Query 039000
Match_columns 262
No_of_seqs 108 out of 234
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:33:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhe_B Syntaxin1; exocytosis, 99.1 1.7E-10 5.7E-15 103.1 10.8 203 42-260 41-251 (279)
2 1dn1_B Syntaxin 1A, syntaxin b 98.8 1.2E-06 4.2E-11 77.6 20.4 199 42-260 28-234 (267)
3 1fio_A SSO1 protein; four heli 98.7 1.5E-06 5.1E-11 73.1 16.8 176 46-253 6-196 (196)
4 3c98_B Syntaxin-1A; protein co 98.5 5.7E-07 1.9E-11 78.5 9.5 227 2-260 11-246 (279)
5 1n7s_B Syntaxin 1A; neuronal s 98.1 9.6E-06 3.3E-10 57.1 7.0 43 218-260 4-46 (68)
6 3b5n_B Protein SSO1; snare com 98.1 9.9E-06 3.4E-10 57.3 7.0 43 218-260 2-44 (69)
7 1jth_B Syntaxin 1A; coiled-coi 98.0 1.5E-05 5.1E-10 57.5 7.0 43 218-260 2-44 (77)
8 1sfc_B Protein (syntaxin 1A), 97.8 6.4E-05 2.2E-09 55.0 7.0 43 218-260 13-55 (83)
9 1gl2_B Syntaxin 7; membrane pr 97.8 4.4E-05 1.5E-09 53.3 5.7 41 220-260 3-43 (65)
10 3hd7_B Syntaxin-1A; membrane p 97.8 6.5E-05 2.2E-09 57.8 7.0 46 215-260 10-55 (109)
11 2nps_B Syntaxin 13, vesicle-as 97.7 7.1E-05 2.4E-09 53.1 6.0 38 223-260 3-40 (71)
12 1ez3_A Syntaxin-1A; three heli 96.1 0.29 9.8E-06 37.5 14.3 108 45-162 8-121 (127)
13 1s94_A S-syntaxin; three helix 93.0 2 6.7E-05 34.9 12.6 104 45-158 39-148 (180)
14 1mqs_B SED5P, integral membran 91.3 0.056 1.9E-06 35.4 0.8 20 3-22 7-26 (50)
15 4dnd_A Syntaxin-10, SYN10; str 82.8 13 0.00044 28.8 10.0 101 42-148 24-124 (130)
16 2c5k_T Syntaxin TLG1, T-snare 75.8 19 0.00066 26.2 8.5 87 44-152 5-91 (95)
17 1n7s_C SNAP-25A; neuronal snar 65.1 33 0.0011 24.1 8.6 52 207-261 7-58 (79)
18 1b4u_A LIGA, LIGB, protocatech 52.0 9.7 0.00033 30.0 2.9 42 46-89 29-77 (139)
19 3cvf_A Homer-3, homer protein 45.8 76 0.0026 22.3 7.7 52 203-254 11-66 (79)
20 3cve_A Homer protein homolog 1 43.8 78 0.0027 21.9 8.1 52 203-254 5-60 (72)
21 3okq_A BUD site selection prot 43.7 1.1E+02 0.0039 23.8 10.6 110 45-158 17-129 (141)
22 1gl2_C VTI1B, vesicle transpor 39.7 61 0.0021 21.6 5.1 37 223-259 6-42 (65)
23 3fx7_A Putative uncharacterize 36.4 1.2E+02 0.0042 22.0 8.0 56 54-109 18-73 (94)
24 2pjw_V Vacuolar protein sortin 33.4 1.3E+02 0.0046 21.6 10.5 33 131-163 56-88 (91)
25 1ci6_A Transcription factor AT 27.5 1.2E+02 0.0042 20.0 5.0 32 203-234 28-59 (63)
26 4gif_A Polycystic kidney disea 27.3 1.2E+02 0.004 19.0 5.5 35 220-254 8-42 (45)
27 2nps_D Syntaxin-6; vesicle fus 27.0 77 0.0026 22.0 4.1 45 204-259 8-52 (82)
28 1k1f_A Breakpoint cluster regi 26.9 99 0.0034 21.0 4.3 44 63-110 6-51 (72)
29 3ghg_A Fibrinogen alpha chain; 26.2 4.3E+02 0.015 25.1 10.5 30 45-74 53-82 (562)
30 2gut_A ARC/mediator, positive 26.1 74 0.0025 22.3 3.7 56 7-62 10-69 (77)
31 4emc_A Monopolin complex subun 25.2 2.8E+02 0.0096 22.7 8.8 54 208-261 23-76 (190)
32 2dla_A 397AA long hypothetical 24.7 13 0.00045 30.8 -0.4 31 44-75 5-35 (222)
33 2k48_A Nucleoprotein; viral pr 23.4 2.3E+02 0.0078 21.0 7.9 67 76-150 30-96 (107)
34 3he5_B Synzip2; heterodimeric 21.9 1.5E+02 0.0051 18.3 5.6 40 62-109 9-48 (52)
35 3p8c_E Probable protein brick1 21.8 2.1E+02 0.007 19.9 5.8 40 52-109 23-62 (75)
36 2wt7_A Proto-oncogene protein 21.0 1.8E+02 0.0063 19.0 5.6 27 204-230 29-55 (63)
37 3twe_A Alpha4H; unknown functi 20.8 1.1E+02 0.0038 16.5 3.4 21 215-235 4-24 (27)
38 3te3_A Polycystic kidney disea 20.2 1.4E+02 0.0046 18.2 3.6 22 220-241 8-29 (39)
No 1
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.15 E-value=1.7e-10 Score=103.14 Aligned_cols=203 Identities=11% Similarity=0.106 Sum_probs=129.2
Q ss_pred CCCCHHHHHHHHHHHhHHHHHHHHHHhhhhhhcc-C--CCCh--HHHhhhHHHHH---HHHHHHHHHHHHHHHHhhhhcc
Q 039000 42 RERSSFTKAALKTLESVGALEQFILNHRKDYVEM-H--RTSE--QERDSIEHEVT---AFIKTCKEKIDILQNSINDDEA 113 (262)
Q Consensus 42 ~~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~-~--~mtd--~erD~ID~e~~---~~i~~~~~~I~~L~~~~~~~~~ 113 (262)
...+.|...|..|...|..+...|.+..+-+-.. . ..++ ..+++|+..+. ..++.|...|+.|+...+...
T Consensus 41 ~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~- 119 (279)
T 2xhe_B 41 PFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQ- 119 (279)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 4457899999999999999999998877765432 2 2223 34777776544 448889999999988765321
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcccCCCCCCCCCCCCcc
Q 039000 114 NSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMR 193 (262)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~~~~~~l~~~~~~~~~~~~~s~~~~~~ 193 (262)
..++|-. ....+...|+.+++..|...|..+...|+.++..+.++.+.+..+..... ++... ....+..
T Consensus 120 ~~~~~~~----~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~------~~~~~-~ee~~~~ 188 (279)
T 2xhe_B 120 QEGTFED----GTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVV------EPSLS-DDAIQKV 188 (279)
T ss_dssp HHHCCST----TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSS------CCCCS-STTHHHH
T ss_pred hcccccC----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCC-HHHHHHH
Confidence 1122310 01111347999999999999999999999999999888866543211000 00000 0000000
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 194 ELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY 260 (262)
Q Consensus 194 ~~~~ls~~~~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~ 260 (262)
.+.. .+. ...| +...+...-+++++.+..+|++||++|.||..||..|+..|.+|++.|++|-
T Consensus 189 ~e~g-~~~-~f~q--~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie 251 (279)
T 2xhe_B 189 IEHG-TEG-IFSG--MRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIE 251 (279)
T ss_dssp HHHC---------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHH
T ss_pred HhCC-chH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 0000 000 0001 1111223345679999999999999999999999999999999999999883
No 2
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=98.76 E-value=1.2e-06 Score=77.59 Aligned_cols=199 Identities=11% Similarity=0.146 Sum_probs=125.8
Q ss_pred CCCCHHHHHHHHHHHhHHHHHHHHHHhhhhhh---ccCCCChHHHhhhHHHHHH---HHHHHHHHHHHHHHHhhhhcccc
Q 039000 42 RERSSFTKAALKTLESVGALEQFILNHRKDYV---EMHRTSEQERDSIEHEVTA---FIKTCKEKIDILQNSINDDEANS 115 (262)
Q Consensus 42 ~~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl---~~~~mtd~erD~ID~e~~~---~i~~~~~~I~~L~~~~~~~~~~~ 115 (262)
..-+.|..++.+|...|..+...+.++++-+- ......+.-|++||..+.. ..+.|..+|+.|+........ .
T Consensus 28 ~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~-~ 106 (267)
T 1dn1_B 28 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG-L 106 (267)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c
Confidence 44579999999999999999999877665543 2222224567777765544 477788888888776432100 0
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcccCC-CCC-CCCCCCCcc
Q 039000 116 KGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKY-ADT-SNPNKSDMR 193 (262)
Q Consensus 116 ~~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~~~~~~l~~~~~~~~-~~~-~~s~~~~~~ 193 (262)
..+.....-+.+++..|..+|..+...|..++..-.++.+.+-.+.....+...+.. .+. ..++.....
T Consensus 107 ---------~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie~g~~~~f 177 (267)
T 1dn1_B 107 ---------NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIF 177 (267)
T ss_dssp ---------TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCSSCTT
T ss_pred ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHhCCcHHHH
Confidence 011222345788999999999999999999988766666554322111111100000 000 000000001
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 194 ELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY 260 (262)
Q Consensus 194 ~~~~ls~~~~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~ 260 (262)
...-+. + . .....-+.+.+.+..+|.+||++|.|+..||..|+..|.+|++.|++|-
T Consensus 178 ~q~~l~-~-~--------~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie 234 (267)
T 1dn1_B 178 ASGIIM-D-S--------SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIE 234 (267)
T ss_dssp TTTCCC-C-S--------HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHH
T ss_pred HHHHHH-h-h--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 011010 0 0 1223456789999999999999999999999999999999999999883
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=98.65 E-value=1.5e-06 Score=73.08 Aligned_cols=176 Identities=14% Similarity=0.131 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhhhcc-CCCCh----HHHhhhHHH---HHHHHHHHHHHHHHHHHHhhhhcccccc
Q 039000 46 SFTKAALKTLESVGALEQFILNHRKDYVEM-HRTSE----QERDSIEHE---VTAFIKTCKEKIDILQNSINDDEANSKG 117 (262)
Q Consensus 46 ~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~-~~mtd----~erD~ID~e---~~~~i~~~~~~I~~L~~~~~~~~~~~~~ 117 (262)
.|...+.+|...|..+..-+.+..+.+-.. +..++ ..|++|+.. +...++.|..+|+.|+.....
T Consensus 6 ~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~------- 78 (196)
T 1fio_A 6 GFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIH------- 78 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-------
Confidence 799999999999999999987776665442 22222 457777744 445578888888888765421
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcccCCCCCCCCCCCCcccccC
Q 039000 118 WLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMRELDE 197 (262)
Q Consensus 118 ~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~ 197 (262)
..++.+++..|...|..+...|...+....++.+++-.+....... .. + + +.. +..
T Consensus 79 -------------~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~-~~-------~-~-~e~-~~~ 134 (196)
T 1fio_A 79 -------------DTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQP-EA-------T-E-DEV-EAA 134 (196)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TC-------C-H-HHH-HHH
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CC-------C-H-HHH-HHH
Confidence 2478889999999999999999999999888887765432111110 00 0 0 000 000
Q ss_pred CCC---chhHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039000 198 IQP---EPLTVQQQLLD----DETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQA 253 (262)
Q Consensus 198 ls~---~~~q~Q~Q~~E----~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~ 253 (262)
+.. +..- +..++. .+-...+++...+-.+|++||++|.|+..||..|+..|.+|+
T Consensus 135 ~~~~~~~~~f-~~~~~~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 135 ISDVGGQQIF-SQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp TSHHHHHHHH-HHHTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHcCCchhHH-HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 100 0000 111111 012345678999999999999999999999999999988774
No 4
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=98.46 E-value=5.7e-07 Score=78.46 Aligned_cols=227 Identities=11% Similarity=0.145 Sum_probs=127.2
Q ss_pred CcccCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhcCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhhh---ccCCC
Q 039000 2 ARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQFILNHRKDYV---EMHRT 78 (262)
Q Consensus 2 ~~~~D~T~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl---~~~~m 78 (262)
.+|.|||.+|+.+........... .......-++|..++.+|...|..+...+.++...+- .....
T Consensus 11 g~mkDr~~el~~~~~~~~~~~~~~-----------~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~ 79 (279)
T 3c98_B 11 GSMKDRTQELRTAKDSDDDDDVTV-----------TVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP 79 (279)
T ss_dssp ---CCCCTTTC----------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred CchHHHHHHHHHhhhcccccchhh-----------hcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 358899999998876544321100 0112344579999999999999999999877655432 22333
Q ss_pred ChHHHhhhHH---HHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 79 SEQERDSIEH---EVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQM 155 (262)
Q Consensus 79 td~erD~ID~---e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~ 155 (262)
...-+..++. ++......|...+..++........ . ........++..++..|...+..+...|.+.
T Consensus 80 ~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~-i---------~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~ 149 (279)
T 3c98_B 80 DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG-L---------NRSSADLRIRKTQHSTLSRKFVEVMSEYNAT 149 (279)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T---------TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h---------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 4444567777777777665543110 0 1123456788889999999999999999888
Q ss_pred HHHHHHHHHHHhcchhhhhhhcccC--C-CCCCCCCCCCcccccCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039000 156 RAIRFQDAINRAMPRRKLKRETVSK--Y-ADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTE 232 (262)
Q Consensus 156 ~e~R~~r~~e~~~~~~~l~~~~~~~--~-~~~~~s~~~~~~~~~~ls~~~~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE 232 (262)
+........+.-+........+... . .................+... ....+.+.+...+.+..|+
T Consensus 150 ~~~~~~vva~evr~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~i~~I~ 218 (279)
T 3c98_B 150 QSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSI-----------SKQALSEIETRHSEIIKLE 218 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSCCTTSSTTTSCSCSSS-----------TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCccchHHHHHHHhhhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 7766655544432111111110000 0 000000000000000001111 1223345778888999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 233 TKMVEMSALNHLMSTHILHQAKQIEHLY 260 (262)
Q Consensus 233 ~si~EIs~Lq~~la~~l~~Q~e~I~~i~ 260 (262)
.+|.+|..++..|+..|.+|++.|++|.
T Consensus 219 ~~i~ei~~~~~~ia~~v~eQ~~~~~~I~ 246 (279)
T 3c98_B 219 NSIRELHDMFMDMAMLVESQGEMIDRIE 246 (279)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCSGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998874
No 5
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=98.08 E-value=9.6e-06 Score=57.15 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=40.5
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 218 QVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY 260 (262)
Q Consensus 218 l~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~ 260 (262)
|++++.+.++|++||++|.||..||..|+..|.+|++.|++|-
T Consensus 4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie 46 (68)
T 1n7s_B 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIE 46 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5678899999999999999999999999999999999999984
No 6
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.08 E-value=9.9e-06 Score=57.26 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=40.4
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 218 QVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY 260 (262)
Q Consensus 218 l~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~ 260 (262)
|++++.+.+++++||++|.|+..||..|+..|.+|++.||+|-
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie 44 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVID 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4678899999999999999999999999999999999999984
No 7
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=98.01 E-value=1.5e-05 Score=57.51 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=40.3
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 218 QVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY 260 (262)
Q Consensus 218 l~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~ 260 (262)
|++.+.+.++|++||++|.|+..||..|+..|.+|++.||+|-
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie 44 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIE 44 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4678889999999999999999999999999999999999983
No 8
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=97.78 E-value=6.4e-05 Score=54.96 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=39.7
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 218 QVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY 260 (262)
Q Consensus 218 l~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~ 260 (262)
+.+...+..++.+||++|.|+..||..|+..|.+|++.|++|-
T Consensus 13 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie 55 (83)
T 1sfc_B 13 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4568888888999999999999999999999999999999983
No 9
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=97.77 E-value=4.4e-05 Score=53.27 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=36.8
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 220 ELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY 260 (262)
Q Consensus 220 ~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~ 260 (262)
++..+-.++++||++|.|+..||..|+..|.+|++.|++|=
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie 43 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIE 43 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999999999999999999999999983
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.75 E-value=6.5e-05 Score=57.76 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=42.9
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 215 RALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY 260 (262)
Q Consensus 215 ~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~ 260 (262)
...|++.+++.+++++||++|.|+..||..|+.+|.+|++.||+|-
T Consensus 10 ~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie 55 (109)
T 3hd7_B 10 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIE 55 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4567889999999999999999999999999999999999999984
No 11
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=97.69 E-value=7.1e-05 Score=53.05 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 223 SLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY 260 (262)
Q Consensus 223 ~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~ 260 (262)
.+.++|++||++|.||..||..|+..|.+|++.||+|-
T Consensus 3 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie 40 (71)
T 2nps_B 3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIE 40 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 46788999999999999999999999999999999984
No 12
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=96.07 E-value=0.29 Score=37.50 Aligned_cols=108 Identities=10% Similarity=0.193 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHHhhhhh---hccCCCChHHHhhhHHH---HHHHHHHHHHHHHHHHHHhhhhccccccc
Q 039000 45 SSFTKAALKTLESVGALEQFILNHRKDY---VEMHRTSEQERDSIEHE---VTAFIKTCKEKIDILQNSINDDEANSKGW 118 (262)
Q Consensus 45 d~F~keA~~I~~~I~~L~~fL~~~R~~Y---l~~~~mtd~erD~ID~e---~~~~i~~~~~~I~~L~~~~~~~~~~~~~~ 118 (262)
+.|..++.+|-..|..|...+.+++..+ |+...-.+..++++|.. +......|..+|+.|+........ .
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~-~--- 83 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG-L--- 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c---
Confidence 4799999999999999999987655544 44333344556666654 445577788888888766542110 0
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 119 LGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQD 162 (262)
Q Consensus 119 ~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r 162 (262)
........-|.+++..|..+|..+-..|..++..--++
T Consensus 84 ------~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~ 121 (127)
T 1ez3_A 84 ------NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRER 121 (127)
T ss_dssp ------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122335678899999999999999999877664433
No 13
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=93.02 E-value=2 Score=34.95 Aligned_cols=104 Identities=11% Similarity=0.218 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHHhhhhh---hccCCCChHHHhhhH---HHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 039000 45 SSFTKAALKTLESVGALEQFILNHRKDY---VEMHRTSEQERDSIE---HEVTAFIKTCKEKIDILQNSINDDEANSKGW 118 (262)
Q Consensus 45 d~F~keA~~I~~~I~~L~~fL~~~R~~Y---l~~~~mtd~erD~ID---~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~ 118 (262)
+.|..++..|-..|..+...+.++++.+ |....-...-|++++ .++....+.|..+|+.|+..........
T Consensus 39 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~--- 115 (180)
T 1s94_A 39 EEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSN--- 115 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---
Confidence 4799999999999999999987765554 332211122244444 5556668888888888887654311000
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 119 LGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAI 158 (262)
Q Consensus 119 ~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~ 158 (262)
.......-|.+++..|..+|..+...|...+..
T Consensus 116 -------~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~ 148 (180)
T 1s94_A 116 -------KSSADLRIRKTQYSTISRKFVEVMSDYNTTQID 148 (180)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111123456788889999999999999887654
No 14
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=91.30 E-value=0.056 Score=35.36 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=17.6
Q ss_pred cccCCcHHHHHHHHHHHhhc
Q 039000 3 RIRDRTEDFKDVVRHTAVSL 22 (262)
Q Consensus 3 ~~~D~T~~F~~~v~~~~~~~ 22 (262)
++.|||++|+.+|..+++..
T Consensus 7 SiqDRT~EF~siv~~lqkr~ 26 (50)
T 1mqs_B 7 NIKDRTSEFQQSVLSYKKRN 26 (50)
T ss_dssp HHHBCHHHHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHHhcc
Confidence 36899999999999999865
No 15
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=82.83 E-value=13 Score=28.78 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHhHHHHHHHHHHhhhhhhccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 039000 42 RERSSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGL 121 (262)
Q Consensus 42 ~~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~ 121 (262)
...|+|..-+.+|.+.|..|..++.....-.-..+..+-.|.+..-.+....++.+..-|..|+..+..-. ..+.+||+
T Consensus 24 s~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE-~np~kF~l 102 (130)
T 4dnd_A 24 SLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVE-ANPGKFKL 102 (130)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHCC
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHhcCC
Confidence 45799999999999999999999876322111112223356666677777778888899999998887411 22333342
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHH
Q 039000 122 KVDRSNADTIAHKHGVVLILSEKLHSV 148 (262)
Q Consensus 122 ~~~~~~~~~~~Hr~~Vl~~L~~~L~~v 148 (262)
......-|...|.-++..+..+
T Consensus 103 -----~~~Ei~~Rr~fV~~~r~~I~~m 124 (130)
T 4dnd_A 103 -----PAGDLQERKVFVERMREAVQEM 124 (130)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334445555566665554
No 16
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=75.79 E-value=19 Score=26.22 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHHhhhhhhccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 039000 44 RSSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKV 123 (262)
Q Consensus 44 ~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~ 123 (262)
.|+|..=..++...|..|..++.++ ..| .+.. -..+....++.+.+-|..|...+..-..
T Consensus 5 ~DPF~~V~~D~~~ql~~l~~~~~~~-~~~-----~~~~----~~~El~~~l~el~e~l~DL~~SI~i~e~---------- 64 (95)
T 2c5k_T 5 EDPFQQVVKDTKEQLNRINNYITRH-NTA-----GDDD----QEEEIQDILKDVEETIVDLDRSIIVMKR---------- 64 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHT-CCC-------CT----THHHHHHHHHHHHHHHHHHHHHHHHHHT----------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHc-cCC-----CCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 4899999999999999999999883 333 1223 3356666688888888888888764110
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 124 DRSNADTIAHKHGVVLILSEKLHSVTAQF 152 (262)
Q Consensus 124 ~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f 152 (262)
........|...|.-|...|..+-..+
T Consensus 65 --~~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 65 --DENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp --STTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 022334788888888888877765544
No 17
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=65.13 E-value=33 Score=24.05 Aligned_cols=52 Identities=10% Similarity=0.055 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000 207 QQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE 261 (262)
Q Consensus 207 ~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~ 261 (262)
+|.++.+-.. .++..++.++..-+-+.|.-.+=......|..|+|+|+++..
T Consensus 7 ~q~l~~~~~~---~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~ 58 (79)
T 1n7s_C 7 LEEMQRRADQ---LADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEE 58 (79)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence 4456555444 366678888888888888888888888999999999998753
No 18
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=52.03 E-value=9.7 Score=29.96 Aligned_cols=42 Identities=5% Similarity=0.052 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhhhcc-------CCCChHHHhhhHHH
Q 039000 46 SFTKAALKTLESVGALEQFILNHRKDYVEM-------HRTSEQERDSIEHE 89 (262)
Q Consensus 46 ~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~-------~~mtd~erD~ID~e 89 (262)
+=.+++|.+++.+.+|.+ .++|..|+.+ -.||++||+.|..-
T Consensus 29 ~~s~kgY~LNkf~~sL~~--~~~RerF~aDpeA~l~~~gLTeEEr~AV~~r 77 (139)
T 1b4u_A 29 QRARKGYNLNQFAMSLMK--AENRERFKADESAYLDEWNLTPAAKAAVLAR 77 (139)
T ss_dssp HHHHHTHHHHHHHHHTTS--HHHHHHHHHCHHHHHHTTTCCHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHCC--HHHHHHHHhCHHHHHHHcCCCHHHHHHHHcC
Confidence 567889999999988864 5566666555 68999999887654
No 19
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=45.83 E-value=76 Score=22.34 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Q 039000 203 LTVQQQLLDDETRALQVEL---TSLLDAVQQTETKM-VEMSALNHLMSTHILHQAK 254 (262)
Q Consensus 203 ~q~Q~Q~~E~En~~ll~~l---~~~l~~V~~iE~si-~EIs~Lq~~la~~l~~Q~e 254 (262)
..+.+|-+|.+|..|=..+ +..++.-+.=...+ .|+..+.+.|..+|.+=.+
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSE 66 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3457889999999875443 33444444444444 7888888888888876444
No 20
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=43.82 E-value=78 Score=21.89 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Q 039000 203 LTVQQQLLDDETRALQVE---LTSLLDAVQQTETKM-VEMSALNHLMSTHILHQAK 254 (262)
Q Consensus 203 ~q~Q~Q~~E~En~~ll~~---l~~~l~~V~~iE~si-~EIs~Lq~~la~~l~~Q~e 254 (262)
..+.+|.+|.+|..|=.. ++..++.-+.=...+ .|+..+.+.|..+|.+=.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 346789999999986544 334444444444444 7888888888888876444
No 21
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=43.74 E-value=1.1e+02 Score=23.81 Aligned_cols=110 Identities=17% Similarity=0.275 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHHhhhhhhccC-CCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccc-cccccc
Q 039000 45 SSFTKAALKTLESVGALEQFILNHRKDYVEMH-RTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSK-GWLGLK 122 (262)
Q Consensus 45 d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~-~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~-~~~~~~ 122 (262)
.....++-.+..-|.+|+..+-..|++-+... ..+...-..+-.+ |..+...|..|+.|.+...+.++ -|-.-.
T Consensus 17 ~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kd----i~~a~~eL~~m~~~i~~ekP~WKKiWE~EL 92 (141)
T 3okq_A 17 TELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKD----LENAQADVLKLQEFIDTEKPHWKKTWEAEL 92 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Confidence 46778889999999999999999999877763 3444444444444 88999999999999886433222 351100
Q ss_pred ccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 123 VDRSN-ADTIAHKHGVVLILSEKLHSVTAQFDQMRAI 158 (262)
Q Consensus 123 ~~~~~-~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~ 158 (262)
..--. .+...|....+.-|.+=|.+++..|.-+...
T Consensus 93 ~~VceEQqfl~~QedL~~DL~eDL~ka~etf~lVeq~ 129 (141)
T 3okq_A 93 DKVCEEQQFLTLQEELILDLKEDLGKALETFDLIKLC 129 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001 2445788888889999999999999877654
No 22
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=39.65 E-value=61 Score=21.63 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039000 223 SLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHL 259 (262)
Q Consensus 223 ~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i 259 (262)
...+.++...+.+.|.-.+=......|..|.|+|.+.
T Consensus 6 ~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t 42 (65)
T 1gl2_C 6 RATQSIERSHRIATETDQIGTEIIEELGEQRDQLERT 42 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH
Confidence 3344444555555555555555555555555555543
No 23
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=36.37 E-value=1.2e+02 Score=22.00 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=36.1
Q ss_pred HHHhHHHHHHHHHHhhhhhhccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 54 TLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSIN 109 (262)
Q Consensus 54 I~~~I~~L~~fL~~~R~~Yl~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~ 109 (262)
+-+....|+.-..+.+..|-+.+.--|.+|++++......++.+..-+..-..++.
T Consensus 18 L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp 73 (94)
T 3fx7_A 18 LERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIA 73 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhH
Confidence 33344445555566677776765445999999999988777766665554444443
No 24
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=33.38 E-value=1.3e+02 Score=21.57 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000 131 IAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDA 163 (262)
Q Consensus 131 ~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~ 163 (262)
...+...+.-++.+|..+.+.|..+.+.|+...
T Consensus 56 ~~~K~~~L~~mn~Kls~a~rlYD~lLE~~l~~~ 88 (91)
T 2pjw_V 56 KAQKYNTLIEMNGKISEIMNIYDRLLEQQLQSI 88 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467778999999999999999999999998754
No 25
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.54 E-value=1.2e+02 Score=19.95 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 039000 203 LTVQQQLLDDETRALQVELTSLLDAVQQTETK 234 (262)
Q Consensus 203 ~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~s 234 (262)
++.+.+.|+.+|.+|-..+...-.++..+-.=
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888776666655555544333
No 26
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=27.27 E-value=1.2e+02 Score=19.02 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=28.3
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 039000 220 ELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAK 254 (262)
Q Consensus 220 ~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e 254 (262)
++......|.++|.+|..|.+=-+-+.++|-.|..
T Consensus 8 eF~~L~rRVlqlE~~l~gI~S~idav~~Kl~~~Er 42 (45)
T 4gif_A 8 EFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLER 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47778889999999999998887777777766653
No 27
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=27.03 E-value=77 Score=22.01 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039000 204 TVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHL 259 (262)
Q Consensus 204 q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i 259 (262)
|.|.+++++.++. |..+...+...+.+ =..+-.-|-.|.+.++.|
T Consensus 8 q~Q~~~~~eQD~~-Ld~L~~~v~~LK~~----------a~~Ig~El~~Qn~lLd~l 52 (82)
T 2nps_D 8 TGGNNMGRMQDEQ-LELVSGSIGVLKNM----------SQRIGGELEEQAVMLEDF 52 (82)
T ss_dssp ----------CCT-HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHH
Confidence 4556666554443 44444444444433 334444445555555544
No 28
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=26.90 E-value=99 Score=21.04 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=28.4
Q ss_pred HHHHHhhhhhhcc--CCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 039000 63 QFILNHRKDYVEM--HRTSEQERDSIEHEVTAFIKTCKEKIDILQNSIND 110 (262)
Q Consensus 63 ~fL~~~R~~Yl~~--~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~ 110 (262)
.|+..-|..+-+. ..|.-.--..|+.+ +..|..+|+.|+...+.
T Consensus 6 gf~eaW~aqfp~~epp~m~l~~vgdiEqe----Le~Ck~sIrrLE~evn~ 51 (72)
T 1k1f_A 6 GFAEAWKAQFPDSEPPRMELRSVGDIEQE----LERAKASIRRLEQEVNQ 51 (72)
T ss_dssp HHHHHHHHHCTTSCCCCCCCSSHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcHhHHhhhhHHHHH----HHHHHHHHHHHHHHHhH
Confidence 3555555555443 23333333457777 99999999999987763
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.15 E-value=4.3e+02 Score=25.15 Aligned_cols=30 Identities=7% Similarity=0.142 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHHhhhhhhc
Q 039000 45 SSFTKAALKTLESVGALEQFILNHRKDYVE 74 (262)
Q Consensus 45 d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~ 74 (262)
....|.=.++.+-|.+|+.-|.++.+.|-+
T Consensus 53 glLdkqErDltkrINELKnqLEdlsKnsKd 82 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKD 82 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHhhchh
Confidence 356777888888888887777766555544
No 30
>2gut_A ARC/mediator, positive cofactor 2 glutamine/Q- rich-associated protein; KIX, 3 helical bundle, transcription; NMR {Homo sapiens}
Probab=26.07 E-value=74 Score=22.31 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=32.6
Q ss_pred CcHHHHHHHHH-HHh---hcCCChhHHHHHhhhhhcCCCCCCCHHHHHHHHHHHhHHHHH
Q 039000 7 RTEDFKDVVRH-TAV---SLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALE 62 (262)
Q Consensus 7 ~T~~F~~~v~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~F~keA~~I~~~I~~L~ 62 (262)
+++.||+-|-. +.. ..|-|.++.+.......-.+...+++++.-+.++.-|+.++.
T Consensus 10 ~s~~FRq~vi~~i~~a~~~~G~~~~k~a~emEnhvF~Ka~tkdEYL~lvarli~h~r~m~ 69 (77)
T 2gut_A 10 RSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIH 69 (77)
T ss_dssp TSHHHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHHHHhccCcccchHHHHHHHHHHHHhhc
Confidence 68999976532 221 124344433333333333445667888888888877776654
No 31
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.17 E-value=2.8e+02 Score=22.66 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000 208 QLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE 261 (262)
Q Consensus 208 Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~ 261 (262)
+-+-.||..|-+.+....++++.+...+...-+=-..+-..+..+.|.|+-+.|
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~D 76 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKD 76 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHH
Confidence 356667777666666555555555444433322222344455677777776544
No 32
>2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet, replication; 2.90A {Pyrococcus horikoshii}
Probab=24.74 E-value=13 Score=30.82 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHHhhhhhhcc
Q 039000 44 RSSFTKAALKTLESVGALEQFILNHRKDYVEM 75 (262)
Q Consensus 44 ~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~ 75 (262)
-|+|.++|+++.+.-.++..||..| +.|+++
T Consensus 5 LDPFg~~Ak~LlkeFG~in~fLe~I-P~~vdv 35 (222)
T 2dla_A 5 LDPFSEKAKELLKGFGSINDFMDAI-PKIVSV 35 (222)
T ss_dssp SCTTSHHHHHHTTTTSSHHHHHHHG-GGTCCH
T ss_pred ccchhHHHHHHHHHhccHHHHHHHc-cccccH
Confidence 4899999999999999999999886 889983
No 33
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=23.41 E-value=2.3e+02 Score=20.98 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=45.1
Q ss_pred CCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 039000 76 HRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTA 150 (262)
Q Consensus 76 ~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~ 150 (262)
.+||=.+-.++..+....=+++......|+.+++.-... .++.|+....-|.+||..|..+|...=+
T Consensus 30 ~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~D--------PDevNK~tl~~R~~~Vsalq~KiaeLKr 96 (107)
T 2k48_A 30 DPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVD--------PDDVNKSTLQNRRAAVSTLETKLGELKR 96 (107)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555677777777777777777777776631100 1345677778999999999999977633
No 34
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.95 E-value=1.5e+02 Score=18.33 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=27.9
Q ss_pred HHHHHHhhhhhhccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 62 EQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSIN 109 (262)
Q Consensus 62 ~~fL~~~R~~Yl~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~ 109 (262)
++-+...+++-|. -|||+ .....+|..+...|..|++.+.
T Consensus 9 rkkiarlkkdnlq------lerde--qnlekiianlrdeiarleneva 48 (52)
T 3he5_B 9 RKKIARLKKDNLQ------LERDE--QNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHH------HHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhh------hhhhH--hhHHHHHHHHHHHHHHHHHHHh
Confidence 3444444666666 67775 4556788899999999988764
No 35
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=21.85 E-value=2.1e+02 Score=19.89 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=28.3
Q ss_pred HHHHHhHHHHHHHHHHhhhhhhccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 039000 52 LKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSIN 109 (262)
Q Consensus 52 ~~I~~~I~~L~~fL~~~R~~Yl~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~ 109 (262)
..|...|.++-.||.. ++..++.-+..++.+|..|+....
T Consensus 23 e~in~~I~~~v~FLN~------------------F~~sce~KLa~ln~KL~~LEr~L~ 62 (75)
T 3p8c_E 23 EIITSSIKKIADFLNS------------------FDMSCRSRLATLNEKLTALERRIE 62 (75)
T ss_dssp HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888876 556666667777777777776543
No 36
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.97 E-value=1.8e+02 Score=18.99 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039000 204 TVQQQLLDDETRALQVELTSLLDAVQQ 230 (262)
Q Consensus 204 q~Q~Q~~E~En~~ll~~l~~~l~~V~~ 230 (262)
+.+...|+.+|..|-.++...-.++..
T Consensus 29 e~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888888877665554444433
No 37
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.77 E-value=1.1e+02 Score=16.45 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=15.3
Q ss_pred HHHHHHHHhHHHHHHHHHHhH
Q 039000 215 RALQVELTSLLDAVQQTETKM 235 (262)
Q Consensus 215 ~~ll~~l~~~l~~V~~iE~si 235 (262)
++||.++++.-+.++++-+.+
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567888888777777766654
No 38
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=20.15 E-value=1.4e+02 Score=18.16 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=17.5
Q ss_pred HHHhHHHHHHHHHHhHHHHHHH
Q 039000 220 ELTSLLDAVQQTETKMVEMSAL 241 (262)
Q Consensus 220 ~l~~~l~~V~~iE~si~EIs~L 241 (262)
++......|.++|.++..|.+=
T Consensus 8 eF~~L~rRVlqlE~~l~gI~S~ 29 (39)
T 3te3_A 8 EFYMLTRRVLQLETVLEGVVSQ 29 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788899999998887653
Done!