|.||..||..|+..+.+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 345678999999999988888888 999999999999999999999999988653
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=7.3e-14 Score=105.18 Aligned_cols=53 Identities=38% Similarity=0.973 Sum_probs=47.6
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
.+...|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||+.+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 44578999999998888888898 999999999999999999999999988654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=7e-14 Score=109.49 Aligned_cols=53 Identities=30% Similarity=0.782 Sum_probs=43.1
Q ss_pred CCCccccccCcccc-----------CccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 124 EPFDCAVCLCEFSE-----------QDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 124 ~~~~C~ICle~f~~-----------~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
+...|+||+++|.. ++.++.++.|+|+||..||+.||..+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 34578888888854 444666666999999999999999999999999987654
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.37 E-value=4.4e-13 Score=110.44 Aligned_cols=52 Identities=29% Similarity=0.568 Sum_probs=41.7
Q ss_pred CCCccccccCccccCc---------------cccccCCCCCccchhhhhhhh-----hcCCCCCccccccccC
Q 038999 124 EPFDCAVCLCEFSEQD---------------KLRLLPMCSHAFHIDCIDTWL-----LSNSTCPLCRGNLYIH 176 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~---------------~~~~lp~C~H~FH~~CI~~Wl-----~~~~tCP~CR~~l~~~ 176 (360)
...+|+||++.|.... .+++++ |+|+||..||..|| ..+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3468999999997643 333676 99999999999999 4567899999987654
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.34 E-value=4.5e-13 Score=96.17 Aligned_cols=50 Identities=30% Similarity=0.733 Sum_probs=42.7
Q ss_pred CCCccccccCccccCc-cccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 124 EPFDCAVCLCEFSEQD-KLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~-~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
+..+|+||++.|..++ .+..++ |+|.||..||..|+..+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4568999999996543 466677 9999999999999999999999998763
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.31 E-value=5.4e-13 Score=100.53 Aligned_cols=54 Identities=26% Similarity=0.621 Sum_probs=45.4
Q ss_pred CCCCccccccCccccC----ccccccCCCCCccchhhhhhhhhcCCCCCccccccccCC
Q 038999 123 KEPFDCAVCLCEFSEQ----DKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHG 177 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (360)
.+..+|+||++.|... +.+..++ |+|.||..||..|+..+.+||+||+.+....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 4567899999998763 3446676 9999999999999999999999999887554
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.30 E-value=8.7e-13 Score=108.94 Aligned_cols=51 Identities=29% Similarity=0.638 Sum_probs=42.6
Q ss_pred CCCccccccCccccCc---------------cccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 124 EPFDCAVCLCEFSEQD---------------KLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~---------------~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
+...|+||++.|...- .++.++ |+|.||..||..||..+.+||+||+.+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 4578999999998541 245566 99999999999999999999999998643
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=7.6e-13 Score=98.87 Aligned_cols=51 Identities=27% Similarity=0.675 Sum_probs=43.2
Q ss_pred CCCCccccccCccccC----ccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 123 KEPFDCAVCLCEFSEQ----DKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
.+...|+||++.|... ..+.+++ |+|.||..||..|+..+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4567899999999864 2336677 9999999999999999999999998774
No 13
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=8.3e-13 Score=99.59 Aligned_cols=52 Identities=31% Similarity=0.810 Sum_probs=44.6
Q ss_pred CCCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccCC
Q 038999 121 GLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHG 177 (360)
Q Consensus 121 ~~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (360)
...+...|+||++.+.. ..++ |+|.||..||..|+..+.+||+||+.+....
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 34556799999999876 5677 9999999999999999999999999887543
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.27 E-value=8.7e-13 Score=97.12 Aligned_cols=52 Identities=27% Similarity=0.640 Sum_probs=43.9
Q ss_pred CCCccccccCccccC----ccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 124 EPFDCAVCLCEFSEQ----DKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 124 ~~~~C~ICle~f~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
+..+|+||++.|... +.+..++ |+|.||..||..|+..+.+||+||+.+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 356899999999763 3446677 999999999999999999999999988654
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.2e-12 Score=100.06 Aligned_cols=55 Identities=31% Similarity=0.768 Sum_probs=46.2
Q ss_pred CCCCCccccccCccccCcc-ccccCCCCCccchhhhhhhhhcC---CCCCccccccccCC
Q 038999 122 LKEPFDCAVCLCEFSEQDK-LRLLPMCSHAFHIDCIDTWLLSN---STCPLCRGNLYIHG 177 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~-~~~lp~C~H~FH~~CI~~Wl~~~---~tCP~CR~~l~~~~ 177 (360)
..+...|+||++.|...+. .+.++ |+|.||..||..|+..+ .+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 3456789999999987664 66777 99999999999999876 78999999876654
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=3.9e-12 Score=96.50 Aligned_cols=50 Identities=28% Similarity=0.551 Sum_probs=43.2
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
.+...|+||++.|.. ...++ |+|.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 345789999999866 45677 999999999999999999999999988654
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=6.8e-12 Score=95.37 Aligned_cols=53 Identities=21% Similarity=0.452 Sum_probs=43.7
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccCC
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHG 177 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (360)
..+...|+||++.|.. .+.+++ |+|.||..||..|+..+.+||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3456789999999876 233346 9999999999999999999999999887654
No 18
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=5.9e-12 Score=98.87 Aligned_cols=52 Identities=29% Similarity=0.800 Sum_probs=43.6
Q ss_pred CCCCccccccCccccCccccccCCCC-----CccchhhhhhhhhcC--CCCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCS-----HAFHIDCIDTWLLSN--STCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~~--~tCP~CR~~l~~~ 176 (360)
.+...|.||+++|..++.+ ++| |+ |.||..||+.||..+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3456899999999877766 588 96 999999999999875 4899999988654
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.20 E-value=6.5e-12 Score=93.98 Aligned_cols=49 Identities=39% Similarity=0.785 Sum_probs=42.0
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
+...|+||++.+.. ....++ |+|.||..||..|+..+.+||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 35689999999865 346677 99999999999999999999999998753
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.18 E-value=2.2e-12 Score=108.46 Aligned_cols=51 Identities=29% Similarity=0.677 Sum_probs=0.9
Q ss_pred CCCccccccCccccC-------------c--cccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 124 EPFDCAVCLCEFSEQ-------------D--KLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 124 ~~~~C~ICle~f~~~-------------~--~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
+...|+||++.|... + .+..++ |+|.||..||..||..+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 456899999999752 2 222245 99999999999999999999999998643
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=93.84 Aligned_cols=51 Identities=27% Similarity=0.638 Sum_probs=41.7
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcC--CCCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN--STCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~~~ 176 (360)
.+...|+||++.|.. ...++.|+|.||..||..|+..+ .+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 445789999999986 34465599999999999999865 6899999976544
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.9e-11 Score=92.57 Aligned_cols=51 Identities=27% Similarity=0.610 Sum_probs=42.2
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhh---cCCCCCccccccccC
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL---SNSTCPLCRGNLYIH 176 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~~l~~~ 176 (360)
..+...|+||++.|.. ...++ |+|.||..||..|+. .+.+||+||+.+...
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 4456799999999885 45567 999999999999997 456899999987654
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2e-11 Score=91.14 Aligned_cols=51 Identities=20% Similarity=0.585 Sum_probs=41.8
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhh-cCCCCCccccccccC
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL-SNSTCPLCRGNLYIH 176 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~ 176 (360)
..+...|+||++.+.. ...++ |||.||..||..|+. .+.+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS---PKQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESS---CCCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcC---eeECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3456789999999876 33466 999999999999994 567899999987654
No 24
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=2.9e-11 Score=93.71 Aligned_cols=49 Identities=20% Similarity=0.532 Sum_probs=41.9
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcC--CCCCcccccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN--STCPLCRGNLYI 175 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~~ 175 (360)
...+|+||++.|..++... .|+|.||..||..||+.+ .+||+||+.+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3568999999999876554 499999999999999987 789999987654
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2e-11 Score=94.74 Aligned_cols=48 Identities=23% Similarity=0.535 Sum_probs=41.8
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
.+...|+||++.|.. ..+++ |+|.||..||..|+....+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 445789999999976 44577 9999999999999999999999999875
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.11 E-value=1.9e-11 Score=104.51 Aligned_cols=47 Identities=32% Similarity=0.832 Sum_probs=41.5
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
...|+||++.|.. ...++ |||.||..||..|+..+.+||+||+++..
T Consensus 53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4579999999976 56677 99999999999999999999999998754
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=7.9e-11 Score=90.99 Aligned_cols=52 Identities=29% Similarity=0.636 Sum_probs=43.7
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhhc------CCCCCccccccccCC
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS------NSTCPLCRGNLYIHG 177 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR~~l~~~~ 177 (360)
..+...|+||++.|.. ...++ |+|.||..||..|+.. ...||+||..+....
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred ccCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 3456799999999876 45567 9999999999999987 788999999887644
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.11 E-value=3.1e-11 Score=92.62 Aligned_cols=52 Identities=27% Similarity=0.575 Sum_probs=43.3
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhhc-------CCCCCccccccccCC
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-------NSTCPLCRGNLYIHG 177 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-------~~tCP~CR~~l~~~~ 177 (360)
..+...|+||++.|.. ...++ |||.||..||..|+.. ..+||+||..+....
T Consensus 9 ~~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 9 VQEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 3456799999999876 45577 9999999999999987 568999999887543
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.08 E-value=7.4e-11 Score=91.16 Aligned_cols=51 Identities=31% Similarity=0.620 Sum_probs=42.8
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhhc------CCCCCccccccccC
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS------NSTCPLCRGNLYIH 176 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR~~l~~~ 176 (360)
..+...|+||++.|.. ...++ |+|.||..||..|+.. ...||+||..+...
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 3456789999999876 34677 9999999999999987 67899999988654
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.08 E-value=5.6e-11 Score=91.31 Aligned_cols=50 Identities=22% Similarity=0.492 Sum_probs=42.7
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhc-CCCCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-NSTCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~ 176 (360)
.+...|+||++.|.. ...++ |||.||..||..|+.. +.+||+||..+...
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 456799999999976 45567 9999999999999987 78899999987654
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.06 E-value=4.9e-11 Score=96.61 Aligned_cols=50 Identities=34% Similarity=0.841 Sum_probs=42.1
Q ss_pred CCCccccccCccccCccccc-cCCCCCccchhhhhhhhhcC-CCCCccccccccCC
Q 038999 124 EPFDCAVCLCEFSEQDKLRL-LPMCSHAFHIDCIDTWLLSN-STCPLCRGNLYIHG 177 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~-lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~~~ 177 (360)
+...|+||++.|.. ... ++ |||.||..||..|+..+ .+||+||.++....
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 34689999999975 444 66 99999999999999987 69999999886543
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.03 E-value=6e-11 Score=98.92 Aligned_cols=53 Identities=26% Similarity=0.632 Sum_probs=44.6
Q ss_pred CCCccccccCccccC----ccccccCCCCCccchhhhhhhhhcCCCCCccccccccCC
Q 038999 124 EPFDCAVCLCEFSEQ----DKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHG 177 (360)
Q Consensus 124 ~~~~C~ICle~f~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (360)
+...|+||++.|... +.+..++ |||.||..||..|+..+.+||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 457899999999764 3446677 9999999999999999999999999886543
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.5e-10 Score=85.49 Aligned_cols=44 Identities=32% Similarity=0.694 Sum_probs=37.1
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhh---cCCCCCcc
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL---SNSTCPLC 169 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCP~C 169 (360)
..+...|+||++.|.. ..+++ |||.||..||..|+. .+.+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4556799999999886 45567 999999999999998 45689998
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.01 E-value=1.1e-10 Score=93.76 Aligned_cols=48 Identities=25% Similarity=0.618 Sum_probs=41.2
Q ss_pred CCccccccCccccCcccccc-CCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 125 PFDCAVCLCEFSEQDKLRLL-PMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~l-p~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
...|+||++.|.. ...+ + |||.||..||..|+..+.+||+||..+...
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 4689999999986 3344 6 999999999999999999999999988653
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=1.3e-10 Score=86.42 Aligned_cols=52 Identities=19% Similarity=0.498 Sum_probs=40.9
Q ss_pred CCccccccC-ccccCccc-cccCCCCCccchhhhhhhhhc-CCCCCccccccccCC
Q 038999 125 PFDCAVCLC-EFSEQDKL-RLLPMCSHAFHIDCIDTWLLS-NSTCPLCRGNLYIHG 177 (360)
Q Consensus 125 ~~~C~ICle-~f~~~~~~-~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~~ 177 (360)
...|+||++ .|...... ..++ |||.||..||..|+.. ..+||+||+.+....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 468999999 77665443 3456 9999999999999765 467999999886544
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.3e-10 Score=82.60 Aligned_cols=44 Identities=34% Similarity=0.850 Sum_probs=36.4
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhh---cCCCCCcc
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL---SNSTCPLC 169 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCP~C 169 (360)
..+...|+||++.|.. ...++ |+|.||..||..|+. .+.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE---PVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS---CCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc---cEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999999976 35577 999999999999954 56789998
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.97 E-value=1.6e-10 Score=94.47 Aligned_cols=51 Identities=24% Similarity=0.596 Sum_probs=42.0
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
.+...|+||++.|.. .+.+++ |||.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 345689999999875 233336 999999999999999999999999987653
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.97 E-value=1.4e-10 Score=96.60 Aligned_cols=54 Identities=26% Similarity=0.621 Sum_probs=44.9
Q ss_pred CCCCccccccCccccC----ccccccCCCCCccchhhhhhhhhcCCCCCccccccccCC
Q 038999 123 KEPFDCAVCLCEFSEQ----DKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHG 177 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (360)
.+...|+||++.|... .....++ |+|.||..||+.|+..+.+||+||..+...+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 4567899999998763 2335666 9999999999999999999999999887654
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.95 E-value=2.3e-10 Score=95.75 Aligned_cols=48 Identities=29% Similarity=0.565 Sum_probs=40.7
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcCC-CCCcccccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS-TCPLCRGNLYI 175 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~ 175 (360)
+...|+||++.|.. ...++ |||.||..||..|+..+. +||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34689999999986 45567 999999999999998554 89999998865
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=4.5e-10 Score=91.68 Aligned_cols=49 Identities=27% Similarity=0.617 Sum_probs=40.5
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCC---CCCccccccccCC
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS---TCPLCRGNLYIHG 177 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~---tCP~CR~~l~~~~ 177 (360)
...|+||++.|.. ...++ |||.||..||..|+..+. +||+||..+....
T Consensus 21 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 3589999999875 34567 999999999999998754 8999999876543
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.95 E-value=2.6e-10 Score=90.28 Aligned_cols=50 Identities=28% Similarity=0.688 Sum_probs=40.8
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcC--CCCCccccccc
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN--STCPLCRGNLY 174 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~ 174 (360)
..+...|+||++.|.. ...++.|||.||..||..|+..+ .+||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3456799999999886 44565599999999999999754 58999998863
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.89 E-value=4.6e-10 Score=98.36 Aligned_cols=49 Identities=37% Similarity=0.703 Sum_probs=40.7
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhc-CCCCCcccccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-NSTCPLCRGNLYI 175 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 175 (360)
+...|+||++.|.. .+.+++ |||.||..||..|+.. +.+||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34689999999986 233346 9999999999999997 7789999998854
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.89 E-value=4.5e-10 Score=93.36 Aligned_cols=51 Identities=27% Similarity=0.630 Sum_probs=42.6
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCC-CCCccccccccC
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS-TCPLCRGNLYIH 176 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~~ 176 (360)
..+...|+||++.|.. ...++ |||.||..||..|+.... +||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 3456789999999876 35567 999999999999998765 999999987654
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.86 E-value=5.3e-10 Score=92.24 Aligned_cols=47 Identities=26% Similarity=0.669 Sum_probs=40.3
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhc-CCCCCcccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-NSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 175 (360)
...|+||++.|.. ...++ |||.||..||..|+.. +.+||+||..+..
T Consensus 15 ~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4689999999876 45567 9999999999999976 6689999998864
No 45
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=1.5e-09 Score=78.80 Aligned_cols=47 Identities=26% Similarity=0.648 Sum_probs=39.3
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
.+...|+||++.|.. .+.++ |+|.||..||..| ...||+||+.+..+
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 345789999999986 46788 9999999999885 56899999987654
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.85 E-value=9.2e-10 Score=95.79 Aligned_cols=49 Identities=24% Similarity=0.533 Sum_probs=41.5
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcCC-CCCccccccccC
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS-TCPLCRGNLYIH 176 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~~ 176 (360)
+...|+||++.|.. ...++ |+|.||..||..|+.... +||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34689999999876 44577 999999999999998764 899999988764
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.83 E-value=4.5e-09 Score=81.87 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=42.9
Q ss_pred CCCCCccccccCccccCccc-cccCCCCCccchhhhhhhhhc-CCCCCccccccccCCCC
Q 038999 122 LKEPFDCAVCLCEFSEQDKL-RLLPMCSHAFHIDCIDTWLLS-NSTCPLCRGNLYIHGLG 179 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~-~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~~~~ 179 (360)
..+..+|+||++.+...+.. .-++ |||.||..|+..|+.. ...||+||+.+....+.
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 45567999999998654332 2234 9999999999998753 56799999988765543
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.82 E-value=1.3e-09 Score=90.04 Aligned_cols=49 Identities=27% Similarity=0.516 Sum_probs=41.5
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhc-CCCCCccccccccCC
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-NSTCPLCRGNLYIHG 177 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~~ 177 (360)
...|+||++.|.. ...++ |||.||..||..|+.. ..+||+||..+....
T Consensus 23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 3689999999876 44477 9999999999999987 678999999886644
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.82 E-value=2e-09 Score=87.66 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=44.0
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
.+.+.|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+||.++...
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 456899999999987 56677 999999999999999889999999988654
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.82 E-value=1.9e-09 Score=85.05 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=43.9
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
.+.+.|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+||.++...
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 356899999999987 56677 999999999999999999999999987654
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.81 E-value=2.6e-09 Score=86.71 Aligned_cols=50 Identities=24% Similarity=0.271 Sum_probs=43.7
Q ss_pred CCCCccccccCccccCccccccCCCC-CccchhhhhhhhhcCCCCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCS-HAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~-H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
.+.+.|+||++.|.+ ..+++ || |.|+..||..||..+.+||+||.++...
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 356799999999987 55677 99 9999999999999999999999988654
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=2.5e-09 Score=88.65 Aligned_cols=46 Identities=26% Similarity=0.654 Sum_probs=39.1
Q ss_pred CCccccccCccccCcccccc-CCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 125 PFDCAVCLCEFSEQDKLRLL-PMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~l-p~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
...|+||++.|.. ...+ + |||.||..||..|+. ..||+||..+...
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred CCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 4689999999976 4555 6 999999999999987 8899999987543
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.76 E-value=2e-09 Score=80.46 Aligned_cols=47 Identities=19% Similarity=0.420 Sum_probs=39.6
Q ss_pred CCCccccccCccccCcccccc--CCCCCc-cchhhhhhhhhcCCCCCccccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLL--PMCSHA-FHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~l--p~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
+...|.||++.+.+ ..++ | |||. |+..|+..|+..+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 34589999998765 3444 8 9999 899999999998899999999874
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.75 E-value=3.2e-09 Score=105.53 Aligned_cols=49 Identities=22% Similarity=0.653 Sum_probs=42.3
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhh-cCCCCCccccccccCC
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL-SNSTCPLCRGNLYIHG 177 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~ 177 (360)
...|+||++.+.. +..+| |||.||..||..|+. .+.+||+||+.+....
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 4689999999865 66787 999999999999998 6789999999887643
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.71 E-value=2.6e-09 Score=92.10 Aligned_cols=50 Identities=20% Similarity=0.451 Sum_probs=41.5
Q ss_pred CCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCC-CCCcccccccc
Q 038999 122 LKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS-TCPLCRGNLYI 175 (360)
Q Consensus 122 ~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~ 175 (360)
..+...|+||++.|... ..++ |||.||..||..|+.... +||+||.++..
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 45567999999999873 4466 999999999999998665 89999997643
No 56
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.66 E-value=8.1e-09 Score=100.85 Aligned_cols=53 Identities=21% Similarity=0.625 Sum_probs=40.9
Q ss_pred CCCCccccccCccccCcccc----ccCCCCCccchhhhhhhhhcC-----------CCCCcccccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLR----LLPMCSHAFHIDCIDTWLLSN-----------STCPLCRGNLYI 175 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~----~lp~C~H~FH~~CI~~Wl~~~-----------~tCP~CR~~l~~ 175 (360)
....+|+||++.+..+..+. ..+.|+|.||..||..||++. .+||+||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45678999999998733222 223599999999999999752 369999998864
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.65 E-value=8.9e-09 Score=78.88 Aligned_cols=43 Identities=21% Similarity=0.616 Sum_probs=37.2
Q ss_pred CCccccccCccccCccccccCCCCCc-cchhhhhhhhhcCCCCCcccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHA-FHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
...|+||++.+.. ...+| |||. ||..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 3589999999776 66778 9999 999999999 889999998754
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.64 E-value=7.3e-09 Score=77.16 Aligned_cols=46 Identities=15% Similarity=0.455 Sum_probs=38.6
Q ss_pred CCccccccCccccCcccccc--CCCCCc-cchhhhhhhhhcCCCCCccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLL--PMCSHA-FHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~l--p~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
...|.||++.+.+ ..++ | |||. |+..|+..|...+..||+||+++.
T Consensus 7 ~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRD---GNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSC---EEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCC---eEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4589999998654 3333 8 9998 999999999988889999999874
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=1.6e-08 Score=94.12 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=42.3
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcC-CCCCccccccccCC
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN-STCPLCRGNLYIHG 177 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~~~ 177 (360)
+.+.|+||++.|.+ ..+++ |||.||..||..|+..+ .+||+||.++....
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 46889999999987 56677 99999999999999864 55999999886543
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=1.5e-08 Score=81.21 Aligned_cols=51 Identities=22% Similarity=0.444 Sum_probs=40.6
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcC------CCCCc--cccc-cccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN------STCPL--CRGN-LYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~------~tCP~--CR~~-l~~~ 176 (360)
.+.+.|+||++.|.+ ..+++.|||.|+..||..||..+ .+||+ |+.. +...
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 456789999999987 44553499999999999999864 48999 9866 5443
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.55 E-value=1.9e-08 Score=88.36 Aligned_cols=52 Identities=27% Similarity=0.604 Sum_probs=42.6
Q ss_pred CCCCCCccccccCccccCccccccCCCCCccchhhhhhhhhcC-CCCCccccccccC
Q 038999 121 GLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN-STCPLCRGNLYIH 176 (360)
Q Consensus 121 ~~~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~~ 176 (360)
...+...|+||++.|.. ...++ |||.||..||..|+... .+||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 34456799999999986 34577 99999999999999765 4999999987654
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.51 E-value=4.8e-08 Score=72.38 Aligned_cols=48 Identities=25% Similarity=0.613 Sum_probs=37.1
Q ss_pred CCCCccccccCccccCccccccCCCC--C---ccchhhhhhhhhc--CCCCCccccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCS--H---AFHIDCIDTWLLS--NSTCPLCRGNLY 174 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~--H---~FH~~CI~~Wl~~--~~tCP~CR~~l~ 174 (360)
.+...|.||+++. ++.+ ++| |. | .||..||..|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4557899999983 3333 577 65 4 9999999999974 578999998764
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=7.2e-08 Score=73.80 Aligned_cols=42 Identities=21% Similarity=0.638 Sum_probs=35.3
Q ss_pred CccccccCccccCccccccCCCCCc-cchhhhhhhhhcCCCCCcccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHA-FHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..|+||++.+.. +..+| |+|. ||..|+.. ...||+||..+..
T Consensus 26 ~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 479999999766 66678 9999 99999965 3789999998754
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.43 E-value=6.8e-08 Score=86.63 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=42.7
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcC-CCCCccccccccCC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN-STCPLCRGNLYIHG 177 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~~~ 177 (360)
.+.+.|+||++.|.+ ..+++ |||.|+..||..|+..+ .+||+||.++....
T Consensus 104 p~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 456889999999987 56677 99999999999999874 57999999886543
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.3e-07 Score=71.53 Aligned_cols=45 Identities=31% Similarity=0.692 Sum_probs=37.5
Q ss_pred CCCCccccccCccccCccccccCCCCCc-cchhhhhhhhhcCCCCCcccccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHA-FHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
.+...|.||++.+.. +.++| |+|. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 345789999998665 77788 9999 99999984 4789999998765
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.42 E-value=7.5e-08 Score=76.67 Aligned_cols=48 Identities=21% Similarity=0.576 Sum_probs=39.7
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhc--------CCCCCc--cccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS--------NSTCPL--CRGN 172 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~tCP~--CR~~ 172 (360)
+..+|+||+++|...+.+.+.+ |+|.||..||..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4578999999998766666666 9999999999999864 236999 9987
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.34 E-value=1.6e-07 Score=73.08 Aligned_cols=43 Identities=28% Similarity=0.634 Sum_probs=36.8
Q ss_pred CccccccCccccCccccccCCCCCc-cchhhhhhhhhcCCCCCccccccccC
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHA-FHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
..|.||++.+.. +..+| |||. ||..|+..| ..||+||..+...
T Consensus 19 ~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 19 MLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp TBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 489999998765 67788 9999 999999988 4999999988653
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.26 E-value=2.5e-07 Score=68.62 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=42.3
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccCCC
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIHGL 178 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~ 178 (360)
+.|+||++.|.+ ..+++.|||+|...||..||..+.+||+++.++...++
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 679999999986 35552399999999999999998899999998876543
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.24 E-value=3.5e-07 Score=89.78 Aligned_cols=45 Identities=29% Similarity=0.747 Sum_probs=38.6
Q ss_pred CCCCccccccCccccCccccccCCCCCc-cchhhhhhhhhcCCCCCcccccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHA-FHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
.+...|+||++.+.. +..+| |||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 345789999999876 66778 9999 999999998 789999998754
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.11 E-value=8.4e-07 Score=83.84 Aligned_cols=52 Identities=23% Similarity=0.505 Sum_probs=41.2
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcC--CCCCc--cccccccCC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN--STCPL--CRGNLYIHG 177 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~--CR~~l~~~~ 177 (360)
.....|+||++.|.. .++.+. |||.|+..||..|+..+ .+||+ ||+.+....
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred ceeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 346789999999976 233345 99999999999999864 46999 999776544
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.83 E-value=1.2e-05 Score=74.88 Aligned_cols=50 Identities=20% Similarity=0.529 Sum_probs=40.6
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcCC--CCCccccccccC
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS--TCPLCRGNLYIH 176 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCP~CR~~l~~~ 176 (360)
....|.||.+....+..+. +|+|.||..|+..|++.+. .||.|+..+...
T Consensus 179 ~i~~C~iC~~iv~~g~~C~---~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS---SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcccC---ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3568999999988764443 4999999999999998754 899998876443
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.82 E-value=7.4e-06 Score=66.51 Aligned_cols=46 Identities=26% Similarity=0.527 Sum_probs=37.6
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhc-CCCCCcccccccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-NSTCPLCRGNLYI 175 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 175 (360)
.|.+|--.+.. ..|+.| |+|+||.+|+..|.++ .++||+|+.++..
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47888665544 678898 9999999999999854 6889999998754
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.04 E-value=0.022 Score=45.56 Aligned_cols=49 Identities=27% Similarity=0.597 Sum_probs=39.2
Q ss_pred CCCCccccccCccccCccccccCCC-CCccchhhhhhhhhcCCCCCccccccccCC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMC-SHAFHIDCIDTWLLSNSTCPLCRGNLYIHG 177 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C-~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (360)
.....|-.|+-++.. + +. | .|.+|..|+..-|.....||+|..+|...-
T Consensus 26 ~G~~nCKsCWf~~k~---L--V~-C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG---L--VE-CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCSS---E--EE-CSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cCcccChhhccccCC---e--ee-ecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 345689999988554 3 23 5 599999999999888889999999987653
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.07 E-value=0.037 Score=41.35 Aligned_cols=45 Identities=29% Similarity=0.484 Sum_probs=33.2
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcCC----CCCccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS----TCPLCRGN 172 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~ 172 (360)
....|.||.+. ++ +..-..|...||..|+++.|.... .||.|...
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 44679999864 44 444445999999999999886543 59999653
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.25 E-value=0.059 Score=42.53 Aligned_cols=33 Identities=12% Similarity=0.401 Sum_probs=25.5
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhh
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDT 158 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~ 158 (360)
...|.||++.+........+. |+|.|+..|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHH
Confidence 357999998754444444476 999999999998
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.35 E-value=0.15 Score=37.25 Aligned_cols=49 Identities=18% Similarity=0.444 Sum_probs=34.4
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhh-----cCCCCCcccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL-----SNSTCPLCRG 171 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~ 171 (360)
.+...|+||...+..+...+....|..-||..|+..-.. ..-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 345679999998865444444445998999999875432 3456999965
No 77
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=89.01 E-value=0.29 Score=35.64 Aligned_cols=45 Identities=27% Similarity=0.506 Sum_probs=31.4
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcC----CCCCccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN----STCPLCRGN 172 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~ 172 (360)
+...|.||.+. ++ +..-..|...||..|+.+-|... -.||.|+..
T Consensus 8 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 35679999863 33 34444599999999999765442 249999754
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.59 E-value=0.3 Score=35.54 Aligned_cols=45 Identities=27% Similarity=0.621 Sum_probs=31.8
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcC----CCCCcccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN----STCPLCRG 171 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~ 171 (360)
.+...|.||.+. ++ +..-..|...||..|+..-+... -.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 345689999874 33 33444599999999999865432 25999965
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=88.33 E-value=0.4 Score=37.61 Aligned_cols=34 Identities=21% Similarity=0.537 Sum_probs=23.6
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhh
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTW 159 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~W 159 (360)
.+..|.||- .|..++....- .|+-+||..|+.+-
T Consensus 14 ~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence 456899995 34444433333 49999999999985
No 80
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=87.82 E-value=0.24 Score=43.59 Aligned_cols=44 Identities=30% Similarity=0.519 Sum_probs=32.2
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcC----CCCCccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN----STCPLCRGN 172 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~ 172 (360)
...|.||.+. ++ +.....|...||..|+.+-|... -.||.|+..
T Consensus 4 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 4 EDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp CSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 4579999865 44 44445599999999998877643 249999753
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=86.84 E-value=0.24 Score=44.44 Aligned_cols=45 Identities=36% Similarity=0.575 Sum_probs=32.8
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcC----CCCCccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN----STCPLCRGN 172 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~ 172 (360)
+...|.+|... ++ +.....|...||..|+.+-|... -.||.|+..
T Consensus 6 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 34679999864 33 44555699999999998877543 259999753
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.68 E-value=0.39 Score=33.32 Aligned_cols=44 Identities=30% Similarity=0.657 Sum_probs=29.5
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhcC----CCCCcccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN----STCPLCRG 171 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~ 171 (360)
.|.||...-..++.+ .-..|...||..|+++=|... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll-~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLI-LCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCE-ECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEE-ECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998764333333 444599999999998655432 24999964
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.13 E-value=0.25 Score=35.20 Aligned_cols=44 Identities=32% Similarity=0.704 Sum_probs=30.7
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcCC----CCCcccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS----TCPLCRG 171 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~ 171 (360)
+...|.||... ++.+ .-..|...||..|+.+-|.... .||.|+.
T Consensus 8 ~~~~C~vC~~~---g~ll-~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCE-ECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEE-EcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45679999875 3334 3445999999999997654322 4888854
No 84
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=85.01 E-value=0.43 Score=42.44 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=34.1
Q ss_pred CccccccCccccCcc---ccccCCCCCccchhhhhhhh------h-----cCCCCCccccc
Q 038999 126 FDCAVCLCEFSEQDK---LRLLPMCSHAFHIDCIDTWL------L-----SNSTCPLCRGN 172 (360)
Q Consensus 126 ~~C~ICle~f~~~~~---~~~lp~C~H~FH~~CI~~Wl------~-----~~~tCP~CR~~ 172 (360)
..|+||...|..++. .+....|..-||..|+.--- . ..-.||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 469999999988763 44444699999999985421 1 15689999763
No 85
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=84.01 E-value=0.32 Score=35.91 Aligned_cols=45 Identities=31% Similarity=0.553 Sum_probs=31.7
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcC----CCCCcccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN----STCPLCRG 171 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~ 171 (360)
.+...|.||.+. ++ +.....|...||..|+.+-|... -.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 345689999864 33 34444599999999999765432 24999965
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=82.90 E-value=0.36 Score=36.28 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=34.4
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhc----CCCCCccccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS----NSTCPLCRGNLY 174 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~~l~ 174 (360)
+...|.||..... ++..+....|..-||..|+..-+.. .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3456999987753 3334444569999999999876543 335999976553
No 87
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.72 E-value=0.63 Score=37.77 Aligned_cols=45 Identities=27% Similarity=0.638 Sum_probs=30.6
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhcC----CCCCcccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN----STCPLCRG 171 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~ 171 (360)
.|.||.+.-..++.+..-..|...||..|+++-|... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5888876533333444445699999999998766542 25999974
No 88
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=82.47 E-value=0.68 Score=41.11 Aligned_cols=43 Identities=30% Similarity=0.529 Sum_probs=30.6
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcC----CCCCccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN----STCPLCRGN 172 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~ 172 (360)
..|.+|.+. ++.+. ...|...||..|+.+=+... -.||.|+..
T Consensus 3 ~~C~~C~~~---g~ll~-Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP---GDLVM-CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC---SSCCC-CTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC---CceeE-CCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 479999865 44444 44599999999998755432 249999754
No 89
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.73 E-value=0.32 Score=38.39 Aligned_cols=48 Identities=27% Similarity=0.521 Sum_probs=32.8
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhcCC----CCCccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS----TCPLCRGN 172 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~ 172 (360)
+...|.||...-..+ .+.....|...||..|+.+=|.... .||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 345799998874332 3444446999999999986554322 49999764
No 90
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.62 E-value=0.82 Score=36.82 Aligned_cols=46 Identities=26% Similarity=0.551 Sum_probs=30.4
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhc----CCCCCccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS----NSTCPLCR 170 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR 170 (360)
+...|.||.+.-...+.+.- ..|...||..|+...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C-~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFC-TTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEEC-SSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeEC-CCCCCCcChHHhCCccccccccCccCCcCC
Confidence 45689999887332222433 459999999999987753 22366664
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=81.31 E-value=0.41 Score=34.53 Aligned_cols=47 Identities=30% Similarity=0.640 Sum_probs=32.8
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcC----CCCCcccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN----STCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~l~~ 175 (360)
...|.||... ++.+ .-..|...||..|+.+=|... -.||.|+.....
T Consensus 5 ~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 5 EDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CSSCTTTCCC---SSCE-ECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCcCCCCC---CcEE-EcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 4579999874 4434 344599999999999765432 249999765543
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=81.07 E-value=1.7 Score=34.21 Aligned_cols=45 Identities=29% Similarity=0.596 Sum_probs=32.1
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhhcCC----CCCcccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS----TCPLCRG 171 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~ 171 (360)
.+...|.||... ++.+ ....|.-.||..|+.+=|..-. .||.|+.
T Consensus 23 ~n~~~C~vC~~~---g~LL-~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSCCSSSCSS---SCCE-ECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCcCcCcCCC---CCEE-ECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 345689999975 4433 4445889999999988665422 4999975
No 93
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=77.76 E-value=1.2 Score=35.30 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=30.5
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhc---CCCCCcccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS---NSTCPLCRG 171 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~ 171 (360)
...| ||......+..+.. ..|.-.||..|+..=+.. .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~C-d~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICC-DKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEB-TTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEc-CCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3567 88777655544444 459999999999764332 235999963
No 94
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.74 E-value=0.75 Score=35.16 Aligned_cols=44 Identities=30% Similarity=0.578 Sum_probs=28.9
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhc-----CCCCCcccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-----NSTCPLCRG 171 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~ 171 (360)
.|.||...-..+ .+..-..|...||..|+++=|.. .=.||.|+.
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678887643233 34444469999999999965543 124998864
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=77.10 E-value=0.93 Score=35.45 Aligned_cols=52 Identities=19% Similarity=0.420 Sum_probs=34.2
Q ss_pred CCCCccccccCcc-ccCccccccCCCCCccchhhhhhhhhc--CCCCCccccccc
Q 038999 123 KEPFDCAVCLCEF-SEQDKLRLLPMCSHAFHIDCIDTWLLS--NSTCPLCRGNLY 174 (360)
Q Consensus 123 ~~~~~C~ICle~f-~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~ 174 (360)
.+...|.||...- ...+.+.....|.-.||..|+..-+.- .-.||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 3456899999763 223345555569999999999864321 224999976543
No 96
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=76.36 E-value=0.95 Score=34.64 Aligned_cols=44 Identities=39% Similarity=0.673 Sum_probs=27.6
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhcC-----CCCCcccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN-----STCPLCRG 171 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-----~tCP~CR~ 171 (360)
.|.||...-.. +.+..-..|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666554332 2333444588999999999766432 25999975
No 97
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.23 E-value=2.3 Score=33.59 Aligned_cols=45 Identities=29% Similarity=0.598 Sum_probs=28.6
Q ss_pred CCCCccccccCccccCccccccCC--CC-Cccchhhhhhhhhc----CCCCCccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPM--CS-HAFHIDCIDTWLLS----NSTCPLCRGN 172 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~~ 172 (360)
.+...| ||..... ++ .+...+ |. .-||..|+. |.. +-.||.|+..
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 445668 9988643 33 334445 55 579999997 332 3359999753
No 98
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=76.08 E-value=0.56 Score=37.91 Aligned_cols=47 Identities=23% Similarity=0.541 Sum_probs=33.2
Q ss_pred CccccccCccccCccccccC-CCCCccchhhhhhhhh----------cCCCCCccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLP-MCSHAFHIDCIDTWLL----------SNSTCPLCRGN 172 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp-~C~H~FH~~CI~~Wl~----------~~~tCP~CR~~ 172 (360)
..|.||...+..+...+... .|..-||..|+.---. ..-.||.|+..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 57999999986655544443 5888899999854320 23469999764
No 99
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=76.07 E-value=0.92 Score=33.93 Aligned_cols=44 Identities=39% Similarity=0.696 Sum_probs=27.7
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhc-----CCCCCcccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-----NSTCPLCRG 171 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~ 171 (360)
.|.||...-.. ..+..-..|...||..|+++=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45677654222 234444458899999999965543 225999864
No 100
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=74.91 E-value=1.5 Score=48.11 Aligned_cols=51 Identities=25% Similarity=0.299 Sum_probs=43.2
Q ss_pred CCCCccccccCccccCccccccCCCC-CccchhhhhhhhhcCCCCCccccccccCC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCS-HAFHIDCIDTWLLSNSTCPLCRGNLYIHG 177 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~-H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (360)
-+.+.|+|-++.|.+ ..++| .| +.|-..+|..||..+.+||+=|.++....
T Consensus 889 P~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred cHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 346789999999987 56677 76 68999999999999999999999886543
No 101
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=74.11 E-value=1.3 Score=33.35 Aligned_cols=49 Identities=20% Similarity=0.469 Sum_probs=32.7
Q ss_pred CCCCccccccCcc-ccCccccccCCCCCccchhhhhhhhhc--CCCCCcccc
Q 038999 123 KEPFDCAVCLCEF-SEQDKLRLLPMCSHAFHIDCIDTWLLS--NSTCPLCRG 171 (360)
Q Consensus 123 ~~~~~C~ICle~f-~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~ 171 (360)
.+...|.||.+.- ..++.+.....|.-.||..|+..-..- .=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3456899998763 233445555569999999999864321 224888865
No 102
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.82 E-value=1.9 Score=32.70 Aligned_cols=47 Identities=21% Similarity=0.471 Sum_probs=31.1
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhh-----cCCCCCccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL-----SNSTCPLCRGN 172 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~ 172 (360)
...| ||...+..+...+....|..-||..|+.--.. ..-.||.|+..
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 4457 99888753443444445988999999864321 24569999764
No 103
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.63 E-value=1.3 Score=34.49 Aligned_cols=50 Identities=20% Similarity=0.416 Sum_probs=34.9
Q ss_pred CCccccccCcccc-CccccccCCCCCccchhhhhhhhhc--------CCCCCccccccc
Q 038999 125 PFDCAVCLCEFSE-QDKLRLLPMCSHAFHIDCIDTWLLS--------NSTCPLCRGNLY 174 (360)
Q Consensus 125 ~~~C~ICle~f~~-~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~tCP~CR~~l~ 174 (360)
...|.||...-.. +..+.+...|...||..|+.+=|.. .-.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 3579999976432 2345555569999999999986642 235999976554
No 104
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=72.58 E-value=1.5 Score=31.92 Aligned_cols=43 Identities=28% Similarity=0.522 Sum_probs=30.3
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLC 169 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~C 169 (360)
..|--|+..|.... ...-++|++.|+.+|=.---..-.+||.|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999986432 23456799999999954433344679988
No 105
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=71.02 E-value=2.3 Score=29.69 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=29.7
Q ss_pred ccccccCccccCccccccC-CCCCccchhhhhhhh----hcCCCCCccc
Q 038999 127 DCAVCLCEFSEQDKLRLLP-MCSHAFHIDCIDTWL----LSNSTCPLCR 170 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp-~C~H~FH~~CI~~Wl----~~~~tCP~CR 170 (360)
.|.||...+..+...+.-. .|..-||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4788888876555444444 488889999986432 2456799885
No 106
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=70.90 E-value=0.91 Score=39.26 Aligned_cols=48 Identities=19% Similarity=0.450 Sum_probs=32.4
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhh-----cCCCCCccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL-----SNSTCPLCRGN 172 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~ 172 (360)
+...| ||......+........|..-||..|+..-.. ..-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 44679 99987654444444446999999999964221 24469999763
No 107
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=70.66 E-value=2 Score=31.19 Aligned_cols=50 Identities=22% Similarity=0.460 Sum_probs=33.8
Q ss_pred CCCCccccccCcccc-CccccccCCCCCccchhhhhhhhhc-------CCCCCccccc
Q 038999 123 KEPFDCAVCLCEFSE-QDKLRLLPMCSHAFHIDCIDTWLLS-------NSTCPLCRGN 172 (360)
Q Consensus 123 ~~~~~C~ICle~f~~-~~~~~~lp~C~H~FH~~CI~~Wl~~-------~~tCP~CR~~ 172 (360)
.+...|.||...... +..+.+-..|.-.||..|+.+=|.. .-.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 345689999987532 2344445569999999999875432 2359999653
No 108
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=70.00 E-value=12 Score=25.60 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=4.8
Q ss_pred HHHHHHHHhcC
Q 038999 59 LLIRFVIRRRS 69 (360)
Q Consensus 59 llvr~l~Rrr~ 69 (360)
+.+-++.|||+
T Consensus 29 l~~~~~~RRR~ 39 (44)
T 2jwa_A 29 VVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHhheehhh
Confidence 33344444443
No 109
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=69.63 E-value=3.7 Score=30.73 Aligned_cols=45 Identities=29% Similarity=0.598 Sum_probs=28.4
Q ss_pred CCCCccccccCccccCccccccCC--CC-Cccchhhhhhhhhc----CCCCCccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPM--CS-HAFHIDCIDTWLLS----NSTCPLCRGN 172 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~~ 172 (360)
.+...| ||..... ++ .+.... |. .-||..|+. |.. +-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 345568 8987642 33 444445 55 689999997 333 2359999653
No 110
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=66.78 E-value=4.5 Score=34.50 Aligned_cols=44 Identities=23% Similarity=0.405 Sum_probs=31.6
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhh-----------cCCCCCcccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL-----------SNSTCPLCRG 171 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~-----------~~~tCP~CR~ 171 (360)
.+..|.||.+. ++.+ ....|..+||..||++=|. ..=.||+|+.
T Consensus 62 ~~d~C~vC~~G---G~Ll-cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLI-CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEE-ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---CcEE-eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45789999875 4434 4445999999999997653 1225999974
No 111
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=66.73 E-value=16 Score=26.06 Aligned_cols=27 Identities=7% Similarity=0.245 Sum_probs=16.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 37 SPAILFIIVILAVVFFISGVLQLLIRF 63 (360)
Q Consensus 37 sp~iliIIvIL~ivf~i~~ll~llvr~ 63 (360)
.|.+++++.+++.++++.++++++.++
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777777776666665555555433
No 112
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=66.36 E-value=2.8 Score=30.82 Aligned_cols=35 Identities=23% Similarity=0.554 Sum_probs=26.5
Q ss_pred CCCccccccCccccCccccccC-CCCCccchhhhhh
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLP-MCSHAFHIDCIDT 158 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp-~C~H~FH~~CI~~ 158 (360)
....|.+|...+..++..+... .|.--||..|+.-
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 3467999999987766666555 6998999999854
No 113
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=66.19 E-value=14 Score=25.26 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=6.3
Q ss_pred HHHHHHHHHhcC
Q 038999 58 QLLIRFVIRRRS 69 (360)
Q Consensus 58 ~llvr~l~Rrr~ 69 (360)
.+++.+++|||+
T Consensus 27 ~~~~~~~~RRRr 38 (44)
T 2l2t_A 27 GLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHhhhhh
Confidence 345555555554
No 114
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=66.09 E-value=2.2 Score=39.20 Aligned_cols=44 Identities=36% Similarity=0.644 Sum_probs=25.7
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhcC-----CCCCcccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN-----STCPLCRG 171 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-----~tCP~CR~ 171 (360)
.|.+|...-..+ .+.....|...||..|+++=|... =.||.|+.
T Consensus 176 ~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 477777642223 334444699999999999655431 24999964
No 115
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=64.53 E-value=3.9 Score=30.54 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=3.9
Q ss_pred CCCccchh
Q 038999 147 CSHAFHID 154 (360)
Q Consensus 147 C~H~FH~~ 154 (360)
|.|-|-+.
T Consensus 59 C~hr~qk~ 66 (70)
T 2klu_A 59 SPHRFQKT 66 (70)
T ss_dssp CCCCCCCC
T ss_pred CcHHHhhc
Confidence 55555433
No 116
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=63.96 E-value=1.8 Score=32.28 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=31.2
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhh----hcCCCCCcccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWL----LSNSTCPLCRG 171 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl----~~~~tCP~CR~ 171 (360)
+...| ||......+...+....|..-||..|+..-- .....||.|+.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 34568 7988765554344444598889999987532 23456999975
No 117
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=63.91 E-value=1.6 Score=36.20 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=32.3
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGN 172 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 172 (360)
..|..|...|..-..-.-...||.+||..|..........|-.|...
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 57999999997643222333699999999988876666778888553
No 118
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=63.71 E-value=36 Score=26.82 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=35.0
Q ss_pred CCccccccCccccC---ccccccCCCCCccchhhhhhhhh-cCCCCCccccccccC
Q 038999 125 PFDCAVCLCEFSEQ---DKLRLLPMCSHAFHIDCIDTWLL-SNSTCPLCRGNLYIH 176 (360)
Q Consensus 125 ~~~C~ICle~f~~~---~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~ 176 (360)
...|.||-+++-.. +.......|+--.|..|.+-=.+ .++.||-|+..+-.+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 45899999985432 22222223677789999875443 467899999887654
No 119
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=63.68 E-value=2.3 Score=32.17 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=30.8
Q ss_pred CCCccccccCccccCcccccc-CCCCCccchhhhhhhhh---------cCCCCCccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLL-PMCSHAFHIDCIDTWLL---------SNSTCPLCRGN 172 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~l-p~C~H~FH~~CI~~Wl~---------~~~tCP~CR~~ 172 (360)
+...| ||......+..+..- +.|..-||..|+.---. .+..||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 45678 898875444333333 04999999999964221 34569999753
No 120
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=60.58 E-value=3.3 Score=33.60 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=23.8
Q ss_pred CccccccCcccc------CccccccCCCCCccchhhhhhhh
Q 038999 126 FDCAVCLCEFSE------QDKLRLLPMCSHAFHIDCIDTWL 160 (360)
Q Consensus 126 ~~C~ICle~f~~------~~~~~~lp~C~H~FH~~CI~~Wl 160 (360)
..|.||+..-.. .+.+..-..|+..||..|+..++
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChh
Confidence 469999876421 12344444599999999998763
No 121
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=60.16 E-value=10 Score=25.98 Aligned_cols=11 Identities=45% Similarity=0.640 Sum_probs=5.5
Q ss_pred HHHHHHHHhcC
Q 038999 59 LLIRFVIRRRS 69 (360)
Q Consensus 59 llvr~l~Rrr~ 69 (360)
+++.+++|||+
T Consensus 29 ~~~~~~~RRr~ 39 (44)
T 2ks1_B 29 LGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHhhhhH
Confidence 44445555554
No 122
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=60.10 E-value=7.7 Score=31.40 Aligned_cols=48 Identities=21% Similarity=0.420 Sum_probs=30.9
Q ss_pred CCCCccccccCccccCccccccC--CCCCccchhhhhhhhhcCC----CCCccccccccC
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLP--MCSHAFHIDCIDTWLLSNS----TCPLCRGNLYIH 176 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp--~C~H~FH~~CI~~Wl~~~~----tCP~CR~~l~~~ 176 (360)
.+...|.+|.+. ++ +..-. .|...||..|+. |.... .||.|+..+...
T Consensus 13 ~~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 455689999843 33 33333 488999999997 44322 488776555443
No 123
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=59.42 E-value=2.5 Score=33.89 Aligned_cols=44 Identities=23% Similarity=0.478 Sum_probs=28.1
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhcC----CCCCcccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSN----STCPLCRG 171 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~ 171 (360)
.|.||...-... .+..-..|...||..|+.+=|... -.||.|+.
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 466776653332 333344589999999998755432 24888854
No 124
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=59.34 E-value=3.6 Score=30.47 Aligned_cols=47 Identities=19% Similarity=0.496 Sum_probs=30.4
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhh---cCCCCCcccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL---SNSTCPLCRG 171 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~ 171 (360)
.+...| ||......+..+. ...|..-||..|+..-.. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIq-Cd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIE-CNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEE-CTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEE-CCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344578 9988765323444 345998999999865322 2346998864
No 125
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=57.92 E-value=9.1 Score=30.73 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCccccccCccc-----cCccccccCCCCCccchhhhhh
Q 038999 125 PFDCAVCLCEFS-----EQDKLRLLPMCSHAFHIDCIDT 158 (360)
Q Consensus 125 ~~~C~ICle~f~-----~~~~~~~lp~C~H~FH~~CI~~ 158 (360)
...|.+|+..=. .++.+..-..|+..||..||..
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 357999987521 1223444445999999999964
No 126
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.65 E-value=3.5 Score=30.82 Aligned_cols=45 Identities=22% Similarity=0.416 Sum_probs=30.3
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhh---------hcCCCCCccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWL---------LSNSTCPLCRGN 172 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl---------~~~~tCP~CR~~ 172 (360)
..| ||...+..+..+..- .|..-||..|+.--. .....||.|+..
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 457 898876543444433 599999999985432 135679999753
No 127
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=57.59 E-value=6.1 Score=30.68 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=35.7
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhhh-------cCCCCCcccccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL-------SNSTCPLCRGNLYI 175 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~-------~~~tCP~CR~~l~~ 175 (360)
.+...|.+|...|..-..-.-...||++||..|....+. ....|-.|-..|..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 445689999999986432222335999999999876432 22458888665544
No 128
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=57.16 E-value=7.1 Score=29.85 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=26.6
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhh
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTW 159 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~W 159 (360)
+...|.+|...|..-..-.-...||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456899999999864322223369999999998765
No 129
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=57.04 E-value=6.9 Score=29.78 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=27.2
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhh
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWL 160 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl 160 (360)
.+...|.+|...|..-..-.-...||++||..|....+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCee
Confidence 34568999999998643222233699999999987643
No 130
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=56.85 E-value=2.1 Score=34.80 Aligned_cols=46 Identities=22% Similarity=0.593 Sum_probs=30.0
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhcCC----CCCcccccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNS----TCPLCRGNL 173 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~l 173 (360)
.|.||...-..++.+ .-..|...||..|+.+=|.... .||.|+..+
T Consensus 60 ~C~~C~~~~~~~~ll-~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLL-FCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEE-ECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceE-EcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 577887653333333 3445999999999996554322 499886544
No 131
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=56.67 E-value=27 Score=26.20 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038999 41 LFIIVILAVVFFISGVLQLLIRFVIRR 67 (360)
Q Consensus 41 liIIvIL~ivf~i~~ll~llvr~l~Rr 67 (360)
=+.-+|++.++|++++++++..-+..+
T Consensus 17 RiGGLifA~vLfi~GI~iilS~KckCk 43 (72)
T 2jo1_A 17 QIGGLVIAGILFILGILIVLSRRCRCK 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHcCccccC
Confidence 344556777777888777776654433
No 132
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=55.99 E-value=20 Score=24.19 Aligned_cols=27 Identities=7% Similarity=0.234 Sum_probs=16.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 36 ISPAILFIIVILAVVFFISGVLQLLIR 62 (360)
Q Consensus 36 isp~iliIIvIL~ivf~i~~ll~llvr 62 (360)
-.|.+++++.+++.++++..++.++.+
T Consensus 7 ~vp~wiIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777766666555555543
No 133
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=55.80 E-value=2.4 Score=41.37 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=0.0
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhc-------CCCCCcccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS-------NSTCPLCRGNL 173 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~-------~~tCP~CR~~l 173 (360)
+...|.+|...|..-..-.....||++||..|...++.. ...|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 346799999999754322333369999999999776421 34577775443
No 134
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=55.73 E-value=6.1 Score=30.72 Aligned_cols=49 Identities=16% Similarity=0.388 Sum_probs=33.3
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhc------CCCCCcccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS------NSTCPLCRGNL 173 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR~~l 173 (360)
...|.+|...|..-..-.-...||++||..|...++.. ...|-.|-..|
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 45799999999864333333469999999998876421 23477775544
No 135
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=55.68 E-value=3.4 Score=29.73 Aligned_cols=44 Identities=30% Similarity=0.595 Sum_probs=27.3
Q ss_pred CCCCccccccCccccCccccccCC--CC-Cccchhhhhhhhhc----CCCCCcccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPM--CS-HAFHIDCIDTWLLS----NSTCPLCRG 171 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~ 171 (360)
.+...| ||.... .+ ..+.-.+ |. .-||..|+. |.. +-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 344567 898764 23 3444445 65 689999998 332 235999964
No 136
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=54.94 E-value=6.1 Score=32.66 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=26.1
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhh
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTW 159 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~W 159 (360)
+...|.+|...|..-..-.-...||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 345799999999864322233369999999997664
No 137
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.92 E-value=7.9 Score=29.53 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=25.2
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhh
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDT 158 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~ 158 (360)
.+...|.+|...|..-..-.-...||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 344689999999975432222335999999999654
No 138
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=54.33 E-value=23 Score=25.29 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 37 SPAILFIIVILAVVFFISGVLQLLIRF 63 (360)
Q Consensus 37 sp~iliIIvIL~ivf~i~~ll~llvr~ 63 (360)
.|.+++++.+++.++++.+++.++.++
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356666667666666655555555433
No 139
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=54.20 E-value=9.3 Score=31.98 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=31.3
Q ss_pred CCCCccccccCccccCccccccCCCCCccchhhhhhhh------hc-----CCCCCccccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWL------LS-----NSTCPLCRGN 172 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl------~~-----~~tCP~CR~~ 172 (360)
..+..|.||.+- ++ +..-..|-.+||..||.+=+ .. .=.|++|+..
T Consensus 55 g~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345679999875 33 44445699999999999742 11 1359999653
No 140
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=53.84 E-value=6.1 Score=35.42 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=26.7
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhh
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWL 160 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl 160 (360)
+...|.+|...|..-..-.-...||++||..|.....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 3468999999997543222333699999999977643
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=52.80 E-value=6.5 Score=35.58 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=32.9
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhh--------cCCCCCcccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL--------SNSTCPLCRGNL 173 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~--------~~~tCP~CR~~l 173 (360)
...|.+|...|..-..-.-...||++||..|...... ....|-.|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 4689999999986433233346999999999876532 123476675443
No 142
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=52.50 E-value=2.6 Score=31.04 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=27.6
Q ss_pred CCccccccCccccCcccccc-CCCCCccchhhhhhhh---h-----cCCCCCcccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLL-PMCSHAFHIDCIDTWL---L-----SNSTCPLCRG 171 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~l-p~C~H~FH~~CI~~Wl---~-----~~~tCP~CR~ 171 (360)
...| ||......+..+..- +.|..-||..|+.--- . .+-.||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3457 797665554444332 1388889999984311 0 1356999974
No 143
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=52.32 E-value=8.7 Score=28.53 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=24.7
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhh
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTW 159 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~W 159 (360)
..|.+|...|..-..-.-...||++|+..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 4799999999864322223359999999997654
No 144
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=52.28 E-value=4 Score=29.39 Aligned_cols=43 Identities=30% Similarity=0.601 Sum_probs=26.6
Q ss_pred CCCccccccCccccCccccccCC--CC-Cccchhhhhhhhhc----CCCCCcccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPM--CS-HAFHIDCIDTWLLS----NSTCPLCRG 171 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~ 171 (360)
+...| ||..... + ..+.-.. |. .-||..|+. |.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44567 8987632 3 3444444 44 679999998 433 235999864
No 145
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=50.52 E-value=14 Score=27.42 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038999 40 ILFIIVILAVVFFISGVLQLLIRFVIRRR 68 (360)
Q Consensus 40 iliIIvIL~ivf~i~~ll~llvr~l~Rrr 68 (360)
+=+.-+|++.++|++++++++..-+..++
T Consensus 17 LRigGLifA~vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred heecchhhHHHHHHHHHHHHHcCcccccC
Confidence 33445567777788888777765444433
No 146
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.02 E-value=11 Score=27.06 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=28.7
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..|+.|-+.+...+.+.. .-+..||..| .+|-.|..+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLE--YGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEEC--STTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEE--ECccccCccc--------CeECCCCCcCCC
Confidence 479999999886533322 2578999988 568888877643
No 147
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=49.46 E-value=27 Score=22.94 Aligned_cols=7 Identities=0% Similarity=0.107 Sum_probs=2.8
Q ss_pred CCChHHH
Q 038999 35 KISPAIL 41 (360)
Q Consensus 35 ~isp~il 41 (360)
..+...+
T Consensus 7 ~ls~GaI 13 (38)
T 2k1k_A 7 GLTGGEI 13 (38)
T ss_dssp TCCHHHH
T ss_pred CCCCCce
Confidence 3444433
No 148
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.28 E-value=15 Score=26.24 Aligned_cols=40 Identities=23% Similarity=0.522 Sum_probs=28.2
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
...|+.|-+.+...+.+. .. -+..||..| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a-~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGV-VA-LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCE-EC-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEE-EE-CCCeEcccC--------CcccccCCcCC
Confidence 357999999877643322 22 578899888 56888988774
No 149
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=48.30 E-value=3.9 Score=31.07 Aligned_cols=14 Identities=29% Similarity=0.797 Sum_probs=13.2
Q ss_pred CCCCccchhhhhhh
Q 038999 146 MCSHAFHIDCIDTW 159 (360)
Q Consensus 146 ~C~H~FH~~CI~~W 159 (360)
.|+|.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999999999
No 150
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.28 E-value=9.1 Score=32.14 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=31.8
Q ss_pred CCCCccccccCccc-cCccccccCCCCCccchhhhhhhhhc-CC---CCCccccc
Q 038999 123 KEPFDCAVCLCEFS-EQDKLRLLPMCSHAFHIDCIDTWLLS-NS---TCPLCRGN 172 (360)
Q Consensus 123 ~~~~~C~ICle~f~-~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~---tCP~CR~~ 172 (360)
.+...|.+|...|. ....-+....|.|.+|..|-..-... +. .|-+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 34578999999984 22222333459999999997642111 11 28888764
No 151
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=47.20 E-value=8.5 Score=28.05 Aligned_cols=38 Identities=21% Similarity=0.459 Sum_probs=25.2
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
.|+.|-+.+..++.+.. -+..||..| ..|-.|+.+|..
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCCC
Confidence 57888887775554432 467788777 457778776643
No 152
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.09 E-value=20 Score=25.59 Aligned_cols=40 Identities=28% Similarity=0.465 Sum_probs=28.7
Q ss_pred CCccccccCcccc--CccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 125 PFDCAVCLCEFSE--QDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 125 ~~~C~ICle~f~~--~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
...|+-|-+.+.. ++.+. . .-+..||.+| ..|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~-a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-S-FEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-E-CSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceE-E-ECCcccCccc--------CEeccCCCcCC
Confidence 3579999998875 32332 2 2678999988 56889988775
No 153
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.06 E-value=13 Score=27.59 Aligned_cols=39 Identities=28% Similarity=0.570 Sum_probs=29.7
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
...|+-|-+.+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 4579999999876665543 467899888 56888987774
No 154
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=46.73 E-value=13 Score=29.95 Aligned_cols=37 Identities=19% Similarity=0.544 Sum_probs=26.8
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNL 173 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 173 (360)
.|+.|-..+...+.+.. .-++.||..| ..|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEE--ECCccccccc--------CccccCCCCC
Confidence 69999998876544422 2578899988 5577887766
No 155
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.54 E-value=18 Score=26.85 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=30.5
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
...|+.|-+.+...+.+.. -+..||..| ..|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 4589999999876555542 578999999 5688898877543
No 156
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=46.53 E-value=12 Score=29.31 Aligned_cols=35 Identities=14% Similarity=0.368 Sum_probs=15.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 28 KESSSGNKISPAILFIIVILAVVFFISGVLQLLIRFV 64 (360)
Q Consensus 28 ~~sSS~~~isp~iliIIvIL~ivf~i~~ll~llvr~l 64 (360)
.+++.+-+++|.+++++.+++++++ ++||++.++.
T Consensus 51 tdds~GlKV~P~~VLv~sl~FIa~V--ilLHI~gK~~ 85 (87)
T 2ww9_C 51 TDEANGFRVDSLVVLFLSVGFIFSV--IALHLLTKFT 85 (87)
T ss_dssp -------CCCHHHHHHHHHHHHHHH--HHC-------
T ss_pred hcCCCceEEcCeeehhhHHHHHHHH--HHHHHhhhhc
Confidence 4667889999998887777665553 3567776654
No 157
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=46.50 E-value=3.3 Score=31.82 Aligned_cols=42 Identities=24% Similarity=0.570 Sum_probs=25.4
Q ss_pred cccccCccccC--ccccccCCCCCccchhhhhhhhhcCC--CCCcc
Q 038999 128 CAVCLCEFSEQ--DKLRLLPMCSHAFHIDCIDTWLLSNS--TCPLC 169 (360)
Q Consensus 128 C~ICle~f~~~--~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCP~C 169 (360)
|+-|-..+... ......+.|+|.||..|-..|=..|. +|..-
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHH
Confidence 66555544322 22234446999999999999955553 45443
No 158
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=46.20 E-value=2.7 Score=27.32 Aligned_cols=17 Identities=29% Similarity=0.696 Sum_probs=11.9
Q ss_pred CCCccccccCccccCcc
Q 038999 124 EPFDCAVCLCEFSEQDK 140 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~ 140 (360)
+.+.|+||+..|...+.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 34788888888776443
No 159
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.13 E-value=11 Score=26.89 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=28.5
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..|+.|-+.+...+.+... -+..||..| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 4799999998875433322 567899888 568888877643
No 160
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.74 E-value=15 Score=26.51 Aligned_cols=41 Identities=20% Similarity=0.435 Sum_probs=29.4
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
...|+-|.+.+...+.+... -+..||..| ..|-.|..+|..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 45899999998754444322 577899888 568888877754
No 161
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.49 E-value=11 Score=27.33 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=30.3
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
...|+.|-+.+..++.+.. -+..||..| ..|-.|+.+|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 3579999999886665442 578899888 568899887753
No 162
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=44.31 E-value=11 Score=36.91 Aligned_cols=48 Identities=17% Similarity=0.455 Sum_probs=29.9
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhh---c--CCCCCccccccccCC
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL---S--NSTCPLCRGNLYIHG 177 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~---~--~~tCP~CR~~l~~~~ 177 (360)
..|+|-+..|.. .+|-.. |.|+-|.+ +..||. + .-.||+|.+.+....
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCccccccc--cCcCCc-CCCcceEC-HHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 469988888765 355555 99984333 233332 2 235999988775443
No 163
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=43.40 E-value=6.2 Score=28.66 Aligned_cols=46 Identities=28% Similarity=0.577 Sum_probs=27.0
Q ss_pred CCCCccccccCccccCccccccCC--CC-Cccchhhhhhhhh--cCCCCCcccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPM--CS-HAFHIDCIDTWLL--SNSTCPLCRG 171 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~--C~-H~FH~~CI~~Wl~--~~~tCP~CR~ 171 (360)
++...| ||.... .++ .+.-.+ |. .-||..|+.---. .+-.||.|+.
T Consensus 9 ~e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 344567 898853 233 344445 44 7899999973111 1335999964
No 164
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=43.18 E-value=17 Score=28.24 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=29.1
Q ss_pred CCCccccccCccccCccccccCCCCCccchhhhhhhhhc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS 162 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~ 162 (360)
....|.+|.+.++..--+..-..=.|.||..|-...+++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 356899999998875444433334699999999998875
No 165
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.79 E-value=15 Score=26.93 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=29.0
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..|+.|-+.+..++.+.. . -+..||..| .+|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE-Y-KGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE-C-SSCEEETTT--------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceEEE-E-Ccccccccc--------CchhhCCCccCC
Confidence 579999999886554322 2 577899888 568888877654
No 166
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=41.65 E-value=13 Score=36.31 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=30.4
Q ss_pred CccccccCccccCccccccCCCCCc--cchhhhhhhhhcC--CCCCccccccccCC
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHA--FHIDCIDTWLLSN--STCPLCRGNLYIHG 177 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~--FH~~CI~~Wl~~~--~tCP~CR~~l~~~~ 177 (360)
..|+|-+..|.. .+|-.. |.|+ |-..-+.....+. -.||+|.+.+...+
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 469988887765 355555 9998 4433333322222 35999998776544
No 167
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=41.30 E-value=57 Score=21.72 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038999 44 IVILAVVFFISGVLQLLIRF 63 (360)
Q Consensus 44 IvIL~ivf~i~~ll~llvr~ 63 (360)
++|++++.-+++.+.++..+
T Consensus 14 lII~~vmaGiIG~IllI~y~ 33 (40)
T 1afo_A 14 LIIFGVMAGVIGTILLISYG 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333
No 168
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=40.90 E-value=13 Score=24.17 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhc
Q 038999 56 VLQLLIRFVIRRR 68 (360)
Q Consensus 56 ll~llvr~l~Rrr 68 (360)
++.+.+-++.|||
T Consensus 22 ii~l~~~~~iRRr 34 (35)
T 1iij_A 22 ILVVVVGILIKRR 34 (35)
T ss_dssp HHTTTTTHHHHHC
T ss_pred HHHHHhheEEeec
Confidence 3344444555554
No 169
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=40.37 E-value=11 Score=29.60 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=27.4
Q ss_pred CCCCccccccCccccCccccccCCCC---Cccchhhhhhhh--hcCCCCCc-ccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMCS---HAFHIDCIDTWL--LSNSTCPL-CRG 171 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C~---H~FH~~CI~~Wl--~~~~tCP~-CR~ 171 (360)
.+...| ||..... ++ .+....|. .-||..|+.--- ...-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 445568 9987532 33 34444555 679999996211 11335999 974
No 170
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=40.24 E-value=6 Score=34.01 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=31.9
Q ss_pred CCCccccccCccc--cCccccccCCCCCccchhhhhhhhhcCC--CCCccccc
Q 038999 124 EPFDCAVCLCEFS--EQDKLRLLPMCSHAFHIDCIDTWLLSNS--TCPLCRGN 172 (360)
Q Consensus 124 ~~~~C~ICle~f~--~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCP~CR~~ 172 (360)
+...|++|...|. .+...... .|.|.+|..|- .|+.... .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCC-CCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 4578999999864 33344444 49999999997 3544332 28888653
No 171
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=38.91 E-value=18 Score=22.29 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=20.5
Q ss_pred CccccccCccccCccccccCCCCCccchhhh
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCI 156 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI 156 (360)
..|+.|-...-..+.+. .-+..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE---ECCeEecccCC
Confidence 47999988876655444 25789999984
No 172
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.36 E-value=23 Score=25.96 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=28.7
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
...|+.|-+.+.. +.+ . .-+..||..| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~-~~~--~-a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFV--K-LRDRHRHPEC--------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCS-SCE--E-CSSCEECTTT--------TSCSSSCCCHHH
T ss_pred CCccccCCCCccC-cEE--E-ECcceeCcCc--------CeeCCCCCCCCC
Confidence 4589999998875 222 2 2678999998 468899887753
No 173
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=38.10 E-value=16 Score=25.74 Aligned_cols=42 Identities=19% Similarity=0.444 Sum_probs=30.1
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccccC
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYIH 176 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (360)
...|+.|...+...+.+... -+..||..|. .|-.|..+|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 35799999998876654322 5678998884 688888777543
No 174
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.26 E-value=46 Score=25.29 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 038999 50 VFFISGVLQLLIRFV 64 (360)
Q Consensus 50 vf~i~~ll~llvr~l 64 (360)
++++-+++.++++++
T Consensus 21 illiGllllliwk~~ 35 (79)
T 2knc_B 21 ILLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333444433
No 175
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=36.81 E-value=46 Score=21.66 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038999 41 LFIIVILAVVFFISGVLQLLIR 62 (360)
Q Consensus 41 liIIvIL~ivf~i~~ll~llvr 62 (360)
+-+|+-|+++|++++.-++++|
T Consensus 10 lt~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEEEc
Confidence 3445556667766665555544
No 176
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.62 E-value=19 Score=26.16 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=27.8
Q ss_pred CccccccCcccc--CccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 126 FDCAVCLCEFSE--QDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 126 ~~C~ICle~f~~--~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
..|+.|-+.+.. +.... .. -+..||.+| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~-~a-~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFI-CF-QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEE-EE-TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeE-EE-CCcccCccc--------CChhhCCCcCC
Confidence 479999998875 22232 22 578899998 56888988775
No 177
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.38 E-value=32 Score=25.28 Aligned_cols=39 Identities=21% Similarity=0.456 Sum_probs=28.8
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
...|+-|-+.+. +..+. .-+..||.+| .+|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI---FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC---CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceEEE---ECcceeCCCC--------CEeCCCCCccCC
Confidence 357999999887 33332 3678899888 568899887764
No 178
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=35.90 E-value=40 Score=22.45 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 38 PAILFIIVILAVVFFISGVLQLLIRFVIR 66 (360)
Q Consensus 38 p~iliIIvIL~ivf~i~~ll~llvr~l~R 66 (360)
-.+++|+.+.+.++..+.++.+.++.+.+
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~rl~K 39 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIRRLIK 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56888899999888888888888887754
No 179
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.27 E-value=25 Score=26.40 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=28.5
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
...|+.|-+.+.. ..+ . .-+..||.+| ..|-.|...|..
T Consensus 25 ~~~C~~C~~~I~~-~~~--~-a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVV--K-ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-CCE--E-SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred CCCcccCCCEecc-cEE--E-ECCceECccC--------CEecCCCCCCCC
Confidence 4579999998875 322 2 2678999998 568889877754
No 180
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.24 E-value=24 Score=26.61 Aligned_cols=40 Identities=25% Similarity=0.597 Sum_probs=29.8
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
...|+.|-+.+...+.+. . -+..||..| ..|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTT--------CBCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCC--------CeeCCCCCCCCC
Confidence 358999999988665543 2 678999998 558888877654
No 181
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=35.23 E-value=33 Score=23.37 Aligned_cols=22 Identities=9% Similarity=0.221 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 038999 47 LAVVFFISGVLQLLIRFVIRRR 68 (360)
Q Consensus 47 L~ivf~i~~ll~llvr~l~Rrr 68 (360)
+++++++.+++.+++|...+++
T Consensus 20 v~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHHHhhhhhhhh
Confidence 4444455555555565544443
No 182
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=34.23 E-value=12 Score=25.91 Aligned_cols=41 Identities=20% Similarity=0.487 Sum_probs=25.5
Q ss_pred cccCccccCccccccCCCCCccchhhhhhhhh---cCCCCCcccc
Q 038999 130 VCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL---SNSTCPLCRG 171 (360)
Q Consensus 130 ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~ 171 (360)
||......+..+. -..|..-||..|+.---. ..-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~-Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIE-CNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEE-CTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEE-cCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544223333 335888899999864322 2446999875
No 183
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.14 E-value=29 Score=25.39 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=27.6
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
..|+.|-+.+..++.+.. .-+..||..| ..|-.|..+|.
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTT--------SBCTTTCCBCS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccC--------CeecCCCCccC
Confidence 479999998884333322 2478899888 55888887775
No 184
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=33.94 E-value=10 Score=27.62 Aligned_cols=48 Identities=23% Similarity=0.488 Sum_probs=30.9
Q ss_pred CCCCccccccCc-cccCccccccCCCCCccchhhhhhhhhcCC----CCCcccc
Q 038999 123 KEPFDCAVCLCE-FSEQDKLRLLPMCSHAFHIDCIDTWLLSNS----TCPLCRG 171 (360)
Q Consensus 123 ~~~~~C~ICle~-f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~ 171 (360)
++...|.||+.. |.++-.-...- |.-.||..|-..|-.+.+ .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccc-cCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 455789999875 55544333333 777788888777754332 2777765
No 185
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=33.89 E-value=28 Score=27.65 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=21.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 29 ESSSGNKISPAILFIIVILAVVFFISGVLQLLI 61 (360)
Q Consensus 29 ~sSS~~~isp~iliIIvIL~ivf~i~~ll~llv 61 (360)
+++.+-+++|..++++.++++++++ +||++.
T Consensus 61 dds~GlKV~P~~VLv~sl~Fi~~Vi--~Lhi~~ 91 (96)
T 2wwb_C 61 EDSPGLKVGPVPVLVMSLLFIASVF--MLHIWG 91 (96)
T ss_dssp CCSCCCCCSSCSHHHHHHHHHHHHH--HHSCSS
T ss_pred cCCCceEECCEEehhhHHHHHHHHH--HHHHhh
Confidence 4667899999988887776665543 345443
No 186
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=33.83 E-value=22 Score=24.89 Aligned_cols=38 Identities=13% Similarity=0.315 Sum_probs=27.8
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..|+.|-+.+. ++.+ . .-+..||..| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~-~~~~--~-a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRVV--N-AMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCEE--C-CTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ceEE--E-ECccccccCc--------CEECCCCCCCCC
Confidence 47999999887 4433 2 2578899888 568899887753
No 187
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.60 E-value=29 Score=25.06 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=26.9
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
..|+-|-..+.. ..+ ..-+..||.+| .+|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~-~~v---~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL---EAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCB---CCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-eeE---EeCCCCCCCCc--------CEeCCCCCCCC
Confidence 479999988765 222 23678999988 56888887765
No 188
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=33.55 E-value=34 Score=24.21 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 038999 25 DYQKESSSGNKISPAILFIIVILAVVFFIS 54 (360)
Q Consensus 25 ~~~~~sSS~~~isp~iliIIvIL~ivf~i~ 54 (360)
+|. ++..+-+++|..++++.++++++.++
T Consensus 18 yy~-ee~~giKi~P~~Vl~~si~~i~~V~~ 46 (53)
T 1rh5_C 18 YMD-ETFSKIRVKPEHVIGVTVAFVIIEAI 46 (53)
T ss_dssp ----CCCCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred hhh-ccCCccccCCeehhhhHHHHHHHHHH
Confidence 444 44449999999888877766665443
No 189
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.95 E-value=34 Score=24.96 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=27.0
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
..|+.|-+.+. +..+. .-+..||.+| ..|-.|...|.
T Consensus 16 ~~C~~C~~~I~-~~~~~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFMV---AGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCCBC---CTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcC-ceEEE---ECCceecccc--------CCccCCCCccC
Confidence 46999999887 33322 2578899888 56888987774
No 190
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.56 E-value=36 Score=24.04 Aligned_cols=39 Identities=21% Similarity=0.442 Sum_probs=27.7
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
...|+.|-+.+.. +.+. .-+..||.+| ..|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK---AMNNSWHPEC--------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE---ETTEEECTTT--------SBCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEE---ECcccccccC--------CEeCCCCCcCCC
Confidence 3579999998873 3332 2578899888 468889877654
No 191
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.28 E-value=32 Score=24.64 Aligned_cols=36 Identities=17% Similarity=0.486 Sum_probs=23.5
Q ss_pred CccccccCccccCccccccC--C--CCCccchhhhhhhhh
Q 038999 126 FDCAVCLCEFSEQDKLRLLP--M--CSHAFHIDCIDTWLL 161 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp--~--C~H~FH~~CI~~Wl~ 161 (360)
..|+-|.-.++..+....+. . |+|.|+..|...|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 47888888877655433333 2 667777777777753
No 192
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.15 E-value=46 Score=23.41 Aligned_cols=37 Identities=22% Similarity=0.532 Sum_probs=27.2
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
..|+.|-+.+.. +.+ .. -+..||.+| .+|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGV--TY-REQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS-SEE--ES-SSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeecc-ceE--EE-CccccCCCC--------CccCCCCCcCC
Confidence 479999998874 332 22 678999888 56888988774
No 193
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=30.06 E-value=21 Score=28.91 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=29.1
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
...|+-|-+.+.....+. .-+..||..| ..|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY---AMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE---ETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE---eCCcEEcccc--------cCcCcCCCccc
Confidence 357999999887533233 2678899998 66999998886
No 194
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=29.96 E-value=15 Score=26.96 Aligned_cols=39 Identities=26% Similarity=0.525 Sum_probs=29.0
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..|+.|-+.+..++.+.. -+..||.+| ..|-.|+.+|..
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECS
T ss_pred CcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCC
Confidence 579999999876664432 578899888 458888887744
No 195
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=29.75 E-value=55 Score=22.23 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038999 47 LAVVFFISGVLQLLIRFVI 65 (360)
Q Consensus 47 L~ivf~i~~ll~llvr~l~ 65 (360)
+++++++.+++.+++|...
T Consensus 21 v~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhhhH
Confidence 3333334444445555443
No 196
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.50 E-value=21 Score=28.92 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=16.1
Q ss_pred CCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 146 MCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 146 ~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
+||+.| . .=+.....||.|+..-..
T Consensus 72 ~CG~~F----~-~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 72 KCGFVF----K-AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTCCBC----C-CCSSCCSSCSSSCCCCBC
T ss_pred hCcCee----c-ccCCCCCCCcCCCCCccC
Confidence 499998 1 123345679999875443
No 197
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=29.14 E-value=12 Score=37.90 Aligned_cols=47 Identities=23% Similarity=0.455 Sum_probs=30.3
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhh-----cCCCCCccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL-----SNSTCPLCRGN 172 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~ 172 (360)
...| ||...+..+...+....|.--||..|+.---. ..-.||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3446 89887653443444445998899999854222 23469999764
No 198
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.03 E-value=25 Score=26.47 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=28.5
Q ss_pred CCccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 125 PFDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 125 ~~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
...|+.|-+.+. ++.+. . -+..||..| ..|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCCC
Confidence 357999999885 33332 2 678999988 568899887764
No 199
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=27.81 E-value=19 Score=26.72 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=29.2
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhh-----cCCCCCccccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLL-----SNSTCPLCRGN 172 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~ 172 (360)
.| ||...+..+...+....|.--||..|+.---. ..-.||.|+..
T Consensus 12 yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 45 88876654434444445898899999964322 24569999754
No 200
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=27.79 E-value=46 Score=22.71 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 038999 57 LQLLIRF 63 (360)
Q Consensus 57 l~llvr~ 63 (360)
+.+++|.
T Consensus 31 ~~~~~RR 37 (44)
T 2jwa_A 31 FGILIKR 37 (44)
T ss_dssp HHHHHHH
T ss_pred HHhheeh
Confidence 3444443
No 201
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.26 E-value=33 Score=33.80 Aligned_cols=44 Identities=23% Similarity=0.583 Sum_probs=31.2
Q ss_pred CCCccccccCccccCccccccC--CCCCccchhhhhhhhhc----------CCCCCcccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLP--MCSHAFHIDCIDTWLLS----------NSTCPLCRG 171 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp--~C~H~FH~~CI~~Wl~~----------~~tCP~CR~ 171 (360)
.+..|.+|-+. + .+.... .|...||..||+..+.. .=.|=+|.-
T Consensus 92 ~~~yCr~C~~G---g-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG---E-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC---S-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC---C-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 45689999875 3 344444 59999999999999832 235888854
No 202
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=27.17 E-value=1.1e+02 Score=19.97 Aligned_cols=11 Identities=36% Similarity=0.468 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 038999 47 LAVVFFISGVL 57 (360)
Q Consensus 47 L~ivf~i~~ll 57 (360)
+.+++++.+++
T Consensus 11 livalIiaIVV 21 (36)
T 1pi7_A 11 LVVAIIIAIVV 21 (36)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 203
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=26.91 E-value=32 Score=24.74 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=27.9
Q ss_pred CccccccCcccc---CccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 126 FDCAVCLCEFSE---QDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~~---~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..|+-|-+.+.. ..... .. -+..||..| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~-~a-~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVV-AY-EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEE-EE-TTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeE-EE-CcceeCccc--------CEehhcCCCCCC
Confidence 479999998874 22222 22 567899888 568899887753
No 204
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=26.55 E-value=1.1e+02 Score=18.44 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=4.2
Q ss_pred ChHHHHHHHH
Q 038999 37 SPAILFIIVI 46 (360)
Q Consensus 37 sp~iliIIvI 46 (360)
+|.+..++.|
T Consensus 2 spiVA~~lLI 11 (26)
T 3j1r_A 2 SPVIATLLLI 11 (26)
T ss_dssp CHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 4544433333
No 205
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=26.44 E-value=22 Score=26.27 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=16.2
Q ss_pred hhhhhhcCCCCCcccccccc
Q 038999 156 IDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 156 I~~Wl~~~~tCP~CR~~l~~ 175 (360)
++.||..--.||.|+.++..
T Consensus 3 md~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEE
T ss_pred CCHHHHHHhCCCCCCCcCeE
Confidence 56788888899999987754
No 206
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=26.27 E-value=32 Score=29.75 Aligned_cols=43 Identities=19% Similarity=0.537 Sum_probs=30.3
Q ss_pred CCCccccccCccccCccccccC--CCCCccchhhhhhhhhc----------CCCCCccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLP--MCSHAFHIDCIDTWLLS----------NSTCPLCR 170 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp--~C~H~FH~~CI~~Wl~~----------~~tCP~CR 170 (360)
.+..|.||-+. ..+.... .|...||..||+.++.. .=.|=+|.
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 45779999864 3344433 58999999999998743 12488885
No 207
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=26.08 E-value=35 Score=25.34 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=23.8
Q ss_pred CCCCccccccCccccCccccccCCC-CCccchhhhhh
Q 038999 123 KEPFDCAVCLCEFSEQDKLRLLPMC-SHAFHIDCIDT 158 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~lp~C-~H~FH~~CI~~ 158 (360)
.+..-|.||.++ ..++.+. | +-+||..|...
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE 37 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFRE 37 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHH
Confidence 344579999987 3478786 9 78999999666
No 208
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.06 E-value=22 Score=26.46 Aligned_cols=20 Identities=45% Similarity=0.948 Sum_probs=14.7
Q ss_pred hhhhhhcCCCCCcccccccc
Q 038999 156 IDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 156 I~~Wl~~~~tCP~CR~~l~~ 175 (360)
++.||..--.||.|+.++..
T Consensus 1 md~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 1 MDTKLLDILACPICKGPLKL 20 (69)
T ss_dssp --CCGGGTCCCTTTCCCCEE
T ss_pred CChHHHhheeCCCCCCcCeE
Confidence 45678888899999987754
No 209
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=25.39 E-value=1.4e+02 Score=19.98 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038999 45 VILAVVFFISGVLQLLIRFVIR 66 (360)
Q Consensus 45 vIL~ivf~i~~ll~llvr~l~R 66 (360)
.+++.++++-.++.++++++..
T Consensus 15 gvi~~ivliGl~lLliwk~~~~ 36 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIWKLLIT 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444344444444455555543
No 210
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=25.29 E-value=28 Score=26.36 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 40 ILFIIVILAVVFFISGVLQLLIRFVI 65 (360)
Q Consensus 40 iliIIvIL~ivf~i~~ll~llvr~l~ 65 (360)
+=+.-+|++.|+|++++++++.+-+.
T Consensus 19 LRigGLifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 19 LRVVGLIVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred heeccchhHHHHHHHHHHHHHcCccc
Confidence 33445667777778887777755443
No 211
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=25.19 E-value=13 Score=29.63 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=26.3
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhc--------CCCCCcccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLS--------NSTCPLCRG 171 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~tCP~CR~ 171 (360)
.|..|......+..+.....|...||..|+..-... .-.||.|+.
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 344444443334445555569999999998753211 124999964
No 212
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.60 E-value=46 Score=24.09 Aligned_cols=37 Identities=22% Similarity=0.496 Sum_probs=27.0
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
..|+.|-+.+.. +.+ .. -+..||..| ..|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~-~~v--~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQ-GGV--TY-RDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCS-CCE--ES-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecC-cEE--EE-CCchhhhhh--------CCcccCCCcCC
Confidence 479999988865 222 22 678899888 56888988774
No 213
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=24.41 E-value=60 Score=24.51 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=23.9
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
..|+.|-+.+..+..+... -+..||..| .+|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHY--KNRFWHDTC--------FRCAKCLHPLA 44 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEE--TTEEEETTT--------CCCSSSCCCTT
T ss_pred CcCcccCCcccCCceEEEE--CccChhhcC--------CcccccCCCCC
Confidence 4688888877643222221 456777777 45777776663
No 214
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.36 E-value=37 Score=24.77 Aligned_cols=38 Identities=21% Similarity=0.455 Sum_probs=27.0
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..|+.|-+.+. ++.+. .-+..||.+| .+|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~-~~~v~---a~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS---ALGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEE---ETTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEec-cceEE---ECCceeCccC--------CccccCCCCCCC
Confidence 47999999887 33332 2578899888 568888877653
No 215
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.04 E-value=16 Score=34.75 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=32.3
Q ss_pred CCCCccccccCccccCccccc---cCCCCCccchhhhhhhhhcCCCCCcccc
Q 038999 123 KEPFDCAVCLCEFSEQDKLRL---LPMCSHAFHIDCIDTWLLSNSTCPLCRG 171 (360)
Q Consensus 123 ~~~~~C~ICle~f~~~~~~~~---lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (360)
.....|+||-..-... .++. ...-.|.+|.-|-..|-.....||.|-.
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEE 230 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCC
Confidence 4457899998874332 1221 1112367888999999888899999954
No 216
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.93 E-value=31 Score=25.41 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=27.1
Q ss_pred CCCccccccCccccCccccccCCCC---Cccchhhhhhhhh--cCCCCCcccccc
Q 038999 124 EPFDCAVCLCEFSEQDKLRLLPMCS---HAFHIDCIDTWLL--SNSTCPLCRGNL 173 (360)
Q Consensus 124 ~~~~C~ICle~f~~~~~~~~lp~C~---H~FH~~CI~~Wl~--~~~tCP~CR~~l 173 (360)
+...| ||.... .+..+ ....|. .-||..|+..--. ..-.||.|+...
T Consensus 5 ~~~yC-~C~~~~-~g~MI-~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQVS-YGEMV-GCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCCC-CSSEE-CCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCCC-CCCEe-EeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 34456 587752 33333 333453 6799999973211 123599997654
No 217
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.86 E-value=1.2e+02 Score=22.95 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=13.5
Q ss_pred ChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 038999 37 SPAILFIIV-ILAVVFFISGVLQLLIRFVIRR 67 (360)
Q Consensus 37 sp~iliIIv-IL~ivf~i~~ll~llvr~l~Rr 67 (360)
-.+++.++. |+++.++++++.-+++.+.-||
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~~~i~Drr 42 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLLITIHDRK 42 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333333 3444444444444455444444
No 218
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=22.69 E-value=20 Score=25.45 Aligned_cols=20 Identities=30% Similarity=0.570 Sum_probs=15.5
Q ss_pred hhhhhhcCCCCCcccccccc
Q 038999 156 IDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 156 I~~Wl~~~~tCP~CR~~l~~ 175 (360)
++.||..--.||.|+.++..
T Consensus 3 ~d~~lL~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 3 LEAGLLEILACPACHAPLEE 22 (56)
T ss_dssp CCCSCTTSCCCSSSCSCEEE
T ss_pred CCHHHHhheeCCCCCCccee
Confidence 46677777889999987654
No 219
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=22.19 E-value=36 Score=29.28 Aligned_cols=37 Identities=24% Similarity=0.659 Sum_probs=17.3
Q ss_pred ccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccc
Q 038999 127 DCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNL 173 (360)
Q Consensus 127 ~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 173 (360)
.|+.|-..+...+.+.. .-++.||..| .+|-.|...|
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~C--------F~C~~C~~~L 107 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKC--------FTCSTCRNRL 107 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGG--------CBCTTTCCBC
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCC--------CeECCCCCCC
Confidence 35555555443322211 1345566555 3455555544
No 220
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=21.77 E-value=22 Score=26.29 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=14.6
Q ss_pred hhhhhcCCCCCcccccccc
Q 038999 157 DTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 157 ~~Wl~~~~tCP~CR~~l~~ 175 (360)
+.||..--.||.|+.++..
T Consensus 2 d~~LL~iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 2 EKKFLDILVCPVTKGRLEY 20 (68)
T ss_dssp CCSSSCCCBCSSSCCBCEE
T ss_pred ChHHhhheECCCCCCcCeE
Confidence 5677777789999987754
No 221
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=21.61 E-value=28 Score=27.98 Aligned_cols=13 Identities=23% Similarity=0.859 Sum_probs=11.0
Q ss_pred ccchhhhhhhhhc
Q 038999 150 AFHIDCIDTWLLS 162 (360)
Q Consensus 150 ~FH~~CI~~Wl~~ 162 (360)
-||..|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999853
No 222
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.60 E-value=54 Score=22.99 Aligned_cols=37 Identities=22% Similarity=0.515 Sum_probs=26.9
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
..|+.|-+.+.. +.+. . -+..||.+| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGIT--Y-QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEE--E-TTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEE--E-CccccccCc--------CEECCCCCCCC
Confidence 479999998864 3332 2 578899888 46888988775
No 223
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=21.53 E-value=28 Score=27.92 Aligned_cols=12 Identities=33% Similarity=1.118 Sum_probs=10.7
Q ss_pred ccchhhhhhhhh
Q 038999 150 AFHIDCIDTWLL 161 (360)
Q Consensus 150 ~FH~~CI~~Wl~ 161 (360)
-||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 224
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=21.24 E-value=1.5e+02 Score=24.68 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038999 39 AILFIIVILAVVFFISGVLQLLIRFVIR 66 (360)
Q Consensus 39 ~iliIIvIL~ivf~i~~ll~llvr~l~R 66 (360)
.+.|++++.+..||+++|+.-++|-..+
T Consensus 53 ylYIL~vmgffgff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 53 ALYVLMVLGFFGFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHhHhhhc
Confidence 3444444555555566555555544443
No 225
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=21.18 E-value=47 Score=23.23 Aligned_cols=39 Identities=18% Similarity=0.403 Sum_probs=27.7
Q ss_pred CccccccCccccCccccccCCCCCccc--hhhhhhhhhcCCCCCccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFH--IDCIDTWLLSNSTCPLCRGNLY 174 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH--~~CI~~Wl~~~~tCP~CR~~l~ 174 (360)
..|+-|-+.+..++... .. -+..|| ..| .+|-.|+.+|.
T Consensus 3 ~~C~~C~~~I~~~~~~v-~a-~~~~wH~~~~C--------F~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRV-TY-NNFSWHASTEC--------FLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEE-EE-TTEEEETTTTT--------SBCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEE-EE-CCCccCCCCCC--------EECCCCCCcCC
Confidence 36999999888643322 22 578899 888 56888988774
No 226
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.90 E-value=14 Score=29.56 Aligned_cols=41 Identities=22% Similarity=0.509 Sum_probs=27.3
Q ss_pred CccccccCccccCccccccCCCCCccchhhhhhhhhcCCCCCcccccccc
Q 038999 126 FDCAVCLCEFSEQDKLRLLPMCSHAFHIDCIDTWLLSNSTCPLCRGNLYI 175 (360)
Q Consensus 126 ~~C~ICle~f~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (360)
..|++|..++... =++.+|..|=.. +.....||-|.++|..
T Consensus 33 ~~CP~Cq~eL~~~--------g~~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQD--------NGHARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEE--------TTEEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceec--------CCEEECccccch-hhccccCcchhhHHHH
Confidence 4899999886542 234446666554 4556679999887743
Done!