Query 039003
Match_columns 286
No_of_seqs 173 out of 356
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:35:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 1.3E-09 4.5E-14 75.2 4.7 50 4-53 3-52 (53)
2 3l2o_B F-box only protein 4; s 98.6 1.7E-08 5.8E-13 93.7 3.0 75 8-82 3-93 (312)
3 2e31_A FBS1, F-box only protei 98.3 2.9E-07 9.7E-12 85.4 3.6 84 4-89 45-130 (297)
4 2ovr_B FBW7, F-BOX/WD repeat p 98.0 2.3E-06 7.9E-11 79.7 3.1 55 1-55 10-64 (445)
5 1p22_A F-BOX/WD-repeat protein 97.6 1.2E-05 4.1E-10 74.9 1.6 56 2-57 3-62 (435)
6 3v7d_B Cell division control p 97.6 2E-05 6.8E-10 73.3 1.9 52 3-54 8-60 (464)
7 2ast_B S-phase kinase-associat 97.0 0.00039 1.3E-08 62.5 3.8 48 6-53 5-52 (336)
8 2p1m_B Transport inhibitor res 94.7 0.018 6.3E-07 55.4 3.8 35 9-43 5-40 (594)
9 3ogk_B Coronatine-insensitive 94.2 0.026 8.8E-07 54.4 3.4 34 11-44 14-48 (592)
10 4hfx_A Transcription elongatio 90.7 0.097 3.3E-06 40.6 1.8 64 12-82 12-75 (97)
11 1dyo_A Endo-1,4-beta-xylanase 82.8 17 0.00058 29.5 11.4 91 154-286 63-156 (160)
12 2w5f_A Endo-1,4-beta-xylanase 36.2 1.9E+02 0.0065 28.0 10.1 41 238-285 128-168 (540)
13 3tes_A Tencon; fibronectin typ 30.8 50 0.0017 23.7 3.9 37 151-191 57-93 (98)
14 3qht_C Monobody YSMB-1; fibron 22.0 66 0.0023 22.7 3.1 34 151-185 60-94 (97)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.90 E-value=1.3e-09 Score=75.23 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=40.6
Q ss_pred CcccccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCC
Q 039003 4 TTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKF 53 (286)
Q Consensus 4 ~~~~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~f 53 (286)
+.....+.+||++++..|+++++|.|.+++++||+.|+.++.++.+|..+
T Consensus 3 ~~~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 3 NFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp ------CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCCCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 44566799999999999999999999999999999999999999999864
No 2
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.58 E-value=1.7e-08 Score=93.72 Aligned_cols=75 Identities=27% Similarity=0.436 Sum_probs=61.5
Q ss_pred ccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCCCCch---hhhhcccCCC-------------CC
Q 039003 8 IELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQ---DIVSRSITSL-------------KF 71 (286)
Q Consensus 8 ~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~---~i~~~~~~~~-------------~~ 71 (286)
..|++||.+++-.|+||++|.|+||+|+||+.||.+|+.+.+|..||-+|++ +|-..+.|.. .+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~ 82 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAF 82 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----C
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccc
Confidence 4589999999999999999999999999999999999999999999987744 4444333211 14
Q ss_pred CcHHHHHHHhc
Q 039003 72 SSKKELYLHLC 82 (286)
Q Consensus 72 ~SkKelY~~L~ 82 (286)
..++.+|.+=|
T Consensus 83 ~~~~~~y~~~~ 93 (312)
T 3l2o_B 83 FDYMAVYRMCC 93 (312)
T ss_dssp CCHHHHHHHHC
T ss_pred ccHHHHHHhcC
Confidence 46789999876
No 3
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.30 E-value=2.9e-07 Score=85.42 Aligned_cols=84 Identities=13% Similarity=0.147 Sum_probs=62.5
Q ss_pred CcccccccCchhHHHHHHHhcCChHhHH-HHhhccHHHHHhhcCchhhcCCCCCCchhhhhcccCCCCCCcHHHHHHHhc
Q 039003 4 TTKCIELNMLPEDCVSIILSLTSPLDAC-RATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFSSKKELYLHLC 82 (286)
Q Consensus 4 ~~~~~~~~~Lpe~cia~ils~t~P~d~c-r~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~SkKelY~~L~ 82 (286)
...++.+..||++.+..||+++.|.+.+ |+++||+.||..++++.+|.++|.... +........+..+.|.+|+.-.
T Consensus 45 ~~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g--~~~~~~~~~~~~~Wk~~y~~~~ 122 (297)
T 2e31_A 45 AEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEG--LVPEGSADEERDHWQQFYFLSK 122 (297)
T ss_dssp --CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTT--CCCC-----CCSCHHHHHHHHH
T ss_pred cccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccC--cccccccCCCCCChhhhhehee
Confidence 3346788999999999999999999999 999999999999999999998877551 2111111124457999998754
Q ss_pred -CCceecC
Q 039003 83 -NPILIDG 89 (286)
Q Consensus 83 -~pvlld~ 89 (286)
.-+||.+
T Consensus 123 ~gRNLL~N 130 (297)
T 2e31_A 123 RRRNLLRN 130 (297)
T ss_dssp HCCCCSSC
T ss_pred cccceeec
Confidence 3456654
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.00 E-value=2.3e-06 Score=79.72 Aligned_cols=55 Identities=25% Similarity=0.391 Sum_probs=49.8
Q ss_pred CCCCcccccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCC
Q 039003 1 MEPTTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLP 55 (286)
Q Consensus 1 ~~~~~~~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP 55 (286)
++|.....-|..||++++..||++++|.|.|++|+||+.|+.+++++.+|.+++-
T Consensus 10 ~~~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 10 IEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp HCCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred cCccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 3566666678999999999999999999999999999999999999999997764
No 5
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.64 E-value=1.2e-05 Score=74.92 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=49.1
Q ss_pred CCCcccccccCchhH----HHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCCCC
Q 039003 2 EPTTKCIELNMLPED----CVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSD 57 (286)
Q Consensus 2 ~~~~~~~~~~~Lpe~----cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d 57 (286)
+|.-..--|..||++ .+..||++++|.|.|++++||+.|+..++++.+|.+++..+
T Consensus 3 ~~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~ 62 (435)
T 1p22_A 3 AIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62 (435)
T ss_dssp CCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred ChhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 455555567889999 99999999999999999999999999999999999876544
No 6
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.56 E-value=2e-05 Score=73.31 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=45.1
Q ss_pred CCcccccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcC-chhhcCCC
Q 039003 3 PTTKCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAES-NVAWEKFL 54 (286)
Q Consensus 3 ~~~~~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~s-D~vW~~fl 54 (286)
|.-..--|..||++++..|+++++|.|.|++++||+.|+..+++ +.+|.+++
T Consensus 8 ~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 8 DNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp -CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred cccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33333447789999999999999999999999999999999987 89999876
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.01 E-value=0.00039 Score=62.54 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=42.0
Q ss_pred ccccccCchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCC
Q 039003 6 KCIELNMLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKF 53 (286)
Q Consensus 6 ~~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~f 53 (286)
....+++||++++..|+++++++|.++++.||+.|+.++.+...|..+
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 356789999999999999999999999999999999998777778753
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.73 E-value=0.018 Score=55.43 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=29.4
Q ss_pred cccCchhHHHHHHHhcCC-hHhHHHHhhccHHHHHh
Q 039003 9 ELNMLPEDCVSIILSLTS-PLDACRATLVSWAFRSA 43 (286)
Q Consensus 9 ~~~~Lpe~cia~ils~t~-P~d~cr~a~vs~~fr~a 43 (286)
.+++||++++..|+++++ ++|++++|.||+.|+.+
T Consensus 5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 478999999999999999 99999999999999988
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.17 E-value=0.026 Score=54.45 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=31.6
Q ss_pred cCchhHHHHHHHhcC-ChHhHHHHhhccHHHHHhh
Q 039003 11 NMLPEDCVSIILSLT-SPLDACRATLVSWAFRSAA 44 (286)
Q Consensus 11 ~~Lpe~cia~ils~t-~P~d~cr~a~vs~~fr~aa 44 (286)
.+||++|+.+|++|+ +++|+++++.||+.|+.+.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 379999999999999 8999999999999999873
No 10
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=90.65 E-value=0.097 Score=40.57 Aligned_cols=64 Identities=19% Similarity=0.334 Sum_probs=40.1
Q ss_pred CchhHHHHHHHhcCChHhHHHHhhccHHHHHhhcCchhhcCCCCCCchhhhhcccCCCCCCcHHHHHHHhc
Q 039003 12 MLPEDCVSIILSLTSPLDACRATLVSWAFRSAAESNVAWEKFLPSDYQDIVSRSITSLKFSSKKELYLHLC 82 (286)
Q Consensus 12 ~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~SkKelY~~L~ 82 (286)
..|-+.+.-||-+.||..-.++-.-|+.+ .-++|-+|.+||-.||..-. +...-|.+++|.+|.
T Consensus 12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-----p~e~esWRelY~rl~ 75 (97)
T 4hfx_A 12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-----PEEYESWREMYLRLQ 75 (97)
T ss_dssp --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-----CCSSSCHHHHHHHHH
T ss_pred CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-----CCCCCCHHHHHHHHH
Confidence 46888889999999999999999999965 78899999999999998332 245579999999997
No 11
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=82.82 E-value=17 Score=29.48 Aligned_cols=91 Identities=8% Similarity=0.030 Sum_probs=52.4
Q ss_pred cccCCCcceEEEEEEEecCCcCCCCccCeeEEEEe-c--ceeeeeeEEecccCccccccchheeccccccccccccccCc
Q 039003 154 HMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEM-G--NQIISANTAYLSCKDKKKHQMECLFYGNRTQRTKSRVIEGD 230 (286)
Q Consensus 154 ~~LSP~t~Y~aylv~kl~d~~~G~d~~pv~~sv~~-g--g~~~~~~~v~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (286)
..|.||++|.+..-+|+.+.. +...+.+++.. + |.. +...+. .
T Consensus 63 ~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~~---~y~~i~----------------------------~ 108 (160)
T 1dyo_A 63 RTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGTQ---RYDTID----------------------------M 108 (160)
T ss_dssp TTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSCE---EEEEEE----------------------------E
T ss_pred hhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCCE---EEEEEe----------------------------e
Confidence 468899999999999987632 21223333332 1 211 111111 0
Q ss_pred cccccccCCCeEEEEeeeEEeCCCCCceEEEEEEEEEeCCeecceEEEEeEEEEeC
Q 039003 231 ERFARERDDGWMEIELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRPK 286 (286)
Q Consensus 231 ~~~P~~R~DgW~EielGeF~~~~~~~~~eV~fsl~E~~~~~wK~GLiv~GIeIRPk 286 (286)
. ....++|.+++-|.|....... .+.+- .|. ..-..=+.|+.|.|.|.
T Consensus 109 ~---~~~~~~W~~L~G~~ft~~~~~~--~~~ly-ve~--~~~~~d~yiDdv~i~~~ 156 (160)
T 1dyo_A 109 K---TVGPNQWVHLYNPQYRIPSDAT--DMYVY-VET--ADDTINFYIDEAIGAVA 156 (160)
T ss_dssp E---EECSSCCEEEEEEEEECCTTCE--EEEEE-EEE--SSCCCCEEEEEEEEEET
T ss_pred E---EEcCCccEEEECcEEEeCCCCC--EEEEE-EEC--CCCCccEEEEEEEEEeC
Confidence 0 1234789999987999865322 34332 233 23455588999998873
No 12
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=36.18 E-value=1.9e+02 Score=28.02 Aligned_cols=41 Identities=10% Similarity=0.349 Sum_probs=26.5
Q ss_pred CCCeEEEEeeeEEeCCCCCceEEEEEEEEEeCCeecceEEEEeEEEEe
Q 039003 238 DDGWMEIELGEFFSGDEEGDQEVKMSLREIKGYQLKGGLVIEGIEVRP 285 (286)
Q Consensus 238 ~DgW~EielGeF~~~~~~~~~eV~fsl~E~~~~~wK~GLiv~GIeIRP 285 (286)
.++|.+++ |.|...... ..+++-+ |.. -..-+.|+.|.|.+
T Consensus 128 ~g~Wt~L~-g~ft~p~~~--~~~~lyv-e~~---~~~~f~vDdvsl~~ 168 (540)
T 2w5f_A 128 AGEWTEIS-AKYKAPKTA--VNITLSI-TTD---STVDFIFDDVTITR 168 (540)
T ss_dssp TTCCEEEE-EEEECCTTE--EEEEEEE-EES---SCCCEEEEEEEEEE
T ss_pred CCeeEEEE-eEEEecCCC--eEEEEEE-EcC---CCCCEEEEEEEEec
Confidence 58999999 799875432 3455433 332 24568888888754
No 13
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=30.83 E-value=50 Score=23.73 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=25.1
Q ss_pred EeccccCCCcceEEEEEEEecCCcCCCCccCeeEEEEecce
Q 039003 151 IRTHMLSPNTMYRAYLLINITHRAHGLDLLPSDTFLEMGNQ 191 (286)
Q Consensus 151 i~~~~LSP~t~Y~aylv~kl~d~~~G~d~~pv~~sv~~gg~ 191 (286)
+...-|.|+|.|.+.+.-.-.. | ...|+...+..||.
T Consensus 57 ~~l~gL~P~t~Y~~~V~A~~~~---g-~S~p~~~~~~~~~~ 93 (98)
T 3tes_A 57 YDLTGLKPGTEYTVSIYGVKGG---H-RSNPLSAEFTTGGH 93 (98)
T ss_dssp EEECSCCTTCEEEEEEEEEETT---E-EBCCEEEEEECSSC
T ss_pred EEECCCCCCCEEEEEEEEEeCC---c-ccCCEEEEEEcCcc
Confidence 3345689999999876554332 3 34788888877664
No 14
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=21.97 E-value=66 Score=22.74 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=19.7
Q ss_pred EeccccCCCcceEEEEEEEecCCcCC-CCccCeeEE
Q 039003 151 IRTHMLSPNTMYRAYLLINITHRAHG-LDLLPSDTF 185 (286)
Q Consensus 151 i~~~~LSP~t~Y~aylv~kl~d~~~G-~d~~pv~~s 185 (286)
+.-.-|.|+|.|.+.+.-.-.. ..| ....|+.+.
T Consensus 60 ~~l~~L~p~t~Y~v~V~A~~~~-G~gp~ss~p~~~~ 94 (97)
T 3qht_C 60 ATISGLSPGVDYTITVYAYYSY-YDLYYSYSPSSIN 94 (97)
T ss_dssp EEECSCCTTCEEEEEEEEEEEE-TTEEEECSCEEEE
T ss_pred EEeCCCCCCCEEEEEEEEEeCC-ccCCCCCCCEEEe
Confidence 3345689999998876654433 223 233555443
Done!