BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039007
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 60 SKSQF--LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQS---LQT 114
+ QF L L L + + LP I +L +R L + ++ +LP + + Q
Sbjct: 122 TXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181
Query: 115 LILRGCLKLE-----ELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN 169
L+ L+LE LP I L +L+ + S I L L L + C
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 170 LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSL 218
L G + L+ LIL DC +L++LP + L+ E L L C +L
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 91/247 (36%), Gaps = 56/247 (22%)
Query: 70 LDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKD 129
+D + + LP + L L+R ++ LP SI L L+ L +R C +L ELP+
Sbjct: 111 IDAAGLXELPDTXQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEP 169
Query: 130 IRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCW-NLEYLFEHIGQLSGLRSLIL 188
+ + S + G+ L SLR W + L I L L+SL +
Sbjct: 170 L-----------ASTDASGEHQGLVNLQSLRL-----EWTGIRSLPASIANLQNLKSLKI 213
Query: 189 VDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVS 248
+ P L +L A+ L E L L C +L + +F
Sbjct: 214 RNSP-LSALGPAIHHLPKLEELDLRGCTALR---------------------NYPPIF-- 249
Query: 249 GXXXXXXXXXXXXXGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPE 308
G L+ L ++DC N + L + L LE L + C LS LP
Sbjct: 250 --------------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
Query: 309 DIHHLTT 315
I L
Sbjct: 296 LIAQLPA 302
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 24/143 (16%)
Query: 65 LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE 124
L+ L L+ + I LP I NL++++ L + R + L +I L L+ L LRGC L
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 125 ELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLR 184
P +F + L+ LI+ C NL L I +L+ L
Sbjct: 244 NYPP---------IF--------------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280
Query: 185 SLILVDCPSLISLPSAVKCLSSS 207
L L C +L LPS + L ++
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPAN 303
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 275 DCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPL 334
D L + + LETL + A L +LP I L L+ LSI+ CP L E +PL
Sbjct: 112 DAAGLXELPDTXQQFAGLETLTL-ARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170
Query: 335 TGEDWS 340
D S
Sbjct: 171 ASTDAS 176
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 88/239 (36%), Gaps = 49/239 (20%)
Query: 95 RYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIA 154
R + + P+ L LQ + L ELP + L + + IA
Sbjct: 89 RSVPLPQFPDQAFRLSHLQHXTIDAA-GLXELPDTXQQFAGLETLTLARNPLRALPASIA 147
Query: 155 CLSSLRSLIISHCWNLEYLFEHI------GQLSGLRSL--ILVDCPSLISLPSAVKCLSS 206
L+ LR L I C L L E + G+ GL +L + ++ + SLP+++ L
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ- 206
Query: 207 SETLILIDCKSLNL-NLNIEMEGEGSHHDRDNTRTHLQKLFVSGXXXXXXXXXXXXXGST 265
+ KSL + N + G HH L KL
Sbjct: 207 -------NLKSLKIRNSPLSALGPAIHH--------LPKL-------------------- 231
Query: 266 KTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKEC 324
+ L G N+ + G L+ L++ C L +LP DIH LT L+ L ++ C
Sbjct: 232 EELDLRGCTALRNYPPIFGGRA---PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 42 LFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKK 101
L S+ E T + I+ Q L+ L + +S + L I +L + LDL ++
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 102 LPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRS 161
P L+ LIL+ C L LP DI L L + L G LS L S
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL---------EKLDLRGCVNLSRLPS 295
Query: 162 LI 163
LI
Sbjct: 296 LI 297
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 268 LQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPAL 327
L++ GI P S+ +L+ L++L I LS+L IHHL L+ L ++ C AL
Sbjct: 190 LEWTGIRSLP------ASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTAL 242
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 42 LFSINDENTSESFFTSCISKSQFLRVLDLDDST-IEVLPREIGNLKHMRYLDLSRYCQIK 100
L S+ N+ S I L LDL T + P G ++ L L +
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
Query: 101 KLPNSICELQSLQTLILRGCLKLEELPKDIRYLVS 135
LP I L L+ L LRGC+ L LP I L +
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 70 LDDSTIEVLP-REIGNLKHMRYLDLSRYCQIKKL-PNSICELQSLQTLILRGCLKLEELP 127
L+ +TI+V+P K +R +DLS QI +L P++ L+SL +L+L G K+ ELP
Sbjct: 39 LEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELP 96
Query: 128 KDI 130
K +
Sbjct: 97 KSL 99
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 70 LDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKL-PNSICELQSLQTLILRGCLKLEELP 127
L+ +TI+V+P K +R +DLS QI +L P++ L+SL +L+L G K+ ELP
Sbjct: 39 LEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG-NKITELP 96
Query: 128 KDI 130
K +
Sbjct: 97 KSL 99
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 56 TSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSR 95
++ I K FL L L+ +++ LP EI NL ++R LDLS
Sbjct: 240 SANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH 279
>pdb|2R4I|A Chain A, Crystal Structure Of A Ntf2-Like Protein (Chu_1428) From
Cytophaga Hutchinsonii Atcc 33406 At 1.60 A Resolution
pdb|2R4I|B Chain B, Crystal Structure Of A Ntf2-Like Protein (Chu_1428) From
Cytophaga Hutchinsonii Atcc 33406 At 1.60 A Resolution
pdb|2R4I|C Chain C, Crystal Structure Of A Ntf2-Like Protein (Chu_1428) From
Cytophaga Hutchinsonii Atcc 33406 At 1.60 A Resolution
pdb|2R4I|D Chain D, Crystal Structure Of A Ntf2-Like Protein (Chu_1428) From
Cytophaga Hutchinsonii Atcc 33406 At 1.60 A Resolution
Length = 123
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 190 DCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQ--KLF 246
D + S A++ + S+ +I I ++ +++NIE++GE H DNT +L+ KLF
Sbjct: 50 DIAAYSSGKIALRAVVPSDYIIRIIHDTVVVSVNIEIKGEYXEHTLDNTFRYLRVWKLF 108
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 68 LDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPN-SICELQSLQTLILRG----CLK 122
L LD + ++P+E+ N KH+ +DLS +I L N S + L TLIL C+
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 123 LEELPKDIRYLVSLRMFVVTTKQKS-LQESGIACLSSLRSLIIS 165
P+ L SLR+ + S + E LS+L L I
Sbjct: 95 ----PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 19/151 (12%)
Query: 11 KRVRHLSFVSASASR-NDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLD 69
+++ HL F ++ + ++FS LS LR + I I+ +T +F + L VL
Sbjct: 420 EQLEHLDFQHSNLKQMSEFSVFLS-LRNL--IYLDISHTHTRVAF-NGIFNGLSSLEVLK 475
Query: 70 LDDSTIE--VLPREIGNLKHMRYLDLSRYCQIKKL-PNSICELQSLQTLIL--RGCLKLE 124
+ ++ + LP L+++ +LDLS+ CQ+++L P + L SLQ L + L+
Sbjct: 476 MAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 534
Query: 125 ELPKDIRYLVSLRMF------VVTTKQKSLQ 149
P + L SL++ ++T+K++ LQ
Sbjct: 535 TFP--YKCLNSLQVLDYSLNHIMTSKKQELQ 563
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 56 TSCISKSQFLRVLDLDDSTIEV---LPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSL 112
T C+ K + L+ LDL S IE ++ NL+H++YL+LS E L
Sbjct: 342 TRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYN-----------EPLGL 390
Query: 113 QTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEY 172
+ + C +LE L V+ V Q L LR L +SHC L+
Sbjct: 391 EDQAFKECPQLELLD------VAFTHLHVKAPHSPFQN-----LHLLRVLNLSHCL-LDT 438
Query: 173 LFEHIGQLSGLRSLILVDCP------SLISLPSAVKCLSSSETLILIDCKSLNLN 221
+H+ L+GL+ L ++ IS + ++ + S E LIL C L+++
Sbjct: 439 SNQHL--LAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSID 491
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 11 KRVRHLSFVSASASR-NDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLD 69
+++ HL F ++ + ++FS LS LR + I I+ +T +F + L VL
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLS-LRNL--IYLDISHTHTRVAF-NGIFNGLSSLEVLK 451
Query: 70 LDDSTIE--VLPREIGNLKHMRYLDLSRYCQIKKL-PNSICELQSLQTLIL--RGCLKLE 124
+ ++ + LP L+++ +LDLS+ CQ+++L P + L SLQ L + L+
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510
Query: 125 ELPKDIRYLVSLRMF------VVTTKQKSLQE 150
P + L SL++ ++T+K++ LQ
Sbjct: 511 TFP--YKCLNSLQVLDYSLNHIMTSKKQELQH 540
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 65 LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICE-LQSLQTLILR 118
++VLDL + I+ +P+++ L+ ++ L+++ Q+K +P+ I + L SLQ + L
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLH 476
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 65 LRVLDLDDSTIEVLPREI-GNLKHMRYLDLSRYCQIKKLPNSICE-LQSLQTLILRGCLK 122
L+ L L + + LP + +L + LDL Q+ LP+++ + L L+ L + C K
Sbjct: 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFM-CCNK 123
Query: 123 LEELPKDIRYLVSLRMFVVTTKQ-KSLQESGIACLSSL-RSLIISHCWNLE 171
L ELP+ I L L + Q KS+ LSSL + + + W+ E
Sbjct: 124 LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 11 KRVRHLSFVSASASR-NDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLD 69
+++ HL F ++ + ++FS LS LR + I I+ +T +F + L VL
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLS-LRNL--IYLDISHTHTRVAF-NGIFNGLSSLEVLK 156
Query: 70 LDDSTIE--VLPREIGNLKHMRYLDLSRYCQIKKL-PNSICELQSLQTLIL--RGCLKLE 124
+ ++ + LP L+++ +LDLS+ CQ+++L P + L SLQ L + L+
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215
Query: 125 ELPKDIRYLVSLRMF------VVTTKQKSLQE 150
P + L SL++ ++T+K++ LQ
Sbjct: 216 TFP--YKCLNSLQVLDYSLNHIMTSKKQELQH 245
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 65 LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICE-LQSLQTLILR 118
++VLDL ++ I +P+++ +L+ ++ L+++ Q+K +P+ + + L SLQ + L
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLH 505
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 11 KRVRHLSFVSASASR-NDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLD 69
+++ HL F ++ + ++FS LS LR + I I+ +T +F + L VL
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLS-LRNL--IYLDISHTHTRVAF-NGIFNGLSSLEVLK 451
Query: 70 LDDSTIE--VLPREIGNLKHMRYLDLSRYCQIKKL-PNSICELQSLQTLILRGCLKLEEL 126
+ ++ + LP L+++ +LDLS+ CQ+++L P + L SLQ L + +L+ +
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMASN-QLKSV 509
Query: 127 PKDI 130
P I
Sbjct: 510 PDGI 513
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 51 SESFFTSCISKSQFLRVLDLDDSTIEVLPREI--GNLKHMRYLDLSRYCQIKKLPNSICE 108
SE FFTSC ++S +L T E R I ++H L+ +Y +K
Sbjct: 62 SEIFFTSCATES-INWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVP 120
Query: 109 LQSLQTLILRGCLKLEELPK 128
+ S RG +KLEEL K
Sbjct: 121 VDS------RGVVKLEELEK 134
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 51 SESFFTSCISKSQFLRVLDLDDSTIEVLPREI--GNLKHMRYLDLSRYCQIKKLPNSICE 108
SE FFTSC ++S +L T E R I ++H L+ +Y K
Sbjct: 62 SEIFFTSCATES-INWILKTVAETFEKRKRTIITTPIEHKAVLETXKYLSXKGFKVKYVP 120
Query: 109 LQSLQTLILRGCLKLEELPK 128
+ S RG +KLEEL K
Sbjct: 121 VDS------RGVVKLEELEK 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,135,392
Number of Sequences: 62578
Number of extensions: 316721
Number of successful extensions: 621
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 38
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)