BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039000
(262 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P59277|SYP81_ARATH Syntaxin-81 OS=Arabidopsis thaliana GN=SYP81 PE=2 SV=2
Length = 310
Score = 360 bits (925), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 185/268 (69%), Positives = 219/268 (81%), Gaps = 11/268 (4%)
Query: 1 MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGA 60
M+R RDRTEDFKD VR++AVS+GY+ESK+A+ MASFIIHKP+ERS FTKAA KTL+S+
Sbjct: 1 MSRFRDRTEDFKDSVRNSAVSIGYNESKVASTMASFIIHKPKERSPFTKAAFKTLDSIKE 60
Query: 61 LEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLG 120
LE F+L HRKDYV++HRT+EQE+DSIE EV AFIK CKE+IDIL NSI ++EANSKGWLG
Sbjct: 61 LELFMLKHRKDYVDLHRTTEQEKDSIEQEVAAFIKACKEQIDILINSIRNEEANSKGWLG 120
Query: 121 LKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSK 180
L D NAD+IAHKHGVVLILSEKLHSVTAQFDQ+RA RFQD INRAMPRRK KR V K
Sbjct: 121 LPADNFNADSIAHKHGVVLILSEKLHSVTAQFDQLRATRFQDIINRAMPRRKPKR--VIK 178
Query: 181 YADTSNPNKSDMRELDEIQPEPL------TVQQQLLDDETRALQVELTSLLDAVQQTETK 234
A P + + + I+P+ + QQQLLDDET+ALQVEL++LLD +QTETK
Sbjct: 179 EA---TPINTTLGNSESIEPDEIQAQPRRLQQQQLLDDETQALQVELSNLLDGARQTETK 235
Query: 235 MVEMSALNHLMSTHILHQAKQIEHLYEQ 262
MVEMSALNHLM+TH+L QA+QIE LY+Q
Sbjct: 236 MVEMSALNHLMATHVLQQAQQIEFLYDQ 263
>sp|Q4VBI7|STX18_DANRE Syntaxin-18 OS=Danio rerio GN=stx18 PE=2 SV=1
Length = 314
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 122/246 (49%), Gaps = 45/246 (18%)
Query: 40 KPRERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVT 91
+PR+R SF+ A + + ++ L+ F+L HRKDYV E+ R ++ ERD I+ +
Sbjct: 41 RPRQRDSFSCKAREVISNISKLKDFLLQHRKDYVNAGSVMSSEVSRMTDSERDQIDQDAQ 100
Query: 92 AFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQ 151
F++TC E I L++ ++ K + ++V H+ V+ ++ L V
Sbjct: 101 IFMRTCAEAISQLRSEMD------KKQVSMQVK-------DHRAAVLDLIDSYLKGVCKL 147
Query: 152 FDQMRAIRFQDAINRAMPRRKLKR------ETVSKYADTSNPNKS----------DMREL 195
+ + RA+R + R + +++L R T + +D +K + R
Sbjct: 148 YSEQRAVR----VKRVVDKKRLSRLEPEQINTEKRQSDGEENDKPVSDGNVDLWEENRVE 203
Query: 196 DEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQ 255
D++ PE + Q+ + E + L E+ SLLD V+Q E K+VE+S L + S +L Q +
Sbjct: 204 DDLSPEEI----QMFEQENQRLVGEMNSLLDEVRQIEGKVVEISRLQEIFSEKVLQQETE 259
Query: 256 IEHLYE 261
I+ +++
Sbjct: 260 IDSIHQ 265
>sp|Q9P2W9|STX18_HUMAN Syntaxin-18 OS=Homo sapiens GN=STX18 PE=1 SV=1
Length = 335
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 57/261 (21%)
Query: 41 PRERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVTA 92
PR + F+ A + + +G L F+L HRKDY+ E R ++ ERD I+ +
Sbjct: 43 PRPKGDFSSRAREVISHIGKLRDFLLEHRKDYINAYSHTMSEYGRMTDTERDQIDQDAQI 102
Query: 93 FIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQF 152
F++TC E I L+ + E +S+ H+ V+ + + L V +
Sbjct: 103 FMRTCSEAIQQLRTEAH-KEIHSQ------------QVKEHRTAVLDFIEDYLKRVCKLY 149
Query: 153 DQMRAIRFQDAINRAM-----PRRKLK-RETVSKYADTSNPNK----------------- 189
+ RAIR + +++ P K RE+ S + +P+K
Sbjct: 150 SEQRAIRVKRVVDKKRLSKLEPEPNTKTRESTSSEKVSQSPSKDSEENPATEERPEKILA 209
Query: 190 ---------SDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSA 240
D + DE+ PE + Q+ + E + L E+ SL D V+Q E ++VE+S
Sbjct: 210 ETQPELGTWGDGKGEDELSPEEI----QMFEQENQRLIGEMNSLFDEVRQIEGRVVEISR 265
Query: 241 LNHLMSTHILHQAKQIEHLYE 261
L + + +L Q +I+ +++
Sbjct: 266 LQEIFTEKVLQQEAEIDSIHQ 286
>sp|Q5REB4|STX18_PONAB Syntaxin-18 OS=Pongo abelii GN=STX18 PE=2 SV=1
Length = 335
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 57/261 (21%)
Query: 41 PRERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVTA 92
PR + F+ A + + +G L F+L HRKDY+ E R ++ ERD I+ +
Sbjct: 43 PRPKGDFSSRAREVISHIGKLRDFLLEHRKDYINAYSHTMSEYGRMTDTERDQIDQDAQI 102
Query: 93 FIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQF 152
F++TC E I L+ + E +S+ H+ V+ + + L V +
Sbjct: 103 FMRTCSEAIQQLRTEAH-KEIHSQ------------QVKEHRTAVLDFIEDYLKRVCKLY 149
Query: 153 DQMRAIRFQDAINRAM-----PRRKLK-RETVSKYADTSNPNK----------------- 189
+ RAIR + +++ P K RE+ S + +P+K
Sbjct: 150 SEQRAIRVKRVVDKKRLSKLEPEPNTKTRESTSSEKVSRSPSKDSEENPATEERPEKILA 209
Query: 190 ---------SDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSA 240
D + DE+ PE + Q+ + E + L E+ SL D V+Q E ++VE+S
Sbjct: 210 ETQPELGTWGDGKGEDELSPEEI----QMFEQENQRLIGEMNSLFDEVRQIEGRVVEISR 265
Query: 241 LNHLMSTHILHQAKQIEHLYE 261
L + + +L Q +I+ +++
Sbjct: 266 LQEIFTEKVLQQEAEIDSIHQ 286
>sp|Q68FW4|STX18_RAT Syntaxin-18 OS=Rattus norvegicus GN=Stx18 PE=2 SV=1
Length = 334
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 114/256 (44%), Gaps = 48/256 (18%)
Query: 41 PRERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVTA 92
PR + F+ A + + +G L F+L HRK+Y+ E R ++ ERD I+ +
Sbjct: 43 PRPKGDFSSRAREVISHIGKLRDFLLEHRKEYINAYSHTMSEYGRMTDTERDQIDQDAQI 102
Query: 93 FIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQF 152
F++TCK+ I L+ + E +S+ H+ V+ + + L V +
Sbjct: 103 FMRTCKDAIQQLRTEAH-KEIHSQ------------QVKEHRTAVLDFVEDYLKRVCKLY 149
Query: 153 DQMRAIRFQDAINRAM-----PRRKLKRETVSKYADTSN--------PNKSDMRE--LDE 197
+ RAIR + +++ P KR+ + + N P D+ E L E
Sbjct: 150 SEQRAIRVKRVVDKKRLSKLEPEPHTKRKEPASEKSSHNASQDSEEKPAAEDLPEKPLAE 209
Query: 198 IQPEPLTV------------QQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLM 245
QPE T + Q+ + E + L E+ SL D V+Q E K+VE+S L +
Sbjct: 210 SQPELGTWGDGKGEDELSPEEIQMFEQENQRLIGEMNSLFDEVRQIEGKVVEISRLQEIF 269
Query: 246 STHILHQAKQIEHLYE 261
+ +L Q +I+ +++
Sbjct: 270 TEKVLQQETEIDSIHQ 285
>sp|Q8VDS8|STX18_MOUSE Syntaxin-18 OS=Mus musculus GN=Stx18 PE=2 SV=2
Length = 334
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 48/256 (18%)
Query: 41 PRERSSFTKAALKTLESVGALEQFILNHRKDYVEMH--------RTSEQERDSIEHEVTA 92
PR + F+ A + + +G L F+L HRK+Y+ + R ++ ERD I+ +
Sbjct: 43 PRPKGDFSSRAREVISHIGKLRDFLLEHRKEYINAYSHTMSDYGRMTDTERDQIDQDAQI 102
Query: 93 FIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQF 152
FI+TC E I L+ + E +S+ H+ V+ + + L V +
Sbjct: 103 FIRTCSEAIHQLRTEAH-KEIHSQ------------QVKEHRTAVLDFVDDYLKRVCKLY 149
Query: 153 DQMRAIRFQDAINR-------AMPRRKLKRETVSKYADTSNPNKSDMRELDEIQPEPLTV 205
+ RAIR + +++ P K K T K ++ + +E+ +PL
Sbjct: 150 SEQRAIRVKRVVDKKRLSKLEPEPHTKRKDSTSEKAPQNASQDSEGKPAAEELPEKPLAE 209
Query: 206 QQ--------------------QLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLM 245
Q Q+ + E + L E+ SL D V+Q E K+VE+S L +
Sbjct: 210 SQPELGTWGDGKGEDELSPEEIQMFEQENQRLIGEMNSLFDEVRQIEGKVVEISRLQEIF 269
Query: 246 STHILHQAKQIEHLYE 261
+ +L Q +I+ +++
Sbjct: 270 TEKVLQQETEIDSIHQ 285
>sp|O94531|UFE1_SCHPO Syntaxin ufe1 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=ufe1 PE=1 SV=1
Length = 319
Score = 38.1 bits (87), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 16/115 (13%)
Query: 80 EQERDSIEHEVTAFIKTCKEKIDILQNSINDDEA---NSKGWL-GLK--VDRSNADT-IA 132
E +RD IEHEV++ I +C +I LQ + + ++ GWL GL+ S +T +A
Sbjct: 89 EVQRDEIEHEVSSAISSCIHQIAKLQEIVKEQQSQIPKKSGWLQGLRDPSKLSKKETLVA 148
Query: 133 HKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNP 187
H V+ L +L V++ ++ +R + R + KR S + T NP
Sbjct: 149 HHSSVLWYLQSELSDVSSVLYHLQDLRLK--------RGQEKRNIASDFL-TKNP 194
>sp|Q0P5H9|TTC5_BOVIN Tetratricopeptide repeat protein 5 OS=Bos taurus GN=TTC5 PE=2 SV=1
Length = 440
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 169 PRRKLKRETVSKYADTSNP---NKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLL 225
P L R T+ KY + S LD PEP +QQLLD TR LTS L
Sbjct: 224 PDLHLNRATLHKYEENYGEALEGFSRAAALDPAWPEPWQREQQLLDFLTR-----LTSFL 278
Query: 226 DAVQQTETKMVEMSALNHLMSTHI 249
++ + +TK ++ S L +L H+
Sbjct: 279 ESKGKVKTKKLQ-SMLGNLRPAHL 301
>sp|Q99LG4|TTC5_MOUSE Tetratricopeptide repeat protein 5 OS=Mus musculus GN=Ttc5 PE=1
SV=2
Length = 440
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 169 PRRKLKRETVSKYADTSNP---NKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLL 225
P L R T+ KY ++ S LD + PEP +QQLL+ +R LTSLL
Sbjct: 224 PDLHLNRATLHKYEESYGEALEGFSQAAALDPVWPEPQQREQQLLEFLSR-----LTSLL 278
Query: 226 DAVQQTETKMVEMSALNHLMSTHI 249
++ +T+ K ++ S L L H+
Sbjct: 279 ESKGKTKPKKLQ-SMLGSLRPAHL 301
>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4
Length = 3122
Score = 33.1 bits (74), Expect = 2.2, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 86/214 (40%), Gaps = 25/214 (11%)
Query: 30 AAIMASFIIHKPRERSSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHE 89
A + FI R+ + + A+K E++G ++ E+ + ++ E
Sbjct: 1675 AKSLGEFIKELARDAEAVNEKAIKLNETLGTRDEAF--------------ERNLEGLQKE 1720
Query: 90 VTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKL---- 145
+ IK + K Q I +DE + L KV + ++ + L EKL
Sbjct: 1721 IDQMIKELRRKNLETQKEIAEDELVAAEALLKKVKKLFGESRGENEEMEKDLREKLADYK 1780
Query: 146 HSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMRELDEIQPEPLTV 205
+ V +D +R D I A + ++ ++ +S R+++ E
Sbjct: 1781 NKVDDAWDLLREA--TDKIREANRLFAVNQKNMTALEKKKEAVESGKRQIENTLKE---- 1834
Query: 206 QQQLLDDETRALQVELTSLLDAVQQTETKMVEMS 239
+LD+ R L E+ S++D V+ +TK+ MS
Sbjct: 1835 GNDILDEANR-LADEINSIIDYVEDIQTKLPPMS 1867
>sp|B9LP84|PYRF_HALLT Orotidine 5'-phosphate decarboxylase OS=Halorubrum lacusprofundi
(strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
GN=pyrF PE=3 SV=1
Length = 276
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 17/101 (16%)
Query: 114 NSKGWLGLKVDRSNADTIAHKHG--VVLILSEK---LHSVTAQF----DQMRAIRFQDAI 164
++ GW L+ +TIA+ HG V ++L K + + T Q+ D+ AI +
Sbjct: 67 DADGWRALE------ETIAYAHGKDVPVLLDAKRADIGNTTRQYAAALDRADAITVNPYL 120
Query: 165 NRAMPRRKLKRE--TVSKYADTSNPNKSDMRELDEIQPEPL 203
R + L RE V TSNP SD+++L+ EPL
Sbjct: 121 GRDSLQPFLDREEKGVFVLCRTSNPGGSDLQDLELASGEPL 161
>sp|Q9C0D2|K1731_HUMAN Centrosomal protein KIAA1731 OS=Homo sapiens GN=KIAA1731 PE=2 SV=4
Length = 2601
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 38 IHKPRERSSFTKAALKTLESVGALEQFILNHRKDYVE-MHRTSEQERDSIEHEVTAFIKT 96
I KPR S+ T L + G+L++ + +K ++E H+ ++ R+ I + IKT
Sbjct: 2458 IEKPRTASTETPRRLTPVP--GSLQEAFIKRKKSFMERSHQRQKEIRNKIHVSENSQIKT 2515
Query: 97 CKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVL 139
KEK I +S++ + +K DR + H+ G+ L
Sbjct: 2516 VKEKPSI-SSSVSRLKGVNKVRASFPEDRKTTQALRHQRGLRL 2557
>sp|Q04607|CHLN_PLEBO Light-independent protochlorophyllide reductase subunit N
OS=Plectonema boryanum GN=chlN PE=3 SV=1
Length = 467
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 19/185 (10%)
Query: 71 DYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADT 130
DY E+ R EQ + V FI TC +I + + S+ + + V R+N
Sbjct: 83 DYNELKRLCEQIKRDRNPSVIVFIGTCTTEIIKMDLEGLAPKLESEIGIPIVVARANGLD 142
Query: 131 IAHKHG---VVLILSEKL--HSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTS 185
A G V+ ++++ + TA+ D+ Q +N + +KRE S+Y D
Sbjct: 143 YAFTQGEDTVLAAMAQRCPTQAPTAEADKEERNAIQKLMNFGRKQEDVKREE-SEYVD-- 199
Query: 186 NPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVE----MSAL 241
+P + P+P+ Q L E + ++++ L A + TE ++E +S +
Sbjct: 200 HPPLVMFGSV----PDPIVTQLSL---ELKHQGIKVSGWLPAKRYTELPVIEEGYYVSGV 252
Query: 242 NHLMS 246
N +S
Sbjct: 253 NPFLS 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,199,298
Number of Sequences: 539616
Number of extensions: 3082437
Number of successful extensions: 11873
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 11829
Number of HSP's gapped (non-prelim): 144
length of query: 262
length of database: 191,569,459
effective HSP length: 115
effective length of query: 147
effective length of database: 129,513,619
effective search space: 19038501993
effective search space used: 19038501993
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)