BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039003
         (286 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase
           From Trypanosoma Brucei
 pdb|4EU1|B Chain B, Structure Of A Mitochondrial Aspartate Aminotransferase
           From Trypanosoma Brucei
          Length = 409

 Score = 32.3 bits (72), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 35  LVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFSSKKELYLHLCNPILI 87
            V  A++  A   + ++ F+P    D+V   I +  FS    LY H C  + I
Sbjct: 220 FVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSXNFGLYGHRCGALHI 272


>pdb|1QMO|E Chain E, Structure Of Fril, A Legume Lectin That Delays
           Hematopoietic Progenitor Maturation
 pdb|1QMO|F Chain F, Structure Of Fril, A Legume Lectin That Delays
           Hematopoietic Progenitor Maturation
 pdb|1QMO|G Chain G, Structure Of Fril, A Legume Lectin That Delays
           Hematopoietic Progenitor Maturation
 pdb|1QMO|H Chain H, Structure Of Fril, A Legume Lectin That Delays
           Hematopoietic Progenitor Maturation
          Length = 133

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 8   IELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVA 49
           IEL+ +  + V + LS ++  D  R T+ SW+F S+  +NVA
Sbjct: 78  IELHTVLPEWVRVGLSASTGQDKERNTVHSWSFTSSLWTNVA 119


>pdb|3CNY|A Chain A, Crystal Structure Of A Putative Inositol Catabolism
           Protein Iole (Iole, Lp_3607) From Lactobacillus
           Plantarum Wcfs1 At 1.85 A Resolution
 pdb|3CNY|B Chain B, Crystal Structure Of A Putative Inositol Catabolism
           Protein Iole (Iole, Lp_3607) From Lactobacillus
           Plantarum Wcfs1 At 1.85 A Resolution
          Length = 301

 Score = 28.1 bits (61), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 240 GWMEIELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIE 282
           G+   E+G FF G E+ + E+K+   EI G      ++ +GIE
Sbjct: 44  GFQGTEVGGFFPGPEKLNYELKLRNLEIAGQWFSSYIIRDGIE 86


>pdb|3NBN|A Chain A, Crystal Structure Of A Dimer Of Notch Transcription
           Complex Trimers On Hes1 Dna
 pdb|3NBN|D Chain D, Crystal Structure Of A Dimer Of Notch Transcription
           Complex Trimers On Hes1 Dna
          Length = 433

 Score = 27.7 bits (60), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 189 GNQIISANTAYLSCKDKKKHQMEC--LFYGN 217
           G    +A T Y+S  DK+KH M    +FYGN
Sbjct: 98  GKNYCTAKTLYISDSDKRKHFMLSVKMFYGN 128


>pdb|2F8X|C Chain C, Crystal Structure Of Activated Notch, Csl And Maml On
           Hes-1 Promoter Dna Sequence
 pdb|3V79|C Chain C, Structure Of Human Notch1 Transcription Complex Including
           Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
          Length = 434

 Score = 27.3 bits (59), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 189 GNQIISANTAYLSCKDKKKHQMEC--LFYGN 217
           G    +A T Y+S  DK+KH M    +FYGN
Sbjct: 98  GKNYCTAKTLYISDSDKRKHFMLSVKMFYGN 128


>pdb|3BRG|C Chain C, Csl (Rbp-Jk) Bound To Dna
          Length = 427

 Score = 27.3 bits (59), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 189 GNQIISANTAYLSCKDKKKHQMEC--LFYGN 217
           G    +A T Y+S  DK+KH M    +FYGN
Sbjct: 98  GKNYCTAKTLYISDSDKRKHFMLSVKMFYGN 128


>pdb|3IAG|C Chain C, Csl (Rbp-Jk) Bound To Hes-1 Nonconsensus Site
          Length = 422

 Score = 27.3 bits (59), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 189 GNQIISANTAYLSCKDKKKHQMEC--LFYGN 217
           G    +A T Y+S  DK+KH M    +FYGN
Sbjct: 93  GKNYCTAKTLYISDSDKRKHFMLSVKMFYGN 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,560,543
Number of Sequences: 62578
Number of extensions: 342163
Number of successful extensions: 782
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 11
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)