Query 039007
Match_columns 360
No_of_seqs 181 out of 2396
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 05:25:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-29 2.5E-34 257.5 18.7 309 11-325 140-463 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.6E-29 3.5E-34 256.5 19.4 297 10-324 68-366 (968)
3 PLN03210 Resistant to P. syrin 99.9 1.2E-23 2.7E-28 214.6 17.7 291 8-329 586-908 (1153)
4 KOG4194 Membrane glycoprotein 99.9 3.7E-25 8E-30 197.0 2.7 300 9-328 123-430 (873)
5 KOG0444 Cytoskeletal regulator 99.9 8.4E-26 1.8E-30 202.9 -3.8 307 11-328 55-376 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 5.7E-26 1.2E-30 203.9 -5.3 298 7-328 22-353 (1255)
7 KOG4194 Membrane glycoprotein 99.9 6.9E-24 1.5E-28 189.0 6.5 341 6-356 47-405 (873)
8 PLN03210 Resistant to P. syrin 99.9 8.6E-22 1.9E-26 201.1 19.7 309 11-329 532-884 (1153)
9 KOG0472 Leucine-rich repeat pr 99.8 1E-22 2.3E-27 174.0 -7.6 125 62-191 182-307 (565)
10 KOG0472 Leucine-rich repeat pr 99.8 3.5E-21 7.6E-26 164.8 -6.7 267 36-328 45-311 (565)
11 KOG0618 Serine/threonine phosp 99.7 3.2E-19 7E-24 167.2 0.1 139 158-300 242-440 (1081)
12 cd00116 LRR_RI Leucine-rich re 99.7 3.4E-18 7.4E-23 152.4 4.1 285 15-325 2-318 (319)
13 PRK15387 E3 ubiquitin-protein 99.7 4.8E-16 1E-20 149.3 14.9 252 15-325 205-456 (788)
14 PRK15387 E3 ubiquitin-protein 99.7 2.6E-16 5.6E-21 151.1 12.1 249 4-308 215-463 (788)
15 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-17 3.2E-22 148.3 0.3 259 40-329 2-293 (319)
16 PRK15370 E3 ubiquitin-protein 99.6 1.3E-15 2.7E-20 147.1 11.6 245 37-326 179-427 (754)
17 KOG0618 Serine/threonine phosp 99.6 7.4E-17 1.6E-21 151.6 -0.8 271 34-324 43-320 (1081)
18 PRK15370 E3 ubiquitin-protein 99.6 3.7E-15 8.1E-20 143.9 10.1 248 10-303 177-428 (754)
19 KOG4237 Extracellular matrix p 99.6 3.5E-17 7.5E-22 140.2 -4.2 135 5-144 61-198 (498)
20 KOG0617 Ras suppressor protein 99.6 2.8E-17 6.1E-22 125.3 -4.8 165 32-203 29-194 (264)
21 KOG0617 Ras suppressor protein 99.6 4E-17 8.6E-22 124.5 -4.9 177 11-195 33-213 (264)
22 KOG4658 Apoptotic ATPase [Sign 99.5 2E-14 4.3E-19 141.0 7.3 266 11-293 523-797 (889)
23 KOG4341 F-box protein containi 99.5 1.3E-15 2.8E-20 131.6 -3.9 301 37-353 139-459 (483)
24 KOG4237 Extracellular matrix p 99.4 9.3E-15 2E-19 125.5 -4.9 273 37-326 68-358 (498)
25 KOG4341 F-box protein containi 99.3 4.1E-14 8.9E-19 122.4 -3.5 285 40-333 114-420 (483)
26 KOG1909 Ran GTPase-activating 99.3 8.1E-13 1.7E-17 112.1 2.5 244 27-302 21-310 (382)
27 KOG4658 Apoptotic ATPase [Sign 99.3 1.7E-12 3.6E-17 127.7 4.8 269 11-299 545-828 (889)
28 KOG2120 SCF ubiquitin ligase, 99.1 1.7E-12 3.7E-17 107.9 -5.2 180 134-324 185-373 (419)
29 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.5E-15 102.0 2.0 181 12-193 122-313 (505)
30 KOG1909 Ran GTPase-activating 99.0 6.5E-11 1.4E-15 100.7 0.2 238 55-326 22-310 (382)
31 PF14580 LRR_9: Leucine-rich r 99.0 5.2E-10 1.1E-14 88.9 4.5 108 32-147 15-126 (175)
32 KOG2120 SCF ubiquitin ligase, 99.0 6.3E-11 1.4E-15 98.7 -0.9 203 11-215 159-373 (419)
33 KOG3207 Beta-tubulin folding c 99.0 6.9E-11 1.5E-15 103.3 -0.7 133 84-218 119-259 (505)
34 PF14580 LRR_9: Leucine-rich r 99.0 5.5E-10 1.2E-14 88.7 4.3 128 59-190 15-149 (175)
35 KOG0532 Leucine-rich repeat (L 99.0 2.7E-11 5.8E-16 109.1 -4.0 170 37-216 76-245 (722)
36 KOG0532 Leucine-rich repeat (L 98.9 7.4E-11 1.6E-15 106.4 -4.8 167 16-193 80-246 (722)
37 COG4886 Leucine-rich repeat (L 98.9 2.9E-09 6.4E-14 97.7 5.4 200 40-260 97-297 (394)
38 COG4886 Leucine-rich repeat (L 98.8 2.1E-09 4.7E-14 98.6 4.0 181 30-219 110-291 (394)
39 KOG1259 Nischarin, modulator o 98.7 5.9E-09 1.3E-13 87.3 2.3 229 54-304 173-413 (490)
40 KOG1259 Nischarin, modulator o 98.7 2.5E-09 5.4E-14 89.5 -0.3 128 86-218 284-412 (490)
41 PLN03150 hypothetical protein; 98.7 5.8E-08 1.3E-12 93.7 7.6 104 65-168 420-526 (623)
42 PLN03150 hypothetical protein; 98.6 9.2E-08 2E-12 92.4 7.8 107 37-146 419-527 (623)
43 PF13855 LRR_8: Leucine rich r 98.5 1.1E-07 2.4E-12 62.0 2.9 59 266-325 1-60 (61)
44 PF13855 LRR_8: Leucine rich r 98.4 2.9E-07 6.2E-12 60.0 3.4 58 36-96 1-59 (61)
45 KOG0531 Protein phosphatase 1, 98.3 1.5E-07 3.2E-12 86.9 0.6 126 34-167 70-196 (414)
46 COG5238 RNA1 Ran GTPase-activa 98.3 3.6E-07 7.8E-12 75.7 2.2 243 30-304 24-317 (388)
47 KOG1947 Leucine rich repeat pr 98.2 2.5E-07 5.3E-12 87.3 0.3 228 84-333 186-446 (482)
48 KOG0531 Protein phosphatase 1, 98.2 1.3E-07 2.8E-12 87.3 -1.6 129 60-193 69-198 (414)
49 KOG3665 ZYG-1-like serine/thre 98.2 7.6E-07 1.6E-11 86.1 3.6 80 37-119 123-204 (699)
50 KOG2982 Uncharacterized conser 98.2 1.6E-06 3.4E-11 72.9 4.4 88 57-144 65-156 (418)
51 KOG1859 Leucine-rich repeat pr 98.1 1.2E-07 2.5E-12 88.6 -4.7 20 30-49 103-122 (1096)
52 PRK15386 type III secretion pr 98.1 2.4E-05 5.3E-10 70.2 9.8 32 266-300 156-187 (426)
53 KOG3665 ZYG-1-like serine/thre 98.0 3.8E-06 8.2E-11 81.4 4.1 132 11-147 122-263 (699)
54 KOG1947 Leucine rich repeat pr 98.0 8.6E-07 1.9E-11 83.6 -0.7 43 263-305 398-442 (482)
55 PRK15386 type III secretion pr 98.0 3.8E-05 8.2E-10 69.0 9.7 61 62-127 51-111 (426)
56 KOG2982 Uncharacterized conser 98.0 1.4E-06 3.1E-11 73.2 -0.1 84 108-191 69-156 (418)
57 KOG1859 Leucine-rich repeat pr 98.0 1.4E-07 3.1E-12 88.1 -7.0 44 170-215 176-219 (1096)
58 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.9E-10 47.9 3.1 33 64-96 2-34 (44)
59 PF12799 LRR_4: Leucine Rich r 97.6 4E-05 8.6E-10 45.9 2.4 36 266-302 1-36 (44)
60 COG5238 RNA1 Ran GTPase-activa 97.6 0.00013 2.8E-09 61.0 5.5 204 11-216 30-283 (388)
61 KOG2123 Uncharacterized conser 97.3 1.8E-05 3.9E-10 66.1 -2.7 100 34-140 17-123 (388)
62 KOG4579 Leucine-rich repeat (L 97.3 3.3E-05 7.2E-10 57.6 -1.5 109 38-149 29-138 (177)
63 KOG2123 Uncharacterized conser 97.2 2.1E-05 4.4E-10 65.8 -3.2 97 12-116 20-123 (388)
64 KOG1644 U2-associated snRNP A' 97.2 0.00057 1.2E-08 54.7 4.6 102 64-168 43-151 (233)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00011 2.3E-09 61.1 0.5 58 62-120 42-101 (260)
66 KOG1644 U2-associated snRNP A' 97.1 0.00065 1.4E-08 54.3 4.5 103 37-145 43-151 (233)
67 KOG4579 Leucine-rich repeat (L 96.9 0.00015 3.3E-09 54.2 -0.8 109 15-128 31-140 (177)
68 KOG2739 Leucine-rich acidic nu 96.8 0.00029 6.3E-09 58.6 0.1 105 84-190 41-152 (260)
69 PF13306 LRR_5: Leucine rich r 96.5 0.0072 1.6E-07 45.7 6.1 81 31-118 7-89 (129)
70 PF13306 LRR_5: Leucine rich r 96.2 0.024 5.2E-07 42.8 7.2 102 58-165 7-111 (129)
71 KOG3864 Uncharacterized conser 95.5 0.0032 6.9E-08 50.5 -0.3 64 238-301 123-187 (221)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.0074 1.6E-07 29.9 0.9 18 65-82 2-19 (22)
73 KOG3864 Uncharacterized conser 94.5 0.0058 1.3E-07 49.0 -1.4 87 241-329 102-191 (221)
74 PF13504 LRR_7: Leucine rich r 93.5 0.056 1.2E-06 24.8 1.5 12 65-76 3-14 (17)
75 smart00367 LRR_CC Leucine-rich 91.7 0.09 1.9E-06 27.2 0.9 18 313-330 1-18 (26)
76 KOG4308 LRR-containing protein 90.9 0.0036 7.7E-08 58.4 -8.4 62 266-328 376-446 (478)
77 KOG4308 LRR-containing protein 90.0 0.0038 8.1E-08 58.3 -9.1 37 13-49 89-128 (478)
78 KOG0473 Leucine-rich repeat pr 86.1 0.046 9.9E-07 45.1 -3.9 92 82-175 38-129 (326)
79 KOG0473 Leucine-rich repeat pr 85.8 0.012 2.5E-07 48.5 -7.4 87 30-121 36-122 (326)
80 smart00369 LRR_TYP Leucine-ric 85.4 0.57 1.2E-05 24.0 1.3 18 63-80 2-19 (26)
81 smart00370 LRR Leucine-rich re 85.4 0.57 1.2E-05 24.0 1.3 18 63-80 2-19 (26)
82 PF13516 LRR_6: Leucine Rich r 77.1 0.89 1.9E-05 22.7 0.2 11 86-96 2-12 (24)
83 smart00364 LRR_BAC Leucine-ric 70.8 2.8 6E-05 21.6 1.1 17 64-80 3-19 (26)
84 KOG3763 mRNA export factor TAP 65.5 2.6 5.7E-05 39.5 0.7 65 236-304 214-284 (585)
85 KOG3763 mRNA export factor TAP 58.2 3.5 7.5E-05 38.8 0.1 35 181-215 218-254 (585)
86 smart00365 LRR_SD22 Leucine-ri 55.2 9.7 0.00021 19.6 1.4 13 64-76 3-15 (26)
87 smart00368 LRR_RI Leucine rich 51.4 11 0.00024 19.6 1.4 12 64-75 3-14 (28)
88 PF05725 FNIP: FNIP Repeat; I 42.1 40 0.00086 19.7 2.9 14 6-19 7-20 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.2e-29 Score=257.52 Aligned_cols=309 Identities=19% Similarity=0.163 Sum_probs=165.4
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcCCCCCCCcC
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPREIGNLKHMR 89 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~ 89 (360)
++++.|++.+|.+.. .++..+..+++|++|++++|.+ ...++..+.++++|++|++++|.+. .+|..+.++++|+
T Consensus 140 ~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~l---~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 140 PNLETLDLSNNMLSG-EIPNDIGSFSSLKVLDLGGNVL---VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred CCCCEEECcCCcccc-cCChHHhcCCCCCEEECccCcc---cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 345555555555443 3444555666666666666554 3334445556666666666666655 4555566666666
Q ss_pred eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccc-ccccCCCCCCCcEeeccCCC
Q 039007 90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSL-QESGIACLSSLRSLIISHCW 168 (360)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~ 168 (360)
+|++++|...+.+|..++++++|+.|++++|...+.+|..++.+++|+.|++++|.+.. .+..+..+++|+.|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 66666654444555556666666666666655555556566666666666666665542 34455556666666666655
Q ss_pred chhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccc-------------cccCCCCCCCC
Q 039007 169 NLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNI-------------EMEGEGSHHDR 235 (360)
Q Consensus 169 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~~~~ 235 (360)
....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|......+.. .....+..+..
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 44455555566666666666666555555555666666666666655432211100 00000001111
Q ss_pred CCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCc
Q 039007 236 DNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTT 315 (360)
Q Consensus 236 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 315 (360)
.....+|+.|++++|.....+|..+ ..+++|+.|++++|.....+|..+..+++|+.|++++|.+.+.++..+..+++
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 1222334444444444444444444 44555555555555444455555555566666666665555555555555566
Q ss_pred cceecccCCh
Q 039007 316 LKTLSIKECP 325 (360)
Q Consensus 316 L~~L~l~~c~ 325 (360)
|++|++++|.
T Consensus 454 L~~L~L~~n~ 463 (968)
T PLN00113 454 LQMLSLARNK 463 (968)
T ss_pred CcEEECcCce
Confidence 6666666664
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.6e-29 Score=256.46 Aligned_cols=297 Identities=21% Similarity=0.233 Sum_probs=214.1
Q ss_pred CCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcCCCCCCCc
Q 039007 10 PKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPREIGNLKHM 88 (360)
Q Consensus 10 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L 88 (360)
..+|+.|++.++.+.+ .+...+..+++|++|++++|.+. ...+...+..+++|++|++++|.+. .+|. ..+++|
T Consensus 68 ~~~v~~L~L~~~~i~~-~~~~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L 142 (968)
T PLN00113 68 SSRVVSIDLSGKNISG-KISSAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL 142 (968)
T ss_pred CCcEEEEEecCCCccc-cCChHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECcCCccccccCc--cccCCC
Confidence 3589999999998887 56778999999999999999863 2334445668899999999998877 5553 457888
Q ss_pred CeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccc-ccccCCCCCCCcEeeccCC
Q 039007 89 RYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSL-QESGIACLSSLRSLIISHC 167 (360)
Q Consensus 89 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~ 167 (360)
++|++++|...+.+|..++.+++|+.|++++|...+.+|..++.+++|++|++++|.+.. .|..+..+++|+.|++.+|
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 888888886666778778888888888888887777788888888888888888887653 4667788888888888887
Q ss_pred CchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEe
Q 039007 168 WNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFV 247 (360)
Q Consensus 168 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 247 (360)
.....+|..++.+++|+.|++++|.....+|..++.+++|++|++++|..... .+.....+.+|+.|++
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-----------IPPSIFSLQKLISLDL 291 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-----------CchhHhhccCcCEEEC
Confidence 76667777788888888888888876667777788888888888877653321 1122334456666666
Q ss_pred cCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCC
Q 039007 248 SGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKEC 324 (360)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 324 (360)
++|.....+|.++ ..+++|++|++++|.....+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 292 s~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 292 SDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred cCCeeccCCChhH--cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 6665555555555 55666666666666554555555666666666666666655555555555666666666555
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.2e-23 Score=214.57 Aligned_cols=291 Identities=22% Similarity=0.298 Sum_probs=208.7
Q ss_pred CCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCC-CcccCcCCCCCC
Q 039007 8 SIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST-IEVLPREIGNLK 86 (360)
Q Consensus 8 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~ 86 (360)
.+|+.++.|.+.++.+.. ++..| ...+|+.|++.++.+. .++..+..+++|+.|+++++. +..+| .++.++
T Consensus 586 ~lp~~Lr~L~~~~~~l~~--lP~~f-~~~~L~~L~L~~s~l~----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~ 657 (1153)
T PLN03210 586 YLPPKLRLLRWDKYPLRC--MPSNF-RPENLVKLQMQGSKLE----KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMAT 657 (1153)
T ss_pred hcCcccEEEEecCCCCCC--CCCcC-CccCCcEEECcCcccc----ccccccccCCCCCEEECCCCCCcCcCC-ccccCC
Confidence 457778888888776644 33333 4577888888877653 223345677888888887765 44555 467778
Q ss_pred CcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccc-cccccCCCCCCCcEeecc
Q 039007 87 HMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKS-LQESGIACLSSLRSLIIS 165 (360)
Q Consensus 87 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~ 165 (360)
+|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+++|+.|++++|... ..|. ..++|+.|++.
T Consensus 658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~ 733 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLD 733 (1153)
T ss_pred cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecC
Confidence 88888888877777778777888888888888777777777654 5677777777766422 1111 12344555554
Q ss_pred CCCchhhhHh------------------------------hhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007 166 HCWNLEYLFE------------------------------HIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC 215 (360)
Q Consensus 166 ~~~~~~~~~~------------------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 215 (360)
+|. ++.+|. ....+++|+.|++++|.....+|..++++++|+.|++++|
T Consensus 734 ~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 734 ETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred CCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 432 122221 1122468889999998888889999999999999999999
Q ss_pred cCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccc
Q 039007 216 KSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETL 295 (360)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 295 (360)
..+...+ ....+++|+.|++++|..+..+|.. .++|++|+|++| .++.+|..+..+++|+.|
T Consensus 813 ~~L~~LP------------~~~~L~sL~~L~Ls~c~~L~~~p~~-----~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L 874 (1153)
T PLN03210 813 INLETLP------------TGINLESLESLDLSGCSRLRTFPDI-----STNISDLNLSRT-GIEEVPWWIEKFSNLSFL 874 (1153)
T ss_pred CCcCeeC------------CCCCccccCEEECCCCCcccccccc-----ccccCEeECCCC-CCccChHHHhcCCCCCEE
Confidence 8765432 1125678999999999887776643 368999999987 677888888999999999
Q ss_pred cccccccccCCCccccCCCccceecccCChhHHh
Q 039007 296 LISACRKLSSLPEDIHHLTTLKTLSIKECPALWE 329 (360)
Q Consensus 296 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~ 329 (360)
++++|+.++.+|..+..++.|+.+++.+|+.++.
T Consensus 875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 875 DMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 9999998888888888889999999999987763
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=3.7e-25 Score=197.05 Aligned_cols=300 Identities=18% Similarity=0.133 Sum_probs=214.4
Q ss_pred CCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCC
Q 039007 9 IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKH 87 (360)
Q Consensus 9 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~ 87 (360)
.+.+++.|+|.+|-+.. .-...++.++.||+|+|+.|.+. ......|..-.++++|+++.|.++.+. ..|..+.+
T Consensus 123 ~sghl~~L~L~~N~I~s-v~se~L~~l~alrslDLSrN~is---~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISS-VTSEELSALPALRSLDLSRNLIS---EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred cccceeEEeeecccccc-ccHHHHHhHhhhhhhhhhhchhh---cccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 34678888888887776 55667888888888888888763 222234556667888888888887543 34677778
Q ss_pred cCeEeccccccccccc-hhhhcCCccceEeeccccCcCcC-CccccccccccEEEEeccccccc-cccCCCCCCCcEeec
Q 039007 88 MRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEEL-PKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLII 164 (360)
Q Consensus 88 L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l 164 (360)
|.+|.++.| .++.+| ..|.++++|+.|+|..|. +..+ .-.|..+++|+.|.+..|.+... ...|..+.++++|++
T Consensus 199 L~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 199 LLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred heeeecccC-cccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 888888877 556666 445568888888888763 3222 23467788888888888877655 345667888888888
Q ss_pred cCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccce
Q 039007 165 SHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQK 244 (360)
Q Consensus 165 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 244 (360)
..|.....-..++.+++.|+.|+++.|....--++.+.-+++|+.|+++++..... ....+..+..|+.
T Consensus 277 ~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l-----------~~~sf~~L~~Le~ 345 (873)
T KOG4194|consen 277 ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL-----------DEGSFRVLSQLEE 345 (873)
T ss_pred ccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC-----------ChhHHHHHHHhhh
Confidence 88755554455677889999999999876665667778889999999988764432 2233445568899
Q ss_pred EEecCccCCCCchhhhhcCCCCCCcEEecccCCCcc---cccccccCccccccccccccccccCCC-ccccCCCccceec
Q 039007 245 LFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFM---ALQGSLKDLEALETLLISACRKLSSLP-EDIHHLTTLKTLS 320 (360)
Q Consensus 245 L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ 320 (360)
|+|+.|. +..+....+ ..+++|++|+|+.|...- +-...|.++++|+.|++.+|+ ++.+| ..|..+++|++|+
T Consensus 346 LnLs~Ns-i~~l~e~af-~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 346 LNLSHNS-IDHLAEGAF-VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred hcccccc-hHHHHhhHH-HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceec
Confidence 9999886 445544433 677899999999885432 444567889999999999988 44554 4577899999999
Q ss_pred ccCChhHH
Q 039007 321 IKECPALW 328 (360)
Q Consensus 321 l~~c~~~~ 328 (360)
+.+|+-.+
T Consensus 423 L~~NaiaS 430 (873)
T KOG4194|consen 423 LGDNAIAS 430 (873)
T ss_pred CCCCccee
Confidence 99996443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=8.4e-26 Score=202.88 Aligned_cols=307 Identities=26% Similarity=0.318 Sum_probs=177.7
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY 90 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 90 (360)
..++.|++.+|++.. +.+.+..++.||.+.+..|.+. ...+|..+-++..|..|+++.|++.+.|..+..-+++-.
T Consensus 55 qkLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~LK--nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNNLK--NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred hhhhhhhhhhhhhHh--hhhhhccchhhHHHhhhccccc--cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 345666666666544 5666777777777777777654 333455566677777777777777777777766677777
Q ss_pred Eeccccccccccchh-hhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccc-cccCCCCCCCcEeeccCCC
Q 039007 91 LDLSRYCQIKKLPNS-ICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLIISHCW 168 (360)
Q Consensus 91 L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~ 168 (360)
|++++| .++.+|.. +-+++.|-.|++++| ....+|..+.++..|+.|.+++|.+... ...+-.+++|+.|.+++..
T Consensus 131 LNLS~N-~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 131 LNLSYN-NIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEcccC-ccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 777765 55666643 346666667777664 5556666666666667666666654432 1222333344444444432
Q ss_pred c-hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCcccccccccc-----------CCCCCCCCC
Q 039007 169 N-LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEME-----------GEGSHHDRD 236 (360)
Q Consensus 169 ~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----------~~~~~~~~~ 236 (360)
. ...+|..+..+.+|..++++.| .+..+|+.+..+++|+.|.++++...........+ ..-..+...
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~av 287 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAV 287 (1255)
T ss_pred chhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHH
Confidence 1 2234444444444444444443 33344444444444444444444322211100000 000022233
Q ss_pred CCCCccceEEecCccC-CCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCc
Q 039007 237 NTRTHLQKLFVSGLKQ-LLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTT 315 (360)
Q Consensus 237 ~~~~~L~~L~L~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 315 (360)
..+++|++|.+.+|+. +..+|..+ +.+.+|+.+..++| .++-+|+.+..|+.|+.|.++.|+.+ .+|+.+.-++.
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGI--GKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~ 363 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGI--GKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPD 363 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccch--hhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee-echhhhhhcCC
Confidence 4445666666665542 24445555 66677777777765 67777888888888888888887755 46777777888
Q ss_pred cceecccCChhHH
Q 039007 316 LKTLSIKECPALW 328 (360)
Q Consensus 316 L~~L~l~~c~~~~ 328 (360)
|++|++..||.+.
T Consensus 364 l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 364 LKVLDLRENPNLV 376 (1255)
T ss_pred cceeeccCCcCcc
Confidence 8888888887655
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=5.7e-26 Score=203.95 Aligned_cols=298 Identities=19% Similarity=0.245 Sum_probs=218.2
Q ss_pred cCCCCc------ceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc--cc
Q 039007 7 QSIPKR------VRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE--VL 78 (360)
Q Consensus 7 ~~~~~~------l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~ 78 (360)
+.+|.. ++-|.+....+.. ++..++.|.+|.+|.+.+|.+ ..+...+..++.|+.+.++.|++. .+
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L----~~vhGELs~Lp~LRsv~~R~N~LKnsGi 95 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQL----ISVHGELSDLPRLRSVIVRDNNLKNSGI 95 (1255)
T ss_pred CcCchhHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhh----HhhhhhhccchhhHHHhhhccccccCCC
Confidence 456644 4455666666555 778899999999999999985 345666888999999999999987 78
Q ss_pred CcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcc-ccccccccEEEEeccccccccccCCCCC
Q 039007 79 PREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKD-IRYLVSLRMFVVTTKQKSLQESGIACLS 157 (360)
Q Consensus 79 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~ 157 (360)
|..+.++..|..|++++| .+++.|..+..-+++-.|++++| .+.++|.. +.++..|-.|+++.|++...|..+..+.
T Consensus 96 P~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred Cchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence 999999999999999998 78999999999999999999986 67788865 5688999999999999999998999999
Q ss_pred CCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCC-CcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCC
Q 039007 158 SLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPS-LISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRD 236 (360)
Q Consensus 158 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 236 (360)
.|+.|++++|.....-...+..++.|++|.+++... ...+|..+..+.+|..++++.++.-. .++..
T Consensus 174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~------------vPecl 241 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI------------VPECL 241 (1255)
T ss_pred hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc------------chHHH
Confidence 999999999866555445566788889999988753 45789999999999999999875432 33345
Q ss_pred CCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCcccccccccccccc--------------
Q 039007 237 NTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRK-------------- 302 (360)
Q Consensus 237 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------------- 302 (360)
....+|+.|+|++|... ++.... +...+|++|+++.| .++.+|..+..+++|+.|++.+|+.
T Consensus 242 y~l~~LrrLNLS~N~it-eL~~~~--~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKIT-ELNMTE--GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred hhhhhhheeccCcCcee-eeeccH--HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 55566777777776422 222211 23344555555554 3444555555555555555544442
Q ss_pred ----------ccCCCccccCCCccceecccCChhHH
Q 039007 303 ----------LSSLPEDIHHLTTLKTLSIKECPALW 328 (360)
Q Consensus 303 ----------~~~~~~~~~~~~~L~~L~l~~c~~~~ 328 (360)
+..+|+++..|+.|+.|.++.|..++
T Consensus 318 Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 318 LEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred hHHHHhhccccccCchhhhhhHHHHHhcccccceee
Confidence 33445555555666666665554433
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=6.9e-24 Score=189.01 Aligned_cols=341 Identities=18% Similarity=0.128 Sum_probs=202.0
Q ss_pred ccCCCCcceEEEeeeccccccchhhhhccC--ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCC
Q 039007 6 CQSIPKRVRHLSFVSASASRNDFSSLLSDL--RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIG 83 (360)
Q Consensus 6 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 83 (360)
+..+|...+.|+...+.++.-+.. .+.++ +.-+.|++++|.+. .+-...|.++++|+++.+..|.++.+|....
T Consensus 47 pa~c~c~~~lldcs~~~lea~~~~-~l~g~lp~~t~~LdlsnNkl~---~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~ 122 (873)
T KOG4194|consen 47 PATCPCNTRLLDCSDRELEAIDKS-RLKGFLPSQTQTLDLSNNKLS---HIDFEFFYNLPNLQEVNLNKNELTRIPRFGH 122 (873)
T ss_pred CCcCCCCceeeecCcccccccccc-ccCCcCccceeeeeccccccc---cCcHHHHhcCCcceeeeeccchhhhcccccc
Confidence 344566677777777766652222 22222 24556888888763 3334557788888888888888888887766
Q ss_pred CCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCc-cccccccccEEEEeccccccc-cccCCCCCCCcE
Q 039007 84 NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPK-DIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRS 161 (360)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~ 161 (360)
...+|+.|++.+|.+.+.-.+.+..++.|+.|+|+.| .+.++|. .+..-.++++|++++|.++.+ ...|..+.+|..
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~t 201 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLT 201 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchhee
Confidence 6777888888877333333456777888888888886 5555553 344556788888888887765 345667778888
Q ss_pred eeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccC-------------
Q 039007 162 LIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEG------------- 228 (360)
Q Consensus 162 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------------- 228 (360)
|.++.|...+--+..+..+++|+.|++..|+.-..-...+..+++|+.|.+..+......... |.|
T Consensus 202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~-Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA-FYGLEKMEHLNLETNR 280 (873)
T ss_pred eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc-eeeecccceeecccch
Confidence 888876444433445666888888888777532221233566777777777665443322111 000
Q ss_pred -CCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCC
Q 039007 229 -EGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLP 307 (360)
Q Consensus 229 -~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 307 (360)
..........+..|+.|++++|.....-++.. ..+++|+.|+|++|+..+--++.|..+..|++|.+++|.+..--.
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE 358 (873)
T ss_pred hhhhhcccccccchhhhhccchhhhheeecchh--hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence 00011123334455666666554332222322 456666666666664333334456666666666666665332111
Q ss_pred ccccCCCccceecccCChhHHhhcCCCCCCCCccccccceeeecccccc
Q 039007 308 EDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMTK 356 (360)
Q Consensus 308 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (360)
..+..+.+|++|+++.|.- ..+.+-....+..+..++.+.+.+|+++
T Consensus 359 ~af~~lssL~~LdLr~N~l--s~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNEL--SWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred hHHHHhhhhhhhcCcCCeE--EEEEecchhhhccchhhhheeecCceee
Confidence 2244466777777777642 1234444555666777888888888764
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=8.6e-22 Score=201.13 Aligned_cols=309 Identities=23% Similarity=0.340 Sum_probs=165.7
Q ss_pred CcceEEEeeeccccccc-hhhhhccCccccEEEEeccCCC---CcccchHHHhhcCC-CccEEEEeCCCCcccCcCCCCC
Q 039007 11 KRVRHLSFVSASASRND-FSSLLSDLRRVRTILFSINDEN---TSESFFTSCISKSQ-FLRVLDLDDSTIEVLPREIGNL 85 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l 85 (360)
..++.+.+....+.... ...+|.++++|+.|.+..+... .....++..+..++ .|+.|.+.++.+..+|..+ .+
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~ 610 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RP 610 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence 45666666544443322 2355777888888777654311 00111223333332 4666666665555555544 34
Q ss_pred CCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc-cccccccCCCCCCCcEeec
Q 039007 86 KHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ-KSLQESGIACLSSLRSLII 164 (360)
Q Consensus 86 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l 164 (360)
.+|+.|++.++ .+..++..+..+++|+.|+++++.....+|. +..+++|+.|++++|. ....|..+.++++|+.|++
T Consensus 611 ~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 55556666554 3444555455555566666655444444542 4455555666555543 2233445555555666665
Q ss_pred cCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCcccccccc----------------cc-
Q 039007 165 SHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIE----------------ME- 227 (360)
Q Consensus 165 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------~~- 227 (360)
.+|..++.+|..+ .+++|+.|++++|.....+|.. .++|++|++.++.......... +.
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccc
Confidence 5555555554433 4555555555555544444432 2344444444433111100000 00
Q ss_pred CCCC-CCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccc---
Q 039007 228 GEGS-HHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKL--- 303 (360)
Q Consensus 228 ~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--- 303 (360)
.... .......+++|+.|++++|.....+|..+ +++++|+.|++++|..++.+|... .+++|+.|++++|..+
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 0000 00111223467777777777777777776 677777777777777777666544 4566666666665443
Q ss_pred -----------------cCCCccccCCCccceecccCChhHHh
Q 039007 304 -----------------SSLPEDIHHLTTLKTLSIKECPALWE 329 (360)
Q Consensus 304 -----------------~~~~~~~~~~~~L~~L~l~~c~~~~~ 329 (360)
+.+|..+..+++|++|++.+|+.+..
T Consensus 842 p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 842 PDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred cccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc
Confidence 24556667788999999999987764
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=1e-22 Score=174.02 Aligned_cols=125 Identities=28% Similarity=0.347 Sum_probs=52.4
Q ss_pred CCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcccc-ccccccEEE
Q 039007 62 SQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIR-YLVSLRMFV 140 (360)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~ 140 (360)
++.|++|+...|.++.+|+.++.+..|..|++..| .+..+|+ |..|..|.+|+++.| .+..+|+... .++++..|+
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPe-f~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN-KIRFLPE-FPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc-ccccCCC-CCccHHHHHHHhccc-HHHhhHHHHhcccccceeee
Confidence 33344444444434444444444444444444433 3333332 344444444444432 3333333322 444444444
Q ss_pred EeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccC
Q 039007 141 VTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDC 191 (360)
Q Consensus 141 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 191 (360)
+..|++...|+.+..+++|++||+++| .++.+|..++.+ +|+.|-+.+|
T Consensus 259 LRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 259 LRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred ccccccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCC
Confidence 444444444444444444444444443 333444444444 4444444443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=3.5e-21 Score=164.77 Aligned_cols=267 Identities=27% Similarity=0.285 Sum_probs=176.7
Q ss_pred ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007 36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL 115 (360)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 115 (360)
..++.+.++.|.+. .+...+.++..|.+|.+.++.+..+|+.++.+..++.++++++ ....+|..++.+.+|..+
T Consensus 45 v~l~~lils~N~l~----~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE----VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKL 119 (565)
T ss_pred cchhhhhhccCchh----hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhh
Confidence 45677777777642 2223366777777777777777777777777777777777766 566677777777777777
Q ss_pred eeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCc
Q 039007 116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLI 195 (360)
Q Consensus 116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 195 (360)
+.+.| ....+|..++++..+..++...|++...|..+.++.++..+++.+|+. ..+|+..-.++.|+.|+.-.| ..+
T Consensus 120 ~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~N-~L~ 196 (565)
T KOG0472|consen 120 DCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNSN-LLE 196 (565)
T ss_pred hcccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccchh-hhh
Confidence 77765 344566677777777777777777777777777777777777777533 333333333777777776554 556
Q ss_pred ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEeccc
Q 039007 196 SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIED 275 (360)
Q Consensus 196 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 275 (360)
.+|+.++.+.+|+.|++..++... ...+..|..|+.++++.|. +..+|.... ..++.+..|++.+
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~~-------------lPef~gcs~L~Elh~g~N~-i~~lpae~~-~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIRF-------------LPEFPGCSLLKELHVGENQ-IEMLPAEHL-KHLNSLLVLDLRD 261 (565)
T ss_pred cCChhhcchhhhHHHHhhhccccc-------------CCCCCccHHHHHHHhcccH-HHhhHHHHh-cccccceeeeccc
Confidence 677777777777777776665332 1234555667777776654 445555442 5677777777777
Q ss_pred CCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChhHH
Q 039007 276 CPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALW 328 (360)
Q Consensus 276 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 328 (360)
| .+.++|..+.-+.+|.+||+++|. ++.+|..++++ .|+.|.+.|||.-+
T Consensus 262 N-klke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 262 N-KLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred c-ccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHH
Confidence 6 666777767677777777777766 44566667777 77777777776533
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=3.2e-19 Score=167.18 Aligned_cols=139 Identities=27% Similarity=0.206 Sum_probs=78.1
Q ss_pred CCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCC----------------------CcccCcccCCCCCCCEEeecCC
Q 039007 158 SLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPS----------------------LISLPSAVKCLSSSETLILIDC 215 (360)
Q Consensus 158 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----------------------~~~~~~~~~~~~~L~~L~l~~~ 215 (360)
+|++++++.+ .+..+|.++..|.+|+.++...|.. +..+|.......+|++|++..+
T Consensus 242 nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 242 NLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cceeeecchh-hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 4455555543 3445566677777777776655432 2255666777888888888765
Q ss_pred cCcccccc--------------------------------------ccccCCCCCCCCCCCCCccceEEecCccCCCCch
Q 039007 216 KSLNLNLN--------------------------------------IEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLP 257 (360)
Q Consensus 216 ~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 257 (360)
........ ..+.-++........+++|+.|+|++|. +..+|
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fp 399 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFP 399 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCC
Confidence 42211110 0111123334445556678888888875 44566
Q ss_pred hhhhcCCCCCCcEEecccCCCcccccccccCcccccccccccc
Q 039007 258 QWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISAC 300 (360)
Q Consensus 258 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 300 (360)
+... .++..|++|+|++| +++.+|..+..++.|++|...+|
T Consensus 400 as~~-~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 400 ASKL-RKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred HHHH-hchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCC
Confidence 5554 67777888888877 45545444444444444443333
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=3.4e-18 Score=152.38 Aligned_cols=285 Identities=18% Similarity=0.074 Sum_probs=138.3
Q ss_pred EEEeeeccccccchhhhhccCccccEEEEeccCCCCc-ccchHHHhhcCCCccEEEEeCCCCcc-------cCcCCCCCC
Q 039007 15 HLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTS-ESFFTSCISKSQFLRVLDLDDSTIEV-------LPREIGNLK 86 (360)
Q Consensus 15 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~l~ 86 (360)
+|+|.++.+++......++.++.|++|+++++.+... ...+...+...+.|+.++++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4666677776556666777777788888887765311 12344556666677777777665431 223344555
Q ss_pred CcCeEeccccccccccchhhhcCCc---cceEeeccccCcC----cCCcccccc-ccccEEEEeccccccccccCCCCCC
Q 039007 87 HMRYLDLSRYCQIKKLPNSICELQS---LQTLILRGCLKLE----ELPKDIRYL-VSLRMFVVTTKQKSLQESGIACLSS 158 (360)
Q Consensus 87 ~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~p~~~~~l-~~L~~L~l~~~~~~~~~~~~~~l~~ 158 (360)
+|+.|++++|......+..+..+.+ |+.|++++|...+ .+...+..+ ++|+.|++++|.+...
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--------- 152 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA--------- 152 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch---------
Confidence 6666666655443333333333333 6666665553331 111222333 4555555555544311
Q ss_pred CcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCc----ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCC
Q 039007 159 LRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLI----SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHD 234 (360)
Q Consensus 159 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 234 (360)
....+...+..+++|++|++++|.... .++..+..+++|++|++++|....... .....
T Consensus 153 ----------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-------~~l~~ 215 (319)
T cd00116 153 ----------SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-------SALAE 215 (319)
T ss_pred ----------HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-------HHHHH
Confidence 001222333344444444444443221 112222233445555554443211000 00001
Q ss_pred CCCCCCccceEEecCccCCCCchhhhh---cCCCCCCcEEecccCCCcc----cccccccCccccccccccccccccC--
Q 039007 235 RDNTRTHLQKLFVSGLKQLLDLPQWLL---QGSTKTLQFLGIEDCPNFM----ALQGSLKDLEALETLLISACRKLSS-- 305 (360)
Q Consensus 235 ~~~~~~~L~~L~L~~~~~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~-- 305 (360)
....+++|++|++++|.........+. ....+.|++|++++|.... .+...+..+++|+++++++|.+.++
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 122334455555555442211111110 0124678888888875431 3344455667888888888876643
Q ss_pred --CCccccCC-CccceecccCCh
Q 039007 306 --LPEDIHHL-TTLKTLSIKECP 325 (360)
Q Consensus 306 --~~~~~~~~-~~L~~L~l~~c~ 325 (360)
+...+... +.|+++++.++|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 296 QLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhhcCCchhhcccCCCC
Confidence 33334334 577888877664
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=4.8e-16 Score=149.30 Aligned_cols=252 Identities=23% Similarity=0.232 Sum_probs=137.5
Q ss_pred EEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEecc
Q 039007 15 HLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLS 94 (360)
Q Consensus 15 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 94 (360)
.|++..+.+.. +++.+. ++|+.|.+.+|.+... +. ..++|++|++++|.++.+|.. .++|+.|+++
T Consensus 205 ~LdLs~~~Lts--LP~~l~--~~L~~L~L~~N~Lt~L----P~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 205 VLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTSL----PA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred EEEcCCCCCCc--CCcchh--cCCCEEEccCCcCCCC----CC---CCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence 45555555543 333333 3566777776665321 11 235677777777766666542 3466667776
Q ss_pred ccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhH
Q 039007 95 RYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLF 174 (360)
Q Consensus 95 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 174 (360)
+| .+..+|.. ..+|+.|++.+| .+..+|.. .++|+.|++++|.+..++.. ..+|+.|++.+|. ++.+|
T Consensus 271 ~N-~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP 338 (788)
T PRK15387 271 SN-PLTHLPAL---PSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLP 338 (788)
T ss_pred CC-chhhhhhc---hhhcCEEECcCC-cccccccc---ccccceeECCCCccccCCCC---cccccccccccCc-ccccc
Confidence 65 34444442 245666667665 33345532 35677777777766655431 2345566666653 33333
Q ss_pred hhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCC
Q 039007 175 EHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLL 254 (360)
Q Consensus 175 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 254 (360)
.. ..+|+.|++++|. +..+|.. .++|+.|++.++.... .+ ....+|+.|++++|. +.
T Consensus 339 ~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~-LP--------------~l~~~L~~LdLs~N~-Lt 395 (788)
T PRK15387 339 TL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTS-LP--------------ALPSGLKELIVSGNR-LT 395 (788)
T ss_pred cc---ccccceEecCCCc-cCCCCCC---Ccccceehhhcccccc-Cc--------------ccccccceEEecCCc-cc
Confidence 21 2466777777663 3344432 2456666666543221 10 011356777777765 33
Q ss_pred CchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCCh
Q 039007 255 DLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP 325 (360)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 325 (360)
.+|.. .++|+.|++++|. +..+|.. ..+|+.|++++|++ +.+|..+..+++|+.|++++|+
T Consensus 396 ~LP~l-----~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 396 SLPVL-----PSELKELMVSGNR-LTSLPML---PSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCCCc-----ccCCCEEEccCCc-CCCCCcc---hhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCC
Confidence 44432 2567777777763 4455543 23566777777663 4567667677777777777774
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=2.6e-16 Score=151.11 Aligned_cols=249 Identities=21% Similarity=0.147 Sum_probs=183.4
Q ss_pred ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCC
Q 039007 4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIG 83 (360)
Q Consensus 4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 83 (360)
+.+..+|++++.|++..|.++. ++ ...++|++|++++|.+... +. ..++|+.|+++.|.+..+|...
T Consensus 215 sLP~~l~~~L~~L~L~~N~Lt~--LP---~lp~~Lk~LdLs~N~LtsL----P~---lp~sL~~L~Ls~N~L~~Lp~lp- 281 (788)
T PRK15387 215 TLPDCLPAHITTLVIPDNNLTS--LP---ALPPELRTLEVSGNQLTSL----PV---LPPGLLELSIFSNPLTHLPALP- 281 (788)
T ss_pred cCCcchhcCCCEEEccCCcCCC--CC---CCCCCCcEEEecCCccCcc----cC---cccccceeeccCCchhhhhhch-
Confidence 3456677899999999998876 22 1358999999999987422 22 2357899999999988777533
Q ss_pred CCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEee
Q 039007 84 NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLI 163 (360)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 163 (360)
..|+.|++++| .+..+|.. .++|+.|++++|. ...+|.. ..+|+.|++++|.+..+|. ...+|+.|+
T Consensus 282 --~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L~~LP~---lp~~Lq~Ld 348 (788)
T PRK15387 282 --SGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTSLPT---LPSGLQELS 348 (788)
T ss_pred --hhcCEEECcCC-cccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCccccccc---cccccceEe
Confidence 57889999988 56677753 4789999999974 4456653 2457788899998877653 235899999
Q ss_pred ccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccc
Q 039007 164 ISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQ 243 (360)
Q Consensus 164 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 243 (360)
+++|. ++.+|.. .++|+.|++++|. +..+|.. .++|+.|++++|.... .+ ....+|+
T Consensus 349 LS~N~-Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~-LP--------------~l~s~L~ 405 (788)
T PRK15387 349 VSDNQ-LASLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTS-LP--------------VLPSELK 405 (788)
T ss_pred cCCCc-cCCCCCC---Ccccceehhhccc-cccCccc---ccccceEEecCCcccC-CC--------------CcccCCC
Confidence 99874 4455542 3678889998875 4456653 3579999999875332 11 1124799
Q ss_pred eEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCc
Q 039007 244 KLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPE 308 (360)
Q Consensus 244 ~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 308 (360)
.|++++|. +..+|.. +.+|+.|++++| .++.+|..+..+++|+.|++++|++....+.
T Consensus 406 ~LdLS~N~-LssIP~l-----~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 406 ELMVSGNR-LTSLPML-----PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred EEEccCCc-CCCCCcc-----hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 99999987 4456643 357899999998 5778999999999999999999997765443
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=1.5e-17 Score=148.25 Aligned_cols=259 Identities=19% Similarity=0.083 Sum_probs=158.8
Q ss_pred EEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-----ccCcCCCCCCCcCeEeccccccc------cccchhhhc
Q 039007 40 TILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-----VLPREIGNLKHMRYLDLSRYCQI------KKLPNSICE 108 (360)
Q Consensus 40 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~------~~~~~~~~~ 108 (360)
.|+|.++.+. +......+..+..|++|+++++.++ .++..+...++|++++++++... ..++..+..
T Consensus 2 ~l~L~~~~l~--~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLK--TERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCccc--ccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 3555555543 3444566777788999999988874 34555667777888888776332 112234455
Q ss_pred CCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCch----hhhHhhhcCC-CCc
Q 039007 109 LQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL----EYLFEHIGQL-SGL 183 (360)
Q Consensus 109 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l-~~L 183 (360)
+++|+.|++++|......+..+..+.+ . ++|++|++++|... ..+...+..+ ++|
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L 139 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL 139 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCc
Confidence 667777777666444333333322222 1 33555555554332 2333445566 888
Q ss_pred cEEEeccCCCCc----ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCC----
Q 039007 184 RSLILVDCPSLI----SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLD---- 255 (360)
Q Consensus 184 ~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~---- 255 (360)
++|++++|.... .+...+..+++|++|++++|........ .........++|+.|++++|.....
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 212 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR-------ALAEGLKANCNLEVLDLNNNGLTDEGASA 212 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH-------HHHHHHHhCCCCCEEeccCCccChHHHHH
Confidence 999998886542 3444566778999999998864321100 0111123346899999999864422
Q ss_pred chhhhhcCCCCCCcEEecccCCCcc-ccccccc----Ccccccccccccccccc----CCCccccCCCccceecccCChh
Q 039007 256 LPQWLLQGSTKTLQFLGIEDCPNFM-ALQGSLK----DLEALETLLISACRKLS----SLPEDIHHLTTLKTLSIKECPA 326 (360)
Q Consensus 256 ~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~----~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~c~~ 326 (360)
+.... ..+++|++|++++|.... .+..... ..+.|++|++++|.+.. .+...+..+++|+++++++|+-
T Consensus 213 l~~~~--~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 213 LAETL--ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHh--cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 22233 577999999999986443 1211112 24799999999998652 2445566678999999999965
Q ss_pred HHh
Q 039007 327 LWE 329 (360)
Q Consensus 327 ~~~ 329 (360)
-..
T Consensus 291 ~~~ 293 (319)
T cd00116 291 GEE 293 (319)
T ss_pred cHH
Confidence 444
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=1.3e-15 Score=147.10 Aligned_cols=245 Identities=20% Similarity=0.240 Sum_probs=141.8
Q ss_pred cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEe
Q 039007 37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLI 116 (360)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 116 (360)
+..+|.++++.+...+..++ +.|+.|++++|.++.+|..+. .+|++|++++| .+..+|..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP------EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcCcCCcccc------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEE
Confidence 45566776665432222121 356777777777776665543 46777777766 4555665432 3677777
Q ss_pred eccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcc
Q 039007 117 LRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLIS 196 (360)
Q Consensus 117 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 196 (360)
+++|. +..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|. ++.+|..+. ++|+.|++++|.. ..
T Consensus 248 Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~L-t~ 318 (754)
T PRK15370 248 LSINR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSL-TA 318 (754)
T ss_pred CcCCc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCcc-cc
Confidence 77763 335665443 367777777776665554332 467777777763 334443321 3567777777633 34
Q ss_pred cCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccC
Q 039007 197 LPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDC 276 (360)
Q Consensus 197 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 276 (360)
+|..+ .++|+.|++.+|....... .-+++|+.|++++|. +..+|..+ .+.|++|+|++|
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~LP~--------------~l~~sL~~L~Ls~N~-L~~LP~~l----p~~L~~LdLs~N 377 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTSLPA--------------SLPPELQVLDVSKNQ-ITVLPETL----PPTITTLDVSRN 377 (754)
T ss_pred CCccc--cccceeccccCCccccCCh--------------hhcCcccEEECCCCC-CCcCChhh----cCCcCEEECCCC
Confidence 45433 3567777777764332110 112467777777775 33455433 357888888877
Q ss_pred CCcccccccccCccccccccccccccccCCCccc----cCCCccceecccCChh
Q 039007 277 PNFMALQGSLKDLEALETLLISACRKLSSLPEDI----HHLTTLKTLSIKECPA 326 (360)
Q Consensus 277 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~c~~ 326 (360)
.+..+|..+. +.|+.|++++|++. .+|..+ ..++.+..|++.+||-
T Consensus 378 -~Lt~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 378 -ALTNLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred -cCCCCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 4555665443 36778888887644 444433 3346777888877764
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=7.4e-17 Score=151.58 Aligned_cols=271 Identities=22% Similarity=0.271 Sum_probs=127.6
Q ss_pred cCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccc
Q 039007 34 DLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQ 113 (360)
Q Consensus 34 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 113 (360)
++-+|++|++++|.++ .+|..+..+.+|+.|.++.|.+.+.|....++.+|+++.+.++ ....+|.++..+.+|+
T Consensus 43 ~~v~L~~l~lsnn~~~----~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQIS----SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQ 117 (1081)
T ss_pred heeeeEEeeccccccc----cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhccc
Confidence 3333555555544432 2222234444455555555544444444444555555555432 4444454455555555
Q ss_pred eEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCC
Q 039007 114 TLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPS 193 (360)
Q Consensus 114 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 193 (360)
.|+++.| ....+|..+..+..+..+.+++|.. + ..++... ++.+++..+.....++..+..+++ .|++.+|..
T Consensus 118 ~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~--~-~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~ 190 (1081)
T KOG0618|consen 118 YLDLSFN-HFGPIPLVIEVLTAEEELAASNNEK--I-QRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEM 190 (1081)
T ss_pred ccccchh-ccCCCchhHHhhhHHHHHhhhcchh--h-hhhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchh
Confidence 5555543 3333444444444444444444411 0 1112222 455555555444455555555555 577777654
Q ss_pred CcccCcccCCCCCCCEEeecCCcCccccccc----cccCCC-C--CCCCCCCCCccceEEecCccCCCCchhhhhcCCCC
Q 039007 194 LISLPSAVKCLSSSETLILIDCKSLNLNLNI----EMEGEG-S--HHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTK 266 (360)
Q Consensus 194 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~-~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 266 (360)
. ...+..+++|+.+....+......... ...... . .........++++++++.+. +..+|.|. ..+.
T Consensus 191 ~---~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~-l~~lp~wi--~~~~ 264 (1081)
T KOG0618|consen 191 E---VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN-LSNLPEWI--GACA 264 (1081)
T ss_pred h---hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhh-hhcchHHH--Hhcc
Confidence 3 112334445554444433222111000 000000 0 00111122256666666654 44556666 6666
Q ss_pred CCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCC
Q 039007 267 TLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKEC 324 (360)
Q Consensus 267 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 324 (360)
+|+.+....| .+..+|......++|+.|.+.+|. +.-+|.....+..|+.|++..|
T Consensus 265 nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 265 NLEALNANHN-RLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cceEecccch-hHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc
Confidence 6777766665 345566656666666666666665 3345555555666666666655
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=3.7e-15 Score=143.86 Aligned_cols=248 Identities=18% Similarity=0.226 Sum_probs=169.6
Q ss_pred CCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcC
Q 039007 10 PKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMR 89 (360)
Q Consensus 10 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 89 (360)
..+...|.+.+..++. ++..+. ++|+.|++++|.+.. ++..+ ..+|+.|++++|.++.+|..+. ++|+
T Consensus 177 ~~~~~~L~L~~~~Lts--LP~~Ip--~~L~~L~Ls~N~Lts----LP~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~ 244 (754)
T PRK15370 177 KNNKTELRLKILGLTT--IPACIP--EQITTLILDNNELKS----LPENL--QGNIKTLYANSNQLTSIPATLP--DTIQ 244 (754)
T ss_pred ccCceEEEeCCCCcCc--CCcccc--cCCcEEEecCCCCCc----CChhh--ccCCCEEECCCCccccCChhhh--cccc
Confidence 3456778888777665 333332 478899999888642 22222 2478999999998888876553 4789
Q ss_pred eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007 90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN 169 (360)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (360)
.|++++| .+..+|..+. .+|+.|++++|. +..+|..+. ++|+.|++++|.+...|..+. ++|+.|++++|.
T Consensus 245 ~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~- 315 (754)
T PRK15370 245 EMELSIN-RITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS- 315 (754)
T ss_pred EEECcCC-ccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-
Confidence 9999987 4567776553 578999998764 446776553 478999999988877654432 478888888864
Q ss_pred hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecC
Q 039007 170 LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSG 249 (360)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 249 (360)
++.+|..+ .++|+.|++++|. +..+|..+ .++|+.|++++|..... + . ...++|+.|++++
T Consensus 316 Lt~LP~~l--~~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~L~~L-P-----------~--~lp~~L~~LdLs~ 376 (754)
T PRK15370 316 LTALPETL--PPGLKTLEAGENA-LTSLPASL--PPELQVLDVSKNQITVL-P-----------E--TLPPTITTLDVSR 376 (754)
T ss_pred cccCCccc--cccceeccccCCc-cccCChhh--cCcccEEECCCCCCCcC-C-----------h--hhcCCcCEEECCC
Confidence 34454433 3688999998884 44567655 37899999998753321 1 0 1124789999998
Q ss_pred ccCCCCchhhhhcCCCCCCcEEecccCCCccccccc----ccCccccccccccccccc
Q 039007 250 LKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGS----LKDLEALETLLISACRKL 303 (360)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~ 303 (360)
|. +..+|..+. ..|+.|++++|. +..+|.. ...++.+..|++.+|++.
T Consensus 377 N~-Lt~LP~~l~----~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 377 NA-LTNLPENLP----AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred Cc-CCCCCHhHH----HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 86 446666542 468899999884 5555543 344588889999998864
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=3.5e-17 Score=140.18 Aligned_cols=135 Identities=19% Similarity=0.189 Sum_probs=83.8
Q ss_pred cccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeC-CCCcccCcC-C
Q 039007 5 DCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDD-STIEVLPRE-I 82 (360)
Q Consensus 5 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~-~ 82 (360)
-+.++|+....|+|..|.++. ...++|+.+++||+|+|+.|.+ ...-++.|.+++.|..|-+.+ |+++.+|+. |
T Consensus 61 VP~~LP~~tveirLdqN~I~~-iP~~aF~~l~~LRrLdLS~N~I---s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQISS-IPPGAFKTLHRLRRLDLSKNNI---SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CcccCCCcceEEEeccCCccc-CChhhccchhhhceecccccch---hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 356677777777777777777 6677777777777777777776 344456677777666665554 566666653 5
Q ss_pred CCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCc-cccccccccEEEEecc
Q 039007 83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPK-DIRYLVSLRMFVVTTK 144 (360)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~ 144 (360)
..+..|+.|.+.-|...-.....+..+++|..|.+.+| ....++. .+..+..++.+.+..|
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcC
Confidence 66666666666655322223344556666666666664 4444443 3455555555555444
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=2.8e-17 Score=125.34 Aligned_cols=165 Identities=24% Similarity=0.366 Sum_probs=131.0
Q ss_pred hccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCc
Q 039007 32 LSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQS 111 (360)
Q Consensus 32 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 111 (360)
+-.+.++..|.+++|.+. .++..+..+.+|++|.+.+|+++++|..++.+++|+.|+++-| .+..+|.+|+.++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~----~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT----VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPA 103 (264)
T ss_pred ccchhhhhhhhcccCcee----ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCch
Confidence 445567778888888863 2233366778888999999988899988999999999998876 66778888999999
Q ss_pred cceEeeccccCc-CcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEecc
Q 039007 112 LQTLILRGCLKL-EELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVD 190 (360)
Q Consensus 112 L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 190 (360)
|+.|++.+|+.. ..+|..+-.+.-|+.|+++.|.+...|..++++++|+.|.+.+| .+-.+|..++.++.|++|.+.+
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhccc
Confidence 999999887655 36788888888889999999988888888999999999998886 4456788888899999999988
Q ss_pred CCCCcccCcccCC
Q 039007 191 CPSLISLPSAVKC 203 (360)
Q Consensus 191 ~~~~~~~~~~~~~ 203 (360)
| .++.+|+.++.
T Consensus 183 n-rl~vlppel~~ 194 (264)
T KOG0617|consen 183 N-RLTVLPPELAN 194 (264)
T ss_pred c-eeeecChhhhh
Confidence 7 44556655443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=4e-17 Score=124.54 Aligned_cols=177 Identities=21% Similarity=0.320 Sum_probs=148.0
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY 90 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 90 (360)
.++++|.+++|.+.. +++.++.+.+|++|++++|.+ ..+|..+..+++|+.|.+.-|.+..+|..|+.+|.|+.
T Consensus 33 s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqi----e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQI----EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchh----hhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 578899999998876 788999999999999999985 34566688999999999999999999999999999999
Q ss_pred Eecccccccc-ccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007 91 LDLSRYCQIK-KLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN 169 (360)
Q Consensus 91 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (360)
|++.+|...+ .+|..|..+..|+.|++++| -.+.+|..++++++|+.|.+..|..-..|..++.++.|++|++.+| .
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn-r 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN-R 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-e
Confidence 9999885444 47888989999999999997 5567899999999999999999999888999999999999999997 4
Q ss_pred hhhhHhhhcCCCCc---cEEEeccCCCCc
Q 039007 170 LEYLFEHIGQLSGL---RSLILVDCPSLI 195 (360)
Q Consensus 170 ~~~~~~~l~~l~~L---~~L~l~~~~~~~ 195 (360)
++.+|+.++.+.-+ +.+.+..|+...
T Consensus 185 l~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 185 LTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred eeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 56666666554322 234445554443
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.51 E-value=2e-14 Score=140.99 Aligned_cols=266 Identities=28% Similarity=0.364 Sum_probs=176.7
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCC-CcccCcCCCCCCCcC
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST-IEVLPREIGNLKHMR 89 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~ 89 (360)
..+|+.++.++.+.. ...-..++.|++|.+.+|.. ........+|..++.|++||+++|. +..+|..++.+-+||
T Consensus 523 ~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred hheeEEEEeccchhh---ccCCCCCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 578999999887765 33345666899999998862 1144555679999999999999876 669999999999999
Q ss_pred eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccccc---ccCCCCCCCcEeeccC
Q 039007 90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE---SGIACLSSLRSLIISH 166 (360)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~ 166 (360)
+|++++. .+..+|.++.++..|.+|++..+.....+|.....+.+|++|.+......... ..+.++..|+.+.+..
T Consensus 599 yL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 599 YLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9999975 78899999999999999999987777777777778999999999876533322 2334445555554433
Q ss_pred CCchhhhHhhhcCCCCcc----EEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCC-CCCc
Q 039007 167 CWNLEYLFEHIGQLSGLR----SLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDN-TRTH 241 (360)
Q Consensus 167 ~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 241 (360)
... .+...+..++.|. .+.+.++ .....+..+..+.+|+.|.+.+|.......... ...... .+++
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~------~~~~~~~~f~~ 748 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEELSILDCGISEIVIEWE------ESLIVLLCFPN 748 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceEEEEcCCCchhhcccc------cccchhhhHHH
Confidence 211 2222233444444 2332232 333445667788999999999988754322000 000011 2345
Q ss_pred cceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccc
Q 039007 242 LQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALE 293 (360)
Q Consensus 242 L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 293 (360)
+.++....|....+.. |. ...|+|+.|.+..|..++++......+..++
T Consensus 749 l~~~~~~~~~~~r~l~-~~--~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~ 797 (889)
T KOG4658|consen 749 LSKVSILNCHMLRDLT-WL--LFAPHLTSLSLVSCRLLEDIIPKLKALLELK 797 (889)
T ss_pred HHHHHhhccccccccc-hh--hccCcccEEEEecccccccCCCHHHHhhhcc
Confidence 6666666665554433 33 4568888888888877776554444444444
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.47 E-value=1.3e-15 Score=131.61 Aligned_cols=301 Identities=16% Similarity=0.161 Sum_probs=189.5
Q ss_pred cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCC-Cc--ccCcCCCCCCCcCeEeccccccccccc-h-hhhcCCc
Q 039007 37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST-IE--VLPREIGNLKHMRYLDLSRYCQIKKLP-N-SICELQS 111 (360)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~-~-~~~~l~~ 111 (360)
.|+.|.+.|+. ......+.....+|++++.|.+.+|. ++ ..-..-..|++|++|++..|..++... . ....+++
T Consensus 139 ~lk~LSlrG~r-~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCR-AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccc-cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 56777777665 34444555556667777777666665 33 222223456777777777665554432 2 2235777
Q ss_pred cceEeeccccCcCc--CCccccccccccEEEEeccccccc---cccCCCCCCCcEeeccCCCchh--hhHhhhcCCCCcc
Q 039007 112 LQTLILRGCLKLEE--LPKDIRYLVSLRMFVVTTKQKSLQ---ESGIACLSSLRSLIISHCWNLE--YLFEHIGQLSGLR 184 (360)
Q Consensus 112 L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~ 184 (360)
|+++++++|..+.. +......++.++.+...++.-... ...-.++..+-.+++..|..++ .+...-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 77777777654432 222234455555554444432211 1222344555566666665544 3344455678888
Q ss_pred EEEeccCCCCccc--CcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhc
Q 039007 185 SLILVDCPSLISL--PSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQ 262 (360)
Q Consensus 185 ~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 262 (360)
.|..++|...+.. .+...++++|+.+-+..|+..+... .......+++|+.+++.++....+-...-.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~---------ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG---------FTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh---------hhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 8888888765533 2345678888888888888765444 3445567778888888888766555333334
Q ss_pred CCCCCCcEEecccCCCcccc-----cccccCccccccccccccccccC-CCccccCCCccceecccCChhHHhhcCCCCC
Q 039007 263 GSTKTLQFLGIEDCPNFMAL-----QGSLKDLEALETLLISACRKLSS-LPEDIHHLTTLKTLSIKECPALWERCKPLTG 336 (360)
Q Consensus 263 ~~~~~L~~L~L~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~ 336 (360)
.+++.|+.+.+++|..+++- .....+...|..+++++|+.+++ ..+.+..+++|+.+++.+|..+++.....
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~-- 446 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR-- 446 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH--
Confidence 68999999999999877643 33345678899999999997764 45667789999999999998777553332
Q ss_pred CCCccccccceeeeccc
Q 039007 337 EDWSKIARIPRIMLDDE 353 (360)
Q Consensus 337 ~~~~~~~~l~~~~~~~~ 353 (360)
...|+|+++++..
T Consensus 447 ----~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 447 ----FATHLPNIKVHAY 459 (483)
T ss_pred ----HHhhCccceehhh
Confidence 2456777777553
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=9.3e-15 Score=125.46 Aligned_cols=273 Identities=19% Similarity=0.131 Sum_probs=172.0
Q ss_pred cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEeccccccccccch-hhhcCCccce
Q 039007 37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKLPN-SICELQSLQT 114 (360)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~ 114 (360)
.-..+.|..|.+ ...++.+|..+++|+.|+++.|.++.+ |..|+.++.|..|-+.++..++.+|. .|.++..|+.
T Consensus 68 ~tveirLdqN~I---~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQNQI---SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred cceEEEeccCCc---ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 456677777776 556677788888888888888888844 66788888877777766557777774 4667888888
Q ss_pred EeeccccCcCcCC-ccccccccccEEEEeccccccccc-cCCCCCCCcEeeccCCCchh-----hhH-------hhhcCC
Q 039007 115 LILRGCLKLEELP-KDIRYLVSLRMFVVTTKQKSLQES-GIACLSSLRSLIISHCWNLE-----YLF-------EHIGQL 180 (360)
Q Consensus 115 L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-----~~~-------~~l~~l 180 (360)
|.+..|. +..++ +.+..++++..|.+..|.+..+.. .+..+..++.+.+..|..+- +.. -..+..
T Consensus 145 LllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 145 LLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 8887653 33333 456778888888888887776643 67777777777776654211 110 011111
Q ss_pred CCccEEEeccCCCCcccCc--ccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchh
Q 039007 181 SGLRSLILVDCPSLISLPS--AVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQ 258 (360)
Q Consensus 181 ~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 258 (360)
.-.....+.+.+. ..+.+ +.+....+.+--.+.|... +.. ....+..+++|++|+|++|+....-..
T Consensus 224 rc~~p~rl~~~Ri-~q~~a~kf~c~~esl~s~~~~~d~~d---------~~c-P~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 224 RCVSPYRLYYKRI-NQEDARKFLCSLESLPSRLSSEDFPD---------SIC-PAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred eecchHHHHHHHh-cccchhhhhhhHHhHHHhhccccCcC---------CcC-hHHHHhhcccceEeccCCCccchhhhh
Confidence 1111111111110 01110 0111001100001111111 111 111256677999999999986655556
Q ss_pred hhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChh
Q 039007 259 WLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPA 326 (360)
Q Consensus 259 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 326 (360)
++ .....+++|.|..|..-..-...|.++..|+.|++.+|++....|..|..+..|..|++-+||-
T Consensus 293 aF--e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 293 AF--EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hh--cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 66 7889999999999843333344689999999999999999888888899999999999988764
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.34 E-value=4.1e-14 Score=122.41 Aligned_cols=285 Identities=19% Similarity=0.204 Sum_probs=199.9
Q ss_pred EEEEeccCCCCcccchHHHhhcCC-CccEEEEeCCCCc---ccCcCCCCCCCcCeEeccccccccccc-hhh-hcCCccc
Q 039007 40 TILFSINDENTSESFFTSCISKSQ-FLRVLDLDDSTIE---VLPREIGNLKHMRYLDLSRYCQIKKLP-NSI-CELQSLQ 113 (360)
Q Consensus 40 ~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~-~~l~~L~ 113 (360)
++++..-.....+..+...+..|- .|+.|.++++.-. .+-.....+|+++.|.+.+|..+++.. ..+ ..|++|+
T Consensus 114 ~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~ 193 (483)
T KOG4341|consen 114 HIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLR 193 (483)
T ss_pred eeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhh
Confidence 344443322233444445555553 6889999988633 333345789999999999998776532 223 3689999
Q ss_pred eEeeccccCcCcC--CccccccccccEEEEeccccc---cccccCCCCCCCcEeeccCCCchh--hhHhhhcCCCCccEE
Q 039007 114 TLILRGCLKLEEL--PKDIRYLVSLRMFVVTTKQKS---LQESGIACLSSLRSLIISHCWNLE--YLFEHIGQLSGLRSL 186 (360)
Q Consensus 114 ~L~l~~~~~~~~~--p~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L 186 (360)
.+++..|..++.. ......+++|++++++.+.-- .+.....++..++.+...+|...+ .+...-+.+.-+.++
T Consensus 194 ~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~l 273 (483)
T KOG4341|consen 194 HLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKL 273 (483)
T ss_pred hhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhcc
Confidence 9999987655432 123467899999999887432 222345667778888777776544 344444566777788
Q ss_pred EeccCCCCcc--cCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCC
Q 039007 187 ILVDCPSLIS--LPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGS 264 (360)
Q Consensus 187 ~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 264 (360)
++..|..+++ +...-..+..|+.++.++|....... .......+++|+.+.+.+|+.+++.....++.+
T Consensus 274 nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~---------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn 344 (483)
T KOG4341|consen 274 NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV---------LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN 344 (483)
T ss_pred chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH---------HHHHhcCCCceEEEeccccchhhhhhhhhhhcC
Confidence 8777755543 23334568899999999998765443 344566778999999999999998888877789
Q ss_pred CCCCcEEecccCCCcc--cccccccCccccccccccccccccCC-----CccccCCCccceecccCChhHHhhcCC
Q 039007 265 TKTLQFLGIEDCPNFM--ALQGSLKDLEALETLLISACRKLSSL-----PEDIHHLTTLKTLSIKECPALWERCKP 333 (360)
Q Consensus 265 ~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~c~~~~~~~~~ 333 (360)
++.|+.+++..|.... .+.+.-.+|+.|+.+.+++|..+++- ...-.+...|+.+.+++||.+++...+
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 9999999999997666 34455578999999999999877753 222334578999999999999977433
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.30 E-value=8.1e-13 Score=112.05 Aligned_cols=244 Identities=20% Similarity=0.179 Sum_probs=144.7
Q ss_pred chhhhhccCccccEEEEeccCCC-CcccchHHHhhcCCCccEEEEeCCC---Cc-ccCcC-------CCCCCCcCeEecc
Q 039007 27 DFSSLLSDLRRVRTILFSINDEN-TSESFFTSCISKSQFLRVLDLDDST---IE-VLPRE-------IGNLKHMRYLDLS 94 (360)
Q Consensus 27 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~---~~-~~~~~-------~~~l~~L~~L~l~ 94 (360)
.+.+.......+..|++++|.++ .....+...+.+.+.|++.++++-- .. .+|+. +..+++|++|+++
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 56667788889999999999886 3334566778888888888888642 11 44443 4567899999999
Q ss_pred ccccccccch----hhhcCCccceEeeccccCcCcCC-------------ccccccccccEEEEecccccccc-----cc
Q 039007 95 RYCQIKKLPN----SICELQSLQTLILRGCLKLEELP-------------KDIRYLVSLRMFVVTTKQKSLQE-----SG 152 (360)
Q Consensus 95 ~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~p-------------~~~~~l~~L~~L~l~~~~~~~~~-----~~ 152 (360)
+|......+. -+.++..|++|.+.+|.+...-- ..++.-++|+.+.+.+|++...+ ..
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 8855544433 34568899999998874332110 11233456777777766665432 33
Q ss_pred CCCCCCCcEeeccCCCc----hhhhHhhhcCCCCccEEEeccCCCCc----ccCcccCCCCCCCEEeecCCcCccccccc
Q 039007 153 IACLSSLRSLIISHCWN----LEYLFEHIGQLSGLRSLILVDCPSLI----SLPSAVKCLSSSETLILIDCKSLNLNLNI 224 (360)
Q Consensus 153 ~~~l~~L~~L~l~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 224 (360)
+...+.|+.+.+..|.. .+.+...+..|++|++|++..|.+.. .+...++.+++|+.|.+++|..-..
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~---- 256 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE---- 256 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc----
Confidence 45556666666665532 22344555666666666666664322 2233344555666666655532110
Q ss_pred cccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcc----cccccccCcccccccccccc
Q 039007 225 EMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFM----ALQGSLKDLEALETLLISAC 300 (360)
Q Consensus 225 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~ 300 (360)
....+...+. ...|+|+.|.+.+|.... .+.......|.|+.|+|++|
T Consensus 257 ---------------------------Ga~a~~~al~-~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 257 ---------------------------GAIAFVDALK-ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ---------------------------cHHHHHHHHh-ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 1112222221 356777777777775443 22233455677777777777
Q ss_pred cc
Q 039007 301 RK 302 (360)
Q Consensus 301 ~~ 302 (360)
..
T Consensus 309 ~l 310 (382)
T KOG1909|consen 309 RL 310 (382)
T ss_pred cc
Confidence 75
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.30 E-value=1.7e-12 Score=127.66 Aligned_cols=269 Identities=26% Similarity=0.253 Sum_probs=171.8
Q ss_pred CcceEEEeeecc--ccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCc
Q 039007 11 KRVRHLSFVSAS--ASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHM 88 (360)
Q Consensus 11 ~~l~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L 88 (360)
+.+++|-+..+. +.. .....|..++.|++|++++|.- ...+|..+..+-+|++|+++++.+..+|..++++..|
T Consensus 545 ~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~---l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSS---LSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred CccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCc---cCcCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence 478899998886 433 4455699999999999999764 6678889999999999999999999999999999999
Q ss_pred CeEeccccccccccchhhhcCCccceEeeccccCc--CcCCccccccccccEEEEeccccccccccCCCCCCCc----Ee
Q 039007 89 RYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKL--EELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLR----SL 162 (360)
Q Consensus 89 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~----~L 162 (360)
.+|++........+|.....+.+||+|.+..-... ...-..+..+..|+.+....... .+...+..++.|. .+
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhh
Confidence 99999987666666665667999999999763211 11112334445555555433322 1112223333333 23
Q ss_pred eccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcc-----cCC-CCCCCEEeecCCcCccccccccccCCCCCCCCC
Q 039007 163 IISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSA-----VKC-LSSSETLILIDCKSLNLNLNIEMEGEGSHHDRD 236 (360)
Q Consensus 163 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 236 (360)
.+.+ ......+..+..+.+|+.|.+..|...+..... ... ++++..+...+|.......+ .
T Consensus 700 ~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~------------~ 766 (889)
T KOG4658|consen 700 SIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW------------L 766 (889)
T ss_pred hhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch------------h
Confidence 3222 233344566778899999999998765432222 111 44555555666655443321 2
Q ss_pred CCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCccc-ccccccCccccccccccc
Q 039007 237 NTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMA-LQGSLKDLEALETLLISA 299 (360)
Q Consensus 237 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~ 299 (360)
...++|+.|++..|....++.+.. ..+..++++.+..+..-.- .....++++++..+.+.+
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i~~~--k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~ 828 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDIIPKL--KALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF 828 (889)
T ss_pred hccCcccEEEEecccccccCCCHH--HHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence 455789999999998887776665 5555566544444322111 122344444444444443
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.7e-12 Score=107.86 Aligned_cols=180 Identities=16% Similarity=0.178 Sum_probs=136.8
Q ss_pred ccccEEEEeccccccc--cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccC--cccCCCCCCCE
Q 039007 134 VSLRMFVVTTKQKSLQ--ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLP--SAVKCLSSSET 209 (360)
Q Consensus 134 ~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~ 209 (360)
..|++++++...++.. ...+..|.+|+.|.+.++...+.+...++.-.+|+.|+++.|...+... -.+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3688999988766532 3467789999999999988878888888889999999999998776543 34678999999
Q ss_pred EeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccC---CCCchhhhhcCCCCCCcEEecccCCCcc-ccccc
Q 039007 210 LILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQ---LLDLPQWLLQGSTKTLQFLGIEDCPNFM-ALQGS 285 (360)
Q Consensus 210 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~---~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~ 285 (360)
|.+++|....... ........++|+.|+|+|+.. ..++.... ..||+|..|+|++|..+. +....
T Consensus 265 LNlsWc~l~~~~V---------tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~--~rcp~l~~LDLSD~v~l~~~~~~~ 333 (419)
T KOG2120|consen 265 LNLSWCFLFTEKV---------TVAVAHISETLTQLNLSGYRRNLQKSHLSTLV--RRCPNLVHLDLSDSVMLKNDCFQE 333 (419)
T ss_pred cCchHhhccchhh---------hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH--HhCCceeeeccccccccCchHHHH
Confidence 9999987655433 112223335899999998742 23343333 789999999999998887 66667
Q ss_pred ccCcccccccccccccccc-CCCccccCCCccceecccCC
Q 039007 286 LKDLEALETLLISACRKLS-SLPEDIHHLTTLKTLSIKEC 324 (360)
Q Consensus 286 ~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~c 324 (360)
+.+++.|++|.++.|..+. ..-..+.+.|+|.+|++.+|
T Consensus 334 ~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 8899999999999998654 12233667899999999998
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.1e-10 Score=101.95 Aligned_cols=181 Identities=15% Similarity=0.062 Sum_probs=105.5
Q ss_pred cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC--CCCCCCcC
Q 039007 12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE--IGNLKHMR 89 (360)
Q Consensus 12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~l~~L~ 89 (360)
.++.+++.+++++........+.|++++.|+|++|-+. ....+......+++|+.|.++.|.+.....+ -..+++|+
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 45666666666555222246677777888888877652 2333555677777888888877775522111 12456777
Q ss_pred eEeccccccccc-cchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccccc--ccCCCCCCCcEeeccC
Q 039007 90 YLDLSRYCQIKK-LPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE--SGIACLSSLRSLIISH 166 (360)
Q Consensus 90 ~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~ 166 (360)
.|.++.|..... +......+|+|+.|++.+|............+..|+.|++++|.+-..+ ..++.++.|+.|.++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 777777754432 2233345777777777776422211122334566777777777665543 4566677777777776
Q ss_pred CCchh-hhHhh-----hcCCCCccEEEeccCCC
Q 039007 167 CWNLE-YLFEH-----IGQLSGLRSLILVDCPS 193 (360)
Q Consensus 167 ~~~~~-~~~~~-----l~~l~~L~~L~l~~~~~ 193 (360)
|...+ ..|.. ....++|+.|++..|+.
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 53322 12221 23456777777777654
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=6.5e-11 Score=100.66 Aligned_cols=238 Identities=17% Similarity=0.130 Sum_probs=132.6
Q ss_pred hHHHhhcCCCccEEEEeCCCCc-----ccCcCCCCCCCcCeEeccccccc----cccchh-------hhcCCccceEeec
Q 039007 55 FTSCISKSQFLRVLDLDDSTIE-----VLPREIGNLKHMRYLDLSRYCQI----KKLPNS-------ICELQSLQTLILR 118 (360)
Q Consensus 55 ~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~-------~~~l~~L~~L~l~ 118 (360)
+......+..+.++++++|.+. .+.+.+.+-++|+..++++- .. .++|.. +..+++|+.++|+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 4445666777888888888765 23445566667777777753 22 233332 2245677777777
Q ss_pred cccCcCcCCcc----ccccccccEEEEecccccccc--------------ccCCCCCCCcEeeccCCCc----hhhhHhh
Q 039007 119 GCLKLEELPKD----IRYLVSLRMFVVTTKQKSLQE--------------SGIACLSSLRSLIISHCWN----LEYLFEH 176 (360)
Q Consensus 119 ~~~~~~~~p~~----~~~l~~L~~L~l~~~~~~~~~--------------~~~~~l~~L~~L~l~~~~~----~~~~~~~ 176 (360)
+|-+....++. +..+..|++|++.+|.+.... ......+.|+.+.+..|.. -+.+...
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 76444333322 345566666666666543221 1122334444444444321 1133333
Q ss_pred hcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCc
Q 039007 177 IGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDL 256 (360)
Q Consensus 177 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 256 (360)
++..+.|+.+.+..|. ...... -.....+.++++|+.|+|.+|.....-
T Consensus 181 ~~~~~~leevr~~qN~------------------------I~~eG~-------~al~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNG------------------------IRPEGV-------TALAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred HHhccccceEEEeccc------------------------ccCchh-------HHHHHHHHhCCcceeeecccchhhhHH
Confidence 4444444444444443 221111 001223445555666666665444322
Q ss_pred ----hhhhhcCCCCCCcEEecccCCCcc----cccccc-cCccccccccccccccccC----CCccccCCCccceecccC
Q 039007 257 ----PQWLLQGSTKTLQFLGIEDCPNFM----ALQGSL-KDLEALETLLISACRKLSS----LPEDIHHLTTLKTLSIKE 323 (360)
Q Consensus 257 ----~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~-~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~ 323 (360)
...+ ..++.|+.|++.+|..-+ .+...+ ...|+|+.|++.+|.+..+ +...+...|.|+.|+|++
T Consensus 230 s~~LakaL--~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 230 SVALAKAL--SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHHHh--cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 2233 567889999999995544 222222 3479999999999997653 334455689999999999
Q ss_pred Chh
Q 039007 324 CPA 326 (360)
Q Consensus 324 c~~ 326 (360)
|..
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 964
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=5.2e-10 Score=88.89 Aligned_cols=108 Identities=23% Similarity=0.325 Sum_probs=29.0
Q ss_pred hccCccccEEEEeccCCCCcccchHHHhh-cCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhh-hcC
Q 039007 32 LSDLRRVRTILFSINDENTSESFFTSCIS-KSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSI-CEL 109 (360)
Q Consensus 32 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l 109 (360)
+.++.++++|++.+|.+.. +.. +. .+.+|+.|++++|.++.+. .+..+++|++|++++| .++.++..+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~----Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST----IEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNL 87 (175)
T ss_dssp -------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-
T ss_pred ccccccccccccccccccc----ccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhC
Confidence 4445566777777776531 111 22 3556777777777766553 4556677777777766 444444333 346
Q ss_pred CccceEeeccccCcCcCC--ccccccccccEEEEeccccc
Q 039007 110 QSLQTLILRGCLKLEELP--KDIRYLVSLRMFVVTTKQKS 147 (360)
Q Consensus 110 ~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~ 147 (360)
++|++|++++|.+. .+- ..+..+++|+.|++.+|.+.
T Consensus 88 p~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 88 PNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCccc
Confidence 77777777665332 221 23445556666666555443
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.3e-11 Score=98.70 Aligned_cols=203 Identities=17% Similarity=0.182 Sum_probs=122.0
Q ss_pred CcceEEEeeeccccccchhhhhccC-ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcCCCCCCCc
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDL-RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPREIGNLKHM 88 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L 88 (360)
+.|..+++-..-+.+..+.+.+.-+ .+|+.|++++..+. ...+...+.+|.+|+.|.+.++.+. .+...+.+-.+|
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it--~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L 236 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVIT--VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNL 236 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhhee--HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccc
Confidence 3344555544333332244444444 36888888877654 5567788888888998888888877 455566777888
Q ss_pred CeEeccccccccccc--hhhhcCCccceEeeccccCcCcCC-ccccc-cccccEEEEeccccccc----cccCCCCCCCc
Q 039007 89 RYLDLSRYCQIKKLP--NSICELQSLQTLILRGCLKLEELP-KDIRY-LVSLRMFVVTTKQKSLQ----ESGIACLSSLR 160 (360)
Q Consensus 89 ~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~-l~~L~~L~l~~~~~~~~----~~~~~~l~~L~ 160 (360)
+.|+++.|..+++.. -.+.+|+.|++|+++.|...+... ..+.. -.+|..|+++++..... .--...+++|.
T Consensus 237 ~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~ 316 (419)
T KOG2120|consen 237 VRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV 316 (419)
T ss_pred eeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence 888888887666543 235678888888888886544321 11222 24667777777654322 11234567777
Q ss_pred EeeccCCCchh-hhHhhhcCCCCccEEEeccCCCCc-ccCcccCCCCCCCEEeecCC
Q 039007 161 SLIISHCWNLE-YLFEHIGQLSGLRSLILVDCPSLI-SLPSAVKCLSSSETLILIDC 215 (360)
Q Consensus 161 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 215 (360)
+||+++|..++ .....+.+++.|+.|.++.|-.+. ...-.+...|.|.+|++.+|
T Consensus 317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 77777665444 344455566666666666664322 11112344556666655554
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.9e-11 Score=103.28 Aligned_cols=133 Identities=20% Similarity=0.171 Sum_probs=60.1
Q ss_pred CCCCcCeEeccccccccccch--hhhcCCccceEeeccccCcCc---CCccccccccccEEEEeccccccccc--cCCCC
Q 039007 84 NLKHMRYLDLSRYCQIKKLPN--SICELQSLQTLILRGCLKLEE---LPKDIRYLVSLRMFVVTTKQKSLQES--GIACL 156 (360)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l 156 (360)
++.+|+...+.++ .+...+. -...|++++.|+++.| +... +...+..+++|+.|+++.|.+....+ ....+
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 4555555555543 3333331 2334566666666654 2221 12234455666666666555443311 11234
Q ss_pred CCCcEeeccCCCchh-hhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCc
Q 039007 157 SSLRSLIISHCWNLE-YLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSL 218 (360)
Q Consensus 157 ~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 218 (360)
+.|+.|.+..|.... .+-..+..+|+|+.|++.+|............+..|+.|++++++.+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 555555555553322 22233344556666666555322211112223345555555555544
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=5.5e-10 Score=88.74 Aligned_cols=128 Identities=27% Similarity=0.324 Sum_probs=48.6
Q ss_pred hhcCCCccEEEEeCCCCcccCcCCC-CCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccc-cccccc
Q 039007 59 ISKSQFLRVLDLDDSTIEVLPREIG-NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDI-RYLVSL 136 (360)
Q Consensus 59 ~~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L 136 (360)
+.++.++++|++.++.++.+. .+. .+.+|+.|++++| .+..+.. +..++.|+.|++++| .+..+...+ ..+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNN-RISSISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCC-CCccccC-ccChhhhhhcccCCC-CCCccccchHHhCCcC
Confidence 445567888889888888663 444 5788888999887 5555543 777888899988886 444565444 357888
Q ss_pred cEEEEeccccccc--cccCCCCCCCcEeeccCCCchh---hhHhhhcCCCCccEEEecc
Q 039007 137 RMFVVTTKQKSLQ--ESGIACLSSLRSLIISHCWNLE---YLFEHIGQLSGLRSLILVD 190 (360)
Q Consensus 137 ~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~ 190 (360)
++|++++|.+... ...+..+++|+.|++.+|.... +-...+..+|+|+.||-..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 9999888887654 2456678888888888875432 3344566788888887544
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=2.7e-11 Score=109.13 Aligned_cols=170 Identities=27% Similarity=0.316 Sum_probs=88.3
Q ss_pred cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEe
Q 039007 37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLI 116 (360)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 116 (360)
.-...+++.|.+. .++..+..|..|+.+.++.|.+..+|..+.++..|.+|+++.| .+..+|..+..|+ |+.|-
T Consensus 76 dt~~aDlsrNR~~----elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 76 DTVFADLSRNRFS----ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred chhhhhccccccc----cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEE
Confidence 3344555555532 2233344455555555555555555555555555556665554 4445555444443 55555
Q ss_pred eccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcc
Q 039007 117 LRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLIS 196 (360)
Q Consensus 117 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 196 (360)
+++| ..+.+|..++....|.+|+.+.|.+...+..++++.+|+.|.+..| ....+|+.+. .-.|..||++.| .+..
T Consensus 150 ~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~-~LpLi~lDfScN-kis~ 225 (722)
T KOG0532|consen 150 VSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELC-SLPLIRLDFSCN-KISY 225 (722)
T ss_pred EecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHh-CCceeeeecccC-ceee
Confidence 5543 4445555555555555555555555555555555555555555553 3344444444 334455555444 3444
Q ss_pred cCcccCCCCCCCEEeecCCc
Q 039007 197 LPSAVKCLSSSETLILIDCK 216 (360)
Q Consensus 197 ~~~~~~~~~~L~~L~l~~~~ 216 (360)
+|..+.+|..|++|-+.+++
T Consensus 226 iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred cchhhhhhhhheeeeeccCC
Confidence 55555555555555555544
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.86 E-value=7.4e-11 Score=106.37 Aligned_cols=167 Identities=22% Similarity=0.293 Sum_probs=109.7
Q ss_pred EEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccc
Q 039007 16 LSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSR 95 (360)
Q Consensus 16 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 95 (360)
.++..|.+.. ++..+..|..|..+.+..|.+ ..++..+.++..|.+|+++.|++..+|..+..|+ |+.|-+++
T Consensus 80 aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~----r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 80 ADLSRNRFSE--LPEEACAFVSLESLILYHNCI----RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhcccccccc--CchHHHHHHHHHHHHHHhccc----eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 3444444433 444556666677777776663 2445556667777777777777777777776666 77777765
Q ss_pred cccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHh
Q 039007 96 YCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFE 175 (360)
Q Consensus 96 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 175 (360)
| +++.+|..++....|..|+.+.| .+..+|..++.+.+|+.|.+..|++...|..+..++ |..||++.| .+..+|-
T Consensus 153 N-kl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScN-kis~iPv 228 (722)
T KOG0532|consen 153 N-KLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCN-KISYLPV 228 (722)
T ss_pred C-ccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccC-ceeecch
Confidence 4 66677766776677777777765 455666667777777777777777777666666443 677777754 5566677
Q ss_pred hhcCCCCccEEEeccCCC
Q 039007 176 HIGQLSGLRSLILVDCPS 193 (360)
Q Consensus 176 ~l~~l~~L~~L~l~~~~~ 193 (360)
.+..|++|++|-|.+|+.
T Consensus 229 ~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhhhhheeeeeccCCC
Confidence 777777777777777643
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.85 E-value=2.9e-09 Score=97.75 Aligned_cols=200 Identities=29% Similarity=0.321 Sum_probs=141.8
Q ss_pred EEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCC-CcCeEeccccccccccchhhhcCCccceEeec
Q 039007 40 TILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLK-HMRYLDLSRYCQIKKLPNSICELQSLQTLILR 118 (360)
Q Consensus 40 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 118 (360)
.+.+..+... ... ......+.++.|++.++.++.++.....+. +|+.|+++++ .+..+|..+..+++|+.|+++
T Consensus 97 ~l~~~~~~~~---~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLR---SNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccc---cCc-hhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccC
Confidence 5666666541 111 224455778888888888888887777774 8999999876 666776667888999999998
Q ss_pred cccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccC
Q 039007 119 GCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLP 198 (360)
Q Consensus 119 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 198 (360)
.| .+..+|...+..++|+.|++++|.+..++........|+++.+..|. ....+..++.+.++..+.+..++. ..++
T Consensus 172 ~N-~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~-~~~~ 248 (394)
T COG4886 172 FN-DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKL-EDLP 248 (394)
T ss_pred Cc-hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCcee-eecc
Confidence 86 45566666668888889999999888887666666778888888864 333445566777787777766633 3336
Q ss_pred cccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhh
Q 039007 199 SAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWL 260 (360)
Q Consensus 199 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 260 (360)
..++.++.+++|++.++...... ......+++.|+++++......+...
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~-------------~~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSIS-------------SLGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred chhccccccceeccccccccccc-------------cccccCccCEEeccCccccccchhhh
Confidence 67778888999988887654322 25566788888988887665554433
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.84 E-value=2.1e-09 Score=98.64 Aligned_cols=181 Identities=30% Similarity=0.367 Sum_probs=134.6
Q ss_pred hhhccCccccEEEEeccCCCCcccchHHHhhcCC-CccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhc
Q 039007 30 SLLSDLRRVRTILFSINDENTSESFFTSCISKSQ-FLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICE 108 (360)
Q Consensus 30 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 108 (360)
..+...+.+..|.+.++.+. .++....... +|++|+++.+.+..+|..+..+++|+.|++++| .+..+|...+.
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~ 184 (394)
T COG4886 110 SELLELTNLTSLDLDNNNIT----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSN 184 (394)
T ss_pred hhhhcccceeEEecCCcccc----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhh
Confidence 34555678889999988753 2233344443 789999999998888777888999999999987 67777776668
Q ss_pred CCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEe
Q 039007 109 LQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLIL 188 (360)
Q Consensus 109 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 188 (360)
.++|+.|++++| .+..+|..+.....|+.+.+++|.....+..+..+.++..+.+..+. ...++..++.++.++.|++
T Consensus 185 ~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 185 LSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDL 262 (394)
T ss_pred hhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccchhccccccceecc
Confidence 889999999986 56677776667777899999888655555677788888888866653 3333566778888999999
Q ss_pred ccCCCCcccCcccCCCCCCCEEeecCCcCcc
Q 039007 189 VDCPSLISLPSAVKCLSSSETLILIDCKSLN 219 (360)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 219 (360)
++|.. ..++. ++...+++.++++++....
T Consensus 263 s~n~i-~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 263 SNNQI-SSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccc-ccccc-ccccCccCEEeccCccccc
Confidence 88743 34444 7778889999998876544
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=5.9e-09 Score=87.30 Aligned_cols=229 Identities=15% Similarity=0.079 Sum_probs=130.5
Q ss_pred chHHHhhcCCCccEEEEeCCC--Cc-------ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcC
Q 039007 54 FFTSCISKSQFLRVLDLDDST--IE-------VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE 124 (360)
Q Consensus 54 ~~~~~~~~l~~L~~L~l~~~~--~~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 124 (360)
.+...+.-|..|.+|.++... +. .+|-.+.-+.+|+.+.++.|. ...+......=|.|+.+.+... -+.
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s-~~~ 250 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNT-TIQ 250 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeecc-ccc
Confidence 344556667777777777653 21 233344556778888888762 2222221223356777777653 232
Q ss_pred cCCccccccccccEEEEec-ccccc-ccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccC
Q 039007 125 ELPKDIRYLVSLRMFVVTT-KQKSL-QESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVK 202 (360)
Q Consensus 125 ~~p~~~~~l~~L~~L~l~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 202 (360)
..|. +--...+....... ....+ ......-+..|+++++++| .++.+.+.+.-.|+++.|+++.|+.... ..+.
T Consensus 251 ~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa 326 (490)
T KOG1259|consen 251 DVPS-LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTV--QNLA 326 (490)
T ss_pred cccc-ccchhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeee--hhhh
Confidence 2221 11111111111100 00111 1123334567788888886 4555666666778888888888754332 2366
Q ss_pred CCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcc-c
Q 039007 203 CLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFM-A 281 (360)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~ 281 (360)
.+++|+.|+++++......++. ..+.++++|.|++|. +.++.. + +.+-+|.+|++++|+.-. +
T Consensus 327 ~L~~L~~LDLS~N~Ls~~~Gwh------------~KLGNIKtL~La~N~-iE~LSG-L--~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 327 ELPQLQLLDLSGNLLAECVGWH------------LKLGNIKTLKLAQNK-IETLSG-L--RKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred hcccceEeecccchhHhhhhhH------------hhhcCEeeeehhhhh-Hhhhhh-h--HhhhhheeccccccchhhHH
Confidence 6788888888887654433321 344578888888875 323322 2 456778999999884322 3
Q ss_pred ccccccCcccccccccccccccc
Q 039007 282 LQGSLKDLEALETLLISACRKLS 304 (360)
Q Consensus 282 ~~~~~~~l~~L~~L~l~~~~~~~ 304 (360)
-...++++|.|+++.+.+|++..
T Consensus 391 eV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 391 EVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred HhcccccccHHHHHhhcCCCccc
Confidence 34457889999999999988543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=2.5e-09 Score=89.50 Aligned_cols=128 Identities=20% Similarity=0.143 Sum_probs=74.0
Q ss_pred CCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeecc
Q 039007 86 KHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIIS 165 (360)
Q Consensus 86 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 165 (360)
..|.++++++| .+..+.+++.-.|.++.|+++.|.+. .+ ..+..+++|++|++++|.......+-..+-+++.|.+.
T Consensus 284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhcccccc-chhhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 44667777766 45555565666677777777765333 22 23566677777777777666554444455566667666
Q ss_pred CCCchhhhHhhhcCCCCccEEEeccCCCCc-ccCcccCCCCCCCEEeecCCcCc
Q 039007 166 HCWNLEYLFEHIGQLSGLRSLILVDCPSLI-SLPSAVKCLSSSETLILIDCKSL 218 (360)
Q Consensus 166 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 218 (360)
.|. ++.+ ..++++=.|..|++++|..-. +-...++++|.|+.+.+.+++..
T Consensus 361 ~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 652 2222 234455566666776664321 11234566777777777766543
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.65 E-value=5.8e-08 Score=93.74 Aligned_cols=104 Identities=22% Similarity=0.300 Sum_probs=76.3
Q ss_pred ccEEEEeCCCCc-ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEec
Q 039007 65 LRVLDLDDSTIE-VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTT 143 (360)
Q Consensus 65 L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 143 (360)
+..|+++++.+. .+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 667788887776 6777788888888888887766567777778888888888888777777887788888888888888
Q ss_pred ccccc-ccccCCC-CCCCcEeeccCCC
Q 039007 144 KQKSL-QESGIAC-LSSLRSLIISHCW 168 (360)
Q Consensus 144 ~~~~~-~~~~~~~-l~~L~~L~l~~~~ 168 (360)
|.+.. .|..+.. ..++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 77653 3444443 2355667777664
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.61 E-value=9.2e-08 Score=92.35 Aligned_cols=107 Identities=22% Similarity=0.307 Sum_probs=89.2
Q ss_pred cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007 37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL 115 (360)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 115 (360)
.++.|+|+++.+ ...++..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|..++++++|+.|
T Consensus 419 ~v~~L~L~~n~L---~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGL---RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCc---cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 478889998886 5566677889999999999999987 788889999999999999987777889889999999999
Q ss_pred eeccccCcCcCCcccccc-ccccEEEEecccc
Q 039007 116 ILRGCLKLEELPKDIRYL-VSLRMFVVTTKQK 146 (360)
Q Consensus 116 ~l~~~~~~~~~p~~~~~l-~~L~~L~l~~~~~ 146 (360)
++++|.+.+.+|..++.. .++..+++.+|..
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 999988888899877653 4667788777753
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.47 E-value=1.1e-07 Score=61.99 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=42.3
Q ss_pred CCCcEEecccCCCccccc-ccccCccccccccccccccccCCCccccCCCccceecccCCh
Q 039007 266 KTLQFLGIEDCPNFMALQ-GSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP 325 (360)
Q Consensus 266 ~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 325 (360)
|+|++|++++| .++.+| ..|.++++|++|++++|.+..--+..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56778888877 555554 467778888888888777654445667778888888887774
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.9e-07 Score=60.05 Aligned_cols=58 Identities=28% Similarity=0.422 Sum_probs=41.1
Q ss_pred ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCeEecccc
Q 039007 36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRY 96 (360)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~ 96 (360)
|+|++|++++|.+ ....+..|.++++|++|++++|.+..++ ..|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l---~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKL---TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTE---SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCC---CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4677777777766 3444456777788888888877777554 45777888888888776
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=1.5e-07 Score=86.87 Aligned_cols=126 Identities=26% Similarity=0.333 Sum_probs=69.9
Q ss_pred cCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccc
Q 039007 34 DLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQ 113 (360)
Q Consensus 34 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 113 (360)
.+..+..+.+..|.+.. ....+..+++|..|++.+|.+..+...+..+++|++|++++| .++.+.. +..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK----ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh----hhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchh
Confidence 45555555555555421 122255566666666766666655444566666677776665 4444433 45556666
Q ss_pred eEeeccccCcCcCCccccccccccEEEEecccccccccc-CCCCCCCcEeeccCC
Q 039007 114 TLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESG-IACLSSLRSLIISHC 167 (360)
Q Consensus 114 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 167 (360)
.|++.+|. +..+ ..+..++.|+.+++++|.+...... ...+.+++.+++.+|
T Consensus 144 ~L~l~~N~-i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 144 ELNLSGNL-ISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred hheeccCc-chhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 66666653 3233 2344466666666666666555221 355566666666655
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.28 E-value=3.6e-07 Score=75.73 Aligned_cols=243 Identities=16% Similarity=0.064 Sum_probs=136.5
Q ss_pred hhhccCccccEEEEeccCCC-CcccchHHHhhcCCCccEEEEeCCCCc----cc-------CcCCCCCCCcCeEeccccc
Q 039007 30 SLLSDLRRVRTILFSINDEN-TSESFFTSCISKSQFLRVLDLDDSTIE----VL-------PREIGNLKHMRYLDLSRYC 97 (360)
Q Consensus 30 ~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~-------~~~~~~l~~L~~L~l~~~~ 97 (360)
..+.-+..+..+++++|.++ ....++...+.+-.+|++..+++--.. .+ .+.+-+||+|+..+++.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34555778889999999875 223345566666677888777764211 22 2345678889999888886
Q ss_pred cccccch----hhhcCCccceEeeccccCcCcCCc--------------cccccccccEEEEeccccccccc-----cCC
Q 039007 98 QIKKLPN----SICELQSLQTLILRGCLKLEELPK--------------DIRYLVSLRMFVVTTKQKSLQES-----GIA 154 (360)
Q Consensus 98 ~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~p~--------------~~~~l~~L~~L~l~~~~~~~~~~-----~~~ 154 (360)
+..+.|+ .++.-+.|++|.+++|. .+.+.. .+..-+.|+...+..|++...+. .+.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence 6555553 34567888888888763 322211 12233567777777776654421 222
Q ss_pred CCCCCcEeeccCCCchhh-----hHhhhcCCCCccEEEeccCCCCc----ccCcccCCCCCCCEEeecCCcCcccccccc
Q 039007 155 CLSSLRSLIISHCWNLEY-----LFEHIGQLSGLRSLILVDCPSLI----SLPSAVKCLSSSETLILIDCKSLNLNLNIE 225 (360)
Q Consensus 155 ~l~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 225 (360)
.-.+|+.+.+..|..-.. ....+..+.+|+.|++..|.+.. .+...++.++.|+.|.+.+|-...
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~------ 256 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN------ 256 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc------
Confidence 234666666666532211 12334456777777777664322 122334455556666666552111
Q ss_pred ccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccc------ccc-ccCcccccccccc
Q 039007 226 MEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL------QGS-LKDLEALETLLIS 298 (360)
Q Consensus 226 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~------~~~-~~~l~~L~~L~l~ 298 (360)
.....+...+.....|+|..|....|..-..+ +.. -..+|-|..|.+.
T Consensus 257 -------------------------~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~n 311 (388)
T COG5238 257 -------------------------EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERN 311 (388)
T ss_pred -------------------------ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHc
Confidence 11112222222235677777777766443321 111 1457788888888
Q ss_pred cccccc
Q 039007 299 ACRKLS 304 (360)
Q Consensus 299 ~~~~~~ 304 (360)
+|++..
T Consensus 312 gNr~~E 317 (388)
T COG5238 312 GNRIKE 317 (388)
T ss_pred cCcchh
Confidence 887543
No 47
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.23 E-value=2.5e-07 Score=87.35 Aligned_cols=228 Identities=24% Similarity=0.274 Sum_probs=109.4
Q ss_pred CCCCcCeEeccccccccc--cchhhhcCCccceEeeccc-cCcCcCC----ccccccccccEEEEeccc-cccc--cccC
Q 039007 84 NLKHMRYLDLSRYCQIKK--LPNSICELQSLQTLILRGC-LKLEELP----KDIRYLVSLRMFVVTTKQ-KSLQ--ESGI 153 (360)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~p----~~~~~l~~L~~L~l~~~~-~~~~--~~~~ 153 (360)
.++.|+.|.+..|..+.. +......+++|+.|+++++ ......+ .....+++|+.++++++. ++.. ....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356677777666655544 2233456677777777652 1111111 122344666666666655 2221 1112
Q ss_pred CCCCCCcEeeccCCCchh--hhHhhhcCCCCccEEEeccCCCCcc--cCcccCCCCCCCEEeecCCcCccccccccccCC
Q 039007 154 ACLSSLRSLIISHCWNLE--YLFEHIGQLSGLRSLILVDCPSLIS--LPSAVKCLSSSETLILIDCKSLNLNLNIEMEGE 229 (360)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 229 (360)
..|++|+.|.+..|..++ .+......++.|++|++++|...+. +......|++++.+.+..+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------------ 333 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------------ 333 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC------------
Confidence 236667777666555322 3344445566677777776655421 233334455555544433321
Q ss_pred CCCCCCCCCCCccceEEecCccCCC-CchhhhhcCCCCCCcEEecccCCCcccc--cccccCccc--------------c
Q 039007 230 GSHHDRDNTRTHLQKLFVSGLKQLL-DLPQWLLQGSTKTLQFLGIEDCPNFMAL--QGSLKDLEA--------------L 292 (360)
Q Consensus 230 ~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~l~~--------------L 292 (360)
+..++.+.+.++.... +.........+++++.+.+..|. .... ...+.+|+. +
T Consensus 334 ---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l 403 (482)
T KOG1947|consen 334 ---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSL 403 (482)
T ss_pred ---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCcc
Confidence 2233333333322221 11111112445555555555544 2211 123334443 5
Q ss_pred ccccccccccccCCC-cccc-CCCccceecccCChhHHhhcCC
Q 039007 293 ETLLISACRKLSSLP-EDIH-HLTTLKTLSIKECPALWERCKP 333 (360)
Q Consensus 293 ~~L~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~c~~~~~~~~~ 333 (360)
+.|++..|...+.-. .... .+..++.+.+.+|+.+......
T Consensus 404 ~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 404 RVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred ceEecccCccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence 677777766554311 1111 1667788888888777765443
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=1.3e-07 Score=87.26 Aligned_cols=129 Identities=26% Similarity=0.277 Sum_probs=96.5
Q ss_pred hcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEE
Q 039007 60 SKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMF 139 (360)
Q Consensus 60 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 139 (360)
..+..++.+.++.+.+..+-..+..+.+|..|++.++ .+..+...+..+++|++|++++| .+..+. .+..++.|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheecccc-cccccc-chhhccchhhh
Confidence 4566677777888877765555788899999999977 55555554778999999999987 454442 56777889999
Q ss_pred EEeccccccccccCCCCCCCcEeeccCCCchhhhHhh-hcCCCCccEEEeccCCC
Q 039007 140 VVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEH-IGQLSGLRSLILVDCPS 193 (360)
Q Consensus 140 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~ 193 (360)
++.+|.+..+ ..+..+++|+.+++.+|.... +... +..+.+++.+.+.+|..
T Consensus 146 ~l~~N~i~~~-~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 146 NLSGNLISDI-SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSI 198 (414)
T ss_pred eeccCcchhc-cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCch
Confidence 9999988877 456668899999999875433 2221 46788899999988754
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.23 E-value=7.6e-07 Score=86.10 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=36.4
Q ss_pred cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc--ccCcCCCCCCCcCeEeccccccccccchhhhcCCccce
Q 039007 37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE--VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQT 114 (360)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 114 (360)
+|+.|+++|.. ....+|+.+.-..+|.|+.|.+++-.+. +......++|+|..||++++ .++.+ .+++++++||.
T Consensus 123 nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccc-hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 45555555443 1234444444444555555555544432 22223344455555555543 33333 33455555555
Q ss_pred Eeecc
Q 039007 115 LILRG 119 (360)
Q Consensus 115 L~l~~ 119 (360)
|.+.+
T Consensus 200 L~mrn 204 (699)
T KOG3665|consen 200 LSMRN 204 (699)
T ss_pred HhccC
Confidence 55543
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=1.6e-06 Score=72.94 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=49.3
Q ss_pred HHhhcCCCccEEEEeCCCCc---ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcC-cCCccccc
Q 039007 57 SCISKSQFLRVLDLDDSTIE---VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE-ELPKDIRY 132 (360)
Q Consensus 57 ~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~ 132 (360)
..-..++.++++++.+|.++ ++...+.++|+|++|+++.|+....+...-....+|+.|-+.+..... .....+..
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 33445667777777777765 344445677777777777654332221111244567777776643322 12233456
Q ss_pred cccccEEEEecc
Q 039007 133 LVSLRMFVVTTK 144 (360)
Q Consensus 133 l~~L~~L~l~~~ 144 (360)
+++++.|+++.|
T Consensus 145 lP~vtelHmS~N 156 (418)
T KOG2982|consen 145 LPKVTELHMSDN 156 (418)
T ss_pred chhhhhhhhccc
Confidence 667777777666
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=1.2e-07 Score=88.59 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=13.7
Q ss_pred hhhccCccccEEEEeccCCC
Q 039007 30 SLLSDLRRVRTILFSINDEN 49 (360)
Q Consensus 30 ~~~~~~~~L~~L~l~~~~~~ 49 (360)
-.+..++.||+|.+.++++.
T Consensus 103 i~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred ceeccccceeeEEecCcchh
Confidence 34556777888888777753
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=2.4e-05 Score=70.17 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=16.8
Q ss_pred CCCcEEecccCCCcccccccccCcccccccccccc
Q 039007 266 KTLQFLGIEDCPNFMALQGSLKDLEALETLLISAC 300 (360)
Q Consensus 266 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 300 (360)
++|++|++.+|..+. +|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 566677776665332 232222 35666666554
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.04 E-value=3.8e-06 Score=81.38 Aligned_cols=132 Identities=19% Similarity=0.253 Sum_probs=91.6
Q ss_pred CcceEEEeeeccccccchh-hhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcC
Q 039007 11 KRVRHLSFVSASASRNDFS-SLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMR 89 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 89 (360)
.+++.|++.+...-...+. ..-.-+|.|++|.+++-.+. .+.+...+.++++|..||+++++++.+ ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec--chhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 3467777776543332333 33447899999999987654 444677788999999999999999877 6788999999
Q ss_pred eEecccccccccc--chhhhcCCccceEeeccccCcCcCCccc-------cccccccEEEEeccccc
Q 039007 90 YLDLSRYCQIKKL--PNSICELQSLQTLILRGCLKLEELPKDI-------RYLVSLRMFVVTTKQKS 147 (360)
Q Consensus 90 ~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~p~~~-------~~l~~L~~L~l~~~~~~ 147 (360)
.|.+.+= ..... -..+.++++|+.||++...... .+..+ ..+|+|+.|+++++...
T Consensus 199 ~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 199 VLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhccCC-CCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 9988743 33221 2346789999999998753332 22111 24678888888877654
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.02 E-value=8.6e-07 Score=83.63 Aligned_cols=43 Identities=26% Similarity=0.412 Sum_probs=28.4
Q ss_pred CCCCCCcEEecccCCCccc-ccccccC-ccccccccccccccccC
Q 039007 263 GSTKTLQFLGIEDCPNFMA-LQGSLKD-LEALETLLISACRKLSS 305 (360)
Q Consensus 263 ~~~~~L~~L~L~~~~~~~~-~~~~~~~-l~~L~~L~l~~~~~~~~ 305 (360)
..+..++.|.+..|...+. ....... +..++.+++.+++....
T Consensus 398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred ccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 3344489999999876662 2222222 77889999999886653
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.02 E-value=3.8e-05 Score=68.97 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=26.6
Q ss_pred CCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCC
Q 039007 62 SQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP 127 (360)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p 127 (360)
|.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+ .++|+.|.+++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 4445555555554444441 11235555555444444444322 2345555555443333333
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=1.4e-06 Score=73.17 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=44.0
Q ss_pred cCCccceEeeccccCcC--cCCccccccccccEEEEeccccccccccC-CCCCCCcEeeccCCCc-hhhhHhhhcCCCCc
Q 039007 108 ELQSLQTLILRGCLKLE--ELPKDIRYLVSLRMFVVTTKQKSLQESGI-ACLSSLRSLIISHCWN-LEYLFEHIGQLSGL 183 (360)
Q Consensus 108 ~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L 183 (360)
.++.++++++.+|.+.. .+...+.++|.|+.|+++.|........+ ....+|+.|-+.+... .+..-..+..+|++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46677777777764332 23334556677777777776665543333 2445666665554321 11222233445555
Q ss_pred cEEEeccC
Q 039007 184 RSLILVDC 191 (360)
Q Consensus 184 ~~L~l~~~ 191 (360)
++|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55555554
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.95 E-value=1.4e-07 Score=88.06 Aligned_cols=44 Identities=23% Similarity=0.109 Sum_probs=21.8
Q ss_pred hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007 170 LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC 215 (360)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 215 (360)
+..+-..+.-++.++.|+++.|..... +.+..|+.|++|++++|
T Consensus 176 L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYN 219 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccc
Confidence 333444455555666666666543221 13444555555555554
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.3e-05 Score=47.92 Aligned_cols=33 Identities=39% Similarity=0.558 Sum_probs=18.2
Q ss_pred CccEEEEeCCCCcccCcCCCCCCCcCeEecccc
Q 039007 64 FLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRY 96 (360)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 96 (360)
+|++|++++|.++.+|+.+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455666666665555555556666666666655
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=4e-05 Score=45.86 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCCcEEecccCCCcccccccccCcccccccccccccc
Q 039007 266 KTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRK 302 (360)
Q Consensus 266 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 302 (360)
++|++|++++| .++++|..++++++|+.|++++|++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCC
Confidence 35666777666 4555665566677777777777653
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.59 E-value=0.00013 Score=60.96 Aligned_cols=204 Identities=16% Similarity=0.170 Sum_probs=133.9
Q ss_pred CcceEEEeeecccccc---chhhhhccCccccEEEEeccCCCCccc-------chHHHhhcCCCccEEEEeCCCCc-ccC
Q 039007 11 KRVRHLSFVSASASRN---DFSSLLSDLRRVRTILFSINDENTSES-------FFTSCISKSQFLRVLDLDDSTIE-VLP 79 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~~~l~~L~~L~l~~~~~~-~~~ 79 (360)
..++.+++++|.+... -+...++.-++|++.+++.--.+...+ .+.+.+-+||+|+..++++|-+. ..|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4577889999988762 233445566888888888543221111 24456778999999999999876 444
Q ss_pred c----CCCCCCCcCeEeccccccccccc-hhhh-------------cCCccceEeeccccCcCcCCc-----cccccccc
Q 039007 80 R----EIGNLKHMRYLDLSRYCQIKKLP-NSIC-------------ELQSLQTLILRGCLKLEELPK-----DIRYLVSL 136 (360)
Q Consensus 80 ~----~~~~l~~L~~L~l~~~~~~~~~~-~~~~-------------~l~~L~~L~l~~~~~~~~~p~-----~~~~l~~L 136 (360)
+ .+++-..|..|.+++|. .+.+. ..++ .-|.|+....++|. ....+. .+..-..|
T Consensus 110 e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~l 187 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHENL 187 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcCc
Confidence 4 35677889999999874 33221 1122 35889999998874 333332 12233578
Q ss_pred cEEEEeccccccc------cccCCCCCCCcEeeccCCCchh----hhHhhhcCCCCccEEEeccCCCCcc----cCcccC
Q 039007 137 RMFVVTTKQKSLQ------ESGIACLSSLRSLIISHCWNLE----YLFEHIGQLSGLRSLILVDCPSLIS----LPSAVK 202 (360)
Q Consensus 137 ~~L~l~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~ 202 (360)
+.+.+..|.+..- ...+..+.+|+.|++.+|.... .+...+...+.|++|.+..|-.... +...+.
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 8899998877532 2456788999999999986543 4556667788899999988853321 111111
Q ss_pred --CCCCCCEEeecCCc
Q 039007 203 --CLSSSETLILIDCK 216 (360)
Q Consensus 203 --~~~~L~~L~l~~~~ 216 (360)
..|+|+.|...++.
T Consensus 268 e~~~p~l~~L~~~Yne 283 (388)
T COG5238 268 EKFVPNLMPLPGDYNE 283 (388)
T ss_pred hhcCCCccccccchhh
Confidence 24777888777654
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=1.8e-05 Score=66.09 Aligned_cols=100 Identities=25% Similarity=0.237 Sum_probs=72.5
Q ss_pred cCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccch--hhhcCCc
Q 039007 34 DLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPN--SICELQS 111 (360)
Q Consensus 34 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~ 111 (360)
.+.+++.|+++|+.+. +. .....++.|++|.|+-|.++++ ..+..|.+|++|.+..| .+..+.+ -+.++++
T Consensus 17 dl~~vkKLNcwg~~L~---DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD---DI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPS 89 (388)
T ss_pred HHHHhhhhcccCCCcc---HH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCch
Confidence 3457788999988862 21 3477889999999999988876 45788999999999877 4444432 3568899
Q ss_pred cceEeeccccCcCcCCc-----cccccccccEEE
Q 039007 112 LQTLILRGCLKLEELPK-----DIRYLVSLRMFV 140 (360)
Q Consensus 112 L~~L~l~~~~~~~~~p~-----~~~~l~~L~~L~ 140 (360)
|+.|.|..|...+.-+. .+..+++|+.|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999988876665543 245667777665
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.26 E-value=3.3e-05 Score=57.64 Aligned_cols=109 Identities=18% Similarity=0.207 Sum_probs=59.1
Q ss_pred ccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCC-CCCCcCeEeccccccccccchhhhcCCccceEe
Q 039007 38 VRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIG-NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLI 116 (360)
Q Consensus 38 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 116 (360)
+..++++.|.+.. .......+....+|...++++|.+...|+.+. +++.++.|++.+| .+.++|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 4455555554310 11122234444555555666666666665543 3456666666654 5566666666666666666
Q ss_pred eccccCcCcCCccccccccccEEEEeccccccc
Q 039007 117 LRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ 149 (360)
Q Consensus 117 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~ 149 (360)
++.|.+. ..|+.+..+.++..|+..++....+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccccC
Confidence 6665333 3455555566666666655555444
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=2.1e-05 Score=65.78 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=76.1
Q ss_pred cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC--cCCCCCCCcC
Q 039007 12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP--REIGNLKHMR 89 (360)
Q Consensus 12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~ 89 (360)
.++.|++-++++.+ .....+++.|.+|.|+-|.++ ++ ..+..|+.|++|+|+.|.+..+- ..+.++|+|+
T Consensus 20 ~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIs----sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKIS----SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HhhhhcccCCCccH---HHHHHhcccceeEEeeccccc----cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 46677777888877 556789999999999999863 22 33889999999999999988542 4578999999
Q ss_pred eEeccccccccccchh-----hhcCCccceEe
Q 039007 90 YLDLSRYCQIKKLPNS-----ICELQSLQTLI 116 (360)
Q Consensus 90 ~L~l~~~~~~~~~~~~-----~~~l~~L~~L~ 116 (360)
.|++..|.-.+..+.. +.-+++|+.|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999988766655543 34588898886
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.00057 Score=54.65 Aligned_cols=102 Identities=22% Similarity=0.250 Sum_probs=63.5
Q ss_pred CccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhh-hcCCccceEeeccccCcCcCC--ccccccccccEEE
Q 039007 64 FLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSI-CELQSLQTLILRGCLKLEELP--KDIRYLVSLRMFV 140 (360)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~ 140 (360)
....+++++|.+..+ ..+..++.|.+|.+++| .+..+.+.+ ..+++|+.|.+.+|++. .+- .-+..+++|+.|.
T Consensus 43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc-ccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 345677888776655 35667788888888876 444443334 34677888888876433 221 2355677777777
Q ss_pred Eecccccccc----ccCCCCCCCcEeeccCCC
Q 039007 141 VTTKQKSLQE----SGIACLSSLRSLIISHCW 168 (360)
Q Consensus 141 l~~~~~~~~~----~~~~~l~~L~~L~l~~~~ 168 (360)
+-+|....-. ..+..+++|+.||+....
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 7777654431 345556777777766543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.00011 Score=61.11 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=24.7
Q ss_pred CCCccEEEEeCCCCcccCcCCCCCCCcCeEecccc--ccccccchhhhcCCccceEeeccc
Q 039007 62 SQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRY--CQIKKLPNSICELQSLQTLILRGC 120 (360)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~ 120 (360)
+..|+.|++.+..++++ ..+..+++|++|.++.| .....++.-..++++|+++.+++|
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 33344444444443332 13334455555555544 222233332334455555555554
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.14 E-value=0.00065 Score=54.34 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=68.4
Q ss_pred cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCC-CCCCcCeEeccccccccccc--hhhhcCCccc
Q 039007 37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIG-NLKHMRYLDLSRYCQIKKLP--NSICELQSLQ 113 (360)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~ 113 (360)
....++++.|++... ..|.+++.|..|.+..|.++.+.+.+. .+++|+.|.+.+| .+.++. .-+..|++|+
T Consensus 43 ~~d~iDLtdNdl~~l-----~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-----DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccceecccccchhhc-----ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccc
Confidence 455678888775322 236777888888888888886655554 4577888888877 333332 2256788888
Q ss_pred eEeeccccCcCcC---CccccccccccEEEEeccc
Q 039007 114 TLILRGCLKLEEL---PKDIRYLVSLRMFVVTTKQ 145 (360)
Q Consensus 114 ~L~l~~~~~~~~~---p~~~~~l~~L~~L~l~~~~ 145 (360)
.|.+-+|.....- -..+..+++|+.|++..-.
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 8888887544321 1246778888888887543
No 67
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.91 E-value=0.00015 Score=54.19 Aligned_cols=109 Identities=22% Similarity=0.193 Sum_probs=79.2
Q ss_pred EEEeeeccccc-cchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEec
Q 039007 15 HLSFVSASASR-NDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDL 93 (360)
Q Consensus 15 ~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 93 (360)
.++|+++++-. .+....+.+..+|...++++|.+ .+..++....++.+..|++.+|.+..+|..+..++.|+.|++
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f---k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF---KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchh---hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34555554431 12344566777888999999987 555566666677889999999999999999999999999999
Q ss_pred cccccccccchhhhcCCccceEeeccccCcCcCCc
Q 039007 94 SRYCQIKKLPNSICELQSLQTLILRGCLKLEELPK 128 (360)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~ 128 (360)
+.|. +...|.-+..+.+|-.|+..++ ....+|.
T Consensus 108 ~~N~-l~~~p~vi~~L~~l~~Lds~~n-a~~eid~ 140 (177)
T KOG4579|consen 108 RFNP-LNAEPRVIAPLIKLDMLDSPEN-ARAEIDV 140 (177)
T ss_pred ccCc-cccchHHHHHHHhHHHhcCCCC-ccccCcH
Confidence 9884 4455665667888888888775 4444553
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.84 E-value=0.00029 Score=58.57 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=54.5
Q ss_pred CCCCcCeEeccccccccccchhhhcCCccceEeeccc--cCcCcCCccccccccccEEEEeccccccc--cccCCCCCCC
Q 039007 84 NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGC--LKLEELPKDIRYLVSLRMFVVTTKQKSLQ--ESGIACLSSL 159 (360)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L 159 (360)
.+..|+.|++.++ ..+.+. ++-.+++|+.|.++.| .....++.-+..+++|+++++++|.+..+ ...+..+.+|
T Consensus 41 ~~~~le~ls~~n~-gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhcc-ceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3445555555543 222221 2445667777777766 33344444445557777777777766543 1234445556
Q ss_pred cEeeccCCCchh---hhHhhhcCCCCccEEEecc
Q 039007 160 RSLIISHCWNLE---YLFEHIGQLSGLRSLILVD 190 (360)
Q Consensus 160 ~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~ 190 (360)
..|++..|.... .--..+.-+++|+.|+-..
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 666666653322 2223344456666665443
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.55 E-value=0.0072 Score=45.69 Aligned_cols=81 Identities=11% Similarity=0.249 Sum_probs=30.2
Q ss_pred hhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccc-hhhhc
Q 039007 31 LLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICE 108 (360)
Q Consensus 31 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~ 108 (360)
.|.+|.+|+.+.+.. .+ ...-...|.+++.|+.+.+..+ +..++. .+..++.|+.+.+.. ....++ ..+..
T Consensus 7 ~F~~~~~l~~i~~~~-~~---~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~ 79 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TI---KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSN 79 (129)
T ss_dssp TTTT-TT--EEEETS-T-----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT
T ss_pred HHhCCCCCCEEEECC-Ce---eEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccc
Confidence 455555555555542 11 2222333555555555555543 333322 344454555555542 122222 22334
Q ss_pred CCccceEeec
Q 039007 109 LQSLQTLILR 118 (360)
Q Consensus 109 l~~L~~L~l~ 118 (360)
+++|+.+.+.
T Consensus 80 ~~~l~~i~~~ 89 (129)
T PF13306_consen 80 CTNLKNIDIP 89 (129)
T ss_dssp -TTECEEEET
T ss_pred cccccccccC
Confidence 5555555553
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.21 E-value=0.024 Score=42.80 Aligned_cols=102 Identities=12% Similarity=0.268 Sum_probs=44.0
Q ss_pred HhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCC-ccccccc
Q 039007 58 CISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELP-KDIRYLV 134 (360)
Q Consensus 58 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~ 134 (360)
.|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+... +..++ ..+..+.+|+.+.+.. ....++ ..+..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccc
Confidence 466677777777764 3444433 3666667777777642 44433 3455666677777754 122222 2344566
Q ss_pred cccEEEEeccccccccccCCCCCCCcEeecc
Q 039007 135 SLRMFVVTTKQKSLQESGIACLSSLRSLIIS 165 (360)
Q Consensus 135 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 165 (360)
+|+.+.+..+-.......+.++ +|+.+.+.
T Consensus 82 ~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPSNITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETTT-BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCccccEEchhhhcCC-CceEEEEC
Confidence 6666666543221222344444 56655554
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.0032 Score=50.51 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=38.6
Q ss_pred CCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCccc-ccccccCccccccccccccc
Q 039007 238 TRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMA-LQGSLKDLEALETLLISACR 301 (360)
Q Consensus 238 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~ 301 (360)
.+..++.|++.+|..+.++....+.+-.++|+.|+|++|..+++ -...+..+++|+.|.+.+-+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 34455566666666666665555545667777777777776662 23345666667777666544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.38 E-value=0.0074 Score=29.90 Aligned_cols=18 Identities=28% Similarity=0.576 Sum_probs=8.5
Q ss_pred ccEEEEeCCCCcccCcCC
Q 039007 65 LRVLDLDDSTIEVLPREI 82 (360)
Q Consensus 65 L~~L~l~~~~~~~~~~~~ 82 (360)
|++|++++|.++.+|+.+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 445555555444444443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=0.0058 Score=49.04 Aligned_cols=87 Identities=16% Similarity=0.259 Sum_probs=60.8
Q ss_pred ccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCccccc-ccc-cCccccccccccccccccC-CCccccCCCccc
Q 039007 241 HLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQ-GSL-KDLEALETLLISACRKLSS-LPEDIHHLTTLK 317 (360)
Q Consensus 241 ~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~ 317 (360)
.++.++-+++....+--..+ ..++.++.|.+.+|..+.++. ..+ .-.++|+.|+|++|+.+++ .-..+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L--~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL--RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHH--hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 34555555544333333444 688999999999998887442 112 3468999999999998875 334467789999
Q ss_pred eecccCChhHHh
Q 039007 318 TLSIKECPALWE 329 (360)
Q Consensus 318 ~L~l~~c~~~~~ 329 (360)
.|.+.+-|.+..
T Consensus 180 ~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 180 RLHLYDLPYVAN 191 (221)
T ss_pred HHHhcCchhhhc
Confidence 999988876553
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.54 E-value=0.056 Score=24.78 Aligned_cols=12 Identities=42% Similarity=0.764 Sum_probs=4.1
Q ss_pred ccEEEEeCCCCc
Q 039007 65 LRVLDLDDSTIE 76 (360)
Q Consensus 65 L~~L~l~~~~~~ 76 (360)
|+.|++++|.++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.65 E-value=0.09 Score=27.15 Aligned_cols=18 Identities=17% Similarity=0.482 Sum_probs=14.2
Q ss_pred CCccceecccCChhHHhh
Q 039007 313 LTTLKTLSIKECPALWER 330 (360)
Q Consensus 313 ~~~L~~L~l~~c~~~~~~ 330 (360)
+++|++|+|++|+.+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 578888888888877765
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.86 E-value=0.0036 Score=58.43 Aligned_cols=62 Identities=23% Similarity=0.132 Sum_probs=35.0
Q ss_pred CCCcEEecccCCCcc----cccccccCccccccccccccccccCCCc----cc-cCCCccceecccCChhHH
Q 039007 266 KTLQFLGIEDCPNFM----ALQGSLKDLEALETLLISACRKLSSLPE----DI-HHLTTLKTLSIKECPALW 328 (360)
Q Consensus 266 ~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~-~~~~~L~~L~l~~c~~~~ 328 (360)
+.+..+++..+.... .++..+...+.++.++++.|....+.+. .. .+. .++.++++.++-..
T Consensus 376 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~ 446 (478)
T KOG4308|consen 376 SELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITA 446 (478)
T ss_pred cccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhh
Confidence 345556665553332 3444556677888888887765443221 11 233 77778877775433
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.98 E-value=0.0038 Score=58.29 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=17.4
Q ss_pred ceEEEeeecccccc---chhhhhccCccccEEEEeccCCC
Q 039007 13 VRHLSFVSASASRN---DFSSLLSDLRRVRTILFSINDEN 49 (360)
Q Consensus 13 l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~ 49 (360)
+..+++.++.+... .....+...++|..|++++|.++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 34444444444332 12334445555555555555543
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.11 E-value=0.046 Score=45.11 Aligned_cols=92 Identities=21% Similarity=0.150 Sum_probs=58.7
Q ss_pred CCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcE
Q 039007 82 IGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRS 161 (360)
Q Consensus 82 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 161 (360)
+......+.||++.+ ....+...++.++.|..|+++.+ .+..+|..++....+++++...|..+..|..++..+.+++
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 444556667777665 34444555666777777777764 4556677777777777777766666666667777777777
Q ss_pred eeccCCCchhhhHh
Q 039007 162 LIISHCWNLEYLFE 175 (360)
Q Consensus 162 L~l~~~~~~~~~~~ 175 (360)
++.-++.....+..
T Consensus 116 ~e~k~~~~~~~~~~ 129 (326)
T KOG0473|consen 116 NEQKKTEFFRKLFG 129 (326)
T ss_pred hhhccCcchHHHHh
Confidence 77766654444433
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.76 E-value=0.012 Score=48.46 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=57.7
Q ss_pred hhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcC
Q 039007 30 SLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICEL 109 (360)
Q Consensus 30 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 109 (360)
..+..+.+..+|+++.|... .+..-|.-++.|..|+++.+.+..+|..++....+..++...| ..+..|.++...
T Consensus 36 ~ei~~~kr~tvld~~s~r~v----n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~ 110 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV----NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKE 110 (326)
T ss_pred hhhhccceeeeehhhhhHHH----hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcccccc
Confidence 34556677777777776632 2233345555666777777777777777777777777777654 556677777777
Q ss_pred CccceEeecccc
Q 039007 110 QSLQTLILRGCL 121 (360)
Q Consensus 110 ~~L~~L~l~~~~ 121 (360)
++++.+++.++.
T Consensus 111 ~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 111 PHPKKNEQKKTE 122 (326)
T ss_pred CCcchhhhccCc
Confidence 777777777654
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.37 E-value=0.57 Score=23.98 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=9.3
Q ss_pred CCccEEEEeCCCCcccCc
Q 039007 63 QFLRVLDLDDSTIEVLPR 80 (360)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~ 80 (360)
++|+.|++.+|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555543
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.37 E-value=0.57 Score=23.98 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=9.3
Q ss_pred CCccEEEEeCCCCcccCc
Q 039007 63 QFLRVLDLDDSTIEVLPR 80 (360)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~ 80 (360)
++|+.|++.+|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555543
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.07 E-value=0.89 Score=22.70 Aligned_cols=11 Identities=36% Similarity=0.477 Sum_probs=4.5
Q ss_pred CCcCeEecccc
Q 039007 86 KHMRYLDLSRY 96 (360)
Q Consensus 86 ~~L~~L~l~~~ 96 (360)
++|++|++++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 34555555544
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.76 E-value=2.8 Score=21.61 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=10.3
Q ss_pred CccEEEEeCCCCcccCc
Q 039007 64 FLRVLDLDDSTIEVLPR 80 (360)
Q Consensus 64 ~L~~L~l~~~~~~~~~~ 80 (360)
+|++|++++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666554
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.48 E-value=2.6 Score=39.54 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=32.4
Q ss_pred CCCCCccceEEecCccCC--CCchhhhhcCCCCCCcEEecccCCCcc----cccccccCcccccccccccccccc
Q 039007 236 DNTRTHLQKLFVSGLKQL--LDLPQWLLQGSTKTLQFLGIEDCPNFM----ALQGSLKDLEALETLLISACRKLS 304 (360)
Q Consensus 236 ~~~~~~L~~L~L~~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~ 304 (360)
....+.+..++|++|+.. +.+.... ...|+|++|+|++|.... ++. -++ ...|++|-+.||++.+
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~ssls--q~apklk~L~LS~N~~~~~~~~el~-K~k-~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLS--QIAPKLKTLDLSHNHSKISSESELD-KLK-GLPLEELVLEGNPLCT 284 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHH--Hhcchhheeecccchhhhcchhhhh-hhc-CCCHHHeeecCCcccc
Confidence 344456666666666422 2222222 556677777777662111 111 122 2456666666666554
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.16 E-value=3.5 Score=38.78 Aligned_cols=35 Identities=26% Similarity=0.126 Sum_probs=14.6
Q ss_pred CCccEEEeccCCC--CcccCcccCCCCCCCEEeecCC
Q 039007 181 SGLRSLILVDCPS--LISLPSAVKCLSSSETLILIDC 215 (360)
Q Consensus 181 ~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~ 215 (360)
+.+..+.+++|+. ++.+.......|+|+.|+|+++
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4444444544431 2223333333444444444444
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=55.22 E-value=9.7 Score=19.62 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=6.8
Q ss_pred CccEEEEeCCCCc
Q 039007 64 FLRVLDLDDSTIE 76 (360)
Q Consensus 64 ~L~~L~l~~~~~~ 76 (360)
+|++|+++.|.++
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4555555555544
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=51.35 E-value=11 Score=19.58 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=5.6
Q ss_pred CccEEEEeCCCC
Q 039007 64 FLRVLDLDDSTI 75 (360)
Q Consensus 64 ~L~~L~l~~~~~ 75 (360)
+|++|++++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344444444444
No 88
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=42.05 E-value=40 Score=19.70 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=11.0
Q ss_pred ccCCCCcceEEEee
Q 039007 6 CQSIPKRVRHLSFV 19 (360)
Q Consensus 6 ~~~~~~~l~~L~l~ 19 (360)
.+.+|+.|+.|.+.
T Consensus 7 ~~~iP~~l~~L~~g 20 (44)
T PF05725_consen 7 PGSIPSSLKSLIFG 20 (44)
T ss_pred CCeeCCCCeEEEEC
Confidence 46788888888883
Done!