Query 039003
Match_columns 286
No_of_seqs 173 out of 356
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:24:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 6.6E-66 1.4E-70 440.1 19.8 152 101-286 1-154 (154)
2 PF12937 F-box-like: F-box-lik 98.7 1.2E-08 2.5E-13 69.9 3.4 45 10-54 1-45 (47)
3 PF00646 F-box: F-box domain; 98.4 8.8E-08 1.9E-12 65.3 1.0 45 9-53 2-46 (48)
4 smart00256 FBOX A Receptor for 98.3 8.5E-07 1.8E-11 57.9 3.9 40 13-52 1-40 (41)
5 PF06881 Elongin_A: RNA polyme 95.2 0.011 2.3E-07 47.7 1.8 71 9-82 3-73 (109)
6 KOG3926 F-box proteins [Amino 94.2 0.04 8.6E-07 51.5 3.1 81 2-82 194-278 (332)
7 KOG2997 F-box protein FBX9 [Ge 93.5 0.03 6.5E-07 53.4 1.1 79 9-89 106-194 (366)
8 KOG4408 Putative Mg2+ and Co2+ 90.5 0.084 1.8E-06 50.7 0.2 58 5-63 3-60 (386)
9 PLN03215 ascorbic acid mannose 86.4 0.66 1.4E-05 45.3 3.4 39 9-47 3-42 (373)
10 KOG0274 Cdc4 and related F-box 84.9 0.57 1.2E-05 47.9 2.2 55 5-59 103-157 (537)
11 KOG2120 SCF ubiquitin ligase, 74.9 3.2 6.8E-05 40.1 3.4 44 9-52 97-140 (419)
12 PF13013 F-box-like_2: F-box-l 72.6 5 0.00011 32.6 3.7 44 6-51 18-61 (109)
13 KOG4114 Cytochrome c oxidase a 45.7 9.4 0.0002 28.6 0.7 18 9-26 37-54 (73)
14 PF13464 DUF4115: Domain of un 40.8 94 0.002 22.9 5.6 24 141-164 7-34 (77)
15 KOG0281 Beta-TrCP (transducin 40.5 21 0.00047 34.9 2.4 42 10-51 75-120 (499)
16 PF02018 CBM_4_9: Carbohydrate 33.5 2.2E+02 0.0048 21.8 9.2 28 155-188 57-84 (131)
17 PF11679 DUF3275: Protein of u 24.0 2.1E+02 0.0045 26.1 5.7 43 240-285 22-72 (214)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=6.6e-66 Score=440.15 Aligned_cols=152 Identities=49% Similarity=0.887 Sum_probs=140.1
Q ss_pred CceEEEEecccceeeecCCCCceEEeeCCccccccceEEeeeeEEEEEEEEeccccCCCcceEEEEEEEecCCcCCCCcc
Q 039003 101 GKKSYVLSARELSITWSDRPEYWSWKPSLKSRFLEVAELRMISWLEIEGKIRTHMLSPNTMYRAYLLINITHRAHGLDLL 180 (286)
Q Consensus 101 G~kCymLsAR~L~ItWgd~~~YW~W~~~p~SRF~EVAeL~~VcWLEI~G~i~~~~LSP~t~Y~aylv~kl~d~~~G~d~~ 180 (286)
||||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++.+|||+|+|+||||||+++++|||+..
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~ 80 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP 80 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CeeEEEEe-ccee-eeeeEEecccCccccccchheeccccccccccccccCccccccccCCCeEEEEeeeEEeCCCCCce
Q 039003 181 PSDTFLEM-GNQI-ISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGDERFARERDDGWMEIELGEFFSGDEEGDQ 258 (286)
Q Consensus 181 pv~~sv~~-gg~~-~~~~~v~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~DgW~EielGeF~~~~~~~~~ 258 (286)
||+++|++ ++.. ...+.+ .+|+.|+|||||||+|||+++++++ +
T Consensus 81 pv~~~v~~~~~~~~~~~~~~---------------------------------~~~~~r~dgW~Eie~GeF~~~~~~~-~ 126 (154)
T PF14299_consen 81 PVEFSVKVPDGEKYEQERKV---------------------------------CLPKERGDGWMEIELGEFFNEGGDD-G 126 (154)
T ss_pred CEEEEEEeCCCccccceeeE---------------------------------EcCCCCCCCEEEEEcceEEecCCCC-c
Confidence 99999999 4332 011222 3467889999999999999998777 7
Q ss_pred EEEEEEEEEeCCeecceEEEEeEEEEeC
Q 039003 259 EVKMSLREIKGYQLKGGLVIEGIEVRPK 286 (286)
Q Consensus 259 eV~fsl~E~~~~~wK~GLiv~GIeIRPk 286 (286)
+|+|+|+|+++++||+||||+|||||||
T Consensus 127 ev~f~~~E~~~~~wK~GLiv~GieIRPK 154 (154)
T PF14299_consen 127 EVEFSMYEVDSGHWKGGLIVEGIEIRPK 154 (154)
T ss_pred EEEEEEEEecCCcccCeEEEEEEEEecC
Confidence 9999999999999999999999999998
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.71 E-value=1.2e-08 Score=69.86 Aligned_cols=45 Identities=29% Similarity=0.525 Sum_probs=40.3
Q ss_pred ccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCC
Q 039003 10 LNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFL 54 (286)
Q Consensus 10 ~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~fl 54 (286)
+.+||+|.+..|+++++|.|.+++++||+.|+.++.++.+|.++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 478999999999999999999999999999999999999998764
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.40 E-value=8.8e-08 Score=65.31 Aligned_cols=45 Identities=38% Similarity=0.547 Sum_probs=39.5
Q ss_pred cccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCC
Q 039003 9 ELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKF 53 (286)
Q Consensus 9 ~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~f 53 (286)
.+.+||++++..|++++++.|.++++.||+.|+.+++++.+|..+
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 478999999999999999999999999999999999999999765
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.30 E-value=8.5e-07 Score=57.85 Aligned_cols=40 Identities=38% Similarity=0.479 Sum_probs=38.6
Q ss_pred chhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcC
Q 039003 13 LPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEK 52 (286)
Q Consensus 13 Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~ 52 (286)
||++++..|+++++|.|.+++++||+.|+.+++++.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=95.20 E-value=0.011 Score=47.66 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=58.6
Q ss_pred cccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCCCCchhhhhcccCCCCCCcHHHHHHHhc
Q 039003 9 ELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFSSKKELYLHLC 82 (286)
Q Consensus 9 ~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~SkKelY~~L~ 82 (286)
+++++|-++|.-||...+|....++-.-|+-+ +-++|.+|.+|+=.||..-.... .+.+.-|.+++|..+.
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~-~~~~~~~Wr~~Y~~~~ 73 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQ-KPKEPESWRELYEKLK 73 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhcc-cccccchHHHHHHHHH
Confidence 57899999999999999999999999999755 67799999999999997522221 1344568999999986
No 6
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=94.18 E-value=0.04 Score=51.50 Aligned_cols=81 Identities=23% Similarity=0.286 Sum_probs=61.9
Q ss_pred CCCcccccccCchhHHHHHHHhcCC-hHhHHHHhhccHHHHHhhcCchhhcCCCCCCchh--hhhcccC-CCCCCcHHHH
Q 039003 2 EPTTKCIELNMLPEDCVSIILSLTS-PLDACRATLVSWAFRSAAESNVAWEKFLPSDYQD--IVSRSIT-SLKFSSKKEL 77 (286)
Q Consensus 2 ~~~~~~~~~~~Lpe~cia~ils~t~-P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~--i~~~~~~-~~~~~SkKel 77 (286)
||++++-.|-|||++|+-.||-+++ -+|.--+|.|-++....++.+-+|.+.+--.|.+ |-..... -....-.|.+
T Consensus 194 ~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqm 273 (332)
T KOG3926|consen 194 EPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQM 273 (332)
T ss_pred CCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHH
Confidence 7888899999999999999999865 7999999999999999999999999877644431 2222111 0111236789
Q ss_pred HHHhc
Q 039003 78 YLHLC 82 (286)
Q Consensus 78 Y~~L~ 82 (286)
|+.|.
T Consensus 274 yf~L~ 278 (332)
T KOG3926|consen 274 YFQLR 278 (332)
T ss_pred HHHHH
Confidence 98885
No 7
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.52 E-value=0.03 Score=53.38 Aligned_cols=79 Identities=19% Similarity=0.324 Sum_probs=56.5
Q ss_pred cccCchhHHHHHHHhcC-----ChHhHHHHhhccHHHHHhhcCchhhcCCCCCCchhhhhcccCC----CCCCcHHHHHH
Q 039003 9 ELNMLPEDCVSIILSLT-----SPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITS----LKFSSKKELYL 79 (286)
Q Consensus 9 ~~~~Lpe~cia~ils~t-----~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~----~~~~SkKelY~ 79 (286)
.|..||++.+-.|+... +-++-.++|+||+.|+-+|..|.+|..+|=.-|+.-+-...+- .-..|.+++|+
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl 185 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFL 185 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHh
Confidence 36889999998888664 4599999999999999999999999998876555332221110 11346777766
Q ss_pred HhcCC-ceecC
Q 039003 80 HLCNP-ILIDG 89 (286)
Q Consensus 80 ~L~~p-vlld~ 89 (286)
. +| |.+||
T Consensus 186 ~--RpRvrFdG 194 (366)
T KOG2997|consen 186 E--RPRVRFDG 194 (366)
T ss_pred h--Ccceeecc
Confidence 5 34 66655
No 8
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=90.50 E-value=0.084 Score=50.66 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=51.6
Q ss_pred cccccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCCCCchhhhh
Q 039003 5 TKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVS 63 (286)
Q Consensus 5 ~~~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~ 63 (286)
...++++.||.+-+.++++++.++++.+.|+||+.+...++-+.+|++++-.++. |..
T Consensus 3 ~~~~~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~-is~ 60 (386)
T KOG4408|consen 3 TLPLGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLL-ISE 60 (386)
T ss_pred ccccchhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccccccccc-ccc
Confidence 3467899999999999999999999999999999999999999999999976654 443
No 9
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=86.38 E-value=0.66 Score=45.34 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=35.3
Q ss_pred cccCchhHHHHHHHhcC-ChHhHHHHhhccHHHHHhhcCc
Q 039003 9 ELNMLPEDCVSIILSLT-SPLDACRATLVSWAFRSAAESN 47 (286)
Q Consensus 9 ~~~~Lpe~cia~ils~t-~P~d~cr~a~vs~~fr~aa~sD 47 (286)
.-.+||+|.|..|..++ +..|..|+++|++++|+|+...
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence 35689999999999998 7899999999999999998863
No 10
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=84.92 E-value=0.57 Score=47.89 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=48.0
Q ss_pred cccccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCCCCch
Q 039003 5 TKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQ 59 (286)
Q Consensus 5 ~~~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~ 59 (286)
.....+..||-+..-.||+++++++.++++.||+.|+.-++.|.+|.+.+.....
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~ 157 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG 157 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence 3344577899999999999999999999999999999999999999977776444
No 11
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=74.86 E-value=3.2 Score=40.07 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=42.0
Q ss_pred cccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcC
Q 039003 9 ELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEK 52 (286)
Q Consensus 9 ~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~ 52 (286)
.++.||++.+-.|+|.+--.|.-++|.|++.|...|....+|..
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 37899999999999999999999999999999999999999984
No 12
>PF13013 F-box-like_2: F-box-like domain
Probab=72.61 E-value=5 Score=32.60 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=37.4
Q ss_pred ccccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhc
Q 039003 6 KCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWE 51 (286)
Q Consensus 6 ~~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~ 51 (286)
+...+.|||++.+..|+.+-++.+...+....+++|.+.+. .|.
T Consensus 18 ~~ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~--~~~ 61 (109)
T PF13013_consen 18 QSLTLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH--IWY 61 (109)
T ss_pred cccchhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH--HHH
Confidence 34468999999999999999999999999999999887544 554
No 13
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=45.66 E-value=9.4 Score=28.58 Aligned_cols=18 Identities=28% Similarity=0.783 Sum_probs=15.5
Q ss_pred cccCchhHHHHHHHhcCC
Q 039003 9 ELNMLPEDCVSIILSLTS 26 (286)
Q Consensus 9 ~~~~Lpe~cia~ils~t~ 26 (286)
++.+|||+|++.+=.|+.
T Consensus 37 ~~~~vPeeC~al~~af~d 54 (73)
T KOG4114|consen 37 ELKDVPEECIALMKAFLD 54 (73)
T ss_pred ccccCcHHHHHHHHHHHH
Confidence 457899999999998875
No 14
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=40.84 E-value=94 Score=22.86 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=18.2
Q ss_pred eeeEEEEE---E-EEeccccCCCcceEE
Q 039003 141 MISWLEIE---G-KIRTHMLSPNTMYRA 164 (286)
Q Consensus 141 ~VcWLEI~---G-~i~~~~LSP~t~Y~a 164 (286)
.-||++|+ | .+-..+|.+|.+|..
T Consensus 7 ~~sWv~V~d~dG~~~~~~~l~~G~~~~~ 34 (77)
T PF13464_consen 7 GDSWVEVTDADGKVLFSGTLKAGETKTF 34 (77)
T ss_pred CCeEEEEEeCCCcEeeeeeeCCCcEEEE
Confidence 56999999 4 555677788887776
No 15
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=40.47 E-value=21 Score=34.93 Aligned_cols=42 Identities=24% Similarity=0.508 Sum_probs=36.2
Q ss_pred ccCch----hHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhc
Q 039003 10 LNMLP----EDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWE 51 (286)
Q Consensus 10 ~~~Lp----e~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~ 51 (286)
++.|| +...-.|||+++..+.|.+-.||+.++.+-+..-+|.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 45689 8888899999999999999999999998877666665
No 16
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=33.45 E-value=2.2e+02 Score=21.79 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=19.8
Q ss_pred ccCCCcceEEEEEEEecCCcCCCCccCeeEEEEe
Q 039003 155 MLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEM 188 (286)
Q Consensus 155 ~LSP~t~Y~aylv~kl~d~~~G~d~~pv~~sv~~ 188 (286)
.|.||.+|.+.+-+|.... .++.+.+..
T Consensus 57 ~l~~G~~Y~~s~~vk~~~~------~~~~~~~~~ 84 (131)
T PF02018_consen 57 SLKPGKTYTVSFWVKADSG------GTVSVSLRD 84 (131)
T ss_dssp EE-TTSEEEEEEEEEESSS------EEEEEEEEE
T ss_pred EecCCCEEEEEEEEEeCCC------CEEEEEEEE
Confidence 3559999999999998873 445555554
No 17
>PF11679 DUF3275: Protein of unknown function (DUF3275); InterPro: IPR021693 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=24.02 E-value=2.1e+02 Score=26.10 Aligned_cols=43 Identities=28% Similarity=0.442 Sum_probs=28.4
Q ss_pred CeEEEEeeeEEeCC--------CCCceEEEEEEEEEeCCeecceEEEEeEEEEe
Q 039003 240 GWMEIELGEFFSGD--------EEGDQEVKMSLREIKGYQLKGGLVIEGIEVRP 285 (286)
Q Consensus 240 gW~EielGeF~~~~--------~~~~~eV~fsl~E~~~~~wK~GLiv~GIeIRP 285 (286)
|=+.-++|+|.+.+ |.-+|+..+.=.-..+..|.||++|+ ||-
T Consensus 22 G~L~T~iG~F~VKD~~LdQy~EGkY~G~F~I~~I~p~sY~~~G~~~~E---IRA 72 (214)
T PF11679_consen 22 GRLATSIGEFVVKDAELDQYPEGKYDGEFVITEIFPSSYPAGGRMVVE---IRA 72 (214)
T ss_pred eEEEeeeeeEEecCHHHhccccCccccEEEEEEEeecceecCCcEEEE---EEE
Confidence 78899999998743 33334444333333477889999976 663
Done!