Query 039000
Match_columns 262
No_of_seqs 108 out of 234
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3894 SNARE protein Syntaxin 100.0 1.8E-34 4E-39 257.2 24.9 241 5-261 1-267 (316)
2 KOG0812 SNARE protein SED5/Syn 99.9 5.7E-22 1.2E-26 174.9 24.3 234 3-261 2-262 (311)
3 PF10496 Syntaxin-18_N: SNARE- 99.8 4.8E-20 1E-24 138.9 6.6 80 5-86 1-87 (87)
4 KOG0809 SNARE protein TLG2/Syn 98.4 3.5E-05 7.5E-10 69.4 19.0 184 46-259 58-251 (305)
5 KOG0810 SNARE protein Syntaxin 98.1 0.00069 1.5E-08 62.0 20.4 201 43-260 34-240 (297)
6 KOG0811 SNARE protein PEP12/VA 97.9 0.0018 3.9E-08 58.4 19.2 194 42-261 14-215 (269)
7 COG5325 t-SNARE complex subuni 97.4 0.034 7.3E-07 50.0 18.8 58 202-259 171-228 (283)
8 PF00804 Syntaxin: Syntaxin; 96.7 0.021 4.6E-07 42.9 9.4 94 45-155 3-102 (103)
9 PF11416 Sed5p: Integral membr 95.9 0.0029 6.3E-08 37.4 0.6 21 1-21 1-21 (29)
10 cd00193 t_SNARE Soluble NSF (N 95.9 0.03 6.4E-07 37.9 5.8 39 223-261 3-41 (60)
11 COG5074 t-SNARE complex subuni 95.8 0.029 6.2E-07 49.4 6.4 49 214-262 173-221 (280)
12 smart00397 t_SNARE Helical reg 95.7 0.054 1.2E-06 37.2 6.7 42 220-261 6-47 (66)
13 PF05739 SNARE: SNARE domain; 94.9 0.12 2.5E-06 35.8 6.1 37 225-261 3-39 (63)
14 smart00503 SynN Syntaxin N-ter 92.9 3.3 7.2E-05 31.7 13.1 104 45-160 4-113 (117)
15 cd00179 SynN Syntaxin N-termin 90.9 7.3 0.00016 31.3 13.9 112 45-167 2-119 (151)
16 PF09177 Syntaxin-6_N: Syntaxi 87.5 10 0.00023 28.6 11.3 96 45-148 1-96 (97)
17 PF05384 DegS: Sensor protein 76.0 45 0.00098 27.8 10.9 77 48-158 79-155 (159)
18 cd07925 LigA_like_1 The A subu 56.8 18 0.00038 28.2 3.8 43 46-89 8-56 (106)
19 cd07921 PCA_45_Doxase_A_like S 56.0 17 0.00037 28.3 3.6 59 47-106 9-73 (106)
20 smart00806 AIP3 Actin interact 53.6 2.2E+02 0.0048 27.6 11.4 116 44-163 212-330 (426)
21 KOG3202 SNARE protein TLG1/Syn 50.9 1.8E+02 0.0039 25.9 18.6 97 44-154 5-102 (235)
22 PRK13378 protocatechuate 4,5-d 49.2 28 0.00061 27.6 3.9 43 46-89 19-67 (117)
23 PF14523 Syntaxin_2: Syntaxin- 45.8 1.2E+02 0.0026 22.4 13.5 95 51-164 5-99 (102)
24 PF09036 Bcr-Abl_Oligo: Bcr-Ab 45.6 73 0.0016 23.2 5.2 21 86-110 31-51 (79)
25 TIGR02792 PCA_ligA protocatech 42.8 47 0.001 26.3 4.2 43 46-89 13-61 (117)
26 cd07924 PCA_45_Doxase_A The A 41.2 53 0.0012 26.2 4.4 42 46-88 16-63 (121)
27 PRK13377 protocatechuate 4,5-d 40.2 54 0.0012 26.4 4.3 43 46-89 19-67 (129)
28 cd07923 Gallate_dioxygenase_C 39.5 35 0.00076 26.0 3.0 39 49-89 3-48 (94)
29 PRK13379 protocatechuate 4,5-d 37.6 59 0.0013 25.8 4.1 43 46-89 20-68 (119)
30 PF03915 AIP3: Actin interacti 37.2 3.6E+02 0.0077 26.2 10.2 111 44-158 208-321 (424)
31 PF08671 SinI: Anti-repressor 36.5 43 0.00094 20.0 2.5 23 46-68 7-29 (30)
32 PF10146 zf-C4H2: Zinc finger- 35.5 2.8E+02 0.0061 24.5 8.6 55 207-261 34-88 (230)
33 PF11932 DUF3450: Protein of u 34.4 3E+02 0.0066 24.2 8.8 55 204-258 62-116 (251)
34 PF09278 MerR-DNA-bind: MerR, 31.8 1.6E+02 0.0035 19.7 6.4 56 46-109 5-60 (65)
35 PRK02119 hypothetical protein; 31.7 1.7E+02 0.0036 21.0 5.4 34 226-259 9-42 (73)
36 PF04102 SlyX: SlyX; InterPro 31.5 1.9E+02 0.004 20.4 6.1 33 227-259 5-37 (69)
37 PRK04325 hypothetical protein; 31.3 1.8E+02 0.004 20.8 5.6 32 228-259 11-42 (74)
38 PF08580 KAR9: Yeast cortical 31.0 4.5E+02 0.0097 27.2 10.3 108 46-164 43-158 (683)
39 COG1256 FlgK Flagellar hook-as 29.0 5.5E+02 0.012 25.8 10.3 83 43-146 132-215 (552)
40 PF15188 CCDC-167: Coiled-coil 28.4 2.5E+02 0.0055 20.9 6.0 40 54-93 3-48 (85)
41 PF05553 DUF761: Cotton fibre 28.2 84 0.0018 19.8 2.9 21 83-103 2-22 (38)
42 PRK00736 hypothetical protein; 27.7 2.1E+02 0.0046 20.1 5.3 32 228-259 7-38 (68)
43 PF04518 Effector_1: Effector 27.5 3E+02 0.0065 26.3 7.7 63 80-158 206-268 (379)
44 PF11932 DUF3450: Protein of u 25.4 4.6E+02 0.01 23.0 9.1 34 204-237 41-74 (251)
45 PRK00295 hypothetical protein; 23.8 2.7E+02 0.0058 19.6 5.8 32 228-259 7-38 (68)
46 PRK02793 phi X174 lysis protei 20.8 3.2E+02 0.007 19.4 6.0 32 228-259 10-41 (72)
47 PF10046 BLOC1_2: Biogenesis o 20.6 3.8E+02 0.0082 20.2 7.7 45 206-250 22-66 (99)
48 PF04849 HAP1_N: HAP1 N-termin 20.5 5E+02 0.011 24.1 7.6 61 201-261 163-241 (306)
49 PF00804 Syntaxin: Syntaxin; 20.4 2.8E+02 0.0061 19.9 5.1 33 216-248 4-36 (103)
50 cd07639 BAR_ACAP1 The Bin/Amph 20.2 5.7E+02 0.012 22.1 8.2 31 80-110 8-38 (200)
No 1
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-34 Score=257.23 Aligned_cols=241 Identities=26% Similarity=0.364 Sum_probs=190.5
Q ss_pred cCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhcCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhhhccCCCChHHHh
Q 039000 5 RDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERD 84 (262)
Q Consensus 5 ~D~T~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~~mtd~erD 84 (262)
+|+|+.|+++|++++...+.+.++-+.+ ++....++.++++|.+.|.+...+|++|..||.++|++|++. .|||.+||
T Consensus 1 ~d~t~~fk~sv~~i~~~~k~~~~~~~~~-~~~~~~~~~~~~~f~~~a~~~~~~i~~l~~fl~e~rk~y~d~-~mtd~ekd 78 (316)
T KOG3894|consen 1 SDITPIFKASVATVDDARKAQNGGDAHV-ERKQEDFPNPKEDFEKFADEVIKEIARLRKFLLEHRKDYKDF-RMTDAEKD 78 (316)
T ss_pred CcchHHHHHHHHHHHHhccccccCCCCc-chhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHH
Confidence 6999999999999997654333321111 222456788999999999999999999999999999999988 99999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 85 SIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAI 164 (262)
Q Consensus 85 ~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~ 164 (262)
.||.++..+|+.|.+.|..|.+++... .+.+...|+.+|+..|..+++.+++.+......|+++.+
T Consensus 79 ~id~e~~~fi~~~t~~~~~l~~~~~~~--------------h~~~~~~~~~~i~~~l~~l~k~~~~~~s~~~k~rV~~~l 144 (316)
T KOG3894|consen 79 EIDQECRLFIQQYTEKIEQLINYEMEE--------------HSLQLERFQDAVLRWLGILLKRNENTYSVQHKQRVENEL 144 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999998853 245778999999999999999999999999999999998
Q ss_pred HHhcc-hhh-hhhh---cc--c----CC----CC-----CCCCC----CCCcccccCC--CCchhHHHHHHHHHHHHHHH
Q 039000 165 NRAMP-RRK-LKRE---TV--S----KY----AD-----TSNPN----KSDMRELDEI--QPEPLTVQQQLLDDETRALQ 218 (262)
Q Consensus 165 e~~~~-~~~-l~~~---~~--~----~~----~~-----~~~s~----~~~~~~~~~l--s~~~~q~Q~Q~~E~En~~ll 218 (262)
..... .+. +... +. . .. +. .++-+ +++....++. .++++++|+|+||+||..|+
T Consensus 145 ~~~rl~vl~~~~~~~~~s~~~~~~~~~~~~~~~en~~~~~~~~~~s~~~~e~~~~~~~~~e~~~s~e~~Q~~E~En~~l~ 224 (316)
T KOG3894|consen 145 SEKRLSVLACLDIKYVESKFQTIQNERLSKDNKENTLSERADDNRSLADSELGQDEEKHYEDPLSKEQVQLLETENQRLL 224 (316)
T ss_pred HHHHHhhHhhcchhhccCchhhhhhhcchhhhHHHHHhhcchhhhcccchhhcCcccccCCccccHHHHHHHHHHHHHHH
Confidence 88742 111 1100 00 0 00 00 00000 1111111111 12344578999999999999
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000 219 VELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE 261 (262)
Q Consensus 219 ~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~ 261 (262)
+.+++++++|++||+.|+||++||+.|++||++|.++||.|||
T Consensus 225 ~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d 267 (316)
T KOG3894|consen 225 NELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHD 267 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997
No 2
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.7e-22 Score=174.91 Aligned_cols=234 Identities=18% Similarity=0.241 Sum_probs=159.0
Q ss_pred cccCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhcCCCCCCCHHHHHHHHHHHhHHHHHHHH-----HHhhhhhhccCC
Q 039000 3 RIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQFI-----LNHRKDYVEMHR 77 (262)
Q Consensus 3 ~~~D~T~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~F~keA~~I~~~I~~L~~fL-----~~~R~~Yl~~~~ 77 (262)
++.|||.+|++||+..+.....+... ...+...+...+.++|.+.|+.|++.|...-..| ..+|+..++
T Consensus 2 ~~rDRT~Ef~~~~~s~~~r~~~~~~~---~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~--- 75 (311)
T KOG0812|consen 2 SFRDRTSEFQAAVKSLKKRNATRGVN---QADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFD--- 75 (311)
T ss_pred CcchhhHHHHHHHHHHHHHhhccccc---cCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---
Confidence 57899999999999988743211110 0001112334667899999999999999665554 235777666
Q ss_pred CChHHHhhhHHHHHHH---HHHHHHHHHHHHHHhhhhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 78 TSEQERDSIEHEVTAF---IKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQ 154 (262)
Q Consensus 78 mtd~erD~ID~e~~~~---i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~ 154 (262)
+.--+|++.+-.+ |..++..|..|+........ . .+.+...|..+||..|..+|.++++.|++
T Consensus 76 ---Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn-~----------s~~~~~~Hs~~vV~~Lqs~la~is~~fk~ 141 (311)
T KOG0812|consen 76 ---DRPVEIQELTFIIKQDITSLNSQIAQLQEIVKANGN-L----------SNKQLVQHSKNVVVSLQSKLANISKDFKD 141 (311)
T ss_pred ---CcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhcc-c----------cchHhhhhhHHHHHHHHHHHHhhhhhHHH
Confidence 3333555554444 88899999999988743110 0 13567899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhhhhh-cccCC-C-CCCCC---CC-------------CCcccccCCCCchhHHHHHHHHHHHH
Q 039000 155 MRAIRFQDAINRAMPRRKLKRE-TVSKY-A-DTSNP---NK-------------SDMRELDEIQPEPLTVQQQLLDDETR 215 (262)
Q Consensus 155 ~~e~R~~r~~e~~~~~~~l~~~-~~~~~-~-~~~~s---~~-------------~~~~~~~~ls~~~~q~Q~Q~~E~En~ 215 (262)
+.|+|.++.++.+.++-+.... +..++ | .++++ ++ .........+ ..-|+|++++++-
T Consensus 142 VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~-~~qqqQm~ll~es-- 218 (311)
T KOG0812|consen 142 VLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDSS-NPQQQQMALLDES-- 218 (311)
T ss_pred HHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCCC-CCHHHHHHHHHHH--
Confidence 9999999998888654332221 11111 1 01000 00 0001111111 1125677778666
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000 216 ALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE 261 (262)
Q Consensus 216 ~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~ 261 (262)
.+|.+++.+.+++||++|.||++||++||.||++|+|.|.||=|
T Consensus 219 --~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~ 262 (311)
T KOG0812|consen 219 --DEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDD 262 (311)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34599999999999999999999999999999999999999843
No 3
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=99.81 E-value=4.8e-20 Score=138.93 Aligned_cols=80 Identities=28% Similarity=0.348 Sum_probs=65.5
Q ss_pred cCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhcCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhhhc-------cCC
Q 039000 5 RDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQFILNHRKDYVE-------MHR 77 (262)
Q Consensus 5 ~D~T~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~-------~~~ 77 (262)
|||||+|++||++++...+..+. ..........+..++|+|+|||++|++||++|+.||.+||++||+ .+.
T Consensus 1 ~DlT~lF~~~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~F~keA~~i~~~I~~L~~fL~~iR~~YL~~~~~~~~~~~ 78 (87)
T PF10496_consen 1 TDLTPLFKACVKIIRTENKASGK--APSDSSKIRPKTKPKDEFLKEAYRILSHITSLRKFLKSIRKAYLSTSSHLSSSSS 78 (87)
T ss_pred CCccHHHHHHHHHHHhhcccccc--ccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 79999999999999976532221 112223345566889999999999999999999999999999999 679
Q ss_pred CChHHHhhh
Q 039000 78 TSEQERDSI 86 (262)
Q Consensus 78 mtd~erD~I 86 (262)
||+.|||+|
T Consensus 79 ~t~~erD~i 87 (87)
T PF10496_consen 79 MTDAERDDI 87 (87)
T ss_pred CCccccCCC
Confidence 999999987
No 4
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=3.5e-05 Score=69.38 Aligned_cols=184 Identities=14% Similarity=0.214 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH-------hhhhhhccCCCChHHHhhhHHHHH---HHHHHHHHHHHHHHHHhhhhcccc
Q 039000 46 SFTKAALKTLESVGALEQFILN-------HRKDYVEMHRTSEQERDSIEHEVT---AFIKTCKEKIDILQNSINDDEANS 115 (262)
Q Consensus 46 ~F~keA~~I~~~I~~L~~fL~~-------~R~~Yl~~~~mtd~erD~ID~e~~---~~i~~~~~~I~~L~~~~~~~~~~~ 115 (262)
.|.--+-+|-..+...+.-+.+ |=.+=|++.. ++.++|+..+. .+++.|...|..+...-+.
T Consensus 58 ~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~---ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~----- 129 (305)
T KOG0809|consen 58 AWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKR---EDEHEIEELTQEITQLLQKCQKLIQRLSASLNQ----- 129 (305)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----
Confidence 4555566666666555555433 2222233222 23445555444 4488888888877754431
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcccCCCCCCCCCCCCcccc
Q 039000 116 KGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMREL 195 (262)
Q Consensus 116 ~~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~ 195 (262)
..+...--+.++..+|-..|...+..|...|...+++...++.. +.... .+..+..+...+
T Consensus 130 ----------~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~-----~~~~e----~~~~~~~~~~dd 190 (305)
T KOG0809|consen 130 ----------LSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREEN-----SQEYE----DSLDNTVDLPDD 190 (305)
T ss_pred ----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhc-----ccchh----hhccccccCcch
Confidence 11222346678888999999999999999999999999666531 11000 000011111123
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039000 196 DEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHL 259 (262)
Q Consensus 196 ~~ls~~~~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i 259 (262)
+.+++.-.|+|++++.+.|++ +...+-++|.++-++|.|++.+|..|..+|-+|+..||||
T Consensus 191 ~d~~~~~~qe~ql~~~e~~~~---~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRI 251 (305)
T KOG0809|consen 191 EDFSDRTFQEQQLMLFENNEE---VVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRI 251 (305)
T ss_pred hhhhhhhHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhe
Confidence 444444444433333344565 3667888999999999999999999999999999999997
No 5
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00069 Score=61.99 Aligned_cols=201 Identities=12% Similarity=0.116 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHhHHHHHHHHHHhhhhhhcc-CCCC--hHHHhhhHHHHHHHHHH---HHHHHHHHHHHhhhhccccc
Q 039000 43 ERSSFTKAALKTLESVGALEQFILNHRKDYVEM-HRTS--EQERDSIEHEVTAFIKT---CKEKIDILQNSINDDEANSK 116 (262)
Q Consensus 43 ~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~-~~mt--d~erD~ID~e~~~~i~~---~~~~I~~L~~~~~~~~~~~~ 116 (262)
.-+.|..++..|...|..|...+.+++...-.. +..- ..-|.+++..+..+.+. +..+|+.|+....... ..+
T Consensus 34 ~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~-~~~ 112 (297)
T KOG0810|consen 34 NLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADE-TQN 112 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccC
Confidence 346899999999999999999998887776221 1222 23367777776666443 4444455544433211 000
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcccCCCCCCCCCCCCccccc
Q 039000 117 GWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMRELD 196 (262)
Q Consensus 117 ~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~ 196 (262)
+. | .....-..+. + .|+.+|.++-..|...+..--.+-+++=.++....+...+. .+ ..+...+.
T Consensus 113 ~~-~----~~~r~rrtq~-~---~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~-de-----~ie~~ie~ 177 (297)
T KOG0810|consen 113 RS-S----AGLRTRRTQT-S---ALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETT-DE-----EIEEMIES 177 (297)
T ss_pred CC-C----ccchhHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCC-hH-----HHHHHHHC
Confidence 00 0 0111111222 2 23366666666666666543333333322111111110000 00 00000000
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 197 EIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY 260 (262)
Q Consensus 197 ~ls~~~~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~ 260 (262)
.-+..-++-=++ --.+-...|++.+.+.++|..+|++|.|+..||.-++..|..|+++||+|-
T Consensus 178 g~~~~f~~~~i~-~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE 240 (297)
T KOG0810|consen 178 GGSEVFTQKAIQ-DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIE 240 (297)
T ss_pred CChHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 000111111111 123457889999999999999999999999999999999999999999984
No 6
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0018 Score=58.44 Aligned_cols=194 Identities=11% Similarity=0.144 Sum_probs=111.9
Q ss_pred CCCCHHHHHHHHHHHhHHHHHHHHHHhhhhh--hccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 039000 42 RERSSFTKAALKTLESVGALEQFILNHRKDY--VEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWL 119 (262)
Q Consensus 42 ~~~d~F~keA~~I~~~I~~L~~fL~~~R~~Y--l~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~ 119 (262)
..+..|..-+..|...|..+..-...+-+-- +.....|.+.||.+... ...|++.++.+....+.-.. .
T Consensus 14 ~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~----~~~~~~~vkdt~~~lke~~~-~---- 84 (269)
T KOG0811|consen 14 EEPFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQE----RLNANQLVKDTSALLKEIDT-L---- 84 (269)
T ss_pred CCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-h----
Confidence 3456888888888888875554433322111 23355667788888877 66666666666666553100 0
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcccCCCCCCCCCCCCcccccCCC
Q 039000 120 GLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMRELDEIQ 199 (262)
Q Consensus 120 ~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~ls 199 (262)
.......+......-|..-...+-+.|..++..=..+.+ ... ..+.+... +.. +.+.....+.+
T Consensus 85 ------~~~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek-~~~----~a~~s~~s-~~~----~~~~~~~~~~~ 148 (269)
T KOG0811|consen 85 ------RLESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK-IPM----VARGSQNS-QQL----DEESPRVDELS 148 (269)
T ss_pred ------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc-ccc----cccccccc-hhh----hhhhhhhhhhh
Confidence 011223556667777777777777777777655444442 000 00100000 000 00000001111
Q ss_pred ---C---chhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000 200 ---P---EPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE 261 (262)
Q Consensus 200 ---~---~~~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~ 261 (262)
+ .+.++|.|..| +-...+...+.+..++++||+-|.|+.++|..|+.+|.+|++.||.|-+
T Consensus 149 ~~~~~~~~q~e~~~q~~e-~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~ 215 (269)
T KOG0811|consen 149 NNGSQSQQQLEEQAQDNE-ILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEA 215 (269)
T ss_pred ccchhhhhHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Confidence 1 11122233332 2334566788999999999999999999999999999999999999854
No 7
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.034 Score=50.01 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039000 202 PLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHL 259 (262)
Q Consensus 202 ~~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i 259 (262)
...+|..+..+|-++=+...+.+..+|.+|.+.|.|+.++|..|..-|-+|++.+++|
T Consensus 171 ~~lqq~~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrI 228 (283)
T COG5325 171 QTLQQQGLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRI 228 (283)
T ss_pred hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3445677777777776667899999999999999999999999999999999999998
No 8
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=96.68 E-value=0.021 Score=42.89 Aligned_cols=94 Identities=11% Similarity=0.220 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHHhhhhhhccC-CCC-h-HHHhhhHHHHHHH---HHHHHHHHHHHHHHhhhhccccccc
Q 039000 45 SSFTKAALKTLESVGALEQFILNHRKDYVEMH-RTS-E-QERDSIEHEVTAF---IKTCKEKIDILQNSINDDEANSKGW 118 (262)
Q Consensus 45 d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~-~mt-d-~erD~ID~e~~~~---i~~~~~~I~~L~~~~~~~~~~~~~~ 118 (262)
+.|..++.+|...|..+..-|.+++.-|-..- ... | ..+++||..+..+ ++.|...|+.|+......
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~------- 75 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDS------- 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------
Confidence 48999999999999999999877666654431 111 1 4677777655544 888888888888764310
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 119 LGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQM 155 (262)
Q Consensus 119 ~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~ 155 (262)
....|..+++..+...+..+++.|.++
T Consensus 76 ----------~~~~~~~~~~ri~~nq~~~L~~kf~~~ 102 (103)
T PF00804_consen 76 ----------EGEEPSSNEVRIRKNQVQALSKKFQEV 102 (103)
T ss_dssp ----------HCTT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------cccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 012356677777777777777777765
No 9
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery. This allows for participation in late fusion steps []. ; PDB: 1MQS_B.
Probab=95.89 E-value=0.0029 Score=37.45 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=16.8
Q ss_pred CCcccCCcHHHHHHHHHHHhh
Q 039000 1 MARIRDRTEDFKDVVRHTAVS 21 (262)
Q Consensus 1 m~~~~D~T~~F~~~v~~~~~~ 21 (262)
|.++.|||.+|++||.++.+.
T Consensus 1 m~~IqdRT~EFqqcV~s~~k~ 21 (29)
T PF11416_consen 1 MTSIQDRTIEFQQCVSSYKKR 21 (29)
T ss_dssp H-HHHB-HHHHHHHHHHHHHH
T ss_pred CcchhHhhHHHHHHHHHHHHH
Confidence 456899999999999999875
No 10
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=95.88 E-value=0.03 Score=37.94 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000 223 SLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE 261 (262)
Q Consensus 223 ~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~ 261 (262)
++.+.+..++++|.++..|+..++..|.+|++.|++|-+
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~ 41 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIED 41 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999853
No 11
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.76 E-value=0.029 Score=49.38 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=44.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 039000 214 TRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYEQ 262 (262)
Q Consensus 214 n~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~~ 262 (262)
-.-.|.+.+.+...+.+||++|.||..|++-+++.|.+|.+++|.|-++
T Consensus 173 AktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~ 221 (280)
T COG5074 173 AKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKN 221 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhh
Confidence 4566778888999999999999999999999999999999999998653
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=95.73 E-value=0.054 Score=37.24 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=38.2
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000 220 ELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE 261 (262)
Q Consensus 220 ~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~ 261 (262)
.+..+...++.++.+|.++.+++..+...|.+|++.|++|-+
T Consensus 6 ~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~ 47 (66)
T smart00397 6 MEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIED 47 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777889999999999999999999999999999999854
No 13
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=94.85 E-value=0.12 Score=35.79 Aligned_cols=37 Identities=8% Similarity=0.228 Sum_probs=34.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000 225 LDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE 261 (262)
Q Consensus 225 l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~ 261 (262)
-+.+..|+++|.++.+++..+...|.+|++.|++|-+
T Consensus 3 d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~ 39 (63)
T PF05739_consen 3 DEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIED 39 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHH
Confidence 4678999999999999999999999999999999843
No 14
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=92.92 E-value=3.3 Score=31.70 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHHhhhhhhccCCCCh---HHH---hhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 039000 45 SSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSE---QER---DSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGW 118 (262)
Q Consensus 45 d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~~mtd---~er---D~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~ 118 (262)
+.|..+|..|..+|..+..-+..++.-+-....-++ .-| +.+-.++....+.|...|+.|+........
T Consensus 4 ~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~----- 78 (117)
T smart00503 4 DEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRA----- 78 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc-----
Confidence 489999999999999999888777665544422222 223 344455566688888888888765432100
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 119 LGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRF 160 (262)
Q Consensus 119 ~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~ 160 (262)
.......-+..++.-|...+..+-..|...+..-.
T Consensus 79 -------~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 113 (117)
T smart00503 79 -------SGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYR 113 (117)
T ss_pred -------cCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122346678888899999999999998887643
No 15
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=90.90 E-value=7.3 Score=31.33 Aligned_cols=112 Identities=14% Similarity=0.155 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHHhhhhhhcc---CCCChHHH---hhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 039000 45 SSFTKAALKTLESVGALEQFILNHRKDYVEM---HRTSEQER---DSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGW 118 (262)
Q Consensus 45 d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~---~~mtd~er---D~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~ 118 (262)
++|..++..|...|..+..-+..++.-+-.. ..=++.-| +.+-.++...++.|...|+.|+....... ..
T Consensus 2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~-~~--- 77 (151)
T cd00179 2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNE-AL--- 77 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc---
Confidence 4799999999999999998876665554333 21122234 34445556667788888888876543210 00
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039000 119 LGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRA 167 (262)
Q Consensus 119 ~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~ 167 (262)
+.......+...+.-|...+..+-..|...+..--++.+++-
T Consensus 78 -------~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i 119 (151)
T cd00179 78 -------NGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERI 119 (151)
T ss_pred -------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012233566677778899999999999988876555554443
No 16
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=87.47 E-value=10 Score=28.55 Aligned_cols=96 Identities=13% Similarity=0.186 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHHhhhhhhccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccc
Q 039000 45 SSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVD 124 (262)
Q Consensus 45 d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~ 124 (262)
|+|.--+.+|...|..|..++...+.- ...+. +..+.+..-.+....++.+...|..|+..+..-.....+| |
T Consensus 1 DPF~~v~~ev~~sl~~l~~~~~~~~~~-~~~~~-~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF-~---- 73 (97)
T PF09177_consen 1 DPFFVVKDEVQSSLDRLESLYRRWQRL-RSDTS-SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF-N---- 73 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH-TTHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-T----
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHh-cccCC-CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-C----
Confidence 789999999999999999998874333 33333 6677888888888889999999999999987521111122 3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Q 039000 125 RSNADTIAHKHGVVLILSEKLHSV 148 (262)
Q Consensus 125 ~~~~~~~~Hr~~Vl~~L~~~L~~v 148 (262)
.......-|...|.-++..++.+
T Consensus 74 -l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 74 -LSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhc
Confidence 13333444445555566666554
No 17
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=76.03 E-value=45 Score=27.84 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=52.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhhhccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccc
Q 039000 48 TKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSN 127 (262)
Q Consensus 48 ~keA~~I~~~I~~L~~fL~~~R~~Yl~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~~~~ 127 (262)
.|+||+=++.+.--...+.+ |-.+|. .-||+++.. ++.+..-|..-+.
T Consensus 79 ik~AYe~A~~lQ~~L~~~re-~E~qLr------~rRD~LErr----l~~l~~tierAE~--------------------- 126 (159)
T PF05384_consen 79 IKEAYEEAHELQVRLAMLRE-REKQLR------ERRDELERR----LRNLEETIERAEN--------------------- 126 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHH------HHHHHHHHH----HHHHHHHHHHHHH---------------------
Confidence 67777777777655555555 666677 777777766 5555544443333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 128 ADTIAHKHGVVLILSEKLHSVTAQFDQMRAI 158 (262)
Q Consensus 128 ~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~ 158 (262)
+...-.-|+.||..-|+.|+..+.+++..
T Consensus 127 --l~sqi~vvl~yL~~dl~~v~~~~e~~~~~ 155 (159)
T PF05384_consen 127 --LVSQIGVVLNYLSGDLQQVSEQIEDAQQK 155 (159)
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 23344567889999999999999888754
No 18
>cd07925 LigA_like_1 The A subunit of Uncharacterized proteins with similarity to Protocatechuate 4,5-dioxygenase (LigAB). The proteins of unknown function in this subfamily are similar to the A subunit of the Protocatechuate (PCA) 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds.
Probab=56.81 E-value=18 Score=28.23 Aligned_cols=43 Identities=7% Similarity=0.264 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhHHHHHH------HHHHhhhhhhccCCCChHHHhhhHHH
Q 039000 46 SFTKAALKTLESVGALEQ------FILNHRKDYVEMHRTSEQERDSIEHE 89 (262)
Q Consensus 46 ~F~keA~~I~~~I~~L~~------fL~~~R~~Yl~~~~mtd~erD~ID~e 89 (262)
+=.+++|.|++...+|.+ |+.. ..+|++.-.||+++|+.|..-
T Consensus 8 ~~srkgy~LN~fc~sl~~~~nRe~F~aD-~~Ay~~~~~Lteeqr~av~~R 56 (106)
T cd07925 8 EMARKGYALNKMCFSFNDAANREAFLAD-EEAYCEKFGLTPEQKQAVRNR 56 (106)
T ss_pred HHHHHhhHHHHHHHHHCCHHHHHHHHhC-HHHHHHHcCCCHHHHHHHHHh
Confidence 345678888887777654 3443 556666679999999988654
No 19
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=56.01 E-value=17 Score=28.33 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhHHHHH------HHHHHhhhhhhccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039000 47 FTKAALKTLESVGALE------QFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQN 106 (262)
Q Consensus 47 F~keA~~I~~~I~~L~------~fL~~~R~~Yl~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~ 106 (262)
=.+++|.++....+|. .|+.. ..+|++...||++||+.|..-=-.-+-.+...|=-|.+
T Consensus 9 ~s~kgy~LN~f~~sL~~a~~Re~F~aD-~eAy~~~~gLTeEe~~AV~~rD~~~Li~lGgn~y~l~K 73 (106)
T cd07921 9 RSRKGYALNKMCMSLNKAENREAFKAD-EEAYCDKFGLTEEQKQAVLDRDWLRLLELGGNIYYLLK 73 (106)
T ss_pred HHHHhhhHHHHHHHHCCHHHHHHHHhC-HHHHHHHcCCCHHHHHHHHhCCHHHHHHhcCcHHHHHH
Confidence 3566777777776654 23333 45555557999999998876533333333333433443
No 20
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=53.59 E-value=2.2e+02 Score=27.62 Aligned_cols=116 Identities=16% Similarity=0.264 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHHhhhhhhccC-CCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccc-ccccc
Q 039000 44 RSSFTKAALKTLESVGALEQFILNHRKDYVEMH-RTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSK-GWLGL 121 (262)
Q Consensus 44 ~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~-~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~-~~~~~ 121 (262)
+.....++-.+..-+.+|++.+-..|++-.... .-+...-+.+-.+ |..|...|+.|+.|++..++-++ -|-.=
T Consensus 212 k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kd----i~~a~keL~~m~~~i~~eKP~WkKiWE~E 287 (426)
T smart00806 212 KKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKE----LETARKELKKMEEYIDIEKPIWKKIWEAE 287 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 446778889999999999999999999977763 5556666556666 99999999999999986443332 35110
Q ss_pred cccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 122 KVDR-SNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDA 163 (262)
Q Consensus 122 ~~~~-~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~ 163 (262)
...- -..+...|.+..+.-|.+-|+.++..|.-+.+.=-.+.
T Consensus 288 L~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lVeq~~~eQ~ 330 (426)
T smart00806 288 LDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLVEQCCEEQE 330 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 01133467777788899999999999999887754443
No 21
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.91 E-value=1.8e+02 Score=25.87 Aligned_cols=97 Identities=12% Similarity=0.210 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHHhhhhhhcc-CCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 039000 44 RSSFTKAALKTLESVGALEQFILNHRKDYVEM-HRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLK 122 (262)
Q Consensus 44 ~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~-~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~ 122 (262)
.|+|...=.++++-...++.+... |..|..+ .+--++--..|+ ..|....+.|+.+..... ..++|+|.
T Consensus 5 ~Dp~~~v~~e~~k~~~~~~~~~~r-~~~~~~~~~~~~~~~t~~lr----~~i~~~~edl~~~~~il~----~~~~~~~i- 74 (235)
T KOG3202|consen 5 EDPFFRVKNETLKLSEEIQGLYQR-RSELLKDTGSDAEELTSVLR----RSIEEDLEDLDELISILE----RNPSKFGI- 74 (235)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHH-HHHHHhhccchhHHHHHHHH----HHhHHHHHHHHHHHHHHH----hCcccccC-
Confidence 467777777777777777777776 4555554 111111111222 223444444444443332 23455542
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 123 VDRSNADTIAHKHGVVLILSEKLHSVTAQFDQ 154 (262)
Q Consensus 123 ~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~ 154 (262)
..-...-|..-+.-|...+..+-..|..
T Consensus 75 ----de~El~~R~~~i~~lr~q~~~~~~~~~~ 102 (235)
T KOG3202|consen 75 ----DEFELSRRRRFIDNLRTQLRQMKSKMAM 102 (235)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2223455666666666666666555444
No 22
>PRK13378 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=49.20 E-value=28 Score=27.55 Aligned_cols=43 Identities=9% Similarity=0.227 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhHHHHHH------HHHHhhhhhhccCCCChHHHhhhHHH
Q 039000 46 SFTKAALKTLESVGALEQ------FILNHRKDYVEMHRTSEQERDSIEHE 89 (262)
Q Consensus 46 ~F~keA~~I~~~I~~L~~------fL~~~R~~Yl~~~~mtd~erD~ID~e 89 (262)
+=.+++|.|++...+|.+ |+.. ..+|++.-.||+++|+.|..-
T Consensus 19 ~~srkgY~LN~fc~sl~~~~nRe~F~ad-e~Ay~~~~~Lteeqk~aV~~R 67 (117)
T PRK13378 19 EQARKGYALNKMCFSFNDAANRAAFLAD-EAAYCRKYGLNEEQKEAIRNR 67 (117)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhC-HHHHHHHcCCCHHHHHHHHhh
Confidence 557888888888887754 3333 556666679999999887653
No 23
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=45.83 E-value=1.2e+02 Score=22.41 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=58.0
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchhH
Q 039000 51 ALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADT 130 (262)
Q Consensus 51 A~~I~~~I~~L~~fL~~~R~~Yl~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (262)
-..|..+|..|.+++..+ ....-|.+-|+.|... +..|++.++......+.-. .| ......
T Consensus 5 l~~in~~v~~l~k~~~~l-----Gt~~Ds~~lR~~i~~~----~~~~~~l~k~~~~~l~~l~----~~------~~~~~~ 65 (102)
T PF14523_consen 5 LFKINQNVSQLEKLVNQL-----GTPRDSQELREKIHQL----IQKTNQLIKEISELLKKLN----SL------SSDRSN 65 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH------SSS--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHH----HS------H----H
T ss_pred HHHHHHHHHHHHHHHHHh-----CCccccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH----Hh------hhhhhh
Confidence 457888888888888774 4445677888888544 6666666666555544210 01 001223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 131 IAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAI 164 (262)
Q Consensus 131 ~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~ 164 (262)
..+......-|..-++.+...|...+..=.++++
T Consensus 66 ~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 66 DRQQKLQREKLSRDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566677888888888999888877666553
No 24
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=45.58 E-value=73 Score=23.18 Aligned_cols=21 Identities=38% Similarity=0.735 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Q 039000 86 IEHEVTAFIKTCKEKIDILQNSIND 110 (262)
Q Consensus 86 ID~e~~~~i~~~~~~I~~L~~~~~~ 110 (262)
|..+ +..|..+|+.|++..++
T Consensus 31 ~e~e----LerCK~sirrLeqevnk 51 (79)
T PF09036_consen 31 IEQE----LERCKASIRRLEQEVNK 51 (79)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHH
Confidence 6667 99999999999988764
No 25
>TIGR02792 PCA_ligA protocatechuate 4,5-dioxygenase, alpha subunit. Protocatechuate (PCA) 4,5-dioxygenase is the first enzyme in the PCA 4,5-cleavage pathway that is an alternative to PCA 3,4-cleavage and PCA 2,3 cleavage pathways. PCA is an intermediate in the breakdown of lignin (hence the gene symbol ligA) and other compounds. Members of this family are the alpha chain of PCA 4,5-dioxygenase, or the equivalent domain of a fusion protein.
Probab=42.80 E-value=47 Score=26.30 Aligned_cols=43 Identities=7% Similarity=0.151 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhHHHHH------HHHHHhhhhhhccCCCChHHHhhhHHH
Q 039000 46 SFTKAALKTLESVGALE------QFILNHRKDYVEMHRTSEQERDSIEHE 89 (262)
Q Consensus 46 ~F~keA~~I~~~I~~L~------~fL~~~R~~Yl~~~~mtd~erD~ID~e 89 (262)
+=.+++|.|++...+|. .|+.. ..+|++...||+++|+.|..-
T Consensus 13 ~~srkgy~LN~fc~sl~~~~nRerF~ad-e~Ay~d~~~Lt~eqk~av~~R 61 (117)
T TIGR02792 13 QQARKGYNLNQFCMSLMKAENRERFKAD-ESAYLDEWNLTPAQKQAVLAR 61 (117)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhC-HHHHHHHcCCCHHHHHHHHhh
Confidence 45778888888888775 34554 778888899999999887543
No 26
>cd07924 PCA_45_Doxase_A The A subunit of Protocatechuate 4,5-dioxygenase (LigAB) is the smaller, non-catalytic subunit. The A subunit is the non-catalytic subunit of Protocatechuate (PCA) 4,5-dioxygenase (LigAB), which is composed of A and B subunits that form a tetramer. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As a member of the Class III extradiol dioxygenase family, LigAB uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=41.15 E-value=53 Score=26.15 Aligned_cols=42 Identities=10% Similarity=0.214 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhHHHHH------HHHHHhhhhhhccCCCChHHHhhhHH
Q 039000 46 SFTKAALKTLESVGALE------QFILNHRKDYVEMHRTSEQERDSIEH 88 (262)
Q Consensus 46 ~F~keA~~I~~~I~~L~------~fL~~~R~~Yl~~~~mtd~erD~ID~ 88 (262)
+=.+++|.|++...+|. .|+.. ..+|++.-.||+++|+.|..
T Consensus 16 ~~srkgy~LN~fc~sl~~~~nRerF~ad-e~Ay~~~~~Lteeqr~aV~~ 63 (121)
T cd07924 16 ERARKGYHLNQFCMSLMKAENRERFKAD-ERAYLDKWPMTEEQKQAVLA 63 (121)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhC-HHHHHHHcCCCHHHHHHHHH
Confidence 45778888888888774 35555 77888889999999988754
No 27
>PRK13377 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=40.20 E-value=54 Score=26.40 Aligned_cols=43 Identities=9% Similarity=0.254 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhHHHHH------HHHHHhhhhhhccCCCChHHHhhhHHH
Q 039000 46 SFTKAALKTLESVGALE------QFILNHRKDYVEMHRTSEQERDSIEHE 89 (262)
Q Consensus 46 ~F~keA~~I~~~I~~L~------~fL~~~R~~Yl~~~~mtd~erD~ID~e 89 (262)
+-.+++|.|++...+|. .|+.. ..+|++...||+++|+.|..-
T Consensus 19 ~~srkgY~LN~fc~sL~~~~nRerF~ad-e~Ay~de~~Lteeqr~aV~~R 67 (129)
T PRK13377 19 DMSRKGYHLNQFCMSLMKAENRERFKAD-ERAYLDEWPMTEEQKQAVLAR 67 (129)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhC-HHHHHHHcCCCHHHHHHHHhh
Confidence 45778888888888774 34555 778888899999999887543
No 28
>cd07923 Gallate_dioxygenase_C The C-terminal domain of Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of the PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. This model represents the C-terminal domain, which is similar to the A subunit of PCA 4,5-dioxygenase (or LigAB). The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. Since enzymes in this subfamily have fused A and B subunits, the dimer interface may resemble the tetramer interface of classical LigAB enzymes. This enzyme belongs to the class III extradiol dioxygenase family, composed of enzymes whi
Probab=39.51 E-value=35 Score=26.01 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=25.3
Q ss_pred HHHHHHHHhHHHHHHHHHHhh-------hhhhccCCCChHHHhhhHHH
Q 039000 49 KAALKTLESVGALEQFILNHR-------KDYVEMHRTSEQERDSIEHE 89 (262)
Q Consensus 49 keA~~I~~~I~~L~~fL~~~R-------~~Yl~~~~mtd~erD~ID~e 89 (262)
+++|.++....+|. -.++| .+|++...||++||+.|-.-
T Consensus 3 ~kgy~LN~f~~sL~--~a~~RerF~~D~ea~~~e~gLt~Ee~~av~~r 48 (94)
T cd07923 3 VRAYRINRFLHRLI--EPAHRERFLEDPEALFDEAGLTEEERTLIRNR 48 (94)
T ss_pred chhHHHHHHHHHHC--CHHHHHHHHhCHHHHHHHcCCCHHHHHHHHcc
Confidence 35666666666663 23344 45555579999999888654
No 29
>PRK13379 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=37.62 E-value=59 Score=25.82 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhHHHHHH------HHHHhhhhhhccCCCChHHHhhhHHH
Q 039000 46 SFTKAALKTLESVGALEQ------FILNHRKDYVEMHRTSEQERDSIEHE 89 (262)
Q Consensus 46 ~F~keA~~I~~~I~~L~~------fL~~~R~~Yl~~~~mtd~erD~ID~e 89 (262)
+=.+++|.|++...+|.+ |+.. ..+|++...||+++|+.|-.-
T Consensus 20 ~~srkgy~LN~fc~sl~~~~~RerF~aD-e~ay~~~~~Lt~eqk~aV~~R 68 (119)
T PRK13379 20 RTSNRALRLNRFFWHMIRAPWRDRFLQD-AEALMQEAGLTEQEKELIRAR 68 (119)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHhC-HHHHHHHcCCCHHHHHHHHhc
Confidence 557888888888887743 4444 567777789999999887543
No 30
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=37.16 E-value=3.6e+02 Score=26.20 Aligned_cols=111 Identities=15% Similarity=0.275 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHHhhhhhhccC-CCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccc-ccccc
Q 039000 44 RSSFTKAALKTLESVGALEQFILNHRKDYVEMH-RTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSK-GWLGL 121 (262)
Q Consensus 44 ~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~-~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~-~~~~~ 121 (262)
+.....++..+..-+.+|+..+-..|++-+... .-+...-..+-.+ |..+...|+.|+.+.+...+.++ -|-.=
T Consensus 208 k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kd----i~~a~~~L~~m~~~i~~~kp~WkKiWE~E 283 (424)
T PF03915_consen 208 KKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKD----ISRASKELKKMKEYIKTEKPIWKKIWESE 283 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 346788888899999999999999888877652 3333333333333 77788888888888775332222 34110
Q ss_pred cccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 122 KVDR-SNADTIAHKHGVVLILSEKLHSVTAQFDQMRAI 158 (262)
Q Consensus 122 ~~~~-~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~ 158 (262)
...- ...+...|...-+.-|.+-|+.++..|.-+...
T Consensus 284 L~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~ 321 (424)
T PF03915_consen 284 LQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQC 321 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 012334667777888999999999999988775
No 31
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=36.49 E-value=43 Score=20.00 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 039000 46 SFTKAALKTLESVGALEQFILNH 68 (262)
Q Consensus 46 ~F~keA~~I~~~I~~L~~fL~~~ 68 (262)
...++|++++=++...+.||..+
T Consensus 7 ~Li~eA~~~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 7 ELIKEAKESGLSKEEIREFLEFN 29 (30)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC
Confidence 46889999999999999999764
No 32
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.51 E-value=2.8e+02 Score=24.49 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000 207 QQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE 261 (262)
Q Consensus 207 ~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~ 261 (262)
|..+..|-..|+.+...-+++++.|..=|..+-.+....-..-..=.+.|.++|+
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578888888888899999999999887777666555444443333344455443
No 33
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=34.40 E-value=3e+02 Score=24.16 Aligned_cols=55 Identities=9% Similarity=0.133 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 204 TVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEH 258 (262)
Q Consensus 204 q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~ 258 (262)
..|+..++..|..+=..+.++-.++..+++.+.+|.....++...+..=-...+.
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888999999999999999999999988877655444444
No 34
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=31.76 E-value=1.6e+02 Score=19.74 Aligned_cols=56 Identities=11% Similarity=0.081 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhhhccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 46 SFTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSIN 109 (262)
Q Consensus 46 ~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~ 109 (262)
.|.+.|+.++-.+.+++.|| ..... .+...+.+..-....+..+.++|+.|+....
T Consensus 5 ~~I~~~r~lGfsL~eI~~~l-~l~~~-------~~~~~~~~~~~l~~~~~~i~~~i~~L~~~~~ 60 (65)
T PF09278_consen 5 QFIRRLRELGFSLEEIRELL-ELYDQ-------GDPPCADRRALLEEKLEEIEEQIAELQALRA 60 (65)
T ss_dssp HHHHHHHHTT--HHHHHHHH-HHCCS-------HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH-hccCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999998 22111 2233344445555556777777777765543
No 35
>PRK02119 hypothetical protein; Provisional
Probab=31.73 E-value=1.7e+02 Score=21.03 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=19.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039000 226 DAVQQTETKMVEMSALNHLMSTHILHQAKQIEHL 259 (262)
Q Consensus 226 ~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i 259 (262)
+.+..+|..+.---..-..|..-|..|...|+.+
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L 42 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKM 42 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555556666666666666654
No 36
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=31.53 E-value=1.9e+02 Score=20.38 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=19.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039000 227 AVQQTETKMVEMSALNHLMSTHILHQAKQIEHL 259 (262)
Q Consensus 227 ~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i 259 (262)
.+..+|..+.-.-..-.+|..-|..|...|++|
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L 37 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRL 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666666666666655
No 37
>PRK04325 hypothetical protein; Provisional
Probab=31.30 E-value=1.8e+02 Score=20.84 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=17.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039000 228 VQQTETKMVEMSALNHLMSTHILHQAKQIEHL 259 (262)
Q Consensus 228 V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i 259 (262)
+..+|..+.---..-..|..-|..|..+|+.+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L 42 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLL 42 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555566666555554
No 38
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=31.01 E-value=4.5e+02 Score=27.19 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhH--------HHHHHHHHHhhhhhhccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 039000 46 SFTKAALKTLESV--------GALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKG 117 (262)
Q Consensus 46 ~F~keA~~I~~~I--------~~L~~fL~~~R~~Yl~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~ 117 (262)
.|+.+|++++..+ ..|.+||.=+ ..|+...+ ....|++|....-..+..|.+....++.....-+.
T Consensus 43 ~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lI-e~~v~~ie-~~q~r~di~~~~~dl~e~vsqm~~~vK~~L~~vK~---- 116 (683)
T PF08580_consen 43 DWIQKAKDVLYGLREGLEEIDSAISRFLDLI-EVYVSAIE-DLQLREDIANSLFDLIEEVSQMELDVKKTLISVKK---- 116 (683)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-Hhhccccc-cccccccccccHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 6777888877776 3444554332 34544210 01223344434444566666655544444332000
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 118 WLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAI 164 (262)
Q Consensus 118 ~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~ 164 (262)
. -+.+-.-.+--..|++-|..-+.++++.+-+|+|.|++--.
T Consensus 117 q-----veiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~ 158 (683)
T PF08580_consen 117 Q-----VEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPV 158 (683)
T ss_pred H-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 0 00011113667789999999999999999999999977664
No 39
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=29.02 E-value=5.5e+02 Score=25.78 Aligned_cols=83 Identities=14% Similarity=0.220 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHhHHHHHHHHHHhhhhhhccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh-hcccccccccc
Q 039000 43 ERSSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSIND-DEANSKGWLGL 121 (262)
Q Consensus 43 ~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~-~~~~~~~~~~~ 121 (262)
.+..++..|..+...|..+...|...|+. |+.+...-|..++..++.+..+.+. .....
T Consensus 132 ~r~~vl~~a~~l~~~in~~~~~L~~l~~~--------------i~~~I~~~V~~vNsLl~qIa~lN~qI~~~~~------ 191 (552)
T COG1256 132 ARQAVLSKAQTLVNQINNTYEQLTDLRKD--------------INAEIAATVDEVNSLLKQIADLNKQIRKVKA------ 191 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 34589999999999999999888886654 5566555566666666666555442 00000
Q ss_pred cccccchhHHHHHHHHHHHHHHHHH
Q 039000 122 KVDRSNADTIAHKHGVVLILSEKLH 146 (262)
Q Consensus 122 ~~~~~~~~~~~Hr~~Vl~~L~~~L~ 146 (262)
......++..-|+..|.-|+.+..
T Consensus 192 -~g~~~NdLlDqRD~Lv~eLs~~i~ 215 (552)
T COG1256 192 -AGNDPNDLLDQRDQLVDELSQLIG 215 (552)
T ss_pred -CCCCchhHHHHHHHHHHHHHhhcc
Confidence 012344566777777777766554
No 40
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=28.38 E-value=2.5e+02 Score=20.93 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=27.3
Q ss_pred HHHhHHHHHHHHHHhhhhhhcc------CCCChHHHhhhHHHHHHH
Q 039000 54 TLESVGALEQFILNHRKDYVEM------HRTSEQERDSIEHEVTAF 93 (262)
Q Consensus 54 I~~~I~~L~~fL~~~R~~Yl~~------~~mtd~erD~ID~e~~~~ 93 (262)
|+..|..+..-|..-|.+.=.. ..+|++.|..++.+...+
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l 48 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNEL 48 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHH
Confidence 5566777777766655543322 589999999999884444
No 41
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=28.25 E-value=84 Score=19.82 Aligned_cols=21 Identities=19% Similarity=0.547 Sum_probs=17.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHH
Q 039000 83 RDSIEHEVTAFIKTCKEKIDI 103 (262)
Q Consensus 83 rD~ID~e~~~~i~~~~~~I~~ 103 (262)
.|+||..+..||..+.+.++.
T Consensus 2 ~~evd~rAe~FI~~f~~qlrl 22 (38)
T PF05553_consen 2 DDEVDRRAEEFIAKFREQLRL 22 (38)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999988763
No 42
>PRK00736 hypothetical protein; Provisional
Probab=27.70 E-value=2.1e+02 Score=20.14 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=15.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039000 228 VQQTETKMVEMSALNHLMSTHILHQAKQIEHL 259 (262)
Q Consensus 228 V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i 259 (262)
+..+|..+.---..-..|..-|..|...|+.|
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L 38 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQM 38 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555544
No 43
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=27.52 E-value=3e+02 Score=26.32 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=46.1
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 80 EQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAI 158 (262)
Q Consensus 80 d~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~ 158 (262)
+.||..+..+ |..|.+....+.+..+.=.. -..-..+++..+++.|+.|......++..|...
T Consensus 206 ~~E~~~~~~d----i~~~~~A~~~l~~~~~~V~~------------d~~lT~~Qk~~l~d~l~~Y~~~l~~i~~qL~~L 268 (379)
T PF04518_consen 206 EKEREQIRRD----IKSCERAKAVLNKQLARVKA------------DAKLTSEQKSELLDSLNNYKDNLNAISNQLSLL 268 (379)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc------------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677667666 99999999888887764111 112246899999999999998888777776554
No 44
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=25.41 E-value=4.6e+02 Score=22.97 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 039000 204 TVQQQLLDDETRALQVELTSLLDAVQQTETKMVE 237 (262)
Q Consensus 204 q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~E 237 (262)
|..+..+..|...|..++.....+++.++.....
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~ 74 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQ 74 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666665555555555554433
No 45
>PRK00295 hypothetical protein; Provisional
Probab=23.85 E-value=2.7e+02 Score=19.64 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=14.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039000 228 VQQTETKMVEMSALNHLMSTHILHQAKQIEHL 259 (262)
Q Consensus 228 V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i 259 (262)
+..+|..+.---..-..|..-|..|..+|+.+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L 38 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERL 38 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555443
No 46
>PRK02793 phi X174 lysis protein; Provisional
Probab=20.81 E-value=3.2e+02 Score=19.45 Aligned_cols=32 Identities=6% Similarity=0.145 Sum_probs=16.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039000 228 VQQTETKMVEMSALNHLMSTHILHQAKQIEHL 259 (262)
Q Consensus 228 V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i 259 (262)
+..+|..+.---..-..|..-|..|..+|+.+
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L 41 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEMEMAKL 41 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555544
No 47
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=20.63 E-value=3.8e+02 Score=20.16 Aligned_cols=45 Identities=11% Similarity=0.213 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039000 206 QQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHIL 250 (262)
Q Consensus 206 Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~ 250 (262)
...++|.-|...-..+...-+.+..++..+.++-+....|..++.
T Consensus 22 d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~ 66 (99)
T PF10046_consen 22 DYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQ 66 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788888887778888888888888888888887777766654
No 48
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=20.46 E-value=5e+02 Score=24.07 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=40.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHhH------------HHHHHHHHHHHHHH---HHHHHHHHHhhc
Q 039000 201 EPLTVQQQLLDDETRALQVELTSLLD---AVQQTETKM------------VEMSALNHLMSTHI---LHQAKQIEHLYE 261 (262)
Q Consensus 201 ~~~q~Q~Q~~E~En~~ll~~l~~~l~---~V~~iE~si------------~EIs~Lq~~la~~l---~~Q~e~I~~i~~ 261 (262)
+..|.-+..+|.||..|-.+.+..-. .++.=|..+ ..|+.|+.+|+.+. ..|.+.|.+|..
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788899999998776665542 222223333 35888888888765 457777777653
No 49
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=20.45 E-value=2.8e+02 Score=19.90 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=20.7
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039000 216 ALQVELTSLLDAVQQTETKMVEMSALNHLMSTH 248 (262)
Q Consensus 216 ~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~ 248 (262)
..+++.++-...+..|+..|.+|..|+......
T Consensus 4 ~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~ 36 (103)
T PF00804_consen 4 EFFDEVQEIREDIDKIKEKLNELRKLHKKILSS 36 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345556666666777777777777776654433
No 50
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.19 E-value=5.7e+02 Score=22.08 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=26.9
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 039000 80 EQERDSIEHEVTAFIKTCKEKIDILQNSIND 110 (262)
Q Consensus 80 d~erD~ID~e~~~~i~~~~~~I~~L~~~~~~ 110 (262)
+.+=|++..-...+++.|+..|..++.|...
T Consensus 8 E~~~~~le~~l~kl~K~~k~~~~agk~~~~a 38 (200)
T cd07639 8 EAEVSELETRLEKLVKLGSGMLEGGRHYCAA 38 (200)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888999999999999999986
Done!