Query 039007
Match_columns 360
No_of_seqs 181 out of 2396
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 08:38:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.7E-33 2.3E-37 273.3 17.9 310 11-325 318-715 (768)
2 3v47_A TOLL-like receptor 5B a 100.0 1.7E-31 5.9E-36 248.3 23.2 301 9-325 28-406 (455)
3 2id5_A Lingo-1, leucine rich r 100.0 1.6E-31 5.6E-36 249.9 22.2 306 4-326 25-332 (477)
4 3rgz_A Protein brassinosteroid 100.0 9.8E-32 3.3E-36 265.0 18.7 326 11-355 294-716 (768)
5 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-30 7.6E-35 249.3 22.5 140 4-147 25-166 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.8E-29 6.2E-34 243.0 25.8 313 4-324 26-435 (606)
7 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-29 6E-34 238.7 23.9 134 4-146 14-150 (520)
8 4ecn_A Leucine-rich repeat pro 100.0 4.6E-30 1.6E-34 252.7 19.3 204 10-217 322-631 (876)
9 2z63_A TOLL-like receptor 4, v 100.0 2.5E-29 8.4E-34 240.3 23.5 339 4-355 21-530 (570)
10 4eco_A Uncharacterized protein 100.0 1E-29 3.5E-34 245.3 20.7 324 11-355 249-599 (636)
11 4eco_A Uncharacterized protein 100.0 2.8E-30 9.7E-35 249.2 15.9 324 11-355 206-578 (636)
12 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.1E-29 2.4E-33 236.6 23.8 133 5-146 46-181 (562)
13 2id5_A Lingo-1, leucine rich r 100.0 1.2E-28 4E-33 230.6 24.9 316 14-355 14-332 (477)
14 3t6q_A CD180 antigen; protein- 100.0 2.4E-28 8.3E-33 235.1 25.6 210 131-355 275-512 (606)
15 4fmz_A Internalin; leucine ric 100.0 3.5E-28 1.2E-32 218.0 23.8 303 11-356 44-346 (347)
16 3v47_A TOLL-like receptor 5B a 100.0 3.5E-29 1.2E-33 232.7 17.3 317 14-356 13-408 (455)
17 1ziw_A TOLL-like receptor 3; i 100.0 3.8E-28 1.3E-32 236.9 24.0 162 4-169 18-183 (680)
18 4ecn_A Leucine-rich repeat pro 100.0 3.1E-28 1.1E-32 239.7 23.2 323 11-355 491-839 (876)
19 3j0a_A TOLL-like receptor 5; m 100.0 6.2E-28 2.1E-32 240.3 25.2 301 9-325 22-373 (844)
20 3o6n_A APL1; leucine-rich repe 100.0 7.2E-28 2.5E-32 219.4 22.9 282 11-324 45-328 (390)
21 4fmz_A Internalin; leucine ric 100.0 8.7E-28 3E-32 215.4 22.9 280 10-325 65-344 (347)
22 1ogq_A PGIP-2, polygalacturona 100.0 3E-28 1E-32 215.1 15.7 250 36-328 50-305 (313)
23 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-27 4.3E-32 227.5 20.5 314 5-325 20-421 (549)
24 3oja_B Anopheles plasmodium-re 100.0 3.2E-27 1.1E-31 226.5 22.4 282 11-324 51-334 (597)
25 2z81_A CD282 antigen, TOLL-lik 100.0 9.9E-28 3.4E-32 228.2 17.9 131 11-145 50-183 (549)
26 2z7x_B TOLL-like receptor 1, v 100.0 7.7E-27 2.6E-31 220.6 23.1 102 11-122 45-150 (520)
27 1xku_A Decorin; proteoglycan, 100.0 1.4E-26 4.7E-31 206.2 23.3 286 12-324 32-329 (330)
28 2z63_A TOLL-like receptor 4, v 100.0 1.7E-27 6E-32 227.5 18.3 308 11-325 52-529 (570)
29 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-26 7.6E-31 224.4 25.5 105 11-119 49-154 (680)
30 2ft3_A Biglycan; proteoglycan, 100.0 5.5E-27 1.9E-31 208.9 19.4 286 12-325 34-331 (332)
31 1ogq_A PGIP-2, polygalacturona 99.9 3E-27 1E-31 208.7 16.9 252 11-305 50-306 (313)
32 3vq2_A TLR4, TOLL-like recepto 99.9 8.4E-27 2.9E-31 224.4 21.4 290 13-326 263-557 (606)
33 4g8a_A TOLL-like receptor 4; l 99.9 1.8E-26 6.1E-31 223.1 23.0 139 4-147 45-186 (635)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.7E-26 9.1E-31 218.8 23.7 289 11-325 76-508 (562)
35 1o6v_A Internalin A; bacterial 99.9 7E-26 2.4E-30 211.0 25.1 188 11-216 46-254 (466)
36 3o6n_A APL1; leucine-rich repe 99.9 2.4E-26 8.2E-31 209.3 20.7 282 11-326 69-351 (390)
37 4fcg_A Uncharacterized protein 99.9 3.1E-26 1.1E-30 203.4 18.3 229 36-322 81-309 (328)
38 1o6v_A Internalin A; bacterial 99.9 3.1E-25 1.1E-29 206.6 25.2 191 10-217 67-277 (466)
39 3oja_B Anopheles plasmodium-re 99.9 6E-26 2E-30 217.7 19.7 282 11-326 75-357 (597)
40 3bz5_A Internalin-J, INLJ; leu 99.9 5.3E-25 1.8E-29 203.9 25.1 182 11-216 42-223 (457)
41 3j0a_A TOLL-like receptor 5; m 99.9 2.3E-25 7.8E-30 221.8 24.1 275 11-301 48-373 (844)
42 4fcg_A Uncharacterized protein 99.9 3.2E-26 1.1E-30 203.3 15.3 233 62-355 80-313 (328)
43 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-24 4.4E-29 201.4 22.1 279 11-325 64-350 (457)
44 1xku_A Decorin; proteoglycan, 99.9 6.7E-24 2.3E-28 188.8 23.5 288 37-353 32-329 (330)
45 2ft3_A Biglycan; proteoglycan, 99.9 3.8E-24 1.3E-28 190.5 20.5 287 37-353 34-330 (332)
46 2z80_A TOLL-like receptor 2, v 99.9 9E-25 3.1E-29 196.2 14.3 253 36-305 52-316 (353)
47 2z66_A Variable lymphocyte rec 99.9 1.6E-24 5.5E-29 190.7 14.9 207 6-215 23-233 (306)
48 3zyi_A Leucine-rich repeat-con 99.9 2.6E-23 8.8E-28 192.9 21.5 243 66-325 57-301 (452)
49 1z7x_W Ribonuclease inhibitor; 99.9 1.3E-26 4.4E-31 215.8 -1.7 208 9-216 1-238 (461)
50 2z66_A Variable lymphocyte rec 99.9 1.2E-23 4.3E-28 185.0 17.4 246 39-304 10-262 (306)
51 3zyj_A Leucine-rich repeat-con 99.9 3.4E-23 1.2E-27 191.5 20.8 150 63-215 64-217 (440)
52 1ozn_A Reticulon 4 receptor; N 99.9 3.5E-24 1.2E-28 186.6 13.4 267 14-301 14-285 (285)
53 4g8a_A TOLL-like receptor 4; l 99.9 4.3E-23 1.5E-27 199.3 21.9 129 36-168 52-184 (635)
54 2z80_A TOLL-like receptor 2, v 99.9 5.3E-24 1.8E-28 191.2 13.6 276 31-325 26-312 (353)
55 3zyi_A Leucine-rich repeat-con 99.9 7.2E-23 2.5E-27 189.9 19.9 231 5-252 69-302 (452)
56 3zyj_A Leucine-rich repeat-con 99.9 8.2E-23 2.8E-27 188.9 20.1 232 4-252 57-291 (440)
57 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-24 3.6E-29 192.8 6.9 247 30-329 28-277 (317)
58 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-22 3.7E-27 177.1 18.2 266 39-324 14-284 (285)
59 1z7x_W Ribonuclease inhibitor; 99.9 2.4E-25 8.2E-30 207.2 0.4 305 11-325 28-409 (461)
60 1jl5_A Outer protein YOPM; leu 99.9 2.9E-22 1E-26 185.4 20.5 275 11-326 111-408 (454)
61 1jl5_A Outer protein YOPM; leu 99.9 1.1E-21 3.7E-26 181.6 23.7 275 8-325 88-368 (454)
62 3o53_A Protein LRIM1, AGAP0063 99.9 9.6E-24 3.3E-28 186.6 9.1 243 9-305 32-277 (317)
63 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-21 5.5E-26 186.1 23.9 256 12-326 41-296 (622)
64 1wwl_A Monocyte differentiatio 99.9 8.3E-24 2.8E-28 186.6 3.5 245 32-325 39-307 (312)
65 1wwl_A Monocyte differentiatio 99.9 7.8E-23 2.7E-27 180.3 9.6 241 13-303 45-309 (312)
66 3oja_A Leucine-rich immune mol 99.9 1E-22 3.4E-27 190.2 10.6 234 36-298 34-270 (487)
67 3ogk_B Coronatine-insensitive 99.9 1.8E-23 6.2E-28 200.6 3.7 314 10-325 137-524 (592)
68 3ogk_B Coronatine-insensitive 99.9 4.7E-23 1.6E-27 197.7 5.4 311 10-325 111-499 (592)
69 3g06_A SSPH2 (leucine-rich rep 99.9 5.6E-21 1.9E-25 182.3 19.2 251 4-310 54-304 (622)
70 3oja_A Leucine-rich immune mol 99.9 1.3E-21 4.6E-26 182.6 13.4 244 55-324 22-272 (487)
71 2z62_A TOLL-like receptor 4, v 99.8 1.2E-20 4.2E-25 163.3 14.1 136 8-147 25-162 (276)
72 2ast_B S-phase kinase-associat 99.8 1.8E-21 6E-26 173.5 8.6 254 36-311 47-314 (336)
73 2ast_B S-phase kinase-associat 99.8 1.6E-21 5.5E-26 173.8 4.3 256 10-288 46-315 (336)
74 2xwt_C Thyrotropin receptor; s 99.8 8.8E-20 3E-24 154.5 14.8 174 37-216 32-216 (239)
75 2p1m_B Transport inhibitor res 99.8 1.9E-22 6.6E-27 193.5 -2.5 129 11-140 105-241 (594)
76 3rfs_A Internalin B, repeat mo 99.8 2.2E-20 7.6E-25 161.3 10.3 207 62-291 40-247 (272)
77 2o6q_A Variable lymphocyte rec 99.8 2E-19 6.9E-24 155.1 15.7 196 12-215 17-215 (270)
78 2p1m_B Transport inhibitor res 99.8 4.9E-22 1.7E-26 190.7 -1.5 132 11-144 66-221 (594)
79 1p9a_G Platelet glycoprotein I 99.8 3.5E-19 1.2E-23 155.1 16.3 200 61-278 8-207 (290)
80 2z62_A TOLL-like receptor 4, v 99.8 1.5E-19 5E-24 156.5 13.8 127 65-191 30-159 (276)
81 3rfs_A Internalin B, repeat mo 99.8 4.5E-19 1.5E-23 153.1 16.6 225 66-315 22-247 (272)
82 4glp_A Monocyte differentiatio 99.8 3.9E-19 1.3E-23 156.5 16.5 177 36-214 64-260 (310)
83 2o6q_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 153.6 15.6 185 4-193 30-217 (270)
84 2ca6_A RAN GTPase-activating p 99.8 6E-21 2E-25 173.4 3.7 265 28-323 24-339 (386)
85 2ca6_A RAN GTPase-activating p 99.8 1.5E-20 5E-25 170.8 6.2 258 11-300 32-340 (386)
86 1p9a_G Platelet glycoprotein I 99.8 6.7E-19 2.3E-23 153.3 15.2 149 64-216 32-183 (290)
87 1h6u_A Internalin H; cell adhe 99.8 1.6E-18 5.4E-23 152.3 15.2 143 63-215 41-183 (308)
88 1h6u_A Internalin H; cell adhe 99.8 1.7E-18 5.8E-23 152.2 15.4 194 31-252 36-229 (308)
89 3goz_A Leucine-rich repeat-con 99.8 6.8E-20 2.3E-24 164.9 3.9 254 17-305 4-299 (362)
90 3goz_A Leucine-rich repeat-con 99.8 3.3E-19 1.1E-23 160.4 7.8 250 41-325 3-295 (362)
91 2xwt_C Thyrotropin receptor; s 99.8 8.4E-18 2.9E-22 142.3 15.9 197 64-301 32-237 (239)
92 4glp_A Monocyte differentiatio 99.8 8.1E-19 2.8E-23 154.5 9.2 199 12-216 65-283 (310)
93 4ay9_X Follicle-stimulating ho 99.7 4.9E-17 1.7E-21 145.5 17.4 239 39-300 12-256 (350)
94 4ay9_X Follicle-stimulating ho 99.7 3.1E-17 1.1E-21 146.8 14.8 219 36-275 30-255 (350)
95 3m19_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 139.1 13.4 175 37-217 15-191 (251)
96 3m19_A Variable lymphocyte rec 99.7 5E-17 1.7E-21 138.5 13.8 176 11-193 14-191 (251)
97 2o6s_A Variable lymphocyte rec 99.7 5E-17 1.7E-21 134.4 10.5 178 14-206 10-190 (208)
98 1h6t_A Internalin B; cell adhe 99.7 2.3E-16 7.8E-21 137.4 13.8 170 32-216 42-211 (291)
99 1h6t_A Internalin B; cell adhe 99.7 2.8E-16 9.6E-21 136.8 13.7 167 11-193 46-212 (291)
100 4ezg_A Putative uncharacterize 99.7 5E-16 1.7E-20 127.2 13.9 152 33-193 41-193 (197)
101 4ezg_A Putative uncharacterize 99.7 1.6E-16 5.4E-21 130.2 10.8 151 60-216 41-192 (197)
102 2o6s_A Variable lymphocyte rec 99.7 1E-15 3.6E-20 126.4 14.1 146 67-215 11-158 (208)
103 3cvr_A Invasion plasmid antige 99.7 2.1E-16 7.3E-21 149.0 11.0 195 63-289 59-253 (571)
104 1m9s_A Internalin B; cell inva 99.7 6.6E-16 2.3E-20 147.2 13.7 148 59-216 61-208 (605)
105 1m9s_A Internalin B; cell inva 99.6 4.1E-16 1.4E-20 148.6 9.5 168 11-194 43-210 (605)
106 2v9t_B SLIT homolog 2 protein 99.6 2.6E-15 8.8E-20 125.1 11.7 147 14-168 14-163 (220)
107 3cvr_A Invasion plasmid antige 99.6 2E-15 6.8E-20 142.4 11.6 184 37-260 60-250 (571)
108 2v70_A SLIT-2, SLIT homolog 2 99.6 3.1E-15 1.1E-19 124.6 11.2 150 13-169 13-165 (220)
109 3e6j_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 124.2 12.0 147 13-168 21-170 (229)
110 2v9t_B SLIT homolog 2 protein 99.6 1.3E-14 4.6E-19 120.8 13.1 147 67-216 15-163 (220)
111 1xeu_A Internalin C; cellular 99.6 2.2E-15 7.4E-20 129.1 8.3 167 34-216 17-183 (263)
112 1xeu_A Internalin C; cellular 99.6 3E-15 1E-19 128.3 7.5 165 12-193 20-184 (263)
113 2xot_A Amphoterin-induced prot 99.6 8.1E-15 2.8E-19 131.6 9.7 171 14-192 21-200 (361)
114 2ell_A Acidic leucine-rich nuc 99.6 7E-15 2.4E-19 117.1 8.1 128 36-167 24-157 (168)
115 2v70_A SLIT-2, SLIT homolog 2 99.6 4.5E-14 1.6E-18 117.5 13.2 147 67-216 15-164 (220)
116 3e6j_A Variable lymphocyte rec 99.5 3.8E-14 1.3E-18 118.8 12.4 146 67-216 23-170 (229)
117 2xot_A Amphoterin-induced prot 99.5 1.5E-14 5.1E-19 129.9 9.9 126 65-191 41-173 (361)
118 1dce_A Protein (RAB geranylger 99.5 1.8E-16 6E-21 150.2 -3.6 204 83-321 346-567 (567)
119 1dce_A Protein (RAB geranylger 99.5 1E-16 3.5E-21 151.8 -5.9 178 32-218 345-546 (567)
120 2ell_A Acidic leucine-rich nuc 99.5 3.6E-14 1.2E-18 113.0 9.7 129 62-192 23-158 (168)
121 4b8c_D Glucose-repressible alc 99.5 6E-15 2.1E-19 143.9 5.0 163 11-177 173-336 (727)
122 3sb4_A Hypothetical leucine ri 99.5 6.4E-14 2.2E-18 124.1 10.9 80 236-320 246-327 (329)
123 2je0_A Acidic leucine-rich nuc 99.5 2.5E-14 8.5E-19 111.5 6.1 126 36-164 17-147 (149)
124 2je0_A Acidic leucine-rich nuc 99.5 3.7E-14 1.3E-18 110.5 6.7 126 62-189 16-148 (149)
125 3sb4_A Hypothetical leucine ri 99.5 1E-12 3.4E-17 116.4 14.9 103 179-297 224-328 (329)
126 1w8a_A SLIT protein; signaling 99.4 1E-12 3.6E-17 106.9 10.7 124 66-192 11-137 (192)
127 1a9n_A U2A', U2A'; complex (nu 99.4 2.5E-13 8.7E-18 108.9 6.8 133 30-169 13-152 (176)
128 4b8c_D Glucose-repressible alc 99.4 3.4E-14 1.2E-18 138.6 1.8 159 36-201 173-336 (727)
129 1ds9_A Outer arm dynein; leuci 99.4 8.5E-15 2.9E-19 120.0 -3.5 134 32-169 14-152 (198)
130 1a9n_A U2A', U2A'; complex (nu 99.4 4.9E-13 1.7E-17 107.2 6.7 129 59-192 15-151 (176)
131 2wfh_A SLIT homolog 2 protein 99.4 3.7E-12 1.3E-16 103.6 11.7 99 66-167 13-112 (193)
132 1w8a_A SLIT protein; signaling 99.4 2.5E-12 8.7E-17 104.5 10.0 105 64-168 30-137 (192)
133 2wfh_A SLIT homolog 2 protein 99.3 4.9E-12 1.7E-16 102.9 10.8 105 63-167 31-136 (193)
134 1ds9_A Outer arm dynein; leuci 99.3 3.3E-14 1.1E-18 116.4 -4.7 149 59-211 14-180 (198)
135 4fdw_A Leucine rich hypothetic 99.3 3.4E-10 1.2E-14 102.5 20.2 266 32-324 109-380 (401)
136 2o6r_A Variable lymphocyte rec 99.3 3.2E-11 1.1E-15 96.6 11.0 104 63-167 28-134 (177)
137 2o6r_A Variable lymphocyte rec 99.3 1.6E-11 5.3E-16 98.5 9.1 128 13-149 9-139 (177)
138 4fdw_A Leucine rich hypothetic 99.3 2E-10 6.9E-15 104.0 17.1 245 29-301 129-381 (401)
139 2r9u_A Variable lymphocyte rec 99.1 6.3E-10 2.2E-14 88.7 10.1 99 66-167 15-115 (174)
140 3g39_A Variable lymphocyte rec 99.1 5.9E-10 2E-14 88.5 9.8 100 65-167 11-112 (170)
141 4fs7_A Uncharacterized protein 99.0 9E-09 3.1E-13 93.2 17.7 274 28-323 63-375 (394)
142 3un9_A NLR family member X1; l 99.0 3.6E-11 1.2E-15 107.9 1.3 161 35-195 71-253 (372)
143 3g39_A Variable lymphocyte rec 99.0 1.3E-09 4.3E-14 86.6 9.2 103 38-147 11-115 (170)
144 4fs7_A Uncharacterized protein 99.0 1.6E-08 5.3E-13 91.7 16.9 278 9-319 69-393 (394)
145 2r9u_A Variable lymphocyte rec 99.0 1.2E-09 4.2E-14 87.0 8.2 103 13-123 14-118 (174)
146 3un9_A NLR family member X1; l 99.0 8E-11 2.7E-15 105.6 1.1 183 34-218 45-252 (372)
147 4gt6_A Cell surface protein; l 99.0 1.2E-07 4E-12 85.9 21.2 271 29-328 56-371 (394)
148 2ra8_A Uncharacterized protein 98.9 8.3E-09 2.8E-13 91.9 11.8 106 11-118 107-227 (362)
149 2ifg_A High affinity nerve gro 98.8 1.9E-08 6.4E-13 89.5 9.1 87 59-147 27-116 (347)
150 2ra8_A Uncharacterized protein 98.8 3.8E-08 1.3E-12 87.6 10.4 66 239-304 251-321 (362)
151 4gt6_A Cell surface protein; l 98.7 7.2E-07 2.5E-11 80.7 18.5 285 12-324 65-388 (394)
152 2ifg_A High affinity nerve gro 98.6 6.7E-08 2.3E-12 85.9 7.8 103 14-123 11-116 (347)
153 3e4g_A ATP synthase subunit S, 98.5 2.5E-08 8.4E-13 78.5 2.2 89 240-330 61-155 (176)
154 4h09_A Hypothetical leucine ri 98.5 3.6E-05 1.2E-09 69.0 22.5 125 179-323 215-342 (379)
155 4h09_A Hypothetical leucine ri 98.5 3.6E-05 1.2E-09 69.0 21.6 267 29-323 39-319 (379)
156 1io0_A Tropomodulin; LRR prote 98.4 5.4E-08 1.8E-12 78.2 1.3 69 28-96 28-103 (185)
157 3e4g_A ATP synthase subunit S, 98.4 1.8E-07 6.2E-12 73.5 4.0 67 239-305 84-154 (176)
158 1io0_A Tropomodulin; LRR prote 98.3 4.8E-07 1.6E-11 72.6 4.1 113 10-122 35-163 (185)
159 3rw6_A Nuclear RNA export fact 98.2 3E-07 1E-11 77.7 0.8 106 33-140 138-257 (267)
160 3rw6_A Nuclear RNA export fact 97.8 1.9E-05 6.5E-10 66.7 5.1 84 33-118 167-259 (267)
161 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0018 6.2E-08 51.7 4.9 120 27-146 32-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0013 4.5E-08 52.5 2.2 117 52-168 30-168 (197)
163 3rfe_A Platelet glycoprotein I 94.2 0.038 1.3E-06 40.9 3.7 36 37-75 32-67 (130)
164 3rfe_A Platelet glycoprotein I 93.7 0.13 4.6E-06 37.9 5.8 51 67-120 12-65 (130)
165 2lz0_A Uncharacterized protein 35.9 77 0.0026 21.5 5.2 9 61-69 18-26 (100)
166 2lz0_A Uncharacterized protein 35.0 38 0.0013 23.1 3.5 11 107-117 17-27 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.7e-33 Score=273.28 Aligned_cols=310 Identities=18% Similarity=0.169 Sum_probs=230.3
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhc---------------------------CC
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISK---------------------------SQ 63 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---------------------------l~ 63 (360)
++++.|++.+|.+.+......+.++++|++|++++|.+. +.++..+.+ ++
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS---GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE---ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC---ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence 557777777777765233344777777777777777652 122222222 44
Q ss_pred CccEEEEeCCCCc-ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007 64 FLRVLDLDDSTIE-VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT 142 (360)
Q Consensus 64 ~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 142 (360)
.|++|++++|.++ .+|..+..+++|++|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 5666666666655 566667777778888887775555677777778888888888777777777778888888888888
Q ss_pred ccccc-cccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCcccc
Q 039007 143 TKQKS-LQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLN 221 (360)
Q Consensus 143 ~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 221 (360)
+|.+. ..+..+..+++|+.|++++|...+.+|..++.+++|++|++++|.....+|..++.+++|+.|++++|......
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 88776 34667788888888888888776677888888888888888888877788888888889999998887644222
Q ss_pred ccccccC-----------------------------------------------------------CCCCCCCCCCCCcc
Q 039007 222 LNIEMEG-----------------------------------------------------------EGSHHDRDNTRTHL 242 (360)
Q Consensus 222 ~~~~~~~-----------------------------------------------------------~~~~~~~~~~~~~L 242 (360)
+...+.. .+..+.....+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 2111000 01112234455688
Q ss_pred ceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceeccc
Q 039007 243 QKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIK 322 (360)
Q Consensus 243 ~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 322 (360)
+.|++++|...+.+|..+ +.++.|+.|+|++|...+.+|..++++++|+.|++++|++.+.+|..+..++.|++|+++
T Consensus 635 ~~LdLs~N~l~g~ip~~l--~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CEEECCSSCCBSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cEEECcCCcccccCCHHH--hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 999999999888899888 889999999999997777999999999999999999999888999999999999999998
Q ss_pred CCh
Q 039007 323 ECP 325 (360)
Q Consensus 323 ~c~ 325 (360)
+|+
T Consensus 713 ~N~ 715 (768)
T 3rgz_A 713 NNN 715 (768)
T ss_dssp SSE
T ss_pred CCc
Confidence 873
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-31 Score=248.28 Aligned_cols=301 Identities=17% Similarity=0.101 Sum_probs=221.1
Q ss_pred CCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcc-cCcCCCCCCC
Q 039007 9 IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEV-LPREIGNLKH 87 (360)
Q Consensus 9 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~ 87 (360)
+|++++.|++.++.+.. ..+..|.++++|++|++++|.+. ....+..|.++++|++|++++|.+.. .|..+..+++
T Consensus 28 l~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCCccCEEEecCCccCc-CChhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 78999999999999987 56778999999999999999763 23345668999999999999999985 4778999999
Q ss_pred cCeEeccccccccccchh--hhcCCccceEeeccccCcCcCCcc-ccccccccEEEEeccccccc-cccCC---------
Q 039007 88 MRYLDLSRYCQIKKLPNS--ICELQSLQTLILRGCLKLEELPKD-IRYLVSLRMFVVTTKQKSLQ-ESGIA--------- 154 (360)
Q Consensus 88 L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~-~~~~~--------- 154 (360)
|++|++++|...+..+.. +..+++|++|++++|...+..|.. +..+++|+.|++++|.+... +..+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 999999998555445544 888999999999998766666765 78999999999999987654 22222
Q ss_pred -------------------------CCCCCcEeeccCCCchhhhHhhhcC------------------------------
Q 039007 155 -------------------------CLSSLRSLIISHCWNLEYLFEHIGQ------------------------------ 179 (360)
Q Consensus 155 -------------------------~l~~L~~L~l~~~~~~~~~~~~l~~------------------------------ 179 (360)
.+++|+.|++++|......+..+..
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 3367888888888665544443322
Q ss_pred ---------CCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCc
Q 039007 180 ---------LSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGL 250 (360)
Q Consensus 180 ---------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 250 (360)
.++|+.|++++|......+..++.+++|++|++++|..... .+.....+++|+.|++++|
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-----------DDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECCSS
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc-----------ChhHhcCcccCCEEECCCC
Confidence 24666677766665555666677777777777777654322 1223445667888888877
Q ss_pred cCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCCh
Q 039007 251 KQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP 325 (360)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 325 (360)
......+..+ ..+++|++|++++|......|..+.++++|++|++++|++.+..+..+..+++|++|++++|+
T Consensus 334 ~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 334 FLGSIDSRMF--ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCCEECGGGG--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCcChhHh--cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 6544434555 677888888888875544556677778888888888877554444455677888888887764
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=249.90 Aligned_cols=306 Identities=15% Similarity=0.080 Sum_probs=254.4
Q ss_pred ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CC
Q 039007 4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EI 82 (360)
Q Consensus 4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~ 82 (360)
..+..+|++++.|++.++.+.. .....|.++++|++|++++|.+ ....+..|.++++|++|++++|.++.+|. .+
T Consensus 25 ~ip~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 100 (477)
T 2id5_A 25 AVPEGIPTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIV---SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100 (477)
T ss_dssp SCCSCCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCSCCTTSS
T ss_pred cCCCCCCCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCcc---CEeChhhhhCCccCCEEECCCCcCCccCcccc
Confidence 3466788999999999999988 5567899999999999999987 45556779999999999999999997776 47
Q ss_pred CCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcE
Q 039007 83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRS 161 (360)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~ 161 (360)
..+++|++|++++|......+..+..+++|+.|++++|......|..+..+++|+.|++++|.+...+ ..+..+++|+.
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 89999999999998665556777899999999999998766666778899999999999999888764 46889999999
Q ss_pred eeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCc
Q 039007 162 LIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTH 241 (360)
Q Consensus 162 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (360)
|++.+|......+..+..+++|+.|++++|.....++.......+|++|++++|...... ......+++
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-----------~~~~~~l~~ 249 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-----------YLAVRHLVY 249 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC-----------HHHHTTCTT
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC-----------HHHhcCccc
Confidence 999998765555567889999999999999888888887777789999999998643211 112456789
Q ss_pred cceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecc
Q 039007 242 LQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSI 321 (360)
Q Consensus 242 L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 321 (360)
|+.|+|++|......+..+ ..+++|++|++++|......+..+.++++|+.|++++|.+....+..+..+++|++|++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSML--HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp CCEEECCSSCCCEECTTSC--TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cCeeECCCCcCCccChhhc--cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 9999999987554333344 78899999999999666666888999999999999999866555566788999999999
Q ss_pred cCChh
Q 039007 322 KECPA 326 (360)
Q Consensus 322 ~~c~~ 326 (360)
++||-
T Consensus 328 ~~N~l 332 (477)
T 2id5_A 328 DSNPL 332 (477)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 98863
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=9.8e-32 Score=264.99 Aligned_cols=326 Identities=15% Similarity=0.122 Sum_probs=231.6
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcCCCCCC-Cc
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPREIGNLK-HM 88 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~-~L 88 (360)
++++.|++.+|.+.+ .++..+..+++|++|++++|.+. .......+.++++|++|++++|.+. .+|..+..++ +|
T Consensus 294 ~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~--~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L 370 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYG-AVPPFFGSCSLLESLALSSNNFS--GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370 (768)
T ss_dssp TTCSEEECCSSEEEE-CCCGGGGGCTTCCEEECCSSEEE--EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTC
T ss_pred CcCCEEECcCCcCCC-ccchHHhcCCCccEEECCCCccc--CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCC
Confidence 789999999999887 67788999999999999999862 2333345899999999999999877 6666665554 55
Q ss_pred CeEeccccc--------------------------cccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007 89 RYLDLSRYC--------------------------QIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT 142 (360)
Q Consensus 89 ~~L~l~~~~--------------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 142 (360)
++|++++|. ..+.+|..+..+++|+.|++++|...+.+|..++.+++|+.|+++
T Consensus 371 ~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 450 (768)
T 3rgz_A 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450 (768)
T ss_dssp SEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred cEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECC
Confidence 555555443 333445555566666666666655555556666666666666666
Q ss_pred ccccc-cccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCcccc
Q 039007 143 TKQKS-LQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLN 221 (360)
Q Consensus 143 ~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 221 (360)
+|.+. ..+..+..+++|+.|++++|...+.+|..+..+++|++|++++|.....+|..++.+++|++|++++|.....
T Consensus 451 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~- 529 (768)
T 3rgz_A 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN- 529 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE-
T ss_pred CCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc-
Confidence 66555 2345566666666666666655555566666667777777777666556666666677777777776654321
Q ss_pred ccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhc---------------------------------------
Q 039007 222 LNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQ--------------------------------------- 262 (360)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~--------------------------------------- 262 (360)
.+.....+++|+.|++++|...+.+|..+..
T Consensus 530 ----------~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 530 ----------IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ----------CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ----------CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 2334556778999999888766666544311
Q ss_pred -----------------------------CCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCC
Q 039007 263 -----------------------------GSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHL 313 (360)
Q Consensus 263 -----------------------------~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 313 (360)
..+++|++|++++|...+.+|..++.+++|+.|++++|.+.+.+|..++.+
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 234678999999997777899999999999999999999888999999999
Q ss_pred CccceecccCChhHHhhcCCCCCCCCccccccceeeeccccc
Q 039007 314 TTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMT 355 (360)
Q Consensus 314 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (360)
++|++|++++|.. ....+..+..+..+..+++..|.+
T Consensus 680 ~~L~~LdLs~N~l-----~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 680 RGLNILDLSSNKL-----DGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp TTCCEEECCSSCC-----EECCCGGGGGCCCCSEEECCSSEE
T ss_pred CCCCEEECCCCcc-----cCcCChHHhCCCCCCEEECcCCcc
Confidence 9999999999942 223445566677788888877654
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.2e-30 Score=249.33 Aligned_cols=140 Identities=15% Similarity=0.096 Sum_probs=105.5
Q ss_pred ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCC
Q 039007 4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREI 82 (360)
Q Consensus 4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~ 82 (360)
.-+..+|++++.|++.++.+.. .....|.++++|++|++++|.+ ....+..|.++++|++|++++|.++.+ |..+
T Consensus 25 ~ip~~~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l---~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 100 (606)
T 3vq2_A 25 KVPDDIPSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEI---ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100 (606)
T ss_dssp SCCTTSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred cCCCCCCCCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcc---cccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence 3456688899999999999877 5566889999999999999886 445566788889999999999888855 6778
Q ss_pred CCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcC-cCCccccccccccEEEEeccccc
Q 039007 83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE-ELPKDIRYLVSLRMFVVTTKQKS 147 (360)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~ 147 (360)
.++++|++|++++|...+..+..++++++|++|++++|...+ .+|..++.+++|++|++++|.+.
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 888888888888874433333557777777777777765543 46777777777777777666543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.8e-29 Score=242.98 Aligned_cols=313 Identities=17% Similarity=0.094 Sum_probs=196.8
Q ss_pred ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcc-cCcCC
Q 039007 4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEV-LPREI 82 (360)
Q Consensus 4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~ 82 (360)
..+..+|+.++.|++.++.+.. ..+..|.++++|++|++++|.+ ....+..|.++++|++|++++|.+.. .|..+
T Consensus 26 ~iP~~l~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 26 EIPGTLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQI---YWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp SCCTTSCTTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred cCcCCCCCcCcEEEccCCccCc-CChhHhccCccceEEECCCCcc---ceeChhhccCccccCeeeCCCCcccccChhhh
Confidence 4466788999999999999987 5577899999999999999987 45556779999999999999999884 46788
Q ss_pred CCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcC-cCCccccccccccEEEEeccccccc-cccCCCCCCCc
Q 039007 83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE-ELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLR 160 (360)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~ 160 (360)
..+++|++|++++|...+..+..++.+++|++|++++|...+ ..|.. ..+++|+.|++++|.+... +..+..+++|+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT-CCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccc-cCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 999999999999885444335667888999999999876554 23433 3477888888877766544 33344444444
Q ss_pred --EeeccCCCc---------------------------------------------------------------------
Q 039007 161 --SLIISHCWN--------------------------------------------------------------------- 169 (360)
Q Consensus 161 --~L~l~~~~~--------------------------------------------------------------------- 169 (360)
.|++.+|..
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence 444443321
Q ss_pred ------hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccc----------cccC---CC
Q 039007 170 ------LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNI----------EMEG---EG 230 (360)
Q Consensus 170 ------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------~~~~---~~ 230 (360)
....+..++.+++|++|++++|. .+.+|+.+..+++|++|++++|......... .+.+ ..
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred eecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 11112225566777788887774 3466777777777777777776543321100 0000 00
Q ss_pred CC-CCCCCCCCccceEEecCccCCCCc--hhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCC
Q 039007 231 SH-HDRDNTRTHLQKLFVSGLKQLLDL--PQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLP 307 (360)
Q Consensus 231 ~~-~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 307 (360)
.. ......+++|+.|++++|...... +..+ ..+++|++|++++|......+..+..+++|++|++++|++....+
T Consensus 340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ccchhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 01 112344556666666665533222 2223 455666666666654434444555555556666665555443322
Q ss_pred -ccccCCCccceecccCC
Q 039007 308 -EDIHHLTTLKTLSIKEC 324 (360)
Q Consensus 308 -~~~~~~~~L~~L~l~~c 324 (360)
..+..+++|++|++++|
T Consensus 418 ~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp CCTTTTCTTCCEEECTTC
T ss_pred chhhhCcccCCEEECCCC
Confidence 22445555555555555
No 7
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=238.68 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=106.9
Q ss_pred ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCC
Q 039007 4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIG 83 (360)
Q Consensus 4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 83 (360)
..+..+|++++.|++.++.+.. .....|.++++|++|++++|.+ ....+..|.++++|++|++++|.++.+|..
T Consensus 14 ~ip~~~~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-- 87 (520)
T 2z7x_B 14 HVPKDLSQKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRI---QYLDISVFKFNQELEYLDLSHNKLVKISCH-- 87 (520)
T ss_dssp SCCCSCCTTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCC---CEEEGGGGTTCTTCCEEECCSSCCCEEECC--
T ss_pred cccccccccccEEECCCCcccc-cChhhccccccccEEecCCCcc---CCcChHHhhcccCCCEEecCCCceeecCcc--
Confidence 3456677899999999999987 5567899999999999999987 455577899999999999999999988876
Q ss_pred CCCCcCeEecccccccc-ccchhhhcCCccceEeeccccCcCcCCccccccccc--cEEEEecccc
Q 039007 84 NLKHMRYLDLSRYCQIK-KLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSL--RMFVVTTKQK 146 (360)
Q Consensus 84 ~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~L~l~~~~~ 146 (360)
.+++|++|++++|...+ .+|..++++++|++|++++|...+ ..+..+++| +.|++++|.+
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 89999999999985544 467889999999999999875443 234444444 5555555544
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=4.6e-30 Score=252.67 Aligned_cols=204 Identities=19% Similarity=0.212 Sum_probs=164.8
Q ss_pred CCcceEEEeeeccccccchhhhhccCccccEEEE-eccCCCCc-------------------------------------
Q 039007 10 PKRVRHLSFVSASASRNDFSSLLSDLRRVRTILF-SINDENTS------------------------------------- 51 (360)
Q Consensus 10 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~------------------------------------- 51 (360)
..+|+.|+|.++.+.+ .+++.+.++++|++|++ ++|.+...
T Consensus 322 ~~~V~~L~Ls~~~L~G-~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKG-RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp TSCEEEEECTTTCCEE-EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCCEEEEECccCCCCC-cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 4789999999999988 77889999999999999 66632100
Q ss_pred ------------------------------------ccchHHHhhcCCCccEEEEeCCCCcc------------------
Q 039007 52 ------------------------------------ESFFTSCISKSQFLRVLDLDDSTIEV------------------ 77 (360)
Q Consensus 52 ------------------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~------------------ 77 (360)
-..+|..+.++++|++|++++|.++.
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00056779999999999999999886
Q ss_pred cCcCCC--CCCCcCeEeccccccccccchhhhcCCccceEeecccc-CcC-cCCccccccc-------cccEEEEecccc
Q 039007 78 LPREIG--NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCL-KLE-ELPKDIRYLV-------SLRMFVVTTKQK 146 (360)
Q Consensus 78 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~p~~~~~l~-------~L~~L~l~~~~~ 146 (360)
+|..+. ++++|++|++++|...+.+|..++++++|+.|++++|. +.+ .+|..++.++ +|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 899888 99999999999998888899889999999999999986 555 6777666665 899999998888
Q ss_pred ccccc--cCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCC-CCEEeecCCcC
Q 039007 147 SLQES--GIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSS-SETLILIDCKS 217 (360)
Q Consensus 147 ~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~ 217 (360)
..+|. .+.++++|+.|++++|... .+| .++.+++|+.|++++|... .+|..+..+++ |+.|++++|..
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence 87777 7888888888888887544 666 6777888888888887654 67777777777 77777777653
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.5e-29 Score=240.29 Aligned_cols=339 Identities=16% Similarity=0.147 Sum_probs=209.2
Q ss_pred ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCC
Q 039007 4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REI 82 (360)
Q Consensus 4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~ 82 (360)
..+..+|++++.|++.++.+.. .....|.++++|++|++++|.+ ....+..|.++++|++|++++|.++.++ ..+
T Consensus 21 ~ip~~l~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (570)
T 2z63_A 21 KIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (570)
T ss_dssp SCCSSSCSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred ccCCCccccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcC---CccCcccccCchhCCEEeCcCCcCCccCHhhh
Confidence 3456788899999999998877 5556788899999999998876 3444556778888888888888777544 456
Q ss_pred CCCCCcCeEeccccccccccch-hhhcCCccceEeeccccCcC-cCCccccccccccEEEEecccccccc-c--------
Q 039007 83 GNLKHMRYLDLSRYCQIKKLPN-SICELQSLQTLILRGCLKLE-ELPKDIRYLVSLRMFVVTTKQKSLQE-S-------- 151 (360)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~-~-------- 151 (360)
..+++|++|++++| .+..++. .++++++|++|++++|.... .+|..++.+++|++|++++|.+...+ .
T Consensus 97 ~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 97 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred cCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 66777777777665 3333332 35566666666666654333 34555556666666655554332210 0
Q ss_pred --------------------------------------------------------------------------------
Q 039007 152 -------------------------------------------------------------------------------- 151 (360)
Q Consensus 152 -------------------------------------------------------------------------------- 151 (360)
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~ 255 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred chhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence
Q ss_pred ---------------------cCCCCCCCcEeeccCCCchhhhHhhh---------------------------------
Q 039007 152 ---------------------GIACLSSLRSLIISHCWNLEYLFEHI--------------------------------- 177 (360)
Q Consensus 152 ---------------------~~~~l~~L~~L~l~~~~~~~~~~~~l--------------------------------- 177 (360)
.+..+++|+.|++.+|.. +.+|..+
T Consensus 256 ~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~ 334 (570)
T 2z63_A 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334 (570)
T ss_dssp GSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEES
T ss_pred ccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-hhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcC
Confidence 011122333333322211 0111000
Q ss_pred ---------cCCCCccEEEeccCCCCcc--cCcccCCCCCCCEEeecCCcCccccccc---------cccC---CC-CCC
Q 039007 178 ---------GQLSGLRSLILVDCPSLIS--LPSAVKCLSSSETLILIDCKSLNLNLNI---------EMEG---EG-SHH 233 (360)
Q Consensus 178 ---------~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------~~~~---~~-~~~ 233 (360)
..+++|+.|++++|..... .+..+..+++|++|++++|......... .+.+ .. ...
T Consensus 335 n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp CBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTS
T ss_pred CccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccch
Confidence 2445666666666543221 1344555666666666665432211100 0000 00 112
Q ss_pred CCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCc-ccccccccCccccccccccccccccCCCccccC
Q 039007 234 DRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNF-MALQGSLKDLEALETLLISACRKLSSLPEDIHH 312 (360)
Q Consensus 234 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 312 (360)
.....+++|+.|++++|......+..+ ..+++|++|++++|... ..+|..+..+++|++|++++|++.+..|..+..
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 492 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred hhhhcCCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence 345567789999999887666666666 78889999999998655 367888889999999999999877666788888
Q ss_pred CCccceecccCChhHHhhcCCCCCCCCccccccceeeeccccc
Q 039007 313 LTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMT 355 (360)
Q Consensus 313 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (360)
+++|++|++++|. + .......+..+.+++.+++.++.+
T Consensus 493 l~~L~~L~l~~n~-l----~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 493 LSSLQVLNMASNQ-L----KSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CTTCCEEECCSSC-C----SCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCCEEeCCCCc-C----CCCCHHHhhcccCCcEEEecCCcc
Confidence 8999999999884 2 222333455667788888877765
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1e-29 Score=245.34 Aligned_cols=324 Identities=13% Similarity=0.097 Sum_probs=254.0
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccC-CCCccc-chHHHhhcC------CCccEEEEeCCCCcccCc--
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSIND-ENTSES-FFTSCISKS------QFLRVLDLDDSTIEVLPR-- 80 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~-- 80 (360)
++++.|++.+|.+.+ .++..+.++++|++|++++|. + .+ .+|..+..+ ++|++|++++|.++.+|.
T Consensus 249 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l---~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 249 KDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGI---SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp TTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTS---CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred CCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCC---ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 678899999999888 677889999999999999997 6 43 566667665 999999999999999998
Q ss_pred CCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcccccccc-ccEEEEeccccccccccCCCCC--
Q 039007 81 EIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVS-LRMFVVTTKQKSLQESGIACLS-- 157 (360)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~l~~~~~~~~~~~~~~l~-- 157 (360)
.+..+++|++|++++|...+.+| .+..+++|+.|++++|... .+|..+..+++ |+.|++++|.+..+|..+..++
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccC
Confidence 89999999999999986555888 7899999999999998555 89999999999 9999999999988887777655
Q ss_pred CCcEeeccCCCchhhhHhhhc-------CCCCccEEEeccCCCCcccCcc-cCCCCCCCEEeecCCcCccccccccccCC
Q 039007 158 SLRSLIISHCWNLEYLFEHIG-------QLSGLRSLILVDCPSLISLPSA-VKCLSSSETLILIDCKSLNLNLNIEMEGE 229 (360)
Q Consensus 158 ~L~~L~l~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 229 (360)
+|+.|++++|......|..+. .+++|+.|++++|... .+|.. +..+++|++|++++|....... ..+.+.
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~~ 480 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPK-NSLKDE 480 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCS-SSSEET
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCH-HHhccc
Confidence 899999999987777777777 7789999999998655 66654 4568999999999987552211 100000
Q ss_pred CCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCcccccccccc------ccccc
Q 039007 230 GSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLIS------ACRKL 303 (360)
Q Consensus 230 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~------~~~~~ 303 (360)
......+++|+.|++++|... .+|..+....+++|++|++++|. ++.+|..+..+++|++|+++ +|.+.
T Consensus 481 ---~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 481 ---NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp ---TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred ---cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCccc
Confidence 000122338999999998755 77776622388999999999985 44588888899999999994 46666
Q ss_pred cCCCccccCCCccceecccCChhHHhhcCCCCCCCCccccccceeeeccccc
Q 039007 304 SSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMT 355 (360)
Q Consensus 304 ~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (360)
+.+|..+..+++|++|++++|.- . . .+..+. ..++.+++.++.+
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N~l-~-~----ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSNDI-R-K----VNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCC-C-B----CCSCCC--TTCCEEECCSCTT
T ss_pred ccChHHHhcCCCCCEEECCCCcC-C-c----cCHhHh--CcCCEEECcCCCC
Confidence 77888888899999999999864 1 1 122222 4677777777654
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.8e-30 Score=249.19 Aligned_cols=324 Identities=11% Similarity=0.082 Sum_probs=263.0
Q ss_pred CcceEEEeeeccccccc-----------------hhhhhc--cCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEe
Q 039007 11 KRVRHLSFVSASASRND-----------------FSSLLS--DLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLD 71 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 71 (360)
++++.|++.++.+++ . ++..+. ++++|++|++++|.+ ...+|..+.++++|++|+++
T Consensus 206 ~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 206 TKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN---LTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp TTCCEEEEESCCCCG-GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT---CSSCCTTTTTCSSCCEEECT
T ss_pred cCCCEEECcCCcccc-ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC---CccChHHHhcCCCCCEEECc
Confidence 578999999999887 3 677777 999999999999986 45566789999999999999
Q ss_pred CCC-Cc--ccCcCCCCC------CCcCeEeccccccccccch--hhhcCCccceEeeccccCcCcCCccccccccccEEE
Q 039007 72 DST-IE--VLPREIGNL------KHMRYLDLSRYCQIKKLPN--SICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFV 140 (360)
Q Consensus 72 ~~~-~~--~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 140 (360)
+|. ++ .+|..+..+ ++|++|++++|. +..+|. .++++++|+.|++++|...+.+| .++.+++|+.|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 998 87 478777765 999999999984 458888 89999999999999987777899 899999999999
Q ss_pred EeccccccccccCCCCCC-CcEeeccCCCchhhhHhhhcCCC--CccEEEeccCCCCcccCcccC-------CCCCCCEE
Q 039007 141 VTTKQKSLQESGIACLSS-LRSLIISHCWNLEYLFEHIGQLS--GLRSLILVDCPSLISLPSAVK-------CLSSSETL 210 (360)
Q Consensus 141 l~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L 210 (360)
+++|.+..++..+..+++ |+.|++++|... .+|..+..++ +|+.|++++|......|..+. .+++|++|
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 999999988888999999 999999998644 7777766654 899999999988777777777 77899999
Q ss_pred eecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcC------CCCCCcEEecccCCCcccccc
Q 039007 211 ILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQG------STKTLQFLGIEDCPNFMALQG 284 (360)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~------~~~~L~~L~L~~~~~~~~~~~ 284 (360)
++++|...... ......+++|+.|++++|... .+|...+.. .+++|++|++++|. ++.+|.
T Consensus 439 ~Ls~N~l~~lp-----------~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~ 505 (636)
T 4eco_A 439 NLSNNQISKFP-----------KELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSD 505 (636)
T ss_dssp ECCSSCCCSCC-----------THHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCG
T ss_pred ECcCCccCcCC-----------HHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccCh
Confidence 99998644211 111234678999999998755 676654311 22399999999984 558888
Q ss_pred ccc--CccccccccccccccccCCCccccCCCccceecccCChhHHhh-cCCCCCCCCccccccceeeeccccc
Q 039007 285 SLK--DLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWER-CKPLTGEDWSKIARIPRIMLDDEMT 355 (360)
Q Consensus 285 ~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (360)
.+. .+++|++|++++|++.+ +|..+.++++|++|++++|+.+... .....+..+..+.+++.+++.++.+
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 886 99999999999999765 8988999999999999877533222 2333455666778888998888776
No 12
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=7.1e-29 Score=236.61 Aligned_cols=133 Identities=20% Similarity=0.119 Sum_probs=105.4
Q ss_pred cccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCC
Q 039007 5 DCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGN 84 (360)
Q Consensus 5 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (360)
-+..+|++++.|++.+|.+.. .....|.++++|++|++++|.+ ....+..|.++++|++|++++|.++.+|.. .
T Consensus 46 ip~~~~~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~ 119 (562)
T 3a79_B 46 VPKDLPPRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRI---RSLDFHVFLFNQDLEYLDVSHNRLQNISCC--P 119 (562)
T ss_dssp CCTTSCTTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCC---CEECTTTTTTCTTCCEEECTTSCCCEECSC--C
T ss_pred CCCCCCCCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCC---CcCCHHHhCCCCCCCEEECCCCcCCccCcc--c
Confidence 455678899999999999987 5567899999999999999987 455567799999999999999999988877 8
Q ss_pred CCCcCeEecccccccc-ccchhhhcCCccceEeeccccCcCcCCccccccccc--cEEEEecccc
Q 039007 85 LKHMRYLDLSRYCQIK-KLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSL--RMFVVTTKQK 146 (360)
Q Consensus 85 l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~L~l~~~~~ 146 (360)
+++|++|++++|...+ ..|..++++++|++|++++|..... .+..+++| +.|++++|.+
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 9999999999985443 2357899999999999998755432 23334444 6666666544
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.2e-28 Score=230.56 Aligned_cols=316 Identities=17% Similarity=0.159 Sum_probs=250.1
Q ss_pred eEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEe
Q 039007 14 RHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLD 92 (360)
Q Consensus 14 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~ 92 (360)
+.++..++.+.. ++..+ .+++++|++++|.+ ....+..|.++++|++|++++|.++.+ |..+..+++|++|+
T Consensus 14 ~~v~c~~~~l~~--ip~~~--~~~l~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 86 (477)
T 2id5_A 14 RAVLCHRKRFVA--VPEGI--PTETRLLDLGKNRI---KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86 (477)
T ss_dssp TEEECCSCCCSS--CCSCC--CTTCSEEECCSSCC---CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCc--CCCCC--CCCCcEEECCCCcc---ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence 456666666554 33333 35899999999997 445566799999999999999999855 77899999999999
Q ss_pred ccccccccccch-hhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccc-cccCCCCCCCcEeeccCCCch
Q 039007 93 LSRYCQIKKLPN-SICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLIISHCWNL 170 (360)
Q Consensus 93 l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~ 170 (360)
+++| .+..+|. .+.++++|++|++++|......|..+..+++|+.|++++|.+... +..+..+++|+.|++.+|...
T Consensus 87 L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 87 LRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 9988 4566664 578999999999999877766777899999999999999988765 467899999999999998665
Q ss_pred hhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCc
Q 039007 171 EYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGL 250 (360)
Q Consensus 171 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 250 (360)
...+..+..+++|+.|++++|......+..+..+++|+.|++++|....... .......+|+.|++++|
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----------~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT-----------PNCLYGLNLTSLSITHC 234 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC-----------TTTTTTCCCSEEEEESS
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC-----------cccccCccccEEECcCC
Confidence 5555678899999999999997766556678899999999999987655432 12233348999999998
Q ss_pred cCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChhHHhh
Q 039007 251 KQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWER 330 (360)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~ 330 (360)
... .++...+ ..+++|++|++++|......+..+.++++|+.|++++|.+....+..+..+++|++|++++|.-
T Consensus 235 ~l~-~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l---- 308 (477)
T 2id5_A 235 NLT-AVPYLAV-RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL---- 308 (477)
T ss_dssp CCC-SCCHHHH-TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC----
T ss_pred ccc-ccCHHHh-cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC----
Confidence 744 5654332 7899999999999965555566789999999999999998777788899999999999999932
Q ss_pred cCCCCCCCCccccccceeeeccccc
Q 039007 331 CKPLTGEDWSKIARIPRIMLDDEMT 355 (360)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (360)
.......+..+.+++.+++.+|.+
T Consensus 309 -~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 309 -TTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp -SCCCGGGBSCGGGCCEEECCSSCE
T ss_pred -ceeCHhHcCCCcccCEEEccCCCc
Confidence 222233345566788888877765
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.4e-28 Score=235.11 Aligned_cols=210 Identities=16% Similarity=0.143 Sum_probs=98.4
Q ss_pred cccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCc-ccCCCCCCCE
Q 039007 131 RYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPS-AVKCLSSSET 209 (360)
Q Consensus 131 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~ 209 (360)
+.+++|+.|++++|.+..+|..+..+++|++|++++|......+..+..+++|+.|++++|.....++. .+..+++|++
T Consensus 275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 344455555555555554445555555555555555544333344455555555555555544333332 2555566666
Q ss_pred EeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhh------------------------hcCCC
Q 039007 210 LILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWL------------------------LQGST 265 (360)
Q Consensus 210 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~------------------------~~~~~ 265 (360)
|++++|....... .......+++|+.|++++|......+..+ + ..+
T Consensus 355 L~l~~n~l~~~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~l 424 (606)
T 3t6q_A 355 LDLSHDDIETSDC---------CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF-QNL 424 (606)
T ss_dssp EECCSSCCCEEEE---------STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT-TTC
T ss_pred EECCCCccccccC---------cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh-hCc
Confidence 6666554332210 01223344455555555544332223333 1 344
Q ss_pred CCCcEEecccCCCcccccccccCccccccccccccccccC---CCccccCCCccceecccCChhHHhhcCCCCCCCCccc
Q 039007 266 KTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSS---LPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKI 342 (360)
Q Consensus 266 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 342 (360)
++|++|++++|......+..+.++++|++|++++|++.+. .+..+..+++|++|++++|.- .......+..+
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~~~~~~~~l 499 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-----SSIDQHAFTSL 499 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC-----CEECTTTTTTC
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc-----CccChhhhccc
Confidence 4455555554433333344444555555555555544331 123344455555555555521 11122334455
Q ss_pred cccceeeeccccc
Q 039007 343 ARIPRIMLDDEMT 355 (360)
Q Consensus 343 ~~l~~~~~~~~~~ 355 (360)
.+++.+++.++.+
T Consensus 500 ~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 500 KMMNHVDLSHNRL 512 (606)
T ss_dssp TTCCEEECCSSCC
T ss_pred cCCCEEECCCCcc
Confidence 6666677666554
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=3.5e-28 Score=217.99 Aligned_cols=303 Identities=17% Similarity=0.184 Sum_probs=235.7
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY 90 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 90 (360)
++++.|++.++.+.. .+.+..+++|++|++++|.+. .. +. +..+++|++|++++|.++.++ .+..+++|++
T Consensus 44 ~~L~~L~l~~~~i~~---~~~~~~~~~L~~L~l~~n~i~---~~-~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNGNQIT---DI-SP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp TTCSEEECCSSCCCC---CTTGGGCTTCCEEECCSSCCC---CC-GG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred ccccEEEEeCCcccc---chhhhhcCCccEEEccCCccc---cc-hh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 678999999988876 245889999999999999864 22 22 889999999999999988764 6889999999
Q ss_pred EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCch
Q 039007 91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL 170 (360)
Q Consensus 91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 170 (360)
|++++| .+..++. +..+++|+.|++++|.....++ .+..+++|+.|+++++.....+. +..+++|+.|++++|..
T Consensus 115 L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l- 189 (347)
T 4fmz_A 115 LYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI- 189 (347)
T ss_dssp EECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC-
T ss_pred EECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc-
Confidence 999988 5566666 8899999999999986666554 48899999999999998877643 78899999999999854
Q ss_pred hhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCc
Q 039007 171 EYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGL 250 (360)
Q Consensus 171 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 250 (360)
..++. +..+++|+.|++++|.... ++. +..+++|++|++++|...... ....+++|+.|++++|
T Consensus 190 ~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~~~~-------------~~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 190 EDISP-LASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKIGNNKITDLS-------------PLANLSQLTWLEIGTN 253 (347)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCG-------------GGTTCTTCCEEECCSS
T ss_pred ccccc-ccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEccCCccCCCc-------------chhcCCCCCEEECCCC
Confidence 33333 7789999999999985443 333 778899999999998644321 1556779999999998
Q ss_pred cCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChhHHhh
Q 039007 251 KQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWER 330 (360)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~ 330 (360)
... .++ .+ ..+++|++|++++| .++.++ .+..+++|++|++++|++....+..+..+++|++|++++|+- +..
T Consensus 254 ~l~-~~~-~~--~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~ 326 (347)
T 4fmz_A 254 QIS-DIN-AV--KDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-TDI 326 (347)
T ss_dssp CCC-CCG-GG--TTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC-CCC
T ss_pred ccC-CCh-hH--hcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc-ccc
Confidence 644 443 34 78899999999998 455554 478899999999999987777777788899999999999962 211
Q ss_pred cCCCCCCCCccccccceeeecccccc
Q 039007 331 CKPLTGEDWSKIARIPRIMLDDEMTK 356 (360)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (360)
..+..+.+++.+++.++.++
T Consensus 327 ------~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 327 ------RPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp ------GGGGGCTTCSEESSSCC---
T ss_pred ------cChhhhhccceeehhhhccc
Confidence 11555677888888887764
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3.5e-29 Score=232.72 Aligned_cols=317 Identities=15% Similarity=0.080 Sum_probs=224.6
Q ss_pred eEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-cc-CcCCCCCCCcCeE
Q 039007 14 RHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VL-PREIGNLKHMRYL 91 (360)
Q Consensus 14 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~-~~~~~~l~~L~~L 91 (360)
+.+...++++.. ++. + .++|++|++++|.+ ....+..+.++++|++|++++|.+. .+ +..+..+++|++|
T Consensus 13 ~~~~c~~~~l~~--lp~-l--~~~l~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L 84 (455)
T 3v47_A 13 YNAICINRGLHQ--VPE-L--PAHVNYVDLSLNSI---AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84 (455)
T ss_dssp TEEECCSSCCSS--CCC-C--CTTCCEEECCSSCC---CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred cccCcCCCCccc--CCC-C--CCccCEEEecCCcc---CcCChhHhccCccccEEECcCCcccceECcccccccccCCEE
Confidence 345555555555 222 2 27899999999987 4555677999999999999999986 55 4568999999999
Q ss_pred eccccccccccchhhhcCCccceEeeccccCcCcCCcc--ccccccccEEEEeccccccc-ccc-CCCCCCCcEeeccCC
Q 039007 92 DLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKD--IRYLVSLRMFVVTTKQKSLQ-ESG-IACLSSLRSLIISHC 167 (360)
Q Consensus 92 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~--~~~l~~L~~L~l~~~~~~~~-~~~-~~~l~~L~~L~l~~~ 167 (360)
++++|...+..|..+.++++|++|++++|...+.+|.. ++.+++|++|++++|.+... +.. +..+++|++|++++|
T Consensus 85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 99998655556788999999999999998766545544 88999999999999998876 443 789999999999998
Q ss_pred CchhhhHhhhcC----------------------------------CCCccEEEeccCCCCcccCcccCC---CC-----
Q 039007 168 WNLEYLFEHIGQ----------------------------------LSGLRSLILVDCPSLISLPSAVKC---LS----- 205 (360)
Q Consensus 168 ~~~~~~~~~l~~----------------------------------l~~L~~L~l~~~~~~~~~~~~~~~---~~----- 205 (360)
......+..+.. +++|+.|++++|......+..+.. .+
T Consensus 165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred cccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence 654443433332 345666666666443322222111 12
Q ss_pred -------------------------------CCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCC
Q 039007 206 -------------------------------SSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLL 254 (360)
Q Consensus 206 -------------------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 254 (360)
+|++|++++|.... ..+.....+++|+.|++++|....
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-----------LLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECTTSCCCE
T ss_pred eeccccccccccchhhhccCcccccccccccCceEEEecCccccc-----------cchhhcccCCCCCEEECCCCcccc
Confidence 33333333332211 123335566788888888887655
Q ss_pred CchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChhHHhhcCCC
Q 039007 255 DLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALWERCKPL 334 (360)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~ 334 (360)
..+..+ ..+++|++|++++|...+..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.- ...
T Consensus 314 ~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-----~~~ 386 (455)
T 3v47_A 314 IDDNAF--WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-----KSV 386 (455)
T ss_dssp ECTTTT--TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-----SCC
T ss_pred cChhHh--cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc-----ccC
Confidence 445555 6788899999998855445567788889999999999987666677888889999999988842 222
Q ss_pred CCCCCccccccceeeecccccc
Q 039007 335 TGEDWSKIARIPRIMLDDEMTK 356 (360)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~~~~~ 356 (360)
....+..+.+++.+++.++.+.
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC
T ss_pred CHhHhccCCcccEEEccCCCcc
Confidence 2333456677888888877653
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=3.8e-28 Score=236.85 Aligned_cols=162 Identities=17% Similarity=0.123 Sum_probs=133.1
Q ss_pred ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CC
Q 039007 4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EI 82 (360)
Q Consensus 4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~ 82 (360)
.-+..+|++++.|++.++.+.. .....|.++++|++|++++|.+ ....+..+.++++|++|++++|.++.+|. .+
T Consensus 18 ~ip~~~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 18 QVPDDLPTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTI---SKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp SCCSCSCTTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCC---CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccccccCCCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCcc---CccCHHHHhcccCcCEEECCCCccCccChhhh
Confidence 3456688999999999999988 5666799999999999999987 45556779999999999999999998876 58
Q ss_pred CCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccc-c--CCCCCCC
Q 039007 83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQES-G--IACLSSL 159 (360)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~--~~~l~~L 159 (360)
..+++|++|++++|...+..|..++++++|++|++++|...+..|..++.+++|++|++++|.+...+. . ...+++|
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 999999999999985443334678999999999999987777677778899999999999988765532 2 2345778
Q ss_pred cEeeccCCCc
Q 039007 160 RSLIISHCWN 169 (360)
Q Consensus 160 ~~L~l~~~~~ 169 (360)
+.|++++|..
T Consensus 174 ~~L~L~~n~l 183 (680)
T 1ziw_A 174 KKLELSSNQI 183 (680)
T ss_dssp SEEECTTCCC
T ss_pred cEEECCCCcc
Confidence 8888887743
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3.1e-28 Score=239.71 Aligned_cols=323 Identities=13% Similarity=0.098 Sum_probs=248.2
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccC-CCCccc-chHHHhhcC-------CCccEEEEeCCCCcccCc-
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSIND-ENTSES-FFTSCISKS-------QFLRVLDLDDSTIEVLPR- 80 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~~l-------~~L~~L~l~~~~~~~~~~- 80 (360)
++++.|++.+|.+.+ .++..+.++++|+.|++++|. + .. .+|..+.++ ++|++|++++|.++.+|.
T Consensus 491 ~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~Ls~N~~l---sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 491 KDLTDVELYNCPNMT-QLPDFLYDLPELQSLNIACNRGI---SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp TTCCEEEEESCTTCC-SCCGGGGGCSSCCEEECTTCTTS---CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred CCCCEEECcCCCCCc-cChHHHhCCCCCCEEECcCCCCc---ccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 679999999999877 677889999999999999997 5 33 455555554 499999999999999998
Q ss_pred -CCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcccccccc-ccEEEEeccccccccccCCCCCC
Q 039007 81 -EIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVS-LRMFVVTTKQKSLQESGIACLSS 158 (360)
Q Consensus 81 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~l~~~~~~~~~~~~~~l~~ 158 (360)
.+..+++|++|++++|. +..+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+..+|..+..++.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~ 643 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643 (876)
T ss_dssp HHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCS
T ss_pred hhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhcccc
Confidence 89999999999999985 45888 7899999999999998655 89989999999 99999999999888877776654
Q ss_pred --CcEeeccCCCchhhhHh---hhc--CCCCccEEEeccCCCCcccCccc-CCCCCCCEEeecCCcCccccccccccCCC
Q 039007 159 --LRSLIISHCWNLEYLFE---HIG--QLSGLRSLILVDCPSLISLPSAV-KCLSSSETLILIDCKSLNLNLNIEMEGEG 230 (360)
Q Consensus 159 --L~~L~l~~~~~~~~~~~---~l~--~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 230 (360)
|+.|++++|.....+|. .+. .+++|+.|++++|... .+|..+ ..+++|+.|++++|....... ..+.+.
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~-~~~~~~- 720 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPE-NSLKPK- 720 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCT-TSSSCT-
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccCh-HHhccc-
Confidence 99999999866543332 222 3458999999998655 677655 478999999999986442111 100000
Q ss_pred CCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccc------ccccc
Q 039007 231 SHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISA------CRKLS 304 (360)
Q Consensus 231 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~------~~~~~ 304 (360)
......+++|+.|+|++|... .+|..+....+++|+.|+|++|. +..+|..+..+++|+.|++++ |.+.+
T Consensus 721 --~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 721 --DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp --TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred --cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccc
Confidence 001223458999999998644 78877622388999999999984 555888888999999999976 66667
Q ss_pred CCCccccCCCccceecccCChhHHhhcCCCCCCCCccccccceeeeccccc
Q 039007 305 SLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMT 355 (360)
Q Consensus 305 ~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (360)
.+|..+.++++|++|++++|.- . . .+..+. .+++.+++.++.+
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~L-~-~----Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSNDI-R-K----VDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-C-B----CCSCCC--SSSCEEECCSCTT
T ss_pred cChHHHhcCCCCCEEECCCCCC-C-c----cCHhhc--CCCCEEECCCCCC
Confidence 7888888999999999999964 2 1 122222 3677888877664
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=6.2e-28 Score=240.26 Aligned_cols=301 Identities=16% Similarity=0.054 Sum_probs=217.1
Q ss_pred CCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcc-cCcCCCCCCC
Q 039007 9 IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEV-LPREIGNLKH 87 (360)
Q Consensus 9 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~ 87 (360)
+|++++.|++.+|.+.. .....|.++++|++|++++|... ....+..|.++++|++|++++|.+.. .|..+..+++
T Consensus 22 lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~--~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTP--LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCC--CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCc--cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 88999999999999987 66678999999999999999542 33336779999999999999999984 4788999999
Q ss_pred cCeEeccccccccccchh--hhcCCccceEeeccccCcCcCC-ccccccccccEEEEeccccccc-cccCCCC--CCCcE
Q 039007 88 MRYLDLSRYCQIKKLPNS--ICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTKQKSLQ-ESGIACL--SSLRS 161 (360)
Q Consensus 88 L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l--~~L~~ 161 (360)
|++|++++|...+..|.. +.++++|++|++++|...+..+ ..++.+++|+.|++++|.+... +..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 999999998665555554 8899999999999987665444 5789999999999999987654 4555555 78999
Q ss_pred eeccCCCchhhhHhhhcCCCC------ccEEEeccCCCCcccCcccCC--------------------------------
Q 039007 162 LIISHCWNLEYLFEHIGQLSG------LRSLILVDCPSLISLPSAVKC-------------------------------- 203 (360)
Q Consensus 162 L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~~-------------------------------- 203 (360)
|+++.|......+..++.+++ |+.|++++|......+..+..
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 999988665555555555554 899999988544433332221
Q ss_pred ------CCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCC
Q 039007 204 ------LSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCP 277 (360)
Q Consensus 204 ------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 277 (360)
.++|+.|++++|..... ....+..+++|+.|+|++|......+..+ ..+++|++|++++|.
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSL-----------NSRVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNL 325 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEE-----------CSCCSSSCCCCCEEEEESCCCCEECTTTT--TTCSSCCEEEEESCC
T ss_pred hhhccccCCccEEECCCCccccc-----------ChhhhhcCCCCCEEECCCCcCCCCChHHh--cCCCCCCEEECCCCC
Confidence 14455555555432211 12334456677777777776544444444 667777777777775
Q ss_pred CcccccccccCccccccccccccccccCCCccccCCCccceecccCCh
Q 039007 278 NFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP 325 (360)
Q Consensus 278 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 325 (360)
.....+..+.++++|+.|++++|.+....+..+..+++|++|++++|.
T Consensus 326 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 444456667777777777777776544444556667777777777774
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=7.2e-28 Score=219.39 Aligned_cols=282 Identities=14% Similarity=0.077 Sum_probs=166.2
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcC
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMR 89 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~ 89 (360)
++++.|++.++.+.. .....+..+++|++|++++|.+ ....+..|..+++|++|++++|.+..++ ..+..+++|+
T Consensus 45 ~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEecCCchhh-CChhHhcccccCcEEECCCCcc---cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 667888888887766 4455678888899999988876 3444456888888999999888888554 4578888899
Q ss_pred eEeccccccccccchh-hhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCC
Q 039007 90 YLDLSRYCQIKKLPNS-ICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCW 168 (360)
Q Consensus 90 ~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 168 (360)
+|++++| .+..+|.. +..+++|++|++++|...+..|..+..+++|+.|++++|.+... .+..+++|+.|++++|.
T Consensus 121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSC
T ss_pred EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccc
Confidence 9999887 45566654 57888899999888765555556678888888888888877655 24556667777766653
Q ss_pred chhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEec
Q 039007 169 NLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVS 248 (360)
Q Consensus 169 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 248 (360)
... +...+.|+.|++++|.. ..++.. ..++|++|++++|..... .....+++|+.|+++
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l-~~~~~~--~~~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~Ls 256 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSI-NVVRGP--VNVELTILKLQHNNLTDT-------------AWLLNYPGLVEVDLS 256 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCC-CEEECC--CCSSCCEEECCSSCCCCC-------------GGGGGCTTCSEEECC
T ss_pred ccc-----cCCCCcceEEECCCCee-eecccc--ccccccEEECCCCCCccc-------------HHHcCCCCccEEECC
Confidence 221 12234455555555432 222221 134455555554432211 112233444555554
Q ss_pred CccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCC
Q 039007 249 GLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKEC 324 (360)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 324 (360)
+|......+..+ ..+++|++|++++| .++.++..+..+++|++|++++|++ +.+|..+..+++|++|++++|
T Consensus 257 ~n~l~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 257 YNELEKIMYHPF--VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp SSCCCEEESGGG--TTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSS
T ss_pred CCcCCCcChhHc--cccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcc-eecCccccccCcCCEEECCCC
Confidence 444333323333 44444555555444 2333343344444455555544432 233333444444444444444
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=8.7e-28 Score=215.43 Aligned_cols=280 Identities=18% Similarity=0.179 Sum_probs=229.3
Q ss_pred CCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcC
Q 039007 10 PKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMR 89 (360)
Q Consensus 10 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 89 (360)
.++++.|++.++.+.. +.+ +.++++|++|++++|.+.. ++ .+.++++|++|++++|.+..++. +..+++|+
T Consensus 65 ~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~----~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~ 135 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD----IS-ALQNLTNLRELYLNEDNISDISP-LANLTKMY 135 (347)
T ss_dssp CTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC----CG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCC
T ss_pred cCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC----ch-HHcCCCcCCEEECcCCcccCchh-hccCCcee
Confidence 4689999999998877 232 9999999999999998742 22 48899999999999999987765 88999999
Q ss_pred eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007 90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN 169 (360)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (360)
+|++++|......+. +..+++|+.|++++|... .++. +..+++|+.|++++|.+...+. +..+++|+.+++.+|..
T Consensus 136 ~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 136 SLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQI 211 (347)
T ss_dssp EEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred EEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCC
Confidence 999999976666655 899999999999997544 4443 8899999999999999887754 88899999999999854
Q ss_pred hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecC
Q 039007 170 LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSG 249 (360)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 249 (360)
... +. +..+++|++|++++|... .++. +..+++|++|++++|..... .....+++|+.|++++
T Consensus 212 ~~~-~~-~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 212 TDI-TP-VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDI-------------NAVKDLTKLKMLNVGS 274 (347)
T ss_dssp CCC-GG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCC-------------GGGTTCTTCCEEECCS
T ss_pred CCC-ch-hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccCCC-------------hhHhcCCCcCEEEccC
Confidence 443 22 778999999999998543 4444 78899999999999864431 2245678999999999
Q ss_pred ccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCCh
Q 039007 250 LKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP 325 (360)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 325 (360)
|.. ..++ .+ ..+++|++|++++|......+..+.++++|++|++++|++.+..| +..+++|++|++++|+
T Consensus 275 n~l-~~~~-~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 275 NQI-SDIS-VL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp SCC-CCCG-GG--GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred Ccc-CCCh-hh--cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence 864 4454 33 688999999999997666777889999999999999999665444 7789999999999996
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=3e-28 Score=215.07 Aligned_cols=250 Identities=18% Similarity=0.177 Sum_probs=151.0
Q ss_pred ccccEEEEeccCCCCccc--chHHHhhcCCCccEEEEeC-CCCc-ccCcCCCCCCCcCeEeccccccccccchhhhcCCc
Q 039007 36 RRVRTILFSINDENTSES--FFTSCISKSQFLRVLDLDD-STIE-VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQS 111 (360)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 111 (360)
.++++|+++++.+. + .++..+.++++|++|++++ +.+. .+|..+..+++|++|++++|...+.+|..+.++++
T Consensus 50 ~~l~~L~L~~~~l~---~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLP---KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCS---SCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCcc---CCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 35666666666542 2 3344566666666666663 5554 55555666666666666665444455555666666
Q ss_pred cceEeeccccCcCcCCccccccccccEEEEeccccc-cccccCCCCC-CCcEeeccCCCchhhhHhhhcCCCCccEEEec
Q 039007 112 LQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKS-LQESGIACLS-SLRSLIISHCWNLEYLFEHIGQLSGLRSLILV 189 (360)
Q Consensus 112 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 189 (360)
|++|++++|.+.+.+|..+..+++|++|++++|.+. ..+..+..++ +|+.|++++|......|..+..++ |+.|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 666666665555555655666666666666666555 3344555555 566666665544444445555554 6666665
Q ss_pred cCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCc
Q 039007 190 DCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQ 269 (360)
Q Consensus 190 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~ 269 (360)
+|......+..+..+++|+.|++++ |.....++. + ..+++|+
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~-----------------------------------N~l~~~~~~-~--~~l~~L~ 247 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAK-----------------------------------NSLAFDLGK-V--GLSKNLN 247 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCS-----------------------------------SEECCBGGG-C--CCCTTCC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCC-----------------------------------CceeeecCc-c--cccCCCC
Confidence 5544444444455555555555554 433333333 3 5667888
Q ss_pred EEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChhHH
Q 039007 270 FLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPALW 328 (360)
Q Consensus 270 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 328 (360)
+|++++|...+.+|..+..+++|++|++++|++.+.+|.. ..+++|+.+++.+|+.+.
T Consensus 248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred EEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 8888887655577777888888888888888877677765 677888888888887543
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.3e-27 Score=227.46 Aligned_cols=314 Identities=18% Similarity=0.141 Sum_probs=216.4
Q ss_pred cccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CC
Q 039007 5 DCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IG 83 (360)
Q Consensus 5 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~ 83 (360)
-+..++++++.|++.++.+.. ..+..|.++++|++|++++|.+ ....+..|.++++|++|++++|.+..+++. +.
T Consensus 20 ip~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 20 IPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRI---NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp CCSCCCTTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred ccccCCCCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCc---CccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 355677899999999999887 5567899999999999999987 455567799999999999999999977665 89
Q ss_pred CCCCcCeEecccccccc-ccchhhhcCCccceEeeccccCcCcCC-ccccccccccEEEEecccccc-ccccCCCCCCCc
Q 039007 84 NLKHMRYLDLSRYCQIK-KLPNSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTKQKSL-QESGIACLSSLR 160 (360)
Q Consensus 84 ~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~ 160 (360)
.+++|++|++++|...+ ..|..++++++|++|++++|...+.+| ..+..+++|++|++++|.+.. .+..+..+++|+
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 99999999999985443 346678999999999999987666666 578999999999999998876 467888999999
Q ss_pred EeeccCCCchhhhHhh-hcCCCCccEEEeccCCCCccc--C-cccCCCCCCCEEeecC----------------------
Q 039007 161 SLIISHCWNLEYLFEH-IGQLSGLRSLILVDCPSLISL--P-SAVKCLSSSETLILID---------------------- 214 (360)
Q Consensus 161 ~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~--~-~~~~~~~~L~~L~l~~---------------------- 214 (360)
.|++..|.. ..++.. +..+++|+.|++++|...+.. + .....+++|+.|++.+
T Consensus 176 ~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 176 HLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred eEecccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 999988754 333333 456889999999887643310 1 1122234444444433
Q ss_pred ------CcCccccccc---------------------------------------------ccc--CCCCCCCCC-CCCC
Q 039007 215 ------CKSLNLNLNI---------------------------------------------EME--GEGSHHDRD-NTRT 240 (360)
Q Consensus 215 ------~~~~~~~~~~---------------------------------------------~~~--~~~~~~~~~-~~~~ 240 (360)
|......... .+. .....+... ..++
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~ 334 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCT
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCc
Confidence 3211100000 000 000000000 2355
Q ss_pred ccceEEecCccCCCCchhhh-hcCCCCCCcEEecccCCCccccc---ccccCccccccccccccccccCCCccccCCCcc
Q 039007 241 HLQKLFVSGLKQLLDLPQWL-LQGSTKTLQFLGIEDCPNFMALQ---GSLKDLEALETLLISACRKLSSLPEDIHHLTTL 316 (360)
Q Consensus 241 ~L~~L~L~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 316 (360)
+|+.|++++|...+.++... ....+++|++|++++|. ++.++ ..+..+++|++|++++|++. .+|..+..+++|
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L 412 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc
Confidence 67777777776554443221 01566777888887773 33332 34677788888888887644 667777777778
Q ss_pred ceecccCCh
Q 039007 317 KTLSIKECP 325 (360)
Q Consensus 317 ~~L~l~~c~ 325 (360)
++|++++|.
T Consensus 413 ~~L~Ls~N~ 421 (549)
T 2z81_A 413 RFLNLSSTG 421 (549)
T ss_dssp CEEECTTSC
T ss_pred cEEECCCCC
Confidence 888887774
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=3.2e-27 Score=226.55 Aligned_cols=282 Identities=15% Similarity=0.089 Sum_probs=166.0
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcC
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMR 89 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~ 89 (360)
.+++.+++.++.+.. .....+..+++|++|++++|.+ ....+..|..+++|++|++++|.+..+|+ .++.+++|+
T Consensus 51 ~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 51 NNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp CCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCC---CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 456778888777766 5555678888888888888876 44455568888888888888888885544 468888888
Q ss_pred eEeccccccccccchh-hhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCC
Q 039007 90 YLDLSRYCQIKKLPNS-ICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCW 168 (360)
Q Consensus 90 ~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 168 (360)
+|++++| .+..+|.. ++.+++|+.|++++|.+.+..|..++.+++|+.|++++|.+...+ +..+++|+.|++++|.
T Consensus 127 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred EEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCc
Confidence 8888887 45566544 578888888888887666656667888888888888888776652 4556677777776653
Q ss_pred chhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEec
Q 039007 169 NLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVS 248 (360)
Q Consensus 169 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 248 (360)
... +...+.|+.|++++|.. ..++... .++|+.|++++|..... .....+++|+.|+|+
T Consensus 204 l~~-----l~~~~~L~~L~ls~n~l-~~~~~~~--~~~L~~L~L~~n~l~~~-------------~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 204 LST-----LAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTDT-------------AWLLNYPGLVEVDLS 262 (597)
T ss_dssp CSE-----EECCTTCSEEECCSSCC-CEEECSC--CSCCCEEECCSSCCCCC-------------GGGGGCTTCSEEECC
T ss_pred ccc-----ccCCchhheeeccCCcc-ccccccc--CCCCCEEECCCCCCCCC-------------hhhccCCCCCEEECC
Confidence 221 22334555555555432 2222111 23445555544432210 112233444455554
Q ss_pred CccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCC
Q 039007 249 GLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKEC 324 (360)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 324 (360)
+|......|..+ ..+++|++|+|++| .+..+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|
T Consensus 263 ~N~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 263 YNELEKIMYHPF--VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp SSCCCEEESGGG--TTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred CCccCCCCHHHh--cCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC
Confidence 444333333333 44444555555444 23333444444444445554444422 33433444444444444444
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=9.9e-28 Score=228.18 Aligned_cols=131 Identities=13% Similarity=0.135 Sum_probs=107.5
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc--ccCcCCCCCCCc
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE--VLPREIGNLKHM 88 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L 88 (360)
++++.|++.++.+.. ..+..|.++++|++|++++|.+ ....+..+.++++|++|++++|.++ ..|..+..+++|
T Consensus 50 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 50 ANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHL---SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCC---CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred CcccEEECCCCCcCc-cChhhccccccCCEEECCCCcc---CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 679999999999987 5667899999999999999987 4556677999999999999999988 456789999999
Q ss_pred CeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc
Q 039007 89 RYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ 145 (360)
Q Consensus 89 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 145 (360)
++|++++|...+.+| ..+..+++|++|++++|...+..|..++.+++|+.|+++.+.
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999999986577776 568899999999999987776677666655555555544443
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=7.7e-27 Score=220.60 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=81.1
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcc--cCcCCCCCCCc
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEV--LPREIGNLKHM 88 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L 88 (360)
++++.|++.+|.+.. ..+..|.++++|++|++++|.+. .++.. .+++|++|++++|.++. +|..++.+++|
T Consensus 45 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~----~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L 117 (520)
T 2z7x_B 45 SKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKLV----KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQL 117 (520)
T ss_dssp TTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECCSSCCC----EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred ccccEEecCCCccCC-cChHHhhcccCCCEEecCCCcee----ecCcc--ccCCccEEeccCCccccccchhhhccCCcc
Confidence 689999999999987 55678999999999999999874 23332 78999999999999884 67889999999
Q ss_pred CeEeccccccccccchhhhcCCcc--ceEeeccccC
Q 039007 89 RYLDLSRYCQIKKLPNSICELQSL--QTLILRGCLK 122 (360)
Q Consensus 89 ~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 122 (360)
++|++++|.... ..+..+++| +.|++++|..
T Consensus 118 ~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 118 KFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred eEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 999999885432 235556666 7777777655
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.4e-26 Score=206.18 Aligned_cols=286 Identities=14% Similarity=0.101 Sum_probs=193.7
Q ss_pred cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCe
Q 039007 12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRY 90 (360)
Q Consensus 12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~ 90 (360)
+++.+++.++.+.. ++..+ .+++++|++++|.+ ....+..+.++++|++|++++|.++.+ |..+..+++|++
T Consensus 32 ~l~~l~~~~~~l~~--lp~~~--~~~l~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKDL--PPDTALLDLQNNKI---TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCCS--CCCSC--CTTCCEEECCSSCC---CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCeEEEecCCCccc--cCccC--CCCCeEEECCCCcC---CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 57777777766654 22222 25788888888876 334444578888888888888888855 677888888888
Q ss_pred EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccc---ccccCCCCCCCcEeeccCC
Q 039007 91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSL---QESGIACLSSLRSLIISHC 167 (360)
Q Consensus 91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~ 167 (360)
|++++| .++.+|..+. ++|++|++++|......+..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|
T Consensus 105 L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 105 LYLSKN-QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp EECCSS-CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred EECCCC-cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 888877 4556665443 788888888875554444557788888888888887753 3456777888888888887
Q ss_pred CchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEe
Q 039007 168 WNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFV 247 (360)
Q Consensus 168 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 247 (360)
. ++.+|..+ .++|++|++++|......+..+..+++|++|++++|...... ......+++|+.|++
T Consensus 182 ~-l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 182 N-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-----------NGSLANTPHLRELHL 247 (330)
T ss_dssp C-CCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-----------TTTGGGSTTCCEEEC
T ss_pred c-cccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-----------hhhccCCCCCCEEEC
Confidence 4 33444433 278888888888665555677888888888888887543221 112345567788888
Q ss_pred cCccCCCCchhhhhcCCCCCCcEEecccCCCccccccccc------Ccccccccccccccccc--CCCccccCCCcccee
Q 039007 248 SGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLK------DLEALETLLISACRKLS--SLPEDIHHLTTLKTL 319 (360)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~------~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L 319 (360)
++|. +..+|..+ ..+++|++|++++|......+..+. ..+.|+.+++.+|++.. ..|..+..+++++.+
T Consensus 248 ~~N~-l~~lp~~l--~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l 324 (330)
T 1xku_A 248 NNNK-LVKVPGGL--ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324 (330)
T ss_dssp CSSC-CSSCCTTT--TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred CCCc-CccCChhh--ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEE
Confidence 7775 34666666 6778888888888743332222332 23677788888887543 334556667778888
Q ss_pred cccCC
Q 039007 320 SIKEC 324 (360)
Q Consensus 320 ~l~~c 324 (360)
++++|
T Consensus 325 ~L~~N 329 (330)
T 1xku_A 325 QLGNY 329 (330)
T ss_dssp EC---
T ss_pred Eeccc
Confidence 87776
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=227.48 Aligned_cols=308 Identities=17% Similarity=0.124 Sum_probs=202.6
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcC
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMR 89 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~ 89 (360)
++++.|++.++.+.. .....|.++++|++|++++|.+ ....+..|.++++|++|++++|.++.++. .++.+++|+
T Consensus 52 ~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 52 PELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPI---QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp SSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred CCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcC---CccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 568888888887766 4456677888888888888775 33444557777777777777777765544 466777777
Q ss_pred eEecccccccc-ccchhhhcCCccceEeeccccCcCc-------------------------------------------
Q 039007 90 YLDLSRYCQIK-KLPNSICELQSLQTLILRGCLKLEE------------------------------------------- 125 (360)
Q Consensus 90 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~------------------------------------------- 125 (360)
+|++++|.... .+|..++++++|++|++++|...+.
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l 207 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEec
Confidence 77777664333 3566666777777777665532211
Q ss_pred ------------------------------------------------------------------CCccccccccccEE
Q 039007 126 ------------------------------------------------------------------LPKDIRYLVSLRMF 139 (360)
Q Consensus 126 ------------------------------------------------------------------~p~~~~~l~~L~~L 139 (360)
.|..+..+++|+.|
T Consensus 208 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L 287 (570)
T 2z63_A 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287 (570)
T ss_dssp ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEE
T ss_pred ccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEE
Confidence 01112234555556
Q ss_pred EEeccccccccccC------------------------------------------CCCCCCcEeeccCCCchhh--hHh
Q 039007 140 VVTTKQKSLQESGI------------------------------------------ACLSSLRSLIISHCWNLEY--LFE 175 (360)
Q Consensus 140 ~l~~~~~~~~~~~~------------------------------------------~~l~~L~~L~l~~~~~~~~--~~~ 175 (360)
+++++.+...+..+ ..+++|+.|++++|..... .+.
T Consensus 288 ~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 367 (570)
T 2z63_A 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367 (570)
T ss_dssp EEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEH
T ss_pred EecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccc
Confidence 65555444332221 3456777777777644322 245
Q ss_pred hhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccc--------------cCCCCCCCCCCCCCc
Q 039007 176 HIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEM--------------EGEGSHHDRDNTRTH 241 (360)
Q Consensus 176 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 241 (360)
.+..+++|+.|++++|... .++..+..+++|++|++++|..........+ .-....+.....+++
T Consensus 368 ~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp HHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred cccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence 6677788888888877433 3333355666666666666543222110000 001113344567789
Q ss_pred cceEEecCccCC-CCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceec
Q 039007 242 LQKLFVSGLKQL-LDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLS 320 (360)
Q Consensus 242 L~~L~L~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 320 (360)
|+.|++++|... ..+|..+ ..+++|++|++++|...+..|..+..+++|++|++++|++.+..+..+..+++|++|+
T Consensus 447 L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp CCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcEEECcCCcCccccchhhh--hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence 999999999865 3566666 7899999999999966666688899999999999999987766667788999999999
Q ss_pred ccCCh
Q 039007 321 IKECP 325 (360)
Q Consensus 321 l~~c~ 325 (360)
+++|+
T Consensus 525 l~~N~ 529 (570)
T 2z63_A 525 LHTNP 529 (570)
T ss_dssp CCSSC
T ss_pred ecCCc
Confidence 99986
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=2.2e-26 Score=224.36 Aligned_cols=105 Identities=18% Similarity=0.174 Sum_probs=51.4
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcC
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMR 89 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~ 89 (360)
++++.|++.++.+.. ..+..+.++++|++|++++|.+. ...+..|.++++|++|++++|.+..++ ..+..+++|+
T Consensus 49 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 49 SQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELS---QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp TTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred CcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccC---ccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 356666666665555 34445556666666666665542 222233555555555555555555333 3345555555
Q ss_pred eEeccccccccccchhhhcCCccceEeecc
Q 039007 90 YLDLSRYCQIKKLPNSICELQSLQTLILRG 119 (360)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 119 (360)
+|++++|...+..+..+.++++|++|++++
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred EEECCCCcccccCchhhcccccCCEEEccC
Confidence 555554433222233333444444444433
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=5.5e-27 Score=208.89 Aligned_cols=286 Identities=14% Similarity=0.052 Sum_probs=212.2
Q ss_pred cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCe
Q 039007 12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRY 90 (360)
Q Consensus 12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~ 90 (360)
+++.+++.++.+.. ++..+ .++|++|++++|.+ ....+..+.++++|++|++++|.++.+ |..+..+++|++
T Consensus 34 ~l~~l~~~~~~l~~--ip~~~--~~~l~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA--VPKEI--SPDTTLLDLQNNDI---SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCSS--CCSCC--CTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCCccc--cCCCC--CCCCeEEECCCCcC---CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 58888888887765 33333 36899999999987 444556789999999999999999855 677999999999
Q ss_pred EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccc---ccccCCCCCCCcEeeccCC
Q 039007 91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSL---QESGIACLSSLRSLIISHC 167 (360)
Q Consensus 91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~ 167 (360)
|++++| .+..+|..+. ++|++|++++|......+..+..+++|+.|++++|.+.. .+..+..+ +|+.|++++|
T Consensus 107 L~L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 107 LYISKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp EECCSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred EECCCC-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 999988 5667776554 899999999985554333458899999999999998863 34566666 8999999997
Q ss_pred CchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEe
Q 039007 168 WNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFV 247 (360)
Q Consensus 168 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 247 (360)
. ++.+|..+. ++|++|++++|......+..+..+++|++|++++|...... ......+++|+.|++
T Consensus 183 ~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 183 K-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-----------NGSLSFLPTLRELHL 248 (332)
T ss_dssp B-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-----------TTGGGGCTTCCEEEC
T ss_pred C-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-----------hhHhhCCCCCCEEEC
Confidence 5 344554433 79999999999766655677889999999999988543321 122445678899999
Q ss_pred cCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccC------ccccccccccccccc--cCCCccccCCCcccee
Q 039007 248 SGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKD------LEALETLLISACRKL--SSLPEDIHHLTTLKTL 319 (360)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~------l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L 319 (360)
++|. +..+|..+ ..+++|++|++++|......+..+.. .+.|+.|++.+|+.. ...+..+..+++|+.+
T Consensus 249 ~~N~-l~~lp~~l--~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 249 DNNK-LSRVPAGL--PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp CSSC-CCBCCTTG--GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred CCCc-CeecChhh--hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence 8886 44777766 67888999999988543333333433 467888999998865 3456667788889999
Q ss_pred cccCCh
Q 039007 320 SIKECP 325 (360)
Q Consensus 320 ~l~~c~ 325 (360)
++++|+
T Consensus 326 ~l~~n~ 331 (332)
T 2ft3_A 326 QFGNYK 331 (332)
T ss_dssp EC----
T ss_pred hccccc
Confidence 888875
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=3e-27 Score=208.65 Aligned_cols=252 Identities=17% Similarity=0.148 Sum_probs=209.5
Q ss_pred CcceEEEeeecccccc-chhhhhccCccccEEEEec-cCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcCCCCCCC
Q 039007 11 KRVRHLSFVSASASRN-DFSSLLSDLRRVRTILFSI-NDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPREIGNLKH 87 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~ 87 (360)
.+|+.|++.++.+.+. .++..+.++++|++|++++ |.+ .+.++..+.++++|++|++++|.++ .+|..+..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL---VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE---ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc---cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 6899999999998752 3567899999999999995 776 4456777999999999999999998 88889999999
Q ss_pred cCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccc-cccEEEEeccccc-cccccCCCCCCCcEeecc
Q 039007 88 MRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLV-SLRMFVVTTKQKS-LQESGIACLSSLRSLIIS 165 (360)
Q Consensus 88 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~ 165 (360)
|++|++++|...+.+|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+. ..+..+..++ |+.|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999999966668898899999999999999977778999999998 9999999999987 4567778787 9999999
Q ss_pred CCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceE
Q 039007 166 HCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKL 245 (360)
Q Consensus 166 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 245 (360)
+|......+..+..+++|+.|++++|......+. +..+++|++|++++
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~------------------------------- 253 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRN------------------------------- 253 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCS-------------------------------
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcC-------------------------------
Confidence 9977667888899999999999999865444333 45555555555554
Q ss_pred EecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccC
Q 039007 246 FVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSS 305 (360)
Q Consensus 246 ~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 305 (360)
|...+.+|..+ ..+++|++|++++|...+.+|.. ..+++|+.+++.+|+.+..
T Consensus 254 ----N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 254 ----NRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ----SCCEECCCGGG--GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred ----CcccCcCChHH--hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 44444566666 77899999999999666677775 8899999999999986654
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=8.4e-27 Score=224.37 Aligned_cols=290 Identities=16% Similarity=0.061 Sum_probs=236.6
Q ss_pred ceEEEe-eeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeE
Q 039007 13 VRHLSF-VSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYL 91 (360)
Q Consensus 13 l~~L~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 91 (360)
++.+.+ ..+.+.+ .++. +..+++|++|+++++.+.. ++ .+..+++|++|++++|.+..+| .+ .+++|++|
T Consensus 263 l~~l~l~~~~~~~~-~~~~-~~~l~~L~~L~l~~~~~~~----l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L 333 (606)
T 3vq2_A 263 IDEFRLTYTNDFSD-DIVK-FHCLANVSAMSLAGVSIKY----LE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSL 333 (606)
T ss_dssp EEEEEECCCTTCCG-GGGS-CGGGTTCSEEEEESCCCCC----CC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEE
T ss_pred Hhheeccccccccc-cccc-cccCCCCCEEEecCccchh----hh-hccccccCCEEEcccccCcccc-cC-CCCcccee
Confidence 444555 3344444 3333 8899999999999998642 22 5788999999999999998888 55 99999999
Q ss_pred eccccccccccchhhhcCCccceEeeccccCcCc--CCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007 92 DLSRYCQIKKLPNSICELQSLQTLILRGCLKLEE--LPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN 169 (360)
Q Consensus 92 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (360)
++++|...... .+..+++|+.|++++|...+. +|..+..+++|+.|++++|.+...+..+..+++|+.|++++|..
T Consensus 334 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l 411 (606)
T 3vq2_A 334 TLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTL 411 (606)
T ss_dssp EEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEE
T ss_pred eccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCcc
Confidence 99998555544 467899999999999865543 47788899999999999999888888899999999999999866
Q ss_pred hhhhH-hhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEec
Q 039007 170 LEYLF-EHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVS 248 (360)
Q Consensus 170 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 248 (360)
.+..+ ..+..+++|+.|++++|......|..+..+++|++|++++|...... .+.....+++|+.|+++
T Consensus 412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~l~~L~~L~Ls 481 (606)
T 3vq2_A 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT----------LSNVFANTTNLTFLDLS 481 (606)
T ss_dssp ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE----------ECSCCTTCTTCCEEECT
T ss_pred CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc----------hHHhhccCCCCCEEECC
Confidence 65555 57889999999999999887778888999999999999998654311 13345677899999999
Q ss_pred CccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCC-ccceecccCChh
Q 039007 249 GLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLT-TLKTLSIKECPA 326 (360)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~ 326 (360)
+|......+..+ ..+++|++|++++|...+..|..+.++++|++|++++|++. .+|..+..++ +|++|++++||-
T Consensus 482 ~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 482 KCQLEQISWGVF--DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TSCCCEECTTTT--TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred CCcCCccChhhh--cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence 998766656666 78999999999999766677889999999999999999854 7777788887 599999999864
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.8e-26 Score=223.07 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=112.8
Q ss_pred ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CC
Q 039007 4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EI 82 (360)
Q Consensus 4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~ 82 (360)
.-|.++|+.++.|+|++|.++. .....|.++++|++|++++|.+ ....+.+|.++++|++|++++|.++.+|. .|
T Consensus 45 ~vP~~lp~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i---~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 45 KIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp SCCSSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred ccCCCCCcCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcC---CCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 3466788999999999999987 5667899999999999999987 44556678999999999999999997775 47
Q ss_pred CCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcC-cCCccccccccccEEEEeccccc
Q 039007 83 GNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLE-ELPKDIRYLVSLRMFVVTTKQKS 147 (360)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~ 147 (360)
..+++|++|++++| .+..++ ..++++++|++|++++|.+.. .+|..++.+++|++|++++|.+.
T Consensus 121 ~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 121 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 88999999999988 455555 457889999999999876543 45677788888888888776543
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.7e-26 Score=218.83 Aligned_cols=289 Identities=18% Similarity=0.158 Sum_probs=187.8
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc--CcCCCCCCCc
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL--PREIGNLKHM 88 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L 88 (360)
++++.|++.+|.++. ..+..|.++++|++|++++|.+. .++.. .+++|++|++++|.++.+ |..+.++++|
T Consensus 76 ~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~----~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 76 SELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQ----NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp TTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCC----EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred CCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCC----ccCcc--ccccCCEEECCCCCccccCchHhhcccCcc
Confidence 689999999999987 55678999999999999999874 23332 789999999999998854 4789999999
Q ss_pred CeEeccccccccccchhhhcCCcc--ceEeeccccC--cCcCCccccc--------------------------cc----
Q 039007 89 RYLDLSRYCQIKKLPNSICELQSL--QTLILRGCLK--LEELPKDIRY--------------------------LV---- 134 (360)
Q Consensus 89 ~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~p~~~~~--------------------------l~---- 134 (360)
++|++++|.... ..+..+++| +.|++++|.. .+..|..+.. ++
T Consensus 149 ~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 225 (562)
T 3a79_B 149 TFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225 (562)
T ss_dssp CEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred cEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEE
Confidence 999999874433 234444555 8888887755 3333333322 11
Q ss_pred ---------------------------------------------------cccEEEEeccccc-cccccC---------
Q 039007 135 ---------------------------------------------------SLRMFVVTTKQKS-LQESGI--------- 153 (360)
Q Consensus 135 ---------------------------------------------------~L~~L~l~~~~~~-~~~~~~--------- 153 (360)
+|++|++++|.+. .+|..+
T Consensus 226 L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~ 305 (562)
T 3a79_B 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305 (562)
T ss_dssp EEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC
T ss_pred ecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccch
Confidence 4444555544443 222222
Q ss_pred --------------------------------------------CCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEec
Q 039007 154 --------------------------------------------ACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILV 189 (360)
Q Consensus 154 --------------------------------------------~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 189 (360)
..+++|+.|++++|...+..+..+..+++|+.|+++
T Consensus 306 ~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 385 (562)
T 3a79_B 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385 (562)
T ss_dssp EEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECC
T ss_pred heehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECC
Confidence 445566666666665544455556666666666666
Q ss_pred cCCCCc--ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCC
Q 039007 190 DCPSLI--SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKT 267 (360)
Q Consensus 190 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 267 (360)
+|.... .+|..+..+++|++|++++|......+ ......+++|+.|++++|...+..+..+ .++
T Consensus 386 ~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~~ 451 (562)
T 3a79_B 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY----------DRTCAWAESILVLNLSSNMLTGSVFRCL----PPK 451 (562)
T ss_dssp SSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS----------SCCCCCCTTCCEEECCSSCCCGGGGSSC----CTT
T ss_pred CCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC----------hhhhcCcccCCEEECCCCCCCcchhhhh----cCc
Confidence 664332 233445666666666666655332111 1123445677777777776544433322 157
Q ss_pred CcEEecccCCCcccccccccCccccccccccccccccCCCcc-ccCCCccceecccCCh
Q 039007 268 LQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPED-IHHLTTLKTLSIKECP 325 (360)
Q Consensus 268 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~ 325 (360)
|++|++++| .++.+|..+.++++|++|++++|++. .+|.. +..+++|++|++++||
T Consensus 452 L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 452 VKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCC
T ss_pred CCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCC
Confidence 888888877 55677776667888888888887754 55554 6777888888887774
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=7e-26 Score=211.02 Aligned_cols=188 Identities=20% Similarity=0.192 Sum_probs=101.6
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY 90 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 90 (360)
++++.|++.++.+.. .+.+..+++|++|++++|.+. ...+ +.++++|++|++++|.+..++. +..+++|++
T Consensus 46 ~~l~~L~l~~~~i~~---l~~~~~l~~L~~L~Ls~n~l~---~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLT---DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp HTCCEEECCSSCCCC---CTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred ccccEEecCCCCCcc---CcchhhhcCCCEEECCCCccC---Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence 467777777776655 234667777777777777653 2222 6677777777777777665554 667777777
Q ss_pred EeccccccccccchhhhcCCccceEeeccccCcCcCCccccc---------------------cccccEEEEeccccccc
Q 039007 91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRY---------------------LVSLRMFVVTTKQKSLQ 149 (360)
Q Consensus 91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~---------------------l~~L~~L~l~~~~~~~~ 149 (360)
|++++| .+..++. +..+++|++|++++|... .++ .+.. +++|+.|++++|.+...
T Consensus 117 L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 117 LTLFNN-QITDIDP-LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp EECCSS-CCCCCGG-GTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred EECCCC-CCCCChH-HcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC
Confidence 777766 4444444 666777777777765432 232 2334 44444444444444333
Q ss_pred cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007 150 ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK 216 (360)
Q Consensus 150 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 216 (360)
..+..+++|+.|++++|......+ ++.+++|+.|++++|... .+ +.+..+++|++|++++|.
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSC
T ss_pred -hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-cc-hhhhcCCCCCEEECCCCc
Confidence 224444455555555443222111 334445555555544321 11 223444555555555543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=2.4e-26 Score=209.34 Aligned_cols=282 Identities=17% Similarity=0.127 Sum_probs=226.2
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcC
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMR 89 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~ 89 (360)
++++.|++.++.+.. .....|..+++|++|++++|.+ ....+..+.++++|++|++++|.++.+|.. +..+++|+
T Consensus 69 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 69 RQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp CCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCC---CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 579999999999877 5556899999999999999987 445566789999999999999999988876 58999999
Q ss_pred eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007 90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN 169 (360)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (360)
+|++++|......+..+..+++|+.|++++|... .+ .+..+++|+.|++++|.+... ...++|+.|++++|..
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HV--DLSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSI 217 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BC--CGGGCTTCSEEECCSSCCSEE----ECCSSCSEEECCSSCC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCC-cc--ccccccccceeeccccccccc----CCCCcceEEECCCCee
Confidence 9999998554444667889999999999997544 34 367789999999999977654 3456899999999754
Q ss_pred hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecC
Q 039007 170 LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSG 249 (360)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 249 (360)
..++. ...++|+.|++++|.... . +.+..+++|++|++++|...... +.....+++|+.|++++
T Consensus 218 -~~~~~--~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 218 -NVVRG--PVNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIM-----------YHPFVKMQRLERLYISN 281 (390)
T ss_dssp -CEEEC--CCCSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEE-----------SGGGTTCSSCCEEECCS
T ss_pred -eeccc--cccccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCcC-----------hhHccccccCCEEECCC
Confidence 33333 235899999999986543 2 56788999999999998644321 22345678999999999
Q ss_pred ccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChh
Q 039007 250 LKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPA 326 (360)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 326 (360)
|. +..++... ..+++|++|++++| .+..+|..+..+++|++|++++|++. .++ +..+++|++|++++|+-
T Consensus 282 n~-l~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 282 NR-LVALNLYG--QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp SC-CCEEECSS--SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCE
T ss_pred Cc-CcccCccc--CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCc
Confidence 86 44566555 68899999999999 56678888889999999999999865 444 66789999999999864
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.1e-26 Score=203.38 Aligned_cols=229 Identities=26% Similarity=0.367 Sum_probs=118.6
Q ss_pred ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007 36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL 115 (360)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 115 (360)
+++++|++++|.+. .++..+.++++|++|++++|.+..+|..+..+++|++|++++| .+..+|..+.++++|+.|
T Consensus 81 ~~l~~L~L~~n~l~----~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS----SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEE
T ss_pred cceeEEEccCCCch----hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEE
Confidence 45555555555542 2223344455555555555555555555555555555555555 233555555555555555
Q ss_pred eeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCc
Q 039007 116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLI 195 (360)
Q Consensus 116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 195 (360)
++++|...+.+|..+... .....+..+++|+.|++++|.. +.+|..++.+++|++|++++|...
T Consensus 156 ~L~~n~~~~~~p~~~~~~--------------~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST--------------DASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE--------------C-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCC-
T ss_pred ECCCCCCccccChhHhhc--------------cchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCC-
Confidence 555555555555443320 0001122355566666655432 245555566666666666665432
Q ss_pred ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEeccc
Q 039007 196 SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIED 275 (360)
Q Consensus 196 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 275 (360)
.+|+.+..+++|++|++++|... +.+|..+ ..+++|++|++++
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~-----------------------------------~~~p~~~--~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTAL-----------------------------------RNYPPIF--GGRAPLKRLILKD 262 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTC-----------------------------------CBCCCCT--TCCCCCCEEECTT
T ss_pred cCchhhccCCCCCEEECcCCcch-----------------------------------hhhHHHh--cCCCCCCEEECCC
Confidence 44555555566666655554322 2222223 4445555555555
Q ss_pred CCCcccccccccCccccccccccccccccCCCccccCCCccceeccc
Q 039007 276 CPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIK 322 (360)
Q Consensus 276 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 322 (360)
|...+.+|..+..+++|++|++++|+..+.+|..+.++++|+.+.+.
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 55555555555555555555555555555555555555555555554
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=3.1e-25 Score=206.60 Aligned_cols=191 Identities=18% Similarity=0.246 Sum_probs=127.7
Q ss_pred CCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcC
Q 039007 10 PKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMR 89 (360)
Q Consensus 10 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 89 (360)
.++++.|++.++.+.. +.+ +..+++|++|++++|.+. ...+ +.++++|++|++++|.++.++. +..+++|+
T Consensus 67 l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~---~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 137 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIA---DITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLN 137 (466)
T ss_dssp CTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCS
T ss_pred hcCCCEEECCCCccCC--chh-hhccccCCEEECCCCccc---cChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCC
Confidence 3678888888888776 222 788888888888888763 2222 7778888888888887776654 77777788
Q ss_pred eEeccccccccccch--------------------hhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccc
Q 039007 90 YLDLSRYCQIKKLPN--------------------SICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ 149 (360)
Q Consensus 90 ~L~l~~~~~~~~~~~--------------------~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~ 149 (360)
+|++++|. +..++. .+..+++|+.|++++|. ...++ .+..+++|+.|++++|.+...
T Consensus 138 ~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 138 RLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCC
T ss_pred EEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCccccc
Confidence 88777763 333322 14556777777777764 33333 467788888888888877665
Q ss_pred cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcC
Q 039007 150 ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKS 217 (360)
Q Consensus 150 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 217 (360)
+. +..+++|+.|++++|.... + ..+..+++|+.|++++|.... ++. +..+++|+.|++++|..
T Consensus 215 ~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 215 TP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQI 277 (466)
T ss_dssp GG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCC
T ss_pred cc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCcc
Confidence 33 6667778888887764322 2 245667777777777765433 222 56667777777776643
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6e-26 Score=217.71 Aligned_cols=282 Identities=16% Similarity=0.117 Sum_probs=224.9
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcC
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMR 89 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~ 89 (360)
++++.|++.++.+.. .....|..+++|++|++++|.+ ....+..|.++++|++|++++|.++.+|.. +..+++|+
T Consensus 75 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 75 RQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp CCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcC---CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 579999999999987 5566899999999999999987 445566789999999999999999988776 58999999
Q ss_pred eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007 90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN 169 (360)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (360)
+|++++|...+..|..+..+++|+.|++++|.+. .++ ++.+++|+.|++++|.+... ...++|+.|++++|..
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSI 223 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCC
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhhhhhhhcccCccccc----cCCchhheeeccCCcc
Confidence 9999998655555667899999999999998544 343 66789999999999877654 3456899999998754
Q ss_pred hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecC
Q 039007 170 LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSG 249 (360)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 249 (360)
..++.. ..++|+.|++++|.... +..+..+++|+.|++++|...... +..+..+++|+.|+|++
T Consensus 224 -~~~~~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 224 -NVVRGP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM-----------YHPFVKMQRLERLYISN 287 (597)
T ss_dssp -CEEECS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE-----------SGGGTTCSSCCEEECTT
T ss_pred -cccccc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC-----------HHHhcCccCCCEEECCC
Confidence 333322 24789999999986543 466788999999999998644321 23355678999999999
Q ss_pred ccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChh
Q 039007 250 LKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPA 326 (360)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 326 (360)
|.. ..++... ..+++|++|+|++| .+..+|..+..+++|+.|++++|.+.. ++ +..+++|++|++++|+-
T Consensus 288 N~l-~~l~~~~--~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 288 NRL-VALNLYG--QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp SCC-CEEECSS--SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCE
T ss_pred CCC-CCCCccc--ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCC
Confidence 864 4566555 67899999999998 556788888899999999999998654 33 56789999999999864
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=5.3e-25 Score=203.91 Aligned_cols=182 Identities=16% Similarity=0.096 Sum_probs=111.9
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY 90 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 90 (360)
++++.|++.++.+.+ + +.+..+++|++|++++|.+... + +..+++|++|++++|.++.++ +..+++|++
T Consensus 42 ~~L~~L~Ls~n~l~~--~-~~l~~l~~L~~L~Ls~n~l~~~----~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD--M-TGIEKLTGLTKLICTSNNITTL----D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCC--C-TTGGGCTTCSEEECCSSCCSCC----C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCCccc--C-hhhcccCCCCEEEccCCcCCeE----c--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 667888888887776 2 3677888888888888876421 2 667788888888888777664 677778888
Q ss_pred EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCch
Q 039007 91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL 170 (360)
Q Consensus 91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 170 (360)
|++++| .++.++ ++.+++|++|++++|...+ ++ ++.+++|+.|++++|...... .+..+++|+.|++++|..
T Consensus 111 L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l- 182 (457)
T 3bz5_A 111 LNCDTN-KLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKI- 182 (457)
T ss_dssp EECCSS-CCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCC-
T ss_pred EECCCC-cCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCcc-
Confidence 888777 344444 6677777777777764433 32 556666666666666322211 355556666666665532
Q ss_pred hhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007 171 EYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK 216 (360)
Q Consensus 171 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 216 (360)
+.++ +..+++|+.|++++|.... + .++.+++|++|++++|.
T Consensus 183 ~~l~--l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 183 TELD--VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp CCCC--CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSC
T ss_pred ceec--cccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCc
Confidence 2222 4455555555555553222 2 24445555555555543
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=2.3e-25 Score=221.79 Aligned_cols=275 Identities=15% Similarity=0.050 Sum_probs=174.8
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCcC--CCCCCC
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPRE--IGNLKH 87 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~--~~~l~~ 87 (360)
++++.|++.++.......+..|.++++|++|++++|.+ ....+..|.++++|++|++++|.+. .+|.. +..+++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l---~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI---YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC---CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC---cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 67999999998665523467899999999999999987 4555677999999999999999987 45554 889999
Q ss_pred cCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCcccccc--ccccEEEEeccccccc-cccCCCCCC-----
Q 039007 88 MRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYL--VSLRMFVVTTKQKSLQ-ESGIACLSS----- 158 (360)
Q Consensus 88 L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l--~~L~~L~l~~~~~~~~-~~~~~~l~~----- 158 (360)
|++|++++|...+..+ ..++++++|++|++++|...+..|..+..+ ++|+.|++++|.+... +..+..+++
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 9999999985544433 568899999999999987766667777666 7788888887766543 333444443
Q ss_pred -CcEeeccCCCchhhhHhh------------------------------------hcC--CCCccEEEeccCCCCcccCc
Q 039007 159 -LRSLIISHCWNLEYLFEH------------------------------------IGQ--LSGLRSLILVDCPSLISLPS 199 (360)
Q Consensus 159 -L~~L~l~~~~~~~~~~~~------------------------------------l~~--l~~L~~L~l~~~~~~~~~~~ 199 (360)
|+.|++++|......+.. +.. .++|+.|++++|......+.
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~ 284 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh
Confidence 777777766322111111 111 25667777776655555555
Q ss_pred ccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCc
Q 039007 200 AVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNF 279 (360)
Q Consensus 200 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 279 (360)
.+..+++|+.|++++|...... ...+..+++|+.|++++|......+..+ ..+++|++|++++|...
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~-----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~ 351 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIA-----------DEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIA 351 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEEC-----------TTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECCSCCCC
T ss_pred hhhcCCCCCEEECCCCcCCCCC-----------hHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECCCCCCC
Confidence 5666677777777666433211 1122334455555555554333323333 44555555555555322
Q ss_pred ccccccccCccccccccccccc
Q 039007 280 MALQGSLKDLEALETLLISACR 301 (360)
Q Consensus 280 ~~~~~~~~~l~~L~~L~l~~~~ 301 (360)
...+..+.++++|+.|++++|.
T Consensus 352 ~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 352 IIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CCCSSCSCSCCCCCEEEEETCC
T ss_pred ccChhhhcCCCCCCEEECCCCC
Confidence 2222334445555555555544
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.2e-26 Score=203.29 Aligned_cols=233 Identities=22% Similarity=0.276 Sum_probs=172.5
Q ss_pred CCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEE
Q 039007 62 SQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVV 141 (360)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 141 (360)
..++++|+++++.++.+|..+.++++|++|++++|. +..+|..++.+++|++|++++|.+. .+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 467888888888888888777778888888888774 4477777788888888888877444 77777778888888888
Q ss_pred ecccccc-ccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccc
Q 039007 142 TTKQKSL-QESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNL 220 (360)
Q Consensus 142 ~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 220 (360)
++|.... .+..+. ...+. ..+..+++|++|++++|... .+|..++.+++|++|++++|.
T Consensus 158 ~~n~~~~~~p~~~~------~~~~~---------~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~---- 217 (328)
T 4fcg_A 158 RACPELTELPEPLA------STDAS---------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP---- 217 (328)
T ss_dssp EEETTCCCCCSCSE------EEC-C---------CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC----
T ss_pred CCCCCccccChhHh------hccch---------hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC----
Confidence 7764432 222221 11111 22456788888888887443 677777777777777776653
Q ss_pred cccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCcccccccccccc
Q 039007 221 NLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISAC 300 (360)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 300 (360)
+..++..+ ..+++|++|++++|...+.+|..+.++++|++|++++|
T Consensus 218 --------------------------------l~~l~~~l--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 218 --------------------------------LSALGPAI--HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp --------------------------------CCCCCGGG--GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred --------------------------------CCcCchhh--ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence 22344444 67899999999999888899999999999999999999
Q ss_pred ccccCCCccccCCCccceecccCChhHHhhcCCCCCCCCccccccceeeeccccc
Q 039007 301 RKLSSLPEDIHHLTTLKTLSIKECPALWERCKPLTGEDWSKIARIPRIMLDDEMT 355 (360)
Q Consensus 301 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (360)
...+.+|..+..+++|++|++++|+... ..+..+..+..+..+.+..+.+
T Consensus 264 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~-----~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLS-----RLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCCBCCTTGGGCTTCCEEECTTCTTCC-----CCCGGGGGSCTTCEEECCGGGS
T ss_pred CchhhcchhhhcCCCCCEEeCCCCCchh-----hccHHHhhccCceEEeCCHHHH
Confidence 9999999999999999999999996433 3455566677777777766554
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.3e-24 Score=201.35 Aligned_cols=279 Identities=15% Similarity=0.113 Sum_probs=212.1
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY 90 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 90 (360)
++++.|++.++.+++. .+..+++|++|++++|.+... + +.++++|++|++++|.++.+| +..+++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~----~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNL----D--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp TTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCC----C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCcee----e--cCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 7899999999998882 288999999999999987432 2 788999999999999998875 889999999
Q ss_pred EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCch
Q 039007 91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL 170 (360)
Q Consensus 91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 170 (360)
|++++| .++.++ ++.+++|++|++++|...+.+ .++.+++|+.|++++|.+...+ +..+++|+.|++++|...
T Consensus 132 L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 132 LNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp EECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCS
T ss_pred EECCCC-ccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCC
Confidence 999988 444553 788999999999998777766 4788999999999999988875 888999999999998544
Q ss_pred hhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCc
Q 039007 171 EYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGL 250 (360)
Q Consensus 171 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 250 (360)
. + .++.+++|+.|++++|.... +| +..+++|++|++++|....... ..+. ..........+|+.|++++|
T Consensus 205 ~-~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~-~~l~---~L~~L~l~~n~L~~L~l~~n 274 (457)
T 3bz5_A 205 K-L--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV-STLS---KLTTLHCIQTDLLEIDLTHN 274 (457)
T ss_dssp C-C--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC-TTCT---TCCEEECTTCCCSCCCCTTC
T ss_pred e-e--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH-HHCC---CCCEEeccCCCCCEEECCCC
Confidence 3 3 37789999999999986544 65 7789999999999886443211 0000 00000011125667777777
Q ss_pred cCCCCchhhhhcCCCCCCcEEecccCCCcccccc--------cccCccccccccccccccccCCCccccCCCccceeccc
Q 039007 251 KQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQG--------SLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIK 322 (360)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~--------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 322 (360)
...+.+|. ..+++|++|++++|..++.+|. .+.++++|++|++++|++.+ ++ +.++++|+.|+++
T Consensus 275 ~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 275 TQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCV 347 (457)
T ss_dssp TTCCEEEC----TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECC
T ss_pred ccCCcccc----cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECC
Confidence 76666652 5678888888888876665543 24566788888888887554 43 7778888888888
Q ss_pred CCh
Q 039007 323 ECP 325 (360)
Q Consensus 323 ~c~ 325 (360)
+|.
T Consensus 348 ~N~ 350 (457)
T 3bz5_A 348 NAH 350 (457)
T ss_dssp SSC
T ss_pred CCC
Confidence 774
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=6.7e-24 Score=188.78 Aligned_cols=288 Identities=16% Similarity=0.134 Sum_probs=212.0
Q ss_pred cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007 37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL 115 (360)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 115 (360)
+++.++++++.+......+ .+.|++|++++|.++.++. .+..+++|++|++++|...+..|..+..+++|++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCccccCccC------CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 7899999988764322222 2678999999999987665 68999999999999885544457889999999999
Q ss_pred eeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCCchh--hhHhhhcCCCCccEEEeccCC
Q 039007 116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCWNLE--YLFEHIGQLSGLRSLILVDCP 192 (360)
Q Consensus 116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~ 192 (360)
++++|. ...+|..+. ++|+.|++++|.+...+ ..+..+++|+.|++++|.... ..+..+..+++|+.|++++|.
T Consensus 106 ~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 999874 456776554 78999999999887663 457889999999999986532 455678889999999999985
Q ss_pred CCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEe
Q 039007 193 SLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLG 272 (360)
Q Consensus 193 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~ 272 (360)
.+.+|..+. ++|++|++++|...... +.....+++|+.|++++|......+..+ ..+++|++|+
T Consensus 183 -l~~l~~~~~--~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~ 246 (330)
T 1xku_A 183 -ITTIPQGLP--PSLTELHLDGNKITKVD-----------AASLKGLNNLAKLGLSFNSISAVDNGSL--ANTPHLRELH 246 (330)
T ss_dssp -CCSCCSSCC--TTCSEEECTTSCCCEEC-----------TGGGTTCTTCCEEECCSSCCCEECTTTG--GGSTTCCEEE
T ss_pred -cccCCcccc--ccCCEEECCCCcCCccC-----------HHHhcCCCCCCEEECCCCcCceeChhhc--cCCCCCCEEE
Confidence 445665543 89999999988643321 2234567789999999987554444445 6789999999
Q ss_pred cccCCCcccccccccCccccccccccccccccCCCcccc------CCCccceecccCChhHHhhcCCCCCCCCccccccc
Q 039007 273 IEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIH------HLTTLKTLSIKECPALWERCKPLTGEDWSKIARIP 346 (360)
Q Consensus 273 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~ 346 (360)
+++| .++.+|..+..+++|++|++++|++....+..+. ..+.|+.+++.+||.... ......+.....+.
T Consensus 247 L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~---~i~~~~f~~~~~l~ 322 (330)
T 1xku_A 247 LNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW---EIQPSTFRCVYVRA 322 (330)
T ss_dssp CCSS-CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG---GSCGGGGTTCCCGG
T ss_pred CCCC-cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc---ccCcccccccccee
Confidence 9998 5668888899999999999999986543333332 247889999999984321 11223455556677
Q ss_pred eeeeccc
Q 039007 347 RIMLDDE 353 (360)
Q Consensus 347 ~~~~~~~ 353 (360)
.+++.++
T Consensus 323 ~l~L~~N 329 (330)
T 1xku_A 323 AVQLGNY 329 (330)
T ss_dssp GEEC---
T ss_pred EEEeccc
Confidence 7776654
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=3.8e-24 Score=190.49 Aligned_cols=287 Identities=16% Similarity=0.130 Sum_probs=216.4
Q ss_pred cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007 37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL 115 (360)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 115 (360)
+++.++++++.+...+.. + .++|++|++++|.+..+ |..+..+++|++|++++|......|..+.++++|++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~----~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE----I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCSSCCSC----C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCccccCCC----C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 799999999886432222 2 36899999999999966 4579999999999999985554557789999999999
Q ss_pred eeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCCchh--hhHhhhcCCCCccEEEeccCC
Q 039007 116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCWNLE--YLFEHIGQLSGLRSLILVDCP 192 (360)
Q Consensus 116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~ 192 (360)
++++|. ...+|..+. ++|++|++++|.+...+ ..+..+++|+.|++++|.... ..+..+..+ +|+.|++++|.
T Consensus 108 ~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 108 YISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp ECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred ECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 999974 457776655 89999999999988765 458899999999999986532 445566666 99999999985
Q ss_pred CCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEe
Q 039007 193 SLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLG 272 (360)
Q Consensus 193 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~ 272 (360)
.+.+|..+. ++|++|++++|..... .......+++|+.|++++|......+..+ ..+++|++|+
T Consensus 184 -l~~l~~~~~--~~L~~L~l~~n~i~~~-----------~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~ 247 (332)
T 2ft3_A 184 -LTGIPKDLP--ETLNELHLDHNKIQAI-----------ELEDLLRYSKLYRLGLGHNQIRMIENGSL--SFLPTLRELH 247 (332)
T ss_dssp -CSSCCSSSC--SSCSCCBCCSSCCCCC-----------CTTSSTTCTTCSCCBCCSSCCCCCCTTGG--GGCTTCCEEE
T ss_pred -CCccCcccc--CCCCEEECCCCcCCcc-----------CHHHhcCCCCCCEEECCCCcCCcCChhHh--hCCCCCCEEE
Confidence 445666553 7999999998864432 12345677899999999997665544455 7889999999
Q ss_pred cccCCCcccccccccCccccccccccccccccCCCccccC------CCccceecccCChhHHhhcCCCCCCCCccccccc
Q 039007 273 IEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHH------LTTLKTLSIKECPALWERCKPLTGEDWSKIARIP 346 (360)
Q Consensus 273 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~l~ 346 (360)
+++| .++.+|..+..+++|++|++++|++....+..+.. .+.|+.|++.+||..... .....+..+..+.
T Consensus 248 L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~---~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 248 LDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE---VQPATFRCVTDRL 323 (332)
T ss_dssp CCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG---SCGGGGTTBCCST
T ss_pred CCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc---cCcccccccchhh
Confidence 9998 56688988999999999999999866543333332 467999999999843221 1223345566677
Q ss_pred eeeeccc
Q 039007 347 RIMLDDE 353 (360)
Q Consensus 347 ~~~~~~~ 353 (360)
.+++.++
T Consensus 324 ~l~l~~n 330 (332)
T 2ft3_A 324 AIQFGNY 330 (332)
T ss_dssp TEEC---
T ss_pred hhhcccc
Confidence 7777654
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=9e-25 Score=196.23 Aligned_cols=253 Identities=21% Similarity=0.180 Sum_probs=151.7
Q ss_pred ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEeccccccccccchh-hhcCCccc
Q 039007 36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKLPNS-ICELQSLQ 113 (360)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~ 113 (360)
++|++|++++|.+ ....+..+.++++|++|++++|.++.+ |..+..+++|++|++++| .++.++.. +..+++|+
T Consensus 52 ~~L~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRI---TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcC---cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCC
Confidence 3677777777765 333334566777777777777777644 345677777777777766 34444433 66677777
Q ss_pred eEeeccccCcCcCCc--cccccccccEEEEeccc-cccc-cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEec
Q 039007 114 TLILRGCLKLEELPK--DIRYLVSLRMFVVTTKQ-KSLQ-ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILV 189 (360)
Q Consensus 114 ~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~-~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 189 (360)
+|++++|. ...+|. .+..+++|+.|++++|. +... +..+..+++|+.|++++|......+..+..+++|++|+++
T Consensus 128 ~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 128 FLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 77777753 334554 46677777777777763 4333 3456677777777777765544556666777777777777
Q ss_pred cCCCCcccCcc-cCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCC----CchhhhhcCC
Q 039007 190 DCPSLISLPSA-VKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLL----DLPQWLLQGS 264 (360)
Q Consensus 190 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~~~~ 264 (360)
+|.. ..++.. +..+++|++|++++|........ ..........++.+++.++.... .+|.++ ..
T Consensus 207 ~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l--~~ 275 (353)
T 2z80_A 207 MKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFS--------ELSTGETNSLIKKFTFRNVKITDESLFQVMKLL--NQ 275 (353)
T ss_dssp CSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------CCCCCCEEEEESCBCCHHHHHHHHHHH--HT
T ss_pred CCcc-ccchhhhhhhcccccEEECCCCcccccccc--------ccccccccchhhccccccccccCcchhhhHHHH--hc
Confidence 7653 333332 33467777777777643321110 00111223345555555543221 345555 56
Q ss_pred CCCCcEEecccCCCccccccc-ccCccccccccccccccccC
Q 039007 265 TKTLQFLGIEDCPNFMALQGS-LKDLEALETLLISACRKLSS 305 (360)
Q Consensus 265 ~~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~ 305 (360)
+++|++|++++| .++.+|.. +..+++|++|++++|++..+
T Consensus 276 l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 276 ISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 778888888877 44456654 47778888888888776544
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.6e-24 Score=190.68 Aligned_cols=207 Identities=17% Similarity=0.126 Sum_probs=107.8
Q ss_pred ccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCC
Q 039007 6 CQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNL 85 (360)
Q Consensus 6 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l 85 (360)
+..+|+++++|++.++.+.. .....|.++++|++|++++|.+... +..+..+..+++|++|++++|.+..+|..+..+
T Consensus 23 p~~~~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 23 PTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFK-GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp CSCCCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEE-EEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCCCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcc-cCcccccccccccCEEECCCCccccChhhcCCC
Confidence 34455566666666666554 3333456666666666666654211 111233445666666666666666555556666
Q ss_pred CCcCeEeccccccccccc--hhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccc--ccccCCCCCCCcE
Q 039007 86 KHMRYLDLSRYCQIKKLP--NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSL--QESGIACLSSLRS 161 (360)
Q Consensus 86 ~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~ 161 (360)
++|++|++++| .+..++ ..+..+++|+.|++++|...+..+..+..+++|+.|++++|.+.. .+..+..+++|+.
T Consensus 101 ~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 101 EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp TTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 66666666655 233332 245556666666666654444444445555666666666555543 3445555555555
Q ss_pred eeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007 162 LIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC 215 (360)
Q Consensus 162 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 215 (360)
|++++|...+..+..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 555555433333444455555555555555333222223344444444444444
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2.6e-23 Score=192.92 Aligned_cols=243 Identities=17% Similarity=0.100 Sum_probs=134.7
Q ss_pred cEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc
Q 039007 66 RVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ 145 (360)
Q Consensus 66 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 145 (360)
..++.++..++.+|..+. +++++|++++|......+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 344444444555554432 455566665553333334445555666666665554433333445555566666666555
Q ss_pred ccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCc-ccCCCCCCCEEeecCCcCcccccc
Q 039007 146 KSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPS-AVKCLSSSETLILIDCKSLNLNLN 223 (360)
Q Consensus 146 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~ 223 (360)
+...+ ..+..+++|++|++++|......+..+..+++|+.|++++|...+.++. .+..+++|++|++++|.....
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--- 211 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--- 211 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---
Confidence 55443 2355556666666665543322233455566666666666555544443 355566666666666543221
Q ss_pred ccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccc
Q 039007 224 IEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKL 303 (360)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 303 (360)
.....+++|+.|+|++|......+..+ ..+++|++|++++|......+..+.++++|+.|++++|.+.
T Consensus 212 ----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 212 ----------PNLTPLVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp ----------CCCTTCTTCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ----------ccccccccccEEECcCCcCcccCcccc--cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 113445566666666666544445455 66777777777777544455566677777777777777655
Q ss_pred cCCCccccCCCccceecccCCh
Q 039007 304 SSLPEDIHHLTTLKTLSIKECP 325 (360)
Q Consensus 304 ~~~~~~~~~~~~L~~L~l~~c~ 325 (360)
...+..+..+++|++|++++||
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSC
T ss_pred ccChHHhccccCCCEEEccCCC
Confidence 4444455667777777777664
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=1.3e-26 Score=215.76 Aligned_cols=208 Identities=17% Similarity=0.128 Sum_probs=134.0
Q ss_pred CCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCC-cccchHHHhhcCCCccEEEEeCCCCcc-cCcC-CCCC
Q 039007 9 IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENT-SESFFTSCISKSQFLRVLDLDDSTIEV-LPRE-IGNL 85 (360)
Q Consensus 9 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~-~~~l 85 (360)
+|++++.|++.++.+....+...+..+++|++|++++|.+.. ....++..+..+++|++|++++|.+.. .+.. ...+
T Consensus 1 l~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp -CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CCccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 478889999988888775555568888899999999888631 112456678888889999998888762 2221 2223
Q ss_pred C----CcCeEecccccccc----ccchhhhcCCccceEeeccccCcCcCCccc-----cccccccEEEEeccccccc---
Q 039007 86 K----HMRYLDLSRYCQIK----KLPNSICELQSLQTLILRGCLKLEELPKDI-----RYLVSLRMFVVTTKQKSLQ--- 149 (360)
Q Consensus 86 ~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-----~~l~~L~~L~l~~~~~~~~--- 149 (360)
+ +|++|++++|.... .++..+..+++|++|++++|......+..+ ...++|++|++++|.+...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 3 68888888885442 346667788888888888875443222222 1245688888887766542
Q ss_pred --cccCCCCCCCcEeeccCCCchhhhHhhhc-----CCCCccEEEeccCCCCc----ccCcccCCCCCCCEEeecCCc
Q 039007 150 --ESGIACLSSLRSLIISHCWNLEYLFEHIG-----QLSGLRSLILVDCPSLI----SLPSAVKCLSSSETLILIDCK 216 (360)
Q Consensus 150 --~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~ 216 (360)
+..+..+++|+.|++++|......+..+. ..++|+.|++++|.... .++..+..+++|++|++++|.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 33455567777888777754333222222 25577777777775433 245555566777777777664
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=1.2e-23 Score=185.01 Aligned_cols=246 Identities=18% Similarity=0.069 Sum_probs=164.7
Q ss_pred cEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcCeEecccccccc--ccchhhhcCCccceE
Q 039007 39 RTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMRYLDLSRYCQIK--KLPNSICELQSLQTL 115 (360)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L 115 (360)
+.++++++.+...+..+ .++|++|++++|.++.+|.. +.++++|++|++++|.... ..+..+..+++|++|
T Consensus 10 ~~l~c~~~~l~~ip~~~------~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCSSCCSCC------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred CEEEcCCCCcccCCCCC------CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence 46777766653222211 25788999999888877765 6788899999998874332 225566778899999
Q ss_pred eeccccCcCcCCccccccccccEEEEecccccccc--ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCC
Q 039007 116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE--SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPS 193 (360)
Q Consensus 116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 193 (360)
++++|. ...+|..+..+++|++|++++|.+...+ ..+..+++|+.|++++|......+..+..+++|++|++++|..
T Consensus 84 ~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 84 DLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp ECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 998874 4457777888888899988888877664 3677888888888888766555666677788888888888765
Q ss_pred Cc-ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEe
Q 039007 194 LI-SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLG 272 (360)
Q Consensus 194 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~ 272 (360)
.. .+|..+..+++|++|++++|...... +.....+++|+.|++++|......+..+ ..+++|++|+
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~ 229 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLS-----------PTAFNSLSSLQVLNMSHNNFFSLDTFPY--KCLNSLQVLD 229 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECTTSCCSBCCSGGG--TTCTTCCEEE
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcC-----------HHHhcCCCCCCEEECCCCccCccChhhc--cCcccCCEeE
Confidence 44 46777777888888888877533211 1223445566666666665433323233 5566666666
Q ss_pred cccCCCcccccccccCcc-cccccccccccccc
Q 039007 273 IEDCPNFMALQGSLKDLE-ALETLLISACRKLS 304 (360)
Q Consensus 273 L~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~ 304 (360)
+++|...+..+..+..++ +|++|++++|++..
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 666654445555555553 66666666666543
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=3.4e-23 Score=191.47 Aligned_cols=150 Identities=25% Similarity=0.304 Sum_probs=77.0
Q ss_pred CCccEEEEeCCCCccc-CcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCC-ccccccccccEEE
Q 039007 63 QFLRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFV 140 (360)
Q Consensus 63 ~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~ 140 (360)
+.+++|++++|.+..+ +..+..+++|++|++++|......+..+.++++|+.|++++|.+. .+| ..+..+++|+.|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceee
Confidence 3456666666665533 244556666666666655332223344555666666666655333 333 2455566666666
Q ss_pred Eecccccccc-ccCCCCCCCcEeeccCCCchhhhHh-hhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007 141 VTTKQKSLQE-SGIACLSSLRSLIISHCWNLEYLFE-HIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC 215 (360)
Q Consensus 141 l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 215 (360)
+++|.+...+ ..+..+++|+.|++.+|..+..++. .+..+++|+.|++++|. +..+|. +..+++|+.|++++|
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGN 217 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTS
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCC
Confidence 6666555442 2455555666666655444443332 34455555555555552 223332 344455555555554
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=3.5e-24 Score=186.59 Aligned_cols=267 Identities=18% Similarity=0.113 Sum_probs=165.4
Q ss_pred eEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEe
Q 039007 14 RHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLD 92 (360)
Q Consensus 14 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~ 92 (360)
+.++...+.+.. ++. ...++|++|++++|.+ ....+..|..+++|++|++++|.++.+ |..+..+++|++|+
T Consensus 14 ~~~~c~~~~l~~--ip~--~~~~~l~~L~l~~n~i---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQA--VPV--GIPAASQRIFLHGNRI---SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCSS--CCT--TCCTTCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred eEEEcCcCCccc--CCc--CCCCCceEEEeeCCcC---CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence 445555555544 221 1235777777777776 333445567777777777777777744 55677777777777
Q ss_pred cccccccccc-chhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCCch
Q 039007 93 LSRYCQIKKL-PNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCWNL 170 (360)
Q Consensus 93 l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 170 (360)
+++|..++.+ +..+..+++|++|++++|...+..|..+..+++|++|++++|.+...+ ..+..+++|+.|++++|...
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence 7776535544 556677777777777776555544566677777777777777776554 34667777777777776443
Q ss_pred hhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCc
Q 039007 171 EYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGL 250 (360)
Q Consensus 171 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 250 (360)
...+..+..+++|+.|++++|......+..+..+++|+.|++++|...... ......+++|+.|++++|
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-----------TEALAPLRALQYLRLNDN 235 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-----------HHHHTTCTTCCEEECCSS
T ss_pred ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-----------HHHcccCcccCEEeccCC
Confidence 333334667777788888777665555667777777888887776533211 112345567788888877
Q ss_pred cCCCCchhhhhcCCCCCCcEEecccCCCcccccccccC--ccccccccccccc
Q 039007 251 KQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKD--LEALETLLISACR 301 (360)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~--l~~L~~L~l~~~~ 301 (360)
....+.+... ....++.+....+......|..+.+ +..++..++.+|.
T Consensus 236 ~~~c~~~~~~---~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 236 PWVCDCRARP---LWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp CEECSGGGHH---HHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred CccCCCCcHH---HHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 6554433211 0122444445555444466666654 5566666776663
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=4.3e-23 Score=199.34 Aligned_cols=129 Identities=21% Similarity=0.150 Sum_probs=107.6
Q ss_pred ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccc-hhhhcCCccc
Q 039007 36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQ 113 (360)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~ 113 (360)
+++++|++++|.+ ....+..|.++++|++|++++|.++.+++ .|.++++|++|++++| .++.+| ..|.++++|+
T Consensus 52 ~~~~~LdLs~N~i---~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCC
T ss_pred cCCCEEEeeCCCC---CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCC
Confidence 4799999999997 45556779999999999999999997765 5899999999999998 456665 5689999999
Q ss_pred eEeeccccCcCcCCccccccccccEEEEeccccccc--cccCCCCCCCcEeeccCCC
Q 039007 114 TLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ--ESGIACLSSLRSLIISHCW 168 (360)
Q Consensus 114 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~ 168 (360)
+|++++|.+.+..+..++.+++|++|++++|.+... +..+..+++|+.|++++|.
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 999999865543334689999999999999988653 5677888999999888764
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=5.3e-24 Score=191.19 Aligned_cols=276 Identities=16% Similarity=0.099 Sum_probs=211.1
Q ss_pred hhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccchhhhcC
Q 039007 31 LLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLPNSICEL 109 (360)
Q Consensus 31 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 109 (360)
....|+.....+.+++.+...+ ..+ .++|++|++++|.++.++. .+..+++|++|++++|...+..+..+.++
T Consensus 26 ~~~~C~~~~~c~~~~~~l~~iP----~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 26 ASLSCDRNGICKGSSGSLNSIP----SGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp -CCEECTTSEEECCSTTCSSCC----TTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cCCCCCCCeEeeCCCCCccccc----ccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCC
Confidence 3446677777888887764322 222 2579999999999997765 78999999999999985444445678999
Q ss_pred CccceEeeccccCcCcCCcc-ccccccccEEEEeccccccccc--cCCCCCCCcEeeccCCCchhhh-HhhhcCCCCccE
Q 039007 110 QSLQTLILRGCLKLEELPKD-IRYLVSLRMFVVTTKQKSLQES--GIACLSSLRSLIISHCWNLEYL-FEHIGQLSGLRS 185 (360)
Q Consensus 110 ~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~ 185 (360)
++|++|++++|.. ..+|.. ++.+++|++|++++|.+...+. .+..+++|+.|++++|..++.+ +..+..+++|++
T Consensus 100 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 100 GSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp TTCCEEECCSSCC-SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCEEECCCCcC-CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 9999999999754 456654 8899999999999999887765 6889999999999998655544 567889999999
Q ss_pred EEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhh-hcCC
Q 039007 186 LILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWL-LQGS 264 (360)
Q Consensus 186 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~ 264 (360)
|++++|......+..+..+++|++|+++++....... .....+++|+.|++++|......+..+ ....
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-----------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE-----------IFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH-----------HHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCccccchh-----------hhhhhcccccEEECCCCccccccccccccccc
Confidence 9999998777778889999999999999986432111 012235789999999987554322211 1135
Q ss_pred CCCCcEEecccCCCcc----cccccccCccccccccccccccccCCCcc-ccCCCccceecccCCh
Q 039007 265 TKTLQFLGIEDCPNFM----ALQGSLKDLEALETLLISACRKLSSLPED-IHHLTTLKTLSIKECP 325 (360)
Q Consensus 265 ~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~ 325 (360)
.+.++.++++++.... .+|..+..+++|++|++++|++. .+|.. +..+++|++|++++|+
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 6778889988875433 56778899999999999999865 66666 4789999999999985
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=7.2e-23 Score=189.90 Aligned_cols=231 Identities=20% Similarity=0.162 Sum_probs=176.6
Q ss_pred cccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CC
Q 039007 5 DCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IG 83 (360)
Q Consensus 5 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~ 83 (360)
.+..+|++++.|++.++.+.. .....|.++++|++|++++|.+ ....+..|.++++|++|++++|.++.+|.. +.
T Consensus 69 iP~~~~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 69 VPQGIPSNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSI---RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp CCSCCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred cCCCCCCCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCcc---CCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 355677888999998888877 5566788889999999998886 444556688888899999998888866654 77
Q ss_pred CCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCc-cccccccccEEEEeccccccccccCCCCCCCcE
Q 039007 84 NLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPK-DIRYLVSLRMFVVTTKQKSLQESGIACLSSLRS 161 (360)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 161 (360)
.+++|++|++++|. +..++ ..+.++++|+.|++++|...+.++. .+..+++|+.|++++|.+...+ .+..+++|+.
T Consensus 145 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 222 (452)
T 3zyi_A 145 YLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEE 222 (452)
T ss_dssp SCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCE
T ss_pred ccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccE
Confidence 88889999998874 44444 4677888999999988767766664 4778888999999888887764 5778888889
Q ss_pred eeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCc
Q 039007 162 LIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTH 241 (360)
Q Consensus 162 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (360)
|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|..... ....+..+++
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~ 291 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL-----------PHDLFTPLRY 291 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-----------CTTSSTTCTT
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc-----------ChHHhccccC
Confidence 98888866666677788888888888888876666667778888888888888754321 1223445677
Q ss_pred cceEEecCccC
Q 039007 242 LQKLFVSGLKQ 252 (360)
Q Consensus 242 L~~L~L~~~~~ 252 (360)
|+.|+|++|..
T Consensus 292 L~~L~L~~Np~ 302 (452)
T 3zyi_A 292 LVELHLHHNPW 302 (452)
T ss_dssp CCEEECCSSCE
T ss_pred CCEEEccCCCc
Confidence 88888887753
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=8.2e-23 Score=188.89 Aligned_cols=232 Identities=18% Similarity=0.138 Sum_probs=183.1
Q ss_pred ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CC
Q 039007 4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EI 82 (360)
Q Consensus 4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~ 82 (360)
..+..+|+.++.|++.++.+.. .....|.++++|++|++++|.+ ....+..|.++++|++|++++|.++.++. .+
T Consensus 57 ~iP~~~~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 57 EVPDGISTNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHI---RTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp SCCSCCCTTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCC---CEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred cCCCCCCCCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcC---CccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 3456678889999999998877 5567789999999999999987 44455678889999999999999887765 58
Q ss_pred CCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCc-cccccccccEEEEeccccccccccCCCCCCCc
Q 039007 83 GNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPK-DIRYLVSLRMFVVTTKQKSLQESGIACLSSLR 160 (360)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 160 (360)
..+++|++|++++|. +..++ ..+..+++|+.|++++|...+.++. .+..+++|+.|++++|.+..++ .+..+++|+
T Consensus 133 ~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 133 VYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLD 210 (440)
T ss_dssp CSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCC
T ss_pred hccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccC
Confidence 889999999999884 44444 5678899999999998767766664 5788999999999999888775 578888999
Q ss_pred EeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCC
Q 039007 161 SLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRT 240 (360)
Q Consensus 161 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (360)
.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|..... ....+..++
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~ 279 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL-----------PHDLFTPLH 279 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC-----------CTTTTSSCT
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc-----------ChhHhcccc
Confidence 999999866555577788899999999999876666667788889999999988754321 122345567
Q ss_pred ccceEEecCccC
Q 039007 241 HLQKLFVSGLKQ 252 (360)
Q Consensus 241 ~L~~L~L~~~~~ 252 (360)
+|+.|+|++|..
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 888888888763
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=1.1e-24 Score=192.76 Aligned_cols=247 Identities=14% Similarity=0.097 Sum_probs=130.9
Q ss_pred hhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcC
Q 039007 30 SLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICEL 109 (360)
Q Consensus 30 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 109 (360)
..+..+++|++|++++|.+ ....+..+.++++|++|++++|.++..++ +..+++|++|++++| .++.++ ..
T Consensus 28 ~~~~~~~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~ 98 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPL---SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VG 98 (317)
T ss_dssp HHHTTGGGCSEEECTTSCC---CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----EC
T ss_pred HHhccCCCCCEEECcCCcc---CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CC
Confidence 3445556677777776665 33444556666677777776666664433 666666667766665 333333 23
Q ss_pred CccceEeeccccCcCcCCccccccccccEEEEeccccccc-cccCCCCCCCcEeeccCCCchhhhHhhh-cCCCCccEEE
Q 039007 110 QSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLIISHCWNLEYLFEHI-GQLSGLRSLI 187 (360)
Q Consensus 110 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~ 187 (360)
++|+.|++++|.+.+ ++ ...+++|+.|++++|.+... +..+..+++|+.|++++|......+..+ ..+++|++|+
T Consensus 99 ~~L~~L~l~~n~l~~-~~--~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISR-VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSE-EE--ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCC-cC--ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 566666666653332 22 12245566666666655544 2344555555555555554333222222 2445555555
Q ss_pred eccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCC
Q 039007 188 LVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKT 267 (360)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 267 (360)
+++|.. +.++. ...+++ |+.|++++|.. ..++..+ ..+++
T Consensus 176 L~~N~l-~~~~~-~~~l~~-----------------------------------L~~L~Ls~N~l-~~l~~~~--~~l~~ 215 (317)
T 3o53_A 176 LQYNFI-YDVKG-QVVFAK-----------------------------------LKTLDLSSNKL-AFMGPEF--QSAAG 215 (317)
T ss_dssp CTTSCC-CEEEC-CCCCTT-----------------------------------CCEEECCSSCC-CEECGGG--GGGTT
T ss_pred CCCCcC-ccccc-cccccc-----------------------------------CCEEECCCCcC-Ccchhhh--cccCc
Confidence 555532 22221 112444 55555554432 2333333 45566
Q ss_pred CcEEecccCCCcccccccccCccccccccccccccc-cCCCccccCCCccceecccCChhHHh
Q 039007 268 LQFLGIEDCPNFMALQGSLKDLEALETLLISACRKL-SSLPEDIHHLTTLKTLSIKECPALWE 329 (360)
Q Consensus 268 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~~~~ 329 (360)
|++|++++| .++.+|..+..+++|+.|++++|++. ..++..+..++.|+.+++.+|+.++.
T Consensus 216 L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 216 VTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred ccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 666666665 34455555666666666666666655 34455555666666666665555553
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1.1e-22 Score=177.13 Aligned_cols=266 Identities=16% Similarity=0.117 Sum_probs=194.7
Q ss_pred cEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCeEeccccccccccchhhhcCCccceEee
Q 039007 39 RTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLIL 117 (360)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 117 (360)
++++.+++.+... |. .-.++|++|+++++.++.++ ..+..+++|++|++++|...+..+..+..+++|++|++
T Consensus 14 ~~~~c~~~~l~~i----p~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQAV----PV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSSC----CT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCcccC----Cc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 5778877765322 21 22468999999999999665 46899999999999998544444778899999999999
Q ss_pred ccccCcCcC-CccccccccccEEEEeccccccc-cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCc
Q 039007 118 RGCLKLEEL-PKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLI 195 (360)
Q Consensus 118 ~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 195 (360)
++|.....+ |..+..+++|+.|++++|.+... +..+..+++|++|++++|......+..++.+++|+.|++++|....
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 998645555 67789999999999999998876 5678899999999999986554444568889999999999996544
Q ss_pred ccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEeccc
Q 039007 196 SLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIED 275 (360)
Q Consensus 196 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 275 (360)
..+..+..+++|++|++++|..... .+.....+++|+.|++++|......+..+ ..+++|++|++++
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHV-----------HPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRALQYLRLND 234 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEE-----------CTTTTTTCTTCCEEECCSSCCSCCCHHHH--TTCTTCCEEECCS
T ss_pred cCHHHhcCccccCEEECCCCccccc-----------CHhHccCcccccEeeCCCCcCCcCCHHHc--ccCcccCEEeccC
Confidence 3344588899999999999864432 12334567789999999887555444445 7888999999998
Q ss_pred CCCcccccccccCccccccccccccccccCCCccccC--CCccceecccCC
Q 039007 276 CPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHH--LTTLKTLSIKEC 324 (360)
Q Consensus 276 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~c 324 (360)
|....+.+. ..-...++.+....+......|..+.. +..++..++.+|
T Consensus 235 N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 235 NPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp SCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred CCccCCCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 854443322 111234566666665555555655433 456666677776
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=2.4e-25 Score=207.19 Aligned_cols=305 Identities=16% Similarity=0.124 Sum_probs=165.9
Q ss_pred CcceEEEeeecccccc---chhhhhccCccccEEEEeccCCCCcccchHHHhhcCC----CccEEEEeCCCCc-----cc
Q 039007 11 KRVRHLSFVSASASRN---DFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQ----FLRVLDLDDSTIE-----VL 78 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~-----~~ 78 (360)
++++.|++.++.+... .+...+..+++|++|++++|.+. ...+...+..++ +|++|++++|.++ .+
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH--HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC--hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 5788888888887753 34566777888888888888763 223334444555 6888888888876 34
Q ss_pred CcCCCCCCCcCeEeccccccccccchhhh-----cCCccceEeeccccCcCc----CCccccccccccEEEEeccccccc
Q 039007 79 PREIGNLKHMRYLDLSRYCQIKKLPNSIC-----ELQSLQTLILRGCLKLEE----LPKDIRYLVSLRMFVVTTKQKSLQ 149 (360)
Q Consensus 79 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~ 149 (360)
+..+..+++|++|++++|......+..+. ..++|++|++++|..... ++..+..+++|++|++++|.+...
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 66778888888888887753332232222 245677777777654432 234445566777777776665432
Q ss_pred -cccCC-----CCCCCcEeeccCCCchh----hhHhhhcCCCCccEEEeccCCCCc------------------------
Q 039007 150 -ESGIA-----CLSSLRSLIISHCWNLE----YLFEHIGQLSGLRSLILVDCPSLI------------------------ 195 (360)
Q Consensus 150 -~~~~~-----~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~------------------------ 195 (360)
...+. ..++|+.|++++|.... .++..+..+++|++|++++|....
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 11111 23455555555553322 234444445555555555553221
Q ss_pred -----c----cCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCC----chhhhhc
Q 039007 196 -----S----LPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLD----LPQWLLQ 262 (360)
Q Consensus 196 -----~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~ 262 (360)
. ++..+..+++|++|++++|....... ..+. .......++|+.|++++|..... ++..+
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-~~l~-----~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-- 337 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA-RLLC-----ETLLEPGCQLESLWVKSCSFTAACCSHFSSVL-- 337 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH-HHHH-----HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH--
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH-HHHH-----HHhccCCccceeeEcCCCCCchHHHHHHHHHH--
Confidence 1 23333334444444444442111000 0000 00011223666666666654332 23333
Q ss_pred CCCCCCcEEecccCCCccccccccc----C-cccccccccccccccc----CCCccccCCCccceecccCCh
Q 039007 263 GSTKTLQFLGIEDCPNFMALQGSLK----D-LEALETLLISACRKLS----SLPEDIHHLTTLKTLSIKECP 325 (360)
Q Consensus 263 ~~~~~L~~L~L~~~~~~~~~~~~~~----~-l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~c~ 325 (360)
..+++|++|++++|......+..+. . .++|++|++++|.+.. .++..+..+++|++|++++|+
T Consensus 338 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 3556777777777643322222222 1 5577777777776553 455556667777777777774
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=2.9e-22 Score=185.36 Aligned_cols=275 Identities=19% Similarity=0.208 Sum_probs=163.9
Q ss_pred CcceEEEeeeccccccchhhhhccC-ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcC
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDL-RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMR 89 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 89 (360)
++++.|++.+|.+.. +... ++|++|++++|.+.. ++ .+.++++|++|++++|.++.+|..+ .+|+
T Consensus 111 ~~L~~L~l~~n~l~~------l~~~~~~L~~L~L~~n~l~~----lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~ 176 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA------LSDLPPLLEYLGVSNNQLEK----LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLE 176 (454)
T ss_dssp TTCCEEECCSSCCSC------CCSCCTTCCEEECCSSCCSS----CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCC
T ss_pred CCCcEEECCCCccCc------ccCCCCCCCEEECcCCCCCC----Cc-ccCCCCCCCEEECCCCcCcccCCCc---cccc
Confidence 445555555554443 1122 578888888887632 33 3778888888888888887776543 4788
Q ss_pred eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007 90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN 169 (360)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (360)
+|++++| .+..+| .++.+++|+.|++++|... .+|... ++|+.|++++|.+..++ .+..+++|+.|++++|..
T Consensus 177 ~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~-~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 177 FIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp EEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred EEECcCC-cCCcCc-cccCCCCCCEEECCCCcCC-cCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcC
Confidence 8888877 455566 4778888888888877433 355432 47788888888777665 477788888888887643
Q ss_pred hhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCcccccc------ccccCCCCCCCCCCCC-Ccc
Q 039007 170 LEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLN------IEMEGEGSHHDRDNTR-THL 242 (360)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~L 242 (360)
+.+|. .+++|+.|++++|.. ..+|.. +++|++|++++|........ ..+.+. ........ ++|
T Consensus 250 -~~l~~---~~~~L~~L~l~~N~l-~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N--~l~~i~~~~~~L 319 (454)
T 1jl5_A 250 -KTLPD---LPPSLEALNVRDNYL-TDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSN--EIRSLCDLPPSL 319 (454)
T ss_dssp -SSCCS---CCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSS--CCSEECCCCTTC
T ss_pred -Ccccc---cccccCEEECCCCcc-cccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCC--cCCcccCCcCcC
Confidence 33332 246777777777643 334443 35677777766643321100 000000 00001112 478
Q ss_pred ceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCcccccccccccccccc--CCCccccCC-------
Q 039007 243 QKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLS--SLPEDIHHL------- 313 (360)
Q Consensus 243 ~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~------- 313 (360)
+.|++++|... .+|. .+++|++|++++| .++.+|. .+++|++|++++|++.+ .+|..+..+
T Consensus 320 ~~L~Ls~N~l~-~lp~-----~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~ 389 (454)
T 1jl5_A 320 EELNVSNNKLI-ELPA-----LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389 (454)
T ss_dssp CEEECCSSCCS-CCCC-----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred CEEECCCCccc-cccc-----cCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence 88888887643 3443 3578888888887 4556666 46788888888888776 677777666
Q ss_pred ------CccceecccCChh
Q 039007 314 ------TTLKTLSIKECPA 326 (360)
Q Consensus 314 ------~~L~~L~l~~c~~ 326 (360)
++|++|++++|+-
T Consensus 390 ~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 390 EVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp -------------------
T ss_pred ccccccCcCCEEECCCCcC
Confidence 7788888888753
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=1.1e-21 Score=181.57 Aligned_cols=275 Identities=20% Similarity=0.213 Sum_probs=179.8
Q ss_pred CCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCC
Q 039007 8 SIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKH 87 (360)
Q Consensus 8 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 87 (360)
.+|++++.|++.++.+++ ++. .+++|++|++++|.+...... .++|++|++++|.++.+| .+..+++
T Consensus 88 ~~~~~L~~L~l~~n~l~~--lp~---~~~~L~~L~l~~n~l~~l~~~-------~~~L~~L~L~~n~l~~lp-~~~~l~~ 154 (454)
T 1jl5_A 88 ELPPHLESLVASCNSLTE--LPE---LPQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLP-ELQNSSF 154 (454)
T ss_dssp SCCTTCSEEECCSSCCSS--CCC---CCTTCCEEECCSSCCSCCCSC-------CTTCCEEECCSSCCSSCC-CCTTCTT
T ss_pred CCcCCCCEEEccCCcCCc--ccc---ccCCCcEEECCCCccCcccCC-------CCCCCEEECcCCCCCCCc-ccCCCCC
Confidence 366788888888887776 222 247888888888876422111 157889999988888877 5888889
Q ss_pred cCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCC
Q 039007 88 MRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHC 167 (360)
Q Consensus 88 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 167 (360)
|++|++++| .++.+|..+ .+|++|++++|... .+| .++.+++|+.|++++|.+...+.. .++|+.|++++|
T Consensus 155 L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n 225 (454)
T 1jl5_A 155 LKIIDVDNN-SLKKLPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNN 225 (454)
T ss_dssp CCEEECCSS-CCSCCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSS
T ss_pred CCEEECCCC-cCcccCCCc---ccccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCC
Confidence 999999887 455566533 58889999887444 466 588888999999998888765432 258889999887
Q ss_pred CchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccc------cccCCCCCCCCCCCCCc
Q 039007 168 WNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNI------EMEGEGSHHDRDNTRTH 241 (360)
Q Consensus 168 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 241 (360)
.. +.+| .++.+++|+.|++++|.. ..+|.. +++|++|++++|......... .+.+- .........++
T Consensus 226 ~l-~~lp-~~~~l~~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N-~l~~l~~~~~~ 298 (454)
T 1jl5_A 226 IL-EELP-ELQNLPFLTTIYADNNLL-KTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSEN-IFSGLSELPPN 298 (454)
T ss_dssp CC-SSCC-CCTTCTTCCEEECCSSCC-SSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSEESCCCTT
T ss_pred cC-Cccc-ccCCCCCCCEEECCCCcC-Cccccc---ccccCEEECCCCcccccCcccCcCCEEECcCC-ccCcccCcCCc
Confidence 44 4566 377889999999988854 345543 478999999887643311100 00000 00000001134
Q ss_pred cceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecc
Q 039007 242 LQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSI 321 (360)
Q Consensus 242 L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 321 (360)
|+.|++++|... .++ ...++|++|++++|. ++.+|.. +++|++|++++|.+. .+|. .+++|++|++
T Consensus 299 L~~L~l~~N~l~-~i~-----~~~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L 364 (454)
T 1jl5_A 299 LYYLNASSNEIR-SLC-----DLPPSLEELNVSNNK-LIELPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHV 364 (454)
T ss_dssp CCEEECCSSCCS-EEC-----CCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred CCEEECcCCcCC-ccc-----CCcCcCCEEECCCCc-ccccccc---CCcCCEEECCCCccc-cccc---hhhhccEEEC
Confidence 455555544322 111 122578888888774 4445543 578888888888744 5666 3688999999
Q ss_pred cCCh
Q 039007 322 KECP 325 (360)
Q Consensus 322 ~~c~ 325 (360)
++|+
T Consensus 365 ~~N~ 368 (454)
T 1jl5_A 365 EYNP 368 (454)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8884
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=9.6e-24 Score=186.59 Aligned_cols=243 Identities=13% Similarity=0.082 Sum_probs=187.2
Q ss_pred CCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCc
Q 039007 9 IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHM 88 (360)
Q Consensus 9 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L 88 (360)
.+++++.|++.++.+.. ..+..+.++++|++|++++|.+. ...+ +..+++|++|++++|.++.++. +++|
T Consensus 32 ~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~---~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L 101 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLY---ETLD--LESLSTLRTLDLNNNYVQELLV----GPSI 101 (317)
T ss_dssp TGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCE---EEEE--ETTCTTCCEEECCSSEEEEEEE----CTTC
T ss_pred cCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCC---cchh--hhhcCCCCEEECcCCccccccC----CCCc
Confidence 35689999999999988 56678999999999999999873 2332 8899999999999999886653 3899
Q ss_pred CeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccc-cccC-CCCCCCcEeeccC
Q 039007 89 RYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGI-ACLSSLRSLIISH 166 (360)
Q Consensus 89 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~-~~l~~L~~L~l~~ 166 (360)
++|++++|. +..++. ..+++|+.|++++|...+..+..++.+++|+.|++++|.+... +..+ ..+++|+.|++++
T Consensus 102 ~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 102 ETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 999999984 444443 2378999999999866655556788999999999999998765 3444 4789999999999
Q ss_pred CCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEE
Q 039007 167 CWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLF 246 (360)
Q Consensus 167 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 246 (360)
|.. +.++. ...+++|++|++++|.. ..++..+..+++|+.|++++|.
T Consensus 179 N~l-~~~~~-~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~L~~N~------------------------------ 225 (317)
T 3o53_A 179 NFI-YDVKG-QVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNK------------------------------ 225 (317)
T ss_dssp SCC-CEEEC-CCCCTTCCEEECCSSCC-CEECGGGGGGTTCSEEECTTSC------------------------------
T ss_pred CcC-ccccc-ccccccCCEEECCCCcC-CcchhhhcccCcccEEECcCCc------------------------------
Confidence 854 33332 34589999999999854 4566667777777887777653
Q ss_pred ecCccCCCCchhhhhcCCCCCCcEEecccCCCc-ccccccccCccccccccccccccccC
Q 039007 247 VSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNF-MALQGSLKDLEALETLLISACRKLSS 305 (360)
Q Consensus 247 L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~ 305 (360)
+..+|..+ ..+++|++|++++|... ..++..+..+++|+.+++.++..++.
T Consensus 226 ------l~~l~~~~--~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 226 ------LVLIEKAL--RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp ------CCEECTTC--CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred ------ccchhhHh--hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 22344444 66788888888888666 46777788889999999987765543
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=1.6e-21 Score=186.05 Aligned_cols=256 Identities=22% Similarity=0.216 Sum_probs=185.9
Q ss_pred cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeE
Q 039007 12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYL 91 (360)
Q Consensus 12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 91 (360)
.++.|++.++.+.. ++..+. ++|++|++++|.+.. ++. .+++|++|++++|.++.+|. .+++|++|
T Consensus 41 ~l~~L~ls~n~L~~--lp~~l~--~~L~~L~L~~N~l~~----lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 41 GNAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTS----LPA---LPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp CCCEEECCSSCCSC--CCSCCC--TTCSEEEECSCCCSC----CCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CCcEEEecCCCcCc--cChhhC--CCCcEEEecCCCCCC----CCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 57888888888775 333343 788999999888642 222 46788999999988888776 66888999
Q ss_pred eccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchh
Q 039007 92 DLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLE 171 (360)
Q Consensus 92 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 171 (360)
++++| .+..+|. .+++|+.|++++|. +..+|.. +++|++|++++|.+..++. .+++|+.|++.+|. ++
T Consensus 107 ~Ls~N-~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~-l~ 174 (622)
T 3g06_A 107 SIFSN-PLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ-LT 174 (622)
T ss_dssp EECSC-CCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CS
T ss_pred ECcCC-cCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC-CC
Confidence 99887 5556665 56788889998874 4456654 4788899998888776653 35678888888864 34
Q ss_pred hhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCcc
Q 039007 172 YLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLK 251 (360)
Q Consensus 172 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 251 (360)
.++ ..+++|+.|++++|.. ..+|.. .++|+.|++.+|...... ...++|+.|++++|.
T Consensus 175 ~l~---~~~~~L~~L~Ls~N~l-~~l~~~---~~~L~~L~L~~N~l~~l~---------------~~~~~L~~L~Ls~N~ 232 (622)
T 3g06_A 175 SLP---MLPSGLQELSVSDNQL-ASLPTL---PSELYKLWAYNNRLTSLP---------------ALPSGLKELIVSGNR 232 (622)
T ss_dssp CCC---CCCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSSCC---------------CCCTTCCEEECCSSC
T ss_pred CCc---ccCCCCcEEECCCCCC-CCCCCc---cchhhEEECcCCcccccC---------------CCCCCCCEEEccCCc
Confidence 444 4568889999988753 445543 478888888887543211 123678899998875
Q ss_pred CCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCChh
Q 039007 252 QLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECPA 326 (360)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 326 (360)
+..+| ..+++|++|++++| .++.+|. .+++|+.|++++|.+. .+|..+..+++|+.|++++|+-
T Consensus 233 -L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 233 -LTSLP-----VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -CSCCC-----CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred -cCcCC-----CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence 44455 45688999999988 5566665 5678899999988755 7788888889999999988853
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=8.3e-24 Score=186.58 Aligned_cols=245 Identities=17% Similarity=0.130 Sum_probs=133.3
Q ss_pred hccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc--ccCcCCC-------CCCCcCeEecccccccccc
Q 039007 32 LSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE--VLPREIG-------NLKHMRYLDLSRYCQIKKL 102 (360)
Q Consensus 32 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~-------~l~~L~~L~l~~~~~~~~~ 102 (360)
+...++|+.|++++|.+ .....+ ... |+.|+++++.+. .+|..+. .+++|++|++++|...+.+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~----~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQF----TDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHH----HHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred EccCCCceeEeeccccc-ccHHHH----HHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence 34455566666666654 112112 111 556666666553 3444333 5667777777766544455
Q ss_pred chhh--hcCCccceEeeccccCcCcCCcccccc-----ccccEEEEecccccccc-ccCCCCCCCcEeeccCCCchhh--
Q 039007 103 PNSI--CELQSLQTLILRGCLKLEELPKDIRYL-----VSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCWNLEY-- 172 (360)
Q Consensus 103 ~~~~--~~l~~L~~L~l~~~~~~~~~p~~~~~l-----~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-- 172 (360)
|..+ ..+++|++|++++|.+.+. |..++.+ ++|++|++++|.+...+ ..+..+++|+.|++++|...+.
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 112 PPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 5544 5667777777776644433 5555555 66777777777666553 5566677777777776654332
Q ss_pred hHhhh--cCCCCccEEEeccCCCCc--ccC-cccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEe
Q 039007 173 LFEHI--GQLSGLRSLILVDCPSLI--SLP-SAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFV 247 (360)
Q Consensus 173 ~~~~l--~~l~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 247 (360)
++..+ ..+++|++|++++|.... .++ ..+..+++|++|++++|.
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~------------------------------- 239 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS------------------------------- 239 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-------------------------------
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-------------------------------
Confidence 23333 566666666666664321 111 122345555666555543
Q ss_pred cCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccccCCCccceecccCCh
Q 039007 248 SGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKECP 325 (360)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 325 (360)
.....+.... ..+++|++|++++|. ++.+|..+. ++|++|++++|++. .+|. +..+++|++|++++|+
T Consensus 240 ----l~~~~~~~~~-~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~-~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 240 ----LRDAAGAPSC-DWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ----CCSSCCCSCC-CCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCC-SCCC-TTTSCEEEEEECTTCT
T ss_pred ----CCcccchhhh-hhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCC-CChh-HhhCCCCCEEeccCCC
Confidence 2222211110 334666666666663 345555444 56666666666543 3344 5566667777666664
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=7.8e-23 Score=180.34 Aligned_cols=241 Identities=14% Similarity=0.082 Sum_probs=169.7
Q ss_pred ceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhh-------cCCCccEEEEeCCCCc-ccCcCC--
Q 039007 13 VRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCIS-------KSQFLRVLDLDDSTIE-VLPREI-- 82 (360)
Q Consensus 13 l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~-~~~~~~-- 82 (360)
++.|++.++.+ .++..+... |++|++++|.+. ...++..+. ++++|++|++++|.++ .+|..+
T Consensus 45 L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~--~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 45 LEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVR--AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp CTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEE--EEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred ceeEeeccccc---ccHHHHHHH--Hhhccccccccc--CCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34444445555 123334333 888888888763 112333333 6899999999999998 778776
Q ss_pred CCCCCcCeEeccccccccccchhhhcC-----CccceEeeccccCcCcCCccccccccccEEEEeccccccc---cccC-
Q 039007 83 GNLKHMRYLDLSRYCQIKKLPNSICEL-----QSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ---ESGI- 153 (360)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~---~~~~- 153 (360)
..+++|++|++++|. ++..|..+..+ ++|++|++++|.+.+..|..++.+++|++|++++|.+... +..+
T Consensus 118 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 899999999999985 44447777776 9999999999876665568899999999999999986532 2333
Q ss_pred -CCCCCCcEeeccCCCchh--hhH-hhhcCCCCccEEEeccCCCCcccC-cccCCCCCCCEEeecCCcCccccccccccC
Q 039007 154 -ACLSSLRSLIISHCWNLE--YLF-EHIGQLSGLRSLILVDCPSLISLP-SAVKCLSSSETLILIDCKSLNLNLNIEMEG 228 (360)
Q Consensus 154 -~~l~~L~~L~l~~~~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 228 (360)
..+++|++|++++|.... .++ ..+..+++|+.|++++|......| ..+..+++|++|++++|..
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l----------- 265 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL----------- 265 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-----------
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc-----------
Confidence 889999999999986542 333 344678999999999997655443 3344556677776666532
Q ss_pred CCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccc
Q 039007 229 EGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKL 303 (360)
Q Consensus 229 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 303 (360)
..+|..+ . ++|++|++++| .++.+|. +..+++|++|++++|++.
T Consensus 266 -------------------------~~ip~~~--~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 266 -------------------------KQVPKGL--P--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -------------------------SSCCSSC--C--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred -------------------------Chhhhhc--c--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCCC
Confidence 2344333 1 66777777776 4455555 777788888888887754
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1e-22 Score=190.24 Aligned_cols=234 Identities=13% Similarity=0.055 Sum_probs=124.5
Q ss_pred ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007 36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL 115 (360)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 115 (360)
++|++|++++|.+ ....+..|..+++|++|++++|.++..++ +..+++|++|++++| .++.+|. .++|+.|
T Consensus 34 ~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPL---SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCC---CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred CCccEEEeeCCcC---CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence 3677777777765 33444556777777777777777664433 667777777777766 3444332 2667777
Q ss_pred eeccccCcCcCCccccccccccEEEEeccccccc-cccCCCCCCCcEeeccCCCchhhhHhhhc-CCCCccEEEeccCCC
Q 039007 116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLIISHCWNLEYLFEHIG-QLSGLRSLILVDCPS 193 (360)
Q Consensus 116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~ 193 (360)
++++|.+.+..+ ..+++|+.|++++|.+... +..++.+++|+.|++++|......+..+. .+++|+.|++++|..
T Consensus 105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 777664433221 2345666666666666554 34555666666666666654444444443 466666666666643
Q ss_pred CcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEec
Q 039007 194 LISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGI 273 (360)
Q Consensus 194 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L 273 (360)
. .++. ...+++|++|++++|...... .....+++|+.|++++|... .+|..+ ..+++|+.|++
T Consensus 182 ~-~~~~-~~~l~~L~~L~Ls~N~l~~~~------------~~~~~l~~L~~L~Ls~N~l~-~lp~~l--~~l~~L~~L~l 244 (487)
T 3oja_A 182 Y-DVKG-QVVFAKLKTLDLSSNKLAFMG------------PEFQSAAGVTWISLRNNKLV-LIEKAL--RFSQNLEHFDL 244 (487)
T ss_dssp C-EEEC-CCCCTTCCEEECCSSCCCEEC------------GGGGGGTTCSEEECTTSCCC-EECTTC--CCCTTCCEEEC
T ss_pred c-cccc-cccCCCCCEEECCCCCCCCCC------------HhHcCCCCccEEEecCCcCc-ccchhh--ccCCCCCEEEc
Confidence 2 2222 223556666666555422211 11223344555555554422 344333 44455555555
Q ss_pred ccCCCc-ccccccccCcccccccccc
Q 039007 274 EDCPNF-MALQGSLKDLEALETLLIS 298 (360)
Q Consensus 274 ~~~~~~-~~~~~~~~~l~~L~~L~l~ 298 (360)
++|... ..+|..+..++.|+.+++.
T Consensus 245 ~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCcCcchHHHHHhCCCCcEEecc
Confidence 554333 1334444444455544444
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=1.8e-23 Score=200.58 Aligned_cols=314 Identities=12% Similarity=0.077 Sum_probs=183.7
Q ss_pred CCcceEEEeeecc-ccccchhhhhccCccccEEEEeccCCCCc-ccchHHHhhcCCCccEEEEeCCCCc-----ccCcCC
Q 039007 10 PKRVRHLSFVSAS-ASRNDFSSLLSDLRRVRTILFSINDENTS-ESFFTSCISKSQFLRVLDLDDSTIE-----VLPREI 82 (360)
Q Consensus 10 ~~~l~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~ 82 (360)
|.+++.|++.++. +....+......|++|++|++++|.+... ..+++..+..+++|++|+++++.++ .++..+
T Consensus 137 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp GGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred cccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 3458889988765 33323445556888999999988875311 2236666778888888888888765 334445
Q ss_pred CCCCCcCeEeccccccccccchhhhcCCccceEeeccccC--------------------------cCcCCccccccccc
Q 039007 83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLK--------------------------LEELPKDIRYLVSL 136 (360)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--------------------------~~~~p~~~~~l~~L 136 (360)
..+++|++|++++| ....++..+..+++|++|+++.+.. ...+|..+..+++|
T Consensus 217 ~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 217 RNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295 (592)
T ss_dssp HHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred hhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence 67788888888876 3445666677777777777763211 12234445566677
Q ss_pred cEEEEeccccccc--cccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEecc----------CCCCc--ccCcccC
Q 039007 137 RMFVVTTKQKSLQ--ESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVD----------CPSLI--SLPSAVK 202 (360)
Q Consensus 137 ~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~----------~~~~~--~~~~~~~ 202 (360)
++|++++|.+... ...+..+++|+.|++.++.....++.....+++|++|++++ |...+ .++....
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 7777777664322 12345666777776663322223444445567777777763 33322 1222233
Q ss_pred CCCCCCEEeecCCcCcccccccc------------ccC---CCC---------CCCCCCCCCccceEEecCccC-CCCch
Q 039007 203 CLSSSETLILIDCKSLNLNLNIE------------MEG---EGS---------HHDRDNTRTHLQKLFVSGLKQ-LLDLP 257 (360)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~~~~------------~~~---~~~---------~~~~~~~~~~L~~L~L~~~~~-~~~~~ 257 (360)
.+++|++|++.. ..+....... +.+ ... .......+++|+.|+++.|.. +.+..
T Consensus 376 ~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 376 GCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 456666666622 2111110000 000 000 000123356778888765432 22221
Q ss_pred hhhhcCCCCCCcEEecccCCCcc-cccccccCccccccccccccccccC-CCccccCCCccceecccCCh
Q 039007 258 QWLLQGSTKTLQFLGIEDCPNFM-ALQGSLKDLEALETLLISACRKLSS-LPEDIHHLTTLKTLSIKECP 325 (360)
Q Consensus 258 ~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~c~ 325 (360)
...+...+++|++|++++|.... .++..+.++++|++|+|++|++... ++..+..+++|++|++++|+
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 11222457888999888885443 4556667889999999999985432 44445678899999999997
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=4.7e-23 Score=197.70 Aligned_cols=311 Identities=12% Similarity=0.023 Sum_probs=192.2
Q ss_pred CCcceEEEeeeccccccchhhhhcc-Ccc-ccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcc-----cCcCC
Q 039007 10 PKRVRHLSFVSASASRNDFSSLLSD-LRR-VRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEV-----LPREI 82 (360)
Q Consensus 10 ~~~l~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~ 82 (360)
-++++.|++.++.+.+ .....+.. ++. |++|++++|. ......+.....+|++|++|++++|.++. ++..+
T Consensus 111 ~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSD-LDLDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp CTTCCEEEEESCBCCH-HHHHHHHHHHGGGCCEEEEESCE-EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred CCCCCeEEeeccEecH-HHHHHHHHhccccCcEEECcCCC-CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 3789999999998877 33334444 555 9999999886 22344566667799999999999998652 33345
Q ss_pred CCCCCcCeEeccccccc----cccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc-------------
Q 039007 83 GNLKHMRYLDLSRYCQI----KKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ------------- 145 (360)
Q Consensus 83 ~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~------------- 145 (360)
..+++|++|+++++... ..++..+.++++|+.|++++|... .+|..+..+++|+.|+++...
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 67899999999987543 244555678999999999997544 466667777777777776321
Q ss_pred --------------cccccccCCCCCCCcEeeccCCCchh-hhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEE
Q 039007 146 --------------KSLQESGIACLSSLRSLIISHCWNLE-YLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETL 210 (360)
Q Consensus 146 --------------~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 210 (360)
....+..+..+++|++|++++|.... .+...+..+++|+.|+++++.....++.....+++|++|
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 12223344556677777777765322 333445677777777777432223344444567888888
Q ss_pred eecC----------CcCccccccccccC---------------CCCCCC-CCCCCCccceEEecC---ccCCCCc-----
Q 039007 211 ILID----------CKSLNLNLNIEMEG---------------EGSHHD-RDNTRTHLQKLFVSG---LKQLLDL----- 256 (360)
Q Consensus 211 ~l~~----------~~~~~~~~~~~~~~---------------~~~~~~-~~~~~~~L~~L~L~~---~~~~~~~----- 256 (360)
++.+ |..+.......+.. .+.... ....+++|+.|++++ +..+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 8884 55444321111000 000000 011244566666652 2233332
Q ss_pred -hhhhhcCCCCCCcEEecccCCC-cc-ccc-ccccCcccccccccccccccc-CCCccccCCCccceecccCCh
Q 039007 257 -PQWLLQGSTKTLQFLGIEDCPN-FM-ALQ-GSLKDLEALETLLISACRKLS-SLPEDIHHLTTLKTLSIKECP 325 (360)
Q Consensus 257 -~~~~~~~~~~~L~~L~L~~~~~-~~-~~~-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~c~ 325 (360)
+... ..+++|++|++++|.. ++ ..+ .....+++|++|++++|++.. .++..+..+++|++|++++|+
T Consensus 428 ~~~~~--~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 428 VRSLL--IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHH--HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred HHHHH--HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 1222 4567777777765432 22 222 222347788888888887554 345556778999999999996
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=5.6e-21 Score=182.34 Aligned_cols=251 Identities=21% Similarity=0.158 Sum_probs=197.1
Q ss_pred ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCC
Q 039007 4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIG 83 (360)
Q Consensus 4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 83 (360)
..+..+|++++.|++.+|.+.. ++. .+++|++|++++|.+.. ++. .+++|++|++++|.++.+|.
T Consensus 54 ~lp~~l~~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~N~l~~----lp~---~l~~L~~L~Ls~N~l~~l~~--- 118 (622)
T 3g06_A 54 TLPDCLPAHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLTS----LPV---LPPGLLELSIFSNPLTHLPA--- 118 (622)
T ss_dssp CCCSCCCTTCSEEEECSCCCSC--CCC---CCTTCCEEEECSCCCSC----CCC---CCTTCCEEEECSCCCCCCCC---
T ss_pred ccChhhCCCCcEEEecCCCCCC--CCC---cCCCCCEEEcCCCcCCc----CCC---CCCCCCEEECcCCcCCCCCC---
Confidence 3456677899999999999876 333 67899999999998742 222 67899999999999998876
Q ss_pred CCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEee
Q 039007 84 NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLI 163 (360)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 163 (360)
.+++|++|++++| .+..+|.. +++|+.|++++|. +..+|. .+++|+.|++++|.+..++ ..+++|+.|+
T Consensus 119 ~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~ 187 (622)
T 3g06_A 119 LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELS 187 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEE
T ss_pred CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEE
Confidence 5689999999988 56667764 4899999999984 445664 3578999999999998876 5678999999
Q ss_pred ccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccc
Q 039007 164 ISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQ 243 (360)
Q Consensus 164 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 243 (360)
+++|.. +.++. .+++|+.|++++|. +..+|.. +++|++|++++|..... ...+++|+
T Consensus 188 Ls~N~l-~~l~~---~~~~L~~L~L~~N~-l~~l~~~---~~~L~~L~Ls~N~L~~l---------------p~~l~~L~ 244 (622)
T 3g06_A 188 VSDNQL-ASLPT---LPSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSL---------------PVLPSELK 244 (622)
T ss_dssp CCSSCC-SCCCC---CCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSCC---------------CCCCTTCC
T ss_pred CCCCCC-CCCCC---ccchhhEEECcCCc-ccccCCC---CCCCCEEEccCCccCcC---------------CCCCCcCc
Confidence 999853 44443 35899999999984 4456643 58999999999853321 13457899
Q ss_pred eEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccccccccccccccccCCCccc
Q 039007 244 KLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLSSLPEDI 310 (360)
Q Consensus 244 ~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 310 (360)
.|++++|. +..+|. .+++|++|++++| .++.+|..+.++++|+.|++++|++.+..+..+
T Consensus 245 ~L~Ls~N~-L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 245 ELMVSGNR-LTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp EEECCSSC-CSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred EEECCCCC-CCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 99999986 446664 5689999999998 566889899999999999999999776555433
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.3e-21 Score=182.62 Aligned_cols=244 Identities=13% Similarity=0.083 Sum_probs=194.1
Q ss_pred hHHHhhcC----CCccEEEEeCCCCcccC-cCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcc
Q 039007 55 FTSCISKS----QFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKD 129 (360)
Q Consensus 55 ~~~~~~~l----~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~ 129 (360)
++..+..+ ++|++|++++|.++.++ ..+..+++|++|++++|. +...++ +..+++|+.|++++|.+ ..+|
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-- 96 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYV-QELL-- 96 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSEE-EEEE--
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCcC-CCCC--
Confidence 44444444 48999999999999654 679999999999999985 444444 88999999999999843 3333
Q ss_pred ccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccC-CCCCCC
Q 039007 130 IRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVK-CLSSSE 208 (360)
Q Consensus 130 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~ 208 (360)
..++|+.|++++|.+...+. ..+++|+.|++++|......+..++.+++|+.|++++|......|..+. .+++|+
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred --CCCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 34899999999999887643 3568999999999876666677788899999999999977766666665 789999
Q ss_pred EEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccC
Q 039007 209 TLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKD 288 (360)
Q Consensus 209 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 288 (360)
+|++++|...... ....+++|+.|+|++|... .++..+ ..+++|+.|++++| .+..+|..+..
T Consensus 173 ~L~Ls~N~l~~~~-------------~~~~l~~L~~L~Ls~N~l~-~~~~~~--~~l~~L~~L~Ls~N-~l~~lp~~l~~ 235 (487)
T 3oja_A 173 HLNLQYNFIYDVK-------------GQVVFAKLKTLDLSSNKLA-FMGPEF--QSAAGVTWISLRNN-KLVLIEKALRF 235 (487)
T ss_dssp EEECTTSCCCEEE-------------CCCCCTTCCEEECCSSCCC-EECGGG--GGGTTCSEEECTTS-CCCEECTTCCC
T ss_pred EEecCCCcccccc-------------ccccCCCCCEEECCCCCCC-CCCHhH--cCCCCccEEEecCC-cCcccchhhcc
Confidence 9999998754321 1235789999999998754 565555 68899999999998 56678888999
Q ss_pred ccccccccccccccc-cCCCccccCCCccceecccCC
Q 039007 289 LEALETLLISACRKL-SSLPEDIHHLTTLKTLSIKEC 324 (360)
Q Consensus 289 l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~c 324 (360)
+++|+.|++++|++. ..+|..+..++.|+.+.+..+
T Consensus 236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence 999999999999977 456777888889988888633
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=1.2e-20 Score=163.30 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=60.0
Q ss_pred CCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCC
Q 039007 8 SIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLK 86 (360)
Q Consensus 8 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~ 86 (360)
.+|++++.|++.++.+.. .....+.++++|++|++++|.+ ....+..+.++++|++|++++|.++.++ ..+..++
T Consensus 25 ~l~~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp SSCTTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCCCCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcC---CccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 344445555555554444 2223444555555555555443 2222233444555555555555544322 3344455
Q ss_pred CcCeEeccccccccccchhhhcCCccceEeeccccCcC-cCCccccccccccEEEEeccccc
Q 039007 87 HMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE-ELPKDIRYLVSLRMFVVTTKQKS 147 (360)
Q Consensus 87 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~ 147 (360)
+|++|++++|......+..+..+++|++|++++|.... .+|..++.+++|+.|++++|.+.
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 55555554442222112234444555555554443322 23444444444555544444443
No 72
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.8e-21 Score=173.51 Aligned_cols=254 Identities=19% Similarity=0.095 Sum_probs=167.8
Q ss_pred ccccEEEEeccCCCCcccchHHHhhcC--CCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccc-cchhhhcCCcc
Q 039007 36 RRVRTILFSINDENTSESFFTSCISKS--QFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKK-LPNSICELQSL 112 (360)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L 112 (360)
..++.++++++.+. +..+..+ +.++.|+++++.+...+..+..+++|++|++++|..... ++..+..+++|
T Consensus 47 ~~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TTSSEEECTTCBCC------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hhheeeccccccCC------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 34788888877652 3445555 788899998888876556677788999999988854433 66777888999
Q ss_pred ceEeeccccCcCcCCccccccccccEEEEecc-cccc--ccccCCCCCCCcEeeccCC-Cchh-hhHhhhcCCC-CccEE
Q 039007 113 QTLILRGCLKLEELPKDIRYLVSLRMFVVTTK-QKSL--QESGIACLSSLRSLIISHC-WNLE-YLFEHIGQLS-GLRSL 186 (360)
Q Consensus 113 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~-~~~~--~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~l~-~L~~L 186 (360)
++|++++|...+..|..+..+++|++|++++| .+.. .+..+..+++|++|++++| .... .++..+..++ +|++|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 99999888655566667778888888888888 4543 3455677888888888887 4333 2566677788 88888
Q ss_pred EeccCC--CC-cccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchh-hhhc
Q 039007 187 ILVDCP--SL-ISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQ-WLLQ 262 (360)
Q Consensus 187 ~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~ 262 (360)
++++|. .. ..++..+..+++|++|++++|..++... ......+++|+.|++++|........ .+
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~----------~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-- 268 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC----------FQEFFQLNYLQHLSLSRCYDIIPETLLEL-- 268 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG----------GGGGGGCTTCCEEECTTCTTCCGGGGGGG--
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH----------HHHHhCCCCCCEeeCCCCCCCCHHHHHHH--
Confidence 888874 22 3456666678888888888876443221 11223446777777777753322111 22
Q ss_pred CCCCCCcEEecccCCCcccccccccCc-cccccccccccccccCCCcccc
Q 039007 263 GSTKTLQFLGIEDCPNFMALQGSLKDL-EALETLLISACRKLSSLPEDIH 311 (360)
Q Consensus 263 ~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~ 311 (360)
..+++|++|++++| +.. ..+..+ ..|..|++++|.+.+..|..+.
T Consensus 269 ~~~~~L~~L~l~~~--i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 269 GEIPTLKTLQVFGI--VPD--GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGCTTCCEEECTTS--SCT--TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred hcCCCCCEEeccCc--cCH--HHHHHHHhhCcceEEecccCccccCCccc
Confidence 45777777777777 221 112223 2366666777666555554443
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.6e-21 Score=173.77 Aligned_cols=256 Identities=17% Similarity=0.107 Sum_probs=191.7
Q ss_pred CCcceEEEeeeccccccchhhhhccC--ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-c-cCcCCCCC
Q 039007 10 PKRVRHLSFVSASASRNDFSSLLSDL--RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-V-LPREIGNL 85 (360)
Q Consensus 10 ~~~l~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~-~~~~~~~l 85 (360)
|..++++++.++.+.. ..+..+ ++++.|++++|.+. +..+. +..+++|++|++++|.+. . ++..+..+
T Consensus 46 ~~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~---~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 117 (336)
T 2ast_B 46 ESLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMD---QPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQC 117 (336)
T ss_dssp STTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEEC---SCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTB
T ss_pred chhheeeccccccCCH----HHHHhhhhccceEEEcCCcccc---ccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhC
Confidence 5568899998887664 345555 78999999998864 22222 557899999999999987 3 77788999
Q ss_pred CCcCeEeccccccccccchhhhcCCccceEeeccccCcC--cCCccccccccccEEEEecc-cccc--ccccCCCCC-CC
Q 039007 86 KHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLE--ELPKDIRYLVSLRMFVVTTK-QKSL--QESGIACLS-SL 159 (360)
Q Consensus 86 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~-~~~~--~~~~~~~l~-~L 159 (360)
++|++|++++|...+..+..++.+++|++|++++|.... .++..+..+++|++|++++| .+.. .+..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 999999999996555677788899999999999984443 36666888999999999999 7764 356678899 99
Q ss_pred cEeeccCCC-ch--hhhHhhhcCCCCccEEEeccCC-CCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCC
Q 039007 160 RSLIISHCW-NL--EYLFEHIGQLSGLRSLILVDCP-SLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDR 235 (360)
Q Consensus 160 ~~L~l~~~~-~~--~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 235 (360)
+.|++++|. .+ ..++..+..+++|+.|++++|. .....+..+..+++|++|++++|....... ...
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----------~~~ 267 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET----------LLE 267 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG----------GGG
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH----------HHH
Confidence 999999984 22 4667778889999999999998 444666778889999999999997443221 112
Q ss_pred CCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccC
Q 039007 236 DNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKD 288 (360)
Q Consensus 236 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 288 (360)
...+++|+.|++++| ........+ ...++.|++++|...+..|..++.
T Consensus 268 l~~~~~L~~L~l~~~-i~~~~~~~l----~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI-VPDGTLQLL----KEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGGCTTCCEEECTTS-SCTTCHHHH----HHHSTTSEESCCCSCCTTCSSCSS
T ss_pred HhcCCCCCEEeccCc-cCHHHHHHH----HhhCcceEEecccCccccCCcccc
Confidence 345789999999998 222222222 133666668877655566665544
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=8.8e-20 Score=154.47 Aligned_cols=174 Identities=11% Similarity=0.063 Sum_probs=93.4
Q ss_pred cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCC-CcccCc-CCCCCCCcCeEeccccccccccc-hhhhcCCccc
Q 039007 37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST-IEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQ 113 (360)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~ 113 (360)
+|++|++++|.+ ....+..|.++++|++|++++|. ++.++. .+..+++|++|++++|..++.++ ..+..+++|+
T Consensus 32 ~l~~L~l~~n~l---~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHL---RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCC---SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred cccEEEEeCCcc---eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 566666666654 23333345566666666666664 554443 45566666666666522344433 3455566666
Q ss_pred eEeeccccCcCcCCcccccccccc---EEEEecc-cccccc-ccCCCCCCCc-EeeccCCCchhhhHhhhcCCCCccEEE
Q 039007 114 TLILRGCLKLEELPKDIRYLVSLR---MFVVTTK-QKSLQE-SGIACLSSLR-SLIISHCWNLEYLFEHIGQLSGLRSLI 187 (360)
Q Consensus 114 ~L~l~~~~~~~~~p~~~~~l~~L~---~L~l~~~-~~~~~~-~~~~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~ 187 (360)
.|++++|.. ..+|. +..+++|+ .|++++| .+..++ ..+..+++|+ .|++++|... .++......++|+.|+
T Consensus 109 ~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 109 FLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY 185 (239)
T ss_dssp EEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEE
T ss_pred EEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEE
Confidence 666666533 33554 55555555 6666666 555443 3355666666 6666665332 3333322335666666
Q ss_pred eccCCCCcccC-cccCCC-CCCCEEeecCCc
Q 039007 188 LVDCPSLISLP-SAVKCL-SSSETLILIDCK 216 (360)
Q Consensus 188 l~~~~~~~~~~-~~~~~~-~~L~~L~l~~~~ 216 (360)
+++|+.++.++ ..+..+ ++|+.|+++++.
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 66664333433 345555 666666666654
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=1.9e-22 Score=193.48 Aligned_cols=129 Identities=14% Similarity=0.211 Sum_probs=82.6
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcc-----cCcCCCCC
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEV-----LPREIGNL 85 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~l 85 (360)
++++.|++.++.+.+..+......+++|++|++++|.. .....++..+.++++|++|++++|.++. ++.....+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG-FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE-EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC-CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 57999999999887744443334799999999998841 1233466667789999999999987552 33344577
Q ss_pred CCcCeEeccccc-cc--cccchhhhcCCccceEeeccccCcCcCCccccccccccEEE
Q 039007 86 KHMRYLDLSRYC-QI--KKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFV 140 (360)
Q Consensus 86 ~~L~~L~l~~~~-~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 140 (360)
++|++|++++|. .+ ..++..+..+++|+.|++++|...+.+|..+..+++|+.|+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 888899888774 11 11222234578888888877633222333333333444443
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=2.2e-20 Score=161.29 Aligned_cols=207 Identities=17% Similarity=0.105 Sum_probs=94.3
Q ss_pred CCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEE
Q 039007 62 SQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVV 141 (360)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 141 (360)
+++|+.|+++++.+..++ .+..+++|++|++++|. +..++ .+..+++|++|++++|...+..+..+..+++|+.|++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 344444444444443332 23444444444444442 22222 2444444444444444322222222344444444444
Q ss_pred ecccccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccc
Q 039007 142 TTKQKSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNL 220 (360)
Q Consensus 142 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 220 (360)
++|.+...+ ..+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|.....
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 444444332 2234444455555544432222222234455555555555533322223344555555555555432211
Q ss_pred cccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCccc
Q 039007 221 NLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEA 291 (360)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~ 291 (360)
.......+++|+.|++++|... +.++.|+.+++..|.....+|..++.++.
T Consensus 197 -----------~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 197 -----------PDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -----------CTTTTTTCTTCCEEECCSSCBC---------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -----------CHHHHhCCcCCCEEEccCCCcc---------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 1112334455666666665422 44567788888777666677777766554
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=2e-19 Score=155.12 Aligned_cols=196 Identities=18% Similarity=0.160 Sum_probs=91.7
Q ss_pred cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcCe
Q 039007 12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMRY 90 (360)
Q Consensus 12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~ 90 (360)
..+.+++.++.++. ++..+. +++++|++++|.+. ...+..|.++++|++|++++|.++.+|.. +..+++|++
T Consensus 17 ~~~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA--IPSNIP--ADTKKLDLQSNKLS---SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCS---CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCCEEEccCCCCCc--cCCCCC--CCCCEEECcCCCCC---eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 44555555555443 221121 34555666555542 22233455555566666655555544433 345555666
Q ss_pred Eeccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccc-cCCCCCCCcEeeccCCC
Q 039007 91 LDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQES-GIACLSSLRSLIISHCW 168 (360)
Q Consensus 91 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 168 (360)
|++++|. +..++ ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+...+. .+..+++|+.|++++|.
T Consensus 90 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 90 LWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp EECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 6655552 33332 334555555555555543333333334555555555555555544432 24455555555555543
Q ss_pred chhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007 169 NLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC 215 (360)
Q Consensus 169 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 215 (360)
.....+..+..+++|+.|++++|......+..+..+++|+.|+++++
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 32222223444555555555554322211222344444444444443
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=4.9e-22 Score=190.66 Aligned_cols=132 Identities=12% Similarity=0.088 Sum_probs=84.8
Q ss_pred CcceEEEeeeccccc-cc-------------hhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCC-CC
Q 039007 11 KRVRHLSFVSASASR-ND-------------FSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDS-TI 75 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~-~~-------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~ 75 (360)
++++.|++.++.... .. +......+++|++|+++++.+. +..+......+++|++|++++| .+
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT--DDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--HHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc--HHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 668888888764221 00 1233457888999999988753 3333333447889999999888 45
Q ss_pred c--ccCcCCCCCCCcCeEeccccccccccchhh----hcCCccceEeecccc-Cc--CcCCccccccccccEEEEecc
Q 039007 76 E--VLPREIGNLKHMRYLDLSRYCQIKKLPNSI----CELQSLQTLILRGCL-KL--EELPKDIRYLVSLRMFVVTTK 144 (360)
Q Consensus 76 ~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~-~~--~~~p~~~~~l~~L~~L~l~~~ 144 (360)
+ .++..+..+++|++|++++|...+..+..+ ..+++|+.|++++|. .. ..++..+..+++|+.|+++++
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 4 255555578899999998885333222223 367789999998874 01 111222345688999998877
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=3.5e-19 Score=155.06 Aligned_cols=200 Identities=19% Similarity=0.114 Sum_probs=96.4
Q ss_pred cCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEE
Q 039007 61 KSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFV 140 (360)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 140 (360)
+++++++++++++.++.+|..+. ++++.|++++|......+..+..+++|+.|++++|.+ ..++.. +.+++|+.|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCCEEE
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCCEEE
Confidence 34445555555555554444332 3455555555432222234445555555555555422 222221 4445555555
Q ss_pred EeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccc
Q 039007 141 VTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNL 220 (360)
Q Consensus 141 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 220 (360)
+++|.+..++..+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.....
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 55555554444445555555555555433222223445555555555555533322223344555555555555432211
Q ss_pred cccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCC
Q 039007 221 NLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPN 278 (360)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 278 (360)
....+..+++|+.|++++|. +..+|... ...+.|+.|++.+|..
T Consensus 164 -----------~~~~~~~l~~L~~L~L~~N~-l~~ip~~~--~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 -----------PAGLLNGLENLDTLLLQENS-LYTIPKGF--FGSHLLPFAFLHGNPW 207 (290)
T ss_dssp -----------CTTTTTTCTTCCEEECCSSC-CCCCCTTT--TTTCCCSEEECCSCCB
T ss_pred -----------CHHHhcCcCCCCEEECCCCc-CCccChhh--cccccCCeEEeCCCCc
Confidence 01112334455666665554 33555555 4556788888887754
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=1.5e-19 Score=156.54 Aligned_cols=127 Identities=25% Similarity=0.197 Sum_probs=52.0
Q ss_pred ccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEec
Q 039007 65 LRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTT 143 (360)
Q Consensus 65 L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 143 (360)
|++|++++|.++.++. .+..+++|++|++++|......+..+..+++|+.|++++|...+..+..+..+++|+.|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 4444444444443322 344444444444444422111122344444444444444433222223344444444444444
Q ss_pred ccccccc-ccCCCCCCCcEeeccCCCchh-hhHhhhcCCCCccEEEeccC
Q 039007 144 KQKSLQE-SGIACLSSLRSLIISHCWNLE-YLFEHIGQLSGLRSLILVDC 191 (360)
Q Consensus 144 ~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~ 191 (360)
|.+...+ ..+..+++|+.|++++|.... .+|..++.+++|+.|++++|
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 4443332 134444444444444443222 12334444455555555444
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=4.5e-19 Score=153.10 Aligned_cols=225 Identities=14% Similarity=0.072 Sum_probs=169.4
Q ss_pred cEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc
Q 039007 66 RVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ 145 (360)
Q Consensus 66 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 145 (360)
..+.+..+.+... .....+++|+.|+++++ .+..++. +..+++|+.|++++|... .+ ..+..+++|++|++++|.
T Consensus 22 ~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~-~i~~~~~-l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 22 IKANLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSVQG-IQYLPNVRYLALGGNKLH-DI-SALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHHTCSCTTSE-ECHHHHTTCCEEECTTS-CCCCCTT-GGGCTTCCEEECTTSCCC-CC-GGGTTCTTCCEEECTTSC
T ss_pred HHHHhcCcccccc-cccccccceeeeeeCCC-Ccccccc-cccCCCCcEEECCCCCCC-Cc-hhhcCCCCCCEEECCCCc
Confidence 3444555544433 23556889999999987 4555554 889999999999998544 34 478899999999999999
Q ss_pred ccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccc
Q 039007 146 KSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNI 224 (360)
Q Consensus 146 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 224 (360)
+...+ ..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|.....
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---- 172 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL---- 172 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc----
Confidence 88764 4578999999999999866555555578899999999999965544445578899999999999864321
Q ss_pred cccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCcccccccccccccccc
Q 039007 225 EMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLISACRKLS 304 (360)
Q Consensus 225 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 304 (360)
.......+++|+.|++++|......+..+ ..+++|++|++++|... ..+++|+.+++..|...+
T Consensus 173 -------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 173 -------PEGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGG
T ss_pred -------CHHHhcCCccCCEEECCCCcCCccCHHHH--hCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCC
Confidence 12234567899999999987665444444 78899999999998432 456789999999998888
Q ss_pred CCCccccCCCc
Q 039007 305 SLPEDIHHLTT 315 (360)
Q Consensus 305 ~~~~~~~~~~~ 315 (360)
.+|..++.++.
T Consensus 237 ~ip~~~~~~~~ 247 (272)
T 3rfs_A 237 VVRNSAGSVAP 247 (272)
T ss_dssp GBBCTTSCBCG
T ss_pred cccCcccccCC
Confidence 88887766554
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=3.9e-19 Score=156.47 Aligned_cols=177 Identities=12% Similarity=0.009 Sum_probs=104.3
Q ss_pred ccccEEEEeccCCCCcccchHH--HhhcCCCccEEEEeCCCCc-ccCcCC--CCCCCcCeEeccccccccccc----hhh
Q 039007 36 RRVRTILFSINDENTSESFFTS--CISKSQFLRVLDLDDSTIE-VLPREI--GNLKHMRYLDLSRYCQIKKLP----NSI 106 (360)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~-~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~ 106 (360)
..++.+.+.++.+. ...+.. .+..+++|++|++++|.+. ..|..+ ..+++|++|++++|...+..+ ..+
T Consensus 64 ~~l~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVP--AQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCCCB--HHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCCcCC--HHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34677777766543 111111 1223456888888888876 555555 777888888888775443332 233
Q ss_pred hcCCccceEeeccccCcCcCCccccccccccEEEEecccccc---c--cccCCCCCCCcEeeccCCCch--hhhHh-hhc
Q 039007 107 CELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSL---Q--ESGIACLSSLRSLIISHCWNL--EYLFE-HIG 178 (360)
Q Consensus 107 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~---~--~~~~~~l~~L~~L~l~~~~~~--~~~~~-~l~ 178 (360)
..+++|++|++++|...+..|..++.+++|++|++++|.+.. . ...+..+++|++|++++|... ...+. .++
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 467788888888776555555667777788888887776532 1 122356777777777776432 12222 235
Q ss_pred CCCCccEEEeccCCCCcccCcccCCC---CCCCEEeecC
Q 039007 179 QLSGLRSLILVDCPSLISLPSAVKCL---SSSETLILID 214 (360)
Q Consensus 179 ~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~ 214 (360)
.+++|++|++++|......|+.+..+ ++|++|++++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 66777777777775544445444333 3444444443
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.6e-19 Score=153.56 Aligned_cols=185 Identities=20% Similarity=0.172 Sum_probs=151.8
Q ss_pred ccccCCCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CC
Q 039007 4 SDCQSIPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EI 82 (360)
Q Consensus 4 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~ 82 (360)
..+..+|+.++.|++.++.+.. .....|.++++|++|++++|.+. ...+..|..+++|++|++++|.+..+|. .+
T Consensus 30 ~ip~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 105 (270)
T 2o6q_A 30 AIPSNIPADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWVTDNKLQALPIGVF 105 (270)
T ss_dssp SCCSCCCTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCS---CCCTTTTSSCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCCCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccC---eeChhhhcCCCCCCEEECCCCcCCcCCHhHc
Confidence 3456788899999999999887 55568999999999999999873 4445567899999999999999997765 57
Q ss_pred CCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCC-ccccccccccEEEEecccccccc-ccCCCCCCCc
Q 039007 83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLR 160 (360)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~ 160 (360)
..+++|++|++++|......+..+..+++|+.|++++|.+. .+| ..+..+++|+.|++++|.+...+ ..+..+++|+
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence 88999999999998544444566789999999999998544 455 44789999999999999988765 4588899999
Q ss_pred EeeccCCCchhhhHhhhcCCCCccEEEeccCCC
Q 039007 161 SLIISHCWNLEYLFEHIGQLSGLRSLILVDCPS 193 (360)
Q Consensus 161 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 193 (360)
.|++++|......+..+..+++|+.|++++|+.
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 999999855443344578899999999999864
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=6e-21 Score=173.39 Aligned_cols=265 Identities=15% Similarity=0.111 Sum_probs=155.1
Q ss_pred hhhhhccCccccEEEEeccCCCCc-ccchHHHhhcCCCccEEEEeCCCCc----ccCcCC-------CCCCCcCeEeccc
Q 039007 28 FSSLLSDLRRVRTILFSINDENTS-ESFFTSCISKSQFLRVLDLDDSTIE----VLPREI-------GNLKHMRYLDLSR 95 (360)
Q Consensus 28 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~-------~~l~~L~~L~l~~ 95 (360)
+...+..+++|++|++++|.+... ...+...+..+++|++|++++|.+. .+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 455677888899999988876311 1123445677888888888887543 334333 6778888888888
Q ss_pred ccccc----ccchhhhcCCccceEeeccccCcCc----CCcccccc---------ccccEEEEecccccc--cc---ccC
Q 039007 96 YCQIK----KLPNSICELQSLQTLILRGCLKLEE----LPKDIRYL---------VSLRMFVVTTKQKSL--QE---SGI 153 (360)
Q Consensus 96 ~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l---------~~L~~L~l~~~~~~~--~~---~~~ 153 (360)
|.... .++..+..+++|+.|++++|.+... ++..+..+ ++|++|++++|.+.. .+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 75444 2566677788888888888755322 22223333 677777777776642 22 244
Q ss_pred CCCCCCcEeeccCCCchh----hhHh-hhcCCCCccEEEeccCCCC----cccCcccCCCCCCCEEeecCCcCccccccc
Q 039007 154 ACLSSLRSLIISHCWNLE----YLFE-HIGQLSGLRSLILVDCPSL----ISLPSAVKCLSSSETLILIDCKSLNLNLNI 224 (360)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~----~~~~-~l~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 224 (360)
..+++|+.|++++|.... .+.+ .+..+++|+.|++++|... ..++..+..+++|++|++++|.......
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-- 261 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA-- 261 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH--
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH--
Confidence 556667777777664332 1222 5566667777777666542 3445555556666666666553211100
Q ss_pred cccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcc----cccccc-cCccccccccccc
Q 039007 225 EMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFM----ALQGSL-KDLEALETLLISA 299 (360)
Q Consensus 225 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~-~~l~~L~~L~l~~ 299 (360)
..++..+....+++|++|+|++|.... .+|..+ ..+++|++|++++
T Consensus 262 -----------------------------~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 262 -----------------------------AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp -----------------------------HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred -----------------------------HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 012333311236778888887775444 266655 5577888888888
Q ss_pred cccccCCC--cc-ccCCCccceecccC
Q 039007 300 CRKLSSLP--ED-IHHLTTLKTLSIKE 323 (360)
Q Consensus 300 ~~~~~~~~--~~-~~~~~~L~~L~l~~ 323 (360)
|++....+ .. ...+++++.+.+..
T Consensus 313 N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 313 NRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp SBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred CcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 87665432 11 22245555555443
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=1.5e-20 Score=170.83 Aligned_cols=258 Identities=14% Similarity=0.035 Sum_probs=182.5
Q ss_pred CcceEEEeeeccccccc---hhhhhccCccccEEEEeccCCCCcccchHH-------HhhcCCCccEEEEeCCCCcc---
Q 039007 11 KRVRHLSFVSASASRND---FSSLLSDLRRVRTILFSINDENTSESFFTS-------CISKSQFLRVLDLDDSTIEV--- 77 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~l~~L~~L~l~~~~~~~--- 77 (360)
++++.|++.++.+.... +...+..+++|++|++++|.+......++. .+..+++|++|++++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 67999999999887732 334577999999999999865433333333 34789999999999999874
Q ss_pred --cCcCCCCCCCcCeEeccccccccccc----hhhhcC---------CccceEeeccccCc-CcCC---ccccccccccE
Q 039007 78 --LPREIGNLKHMRYLDLSRYCQIKKLP----NSICEL---------QSLQTLILRGCLKL-EELP---KDIRYLVSLRM 138 (360)
Q Consensus 78 --~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l---------~~L~~L~l~~~~~~-~~~p---~~~~~l~~L~~ 138 (360)
+|..+..+++|++|++++|......+ ..+..+ ++|+.|++++|.+. ..+| ..+..+++|+.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 67778899999999999985533223 333444 89999999998665 3444 45678899999
Q ss_pred EEEecccccc------ccccCCCCCCCcEeeccCCCch----hhhHhhhcCCCCccEEEeccCCCCcc----cCccc--C
Q 039007 139 FVVTTKQKSL------QESGIACLSSLRSLIISHCWNL----EYLFEHIGQLSGLRSLILVDCPSLIS----LPSAV--K 202 (360)
Q Consensus 139 L~l~~~~~~~------~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~--~ 202 (360)
|++++|.+.. .+..+..+++|+.|++++|... ..++..+..+++|+.|++++|..... ++..+ +
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999998872 2337889999999999999764 56788899999999999999975543 45555 3
Q ss_pred CCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccc
Q 039007 203 CLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL 282 (360)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 282 (360)
.+++|++|++++|...... ...++..+. ..+++|++|++++|......
T Consensus 272 ~~~~L~~L~L~~n~i~~~g-------------------------------~~~l~~~l~-~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDA-------------------------------VRTLKTVID-EKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SSCCCCEEECCSSCCBHHH-------------------------------HHHHHHHHH-HHCTTCCEEECTTSBSCTTS
T ss_pred cCCCeEEEECcCCcCCHHH-------------------------------HHHHHHHHH-hcCCCceEEEccCCcCCcch
Confidence 3677777777766422100 002444331 34688888888888554433
Q ss_pred c---ccccCcccccccccccc
Q 039007 283 Q---GSLKDLEALETLLISAC 300 (360)
Q Consensus 283 ~---~~~~~l~~L~~L~l~~~ 300 (360)
+ .....++.++.+++...
T Consensus 320 ~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 320 DVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHHHHHHHHTCCEECCC
T ss_pred hHHHHHHHHhhhcCcchhhhc
Confidence 2 22234566666665543
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=6.7e-19 Score=153.28 Aligned_cols=149 Identities=20% Similarity=0.195 Sum_probs=64.5
Q ss_pred CccEEEEeCCCCccc-CcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007 64 FLRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT 142 (360)
Q Consensus 64 ~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 142 (360)
.+++|++++|.++.+ +..+..+++|++|++++| .++.++.. +.+++|+.|++++| .+..+|..+..+++|+.|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECC
Confidence 344444444444422 233444444444444444 23333321 34444455555443 222444444444445555555
Q ss_pred cccccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCc-ccCCCCCCCEEeecCCc
Q 039007 143 TKQKSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPS-AVKCLSSSETLILIDCK 216 (360)
Q Consensus 143 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 216 (360)
+|.+...+ ..+..+++|+.|++++|......+..+..+++|+.|++++|... .+|. .+..+++|+.|++++|.
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCc
Confidence 44444332 33444455555555544322222223344455555555554322 2222 23444555555555443
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.6e-18 Score=152.34 Aligned_cols=143 Identities=22% Similarity=0.215 Sum_probs=61.7
Q ss_pred CCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007 63 QFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT 142 (360)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 142 (360)
++|++|+++++.++.++ .+..+++|++|++++| .+..++. +..+++|+.|++++|. ...++ .+..+++|+.|+++
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECC
Confidence 34444444444444333 3444444444444444 2333333 4444444444444432 22222 34444444444444
Q ss_pred ccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007 143 TKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC 215 (360)
Q Consensus 143 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 215 (360)
+|.+...+ .+..+++|+.|++++|.. +.++. +..+++|+.|++++|.. ..++. +..+++|+.|++++|
T Consensus 116 ~n~l~~~~-~l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 116 STQITDVT-PLAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQV-SDLTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp TSCCCCCG-GGTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS
T ss_pred CCCCCCch-hhcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcC-CCChh-hcCCCCCCEEECCCC
Confidence 44444332 244444555555544422 11211 44455555555555532 22222 445555555555554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.7e-18 Score=152.15 Aligned_cols=194 Identities=21% Similarity=0.200 Sum_probs=136.4
Q ss_pred hhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCC
Q 039007 31 LLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQ 110 (360)
Q Consensus 31 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 110 (360)
....+++|++|+++++.+.. ++ .+..+++|++|++++|.++.++. +..+++|++|++++| .++.++ .+..++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~----l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~ 107 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTT----IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQ 107 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCC----CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCT
T ss_pred cHHHcCCcCEEEeeCCCccC----ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCC
Confidence 34567788888888877532 22 36778888888888888776665 778888888888877 455555 477788
Q ss_pred ccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEecc
Q 039007 111 SLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVD 190 (360)
Q Consensus 111 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 190 (360)
+|+.|++++|.. ..++. +..+++|+.|++++|.+...+. +..+++|+.|++++|.. +.++. +..+++|+.|++++
T Consensus 108 ~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 108 SIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQV-SDLTP-LANLSKLTTLKADD 182 (308)
T ss_dssp TCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCS
T ss_pred CCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcC-CCChh-hcCCCCCCEEECCC
Confidence 888888888743 34543 7778888888888887776643 77788888888888743 33433 77788888888888
Q ss_pred CCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccC
Q 039007 191 CPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQ 252 (360)
Q Consensus 191 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 252 (360)
|.. ..++. +..+++|++|++++|...... ....+++|+.|++++|..
T Consensus 183 n~l-~~~~~-l~~l~~L~~L~L~~N~l~~~~-------------~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 183 NKI-SDISP-LASLPNLIEVHLKNNQISDVS-------------PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp SCC-CCCGG-GGGCTTCCEEECTTSCCCBCG-------------GGTTCTTCCEEEEEEEEE
T ss_pred Ccc-CcChh-hcCCCCCCEEEccCCccCccc-------------cccCCCCCCEEEccCCee
Confidence 754 33343 667788888888887543221 145667888888888764
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=6.8e-20 Score=164.89 Aligned_cols=254 Identities=13% Similarity=0.062 Sum_probs=121.0
Q ss_pred EeeeccccccchhhhhccCccccEEEEeccCCCCcc-cchHHHhhcCC-CccEEEEeCCCCccc-CcCCCCC-----CCc
Q 039007 17 SFVSASASRNDFSSLLSDLRRVRTILFSINDENTSE-SFFTSCISKSQ-FLRVLDLDDSTIEVL-PREIGNL-----KHM 88 (360)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~-~L~~L~l~~~~~~~~-~~~~~~l-----~~L 88 (360)
.+..+.+++ .++..+...++|++|++++|.+.... ..+...+..++ +|++|++++|.++.. +..+..+ ++|
T Consensus 4 ~ls~n~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSN-PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCC-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchH-HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 444555554 33444444445777777776653111 11224566666 677777777666522 2333332 666
Q ss_pred CeEeccccccccccchhh----hcC-CccceEeeccccCcCcCCccc----cc-cccccEEEEeccccccc-----cccC
Q 039007 89 RYLDLSRYCQIKKLPNSI----CEL-QSLQTLILRGCLKLEELPKDI----RY-LVSLRMFVVTTKQKSLQ-----ESGI 153 (360)
Q Consensus 89 ~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~~~~~~~~p~~~----~~-l~~L~~L~l~~~~~~~~-----~~~~ 153 (360)
++|++++|......+..+ ..+ ++|+.|++++|.+....+..+ .. .++|++|++++|.+... ...+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 666666664333333322 223 566666666654333222222 12 23556666655554421 1222
Q ss_pred CCCC-CCcEeeccCCCchhhh----HhhhcCC-CCccEEEeccCCCCc----ccCcccCCCCCCCEEeecCCcCcccccc
Q 039007 154 ACLS-SLRSLIISHCWNLEYL----FEHIGQL-SGLRSLILVDCPSLI----SLPSAVKCLSSSETLILIDCKSLNLNLN 223 (360)
Q Consensus 154 ~~l~-~L~~L~l~~~~~~~~~----~~~l~~l-~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 223 (360)
..++ +|+.|++++|...... ...+..+ ++|+.|++++|.... .++..+...
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~------------------- 223 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI------------------- 223 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS-------------------
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC-------------------
Confidence 2332 5555555554332211 1223333 355555555553222 122222221
Q ss_pred ccccCCCCCCCCCCCCCccceEEecCccCCCCchhh--hhcCCCCCCcEEecccCC---C----cccccccccCcccccc
Q 039007 224 IEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQW--LLQGSTKTLQFLGIEDCP---N----FMALQGSLKDLEALET 294 (360)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~--~~~~~~~~L~~L~L~~~~---~----~~~~~~~~~~l~~L~~ 294 (360)
.++|+.|+|++|......+.. .....+++|++|++++|. . ...++..+..+++|+.
T Consensus 224 ---------------~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~ 288 (362)
T 3goz_A 224 ---------------PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288 (362)
T ss_dssp ---------------CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred ---------------CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE
Confidence 124555555554432221111 111456777777777774 1 2234455667777888
Q ss_pred ccccccccccC
Q 039007 295 LLISACRKLSS 305 (360)
Q Consensus 295 L~l~~~~~~~~ 305 (360)
|++++|++...
T Consensus 289 LdL~~N~l~~~ 299 (362)
T 3goz_A 289 VDKNGKEIHPS 299 (362)
T ss_dssp ECTTSCBCCGG
T ss_pred EecCCCcCCCc
Confidence 88888775543
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=3.3e-19 Score=160.44 Aligned_cols=250 Identities=12% Similarity=0.036 Sum_probs=158.5
Q ss_pred EEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-----cCCCCCC-CcCeEeccccccccccchhhhcC-----
Q 039007 41 ILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-----REIGNLK-HMRYLDLSRYCQIKKLPNSICEL----- 109 (360)
Q Consensus 41 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l----- 109 (360)
+.++.+.+ .+.++..+...++|++|++++|.++..+ ..+..++ +|++|++++|......+..+..+
T Consensus 3 ~~ls~n~~---~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPG---SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTT---CCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred cccccccc---hHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 45666665 4456666666667999999998887554 4567777 89999998885544445555553
Q ss_pred CccceEeeccccCcCcCCccc----ccc-ccccEEEEecccccccc-----ccCCC-CCCCcEeeccCCCchh----hhH
Q 039007 110 QSLQTLILRGCLKLEELPKDI----RYL-VSLRMFVVTTKQKSLQE-----SGIAC-LSSLRSLIISHCWNLE----YLF 174 (360)
Q Consensus 110 ~~L~~L~l~~~~~~~~~p~~~----~~l-~~L~~L~l~~~~~~~~~-----~~~~~-l~~L~~L~l~~~~~~~----~~~ 174 (360)
++|++|++++|...+..+..+ ..+ ++|+.|++++|.+...+ ..+.. .++|++|++++|.... .++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 888888888876554444433 333 78888888888776542 12333 3577777777765432 444
Q ss_pred hhhcCCC-CccEEEeccCCCCcccCc----ccCCC-CCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEec
Q 039007 175 EHIGQLS-GLRSLILVDCPSLISLPS----AVKCL-SSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVS 248 (360)
Q Consensus 175 ~~l~~l~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 248 (360)
..+..++ +|++|++++|......+. .+..+ ++|++|++++|.....
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~---------------------------- 211 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK---------------------------- 211 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS----------------------------
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh----------------------------
Confidence 5555554 777777777754332221 22333 3556665555431110
Q ss_pred CccCCCCchhhhhcCCCCCCcEEecccCCCccc----ccccccCcccccccccccccccc-------CCCccccCCCccc
Q 039007 249 GLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMA----LQGSLKDLEALETLLISACRKLS-------SLPEDIHHLTTLK 317 (360)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~ 317 (360)
....++..+. ...++|++|+|++|..... +...+..+++|++|++++|.+.. .++..+..+++|+
T Consensus 212 ---~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 212 ---SYAELAYIFS-SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp ---CHHHHHHHHH-HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred ---HHHHHHHHHh-cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 0112344331 2356999999999954442 23456788999999999998322 2445677889999
Q ss_pred eecccCCh
Q 039007 318 TLSIKECP 325 (360)
Q Consensus 318 ~L~l~~c~ 325 (360)
+|++++|+
T Consensus 288 ~LdL~~N~ 295 (362)
T 3goz_A 288 LVDKNGKE 295 (362)
T ss_dssp EECTTSCB
T ss_pred EEecCCCc
Confidence 99999995
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=8.4e-18 Score=142.26 Aligned_cols=197 Identities=16% Similarity=0.186 Sum_probs=119.6
Q ss_pred CccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCC-ccccccccccEEE
Q 039007 64 FLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFV 140 (360)
Q Consensus 64 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~ 140 (360)
.|++|++++|.++.+|. .+..+++|++|++++|..++.++ ..+..+++|+.|++++|.....+| ..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67888888888886655 57778888888888774355555 356778888888888722333444 4567778888888
Q ss_pred EeccccccccccCCCCCCCc---EeeccCCCchhhhH-hhhcCCCCcc-EEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007 141 VTTKQKSLQESGIACLSSLR---SLIISHCWNLEYLF-EHIGQLSGLR-SLILVDCPSLISLPSAVKCLSSSETLILIDC 215 (360)
Q Consensus 141 l~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~-~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 215 (360)
+++|.+..++. +..+++|+ .|++++|..++.++ ..+..+++|+ .|++++|... .+|......
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~----------- 178 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG----------- 178 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-----------
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-----------
Confidence 88877766654 55666665 66666652233222 2344555555 5555555322 333322112
Q ss_pred cCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCC-CCCcEEecccCCCcccccccccCcccccc
Q 039007 216 KSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGST-KTLQFLGIEDCPNFMALQGSLKDLEALET 294 (360)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 294 (360)
++|+.|++++|..+..++...+ ..+ ++|++|++++| .++.+|.. .+++|+.
T Consensus 179 ------------------------~~L~~L~L~~n~~l~~i~~~~~-~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~ 230 (239)
T 2xwt_C 179 ------------------------TKLDAVYLNKNKYLTVIDKDAF-GGVYSGPSLLDVSQT-SVTALPSK--GLEHLKE 230 (239)
T ss_dssp ------------------------CEEEEEECTTCTTCCEECTTTT-TTCSBCCSEEECTTC-CCCCCCCT--TCTTCSE
T ss_pred ------------------------CCCCEEEcCCCCCcccCCHHHh-hccccCCcEEECCCC-ccccCChh--HhccCce
Confidence 3555566665543434433322 455 77888888776 44555543 5677777
Q ss_pred ccccccc
Q 039007 295 LLISACR 301 (360)
Q Consensus 295 L~l~~~~ 301 (360)
|++.++.
T Consensus 231 L~l~~~~ 237 (239)
T 2xwt_C 231 LIARNTW 237 (239)
T ss_dssp EECTTC-
T ss_pred eeccCcc
Confidence 7777764
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=8.1e-19 Score=154.45 Aligned_cols=199 Identities=15% Similarity=0.052 Sum_probs=147.8
Q ss_pred cceEEEeeeccccccchhhh--hccCccccEEEEeccCCCCcccchHHHh--hcCCCccEEEEeCCCCcc-cC----cCC
Q 039007 12 RVRHLSFVSASASRNDFSSL--LSDLRRVRTILFSINDENTSESFFTSCI--SKSQFLRVLDLDDSTIEV-LP----REI 82 (360)
Q Consensus 12 ~l~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~-~~----~~~ 82 (360)
.++.+.+.+..+....+... +..+++|++|++++|.+. +..+..+ ..+++|++|++++|.++. .+ ..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKIT---GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCB---SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEec---cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 36778888877766444332 335577999999999873 3333444 789999999999999873 33 234
Q ss_pred CCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCc--C--CccccccccccEEEEeccccccccc----cCC
Q 039007 83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEE--L--PKDIRYLVSLRMFVVTTKQKSLQES----GIA 154 (360)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--p~~~~~l~~L~~L~l~~~~~~~~~~----~~~ 154 (360)
..+++|++|++++|......+..++.+++|++|++++|...+. + +..++.+++|++|++++|.+...+. .+.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 5789999999999865555557788999999999999865432 2 2234688999999999998875543 256
Q ss_pred CCCCCcEeeccCCCchhhhHhhhcCC---CCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007 155 CLSSLRSLIISHCWNLEYLFEHIGQL---SGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK 216 (360)
Q Consensus 155 ~l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 216 (360)
.+++|++|++++|......|..+..+ ++|++|++++|... .+|..+. ++|++|++++|.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCc
Confidence 78999999999987655556666666 79999999998654 6776653 688888887765
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=4.9e-17 Score=145.49 Aligned_cols=239 Identities=15% Similarity=0.092 Sum_probs=163.0
Q ss_pred cEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccch-hhhcCCccceEe
Q 039007 39 RTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLPN-SICELQSLQTLI 116 (360)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~ 116 (360)
++++.+++.++..+.. + .+++++|++++|.++.+|+ .|..+++|++|++++|...+.+|. .|.++++|+++.
T Consensus 12 ~~v~C~~~~Lt~iP~~----l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSD----L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTCCSCCTT----C--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCCCCccCcC----c--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 6778887776432222 2 2578999999999998876 588999999999999866666664 567888887654
Q ss_pred eccccCcCcC-CccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCCchhhhHh-hhcCC-CCccEEEeccCC
Q 039007 117 LRGCLKLEEL-PKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCWNLEYLFE-HIGQL-SGLRSLILVDCP 192 (360)
Q Consensus 117 l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l-~~L~~L~l~~~~ 192 (360)
..++..+..+ |..+..+++|++|++++|.+...+ ..+....++..+++.++..+..++. .+..+ ..++.|++++|.
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 4433344444 567889999999999999887664 3445566777888877655554443 23343 467888888874
Q ss_pred CCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEe
Q 039007 193 SLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLG 272 (360)
Q Consensus 193 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~ 272 (360)
++.++.......+|+.+.+.+++.+.... ...+..+++|+.|++++|. +..+|. ..+.+|+.|.
T Consensus 166 -i~~i~~~~f~~~~L~~l~l~~~n~l~~i~----------~~~f~~l~~L~~LdLs~N~-l~~lp~----~~~~~L~~L~ 229 (350)
T 4ay9_X 166 -IQEIHNSAFNGTQLDELNLSDNNNLEELP----------NDVFHGASGPVILDISRTR-IHSLPS----YGLENLKKLR 229 (350)
T ss_dssp -CCEECTTSSTTEEEEEEECTTCTTCCCCC----------TTTTTTEECCSEEECTTSC-CCCCCS----SSCTTCCEEE
T ss_pred -ccCCChhhccccchhHHhhccCCcccCCC----------HHHhccCcccchhhcCCCC-cCccCh----hhhccchHhh
Confidence 44566665566778888887666554332 1234556678888887775 445554 3356777777
Q ss_pred cccCCCcccccccccCcccccccccccc
Q 039007 273 IEDCPNFMALQGSLKDLEALETLLISAC 300 (360)
Q Consensus 273 L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 300 (360)
+.++..++.+|. +..+++|+.+++.++
T Consensus 230 ~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 230 ARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred hccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 777777777774 677777777777653
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=3.1e-17 Score=146.77 Aligned_cols=219 Identities=15% Similarity=0.117 Sum_probs=106.6
Q ss_pred ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCc-ccCc-CCCCCCCcCeEecccccccccc-chhhhcCCcc
Q 039007 36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIE-VLPR-EIGNLKHMRYLDLSRYCQIKKL-PNSICELQSL 112 (360)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L 112 (360)
+++++|++++|.+ ....+..|.++++|++|++++|.+. .+|. .|..+++++++...++..+..+ |..+..+++|
T Consensus 30 ~~l~~L~Ls~N~i---~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKL---RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCC---SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCCEEEccCCcC---CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 3556666666654 2223334556666666666666543 3332 3455555554333222233333 3445556666
Q ss_pred ceEeeccccCcCcCCccccccccccEEEEec-ccccccc-ccCCCC-CCCcEeeccCCCchhhhHhhhcCCCCccEEEec
Q 039007 113 QTLILRGCLKLEELPKDIRYLVSLRMFVVTT-KQKSLQE-SGIACL-SSLRSLIISHCWNLEYLFEHIGQLSGLRSLILV 189 (360)
Q Consensus 113 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~-~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 189 (360)
+.|++++|.+....+..+....++..+++.+ +.+..++ ..+..+ ..++.|++++|. ++.++......++|+++++.
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECT
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhc
Confidence 6666665533222222233344455555543 2333222 233333 245556666542 33344444444556666665
Q ss_pred cCCCCcccCc-ccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCC
Q 039007 190 DCPSLISLPS-AVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTL 268 (360)
Q Consensus 190 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L 268 (360)
++...+.+|. .+..+++|++|+++++...... ...+.+|+.|.+.++..++.+|. + ..+++|
T Consensus 186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp--------------~~~~~~L~~L~~l~~~~l~~lP~-l--~~l~~L 248 (350)
T 4ay9_X 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLP--------------SYGLENLKKLRARSTYNLKKLPT-L--EKLVAL 248 (350)
T ss_dssp TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC--------------SSSCTTCCEEECTTCTTCCCCCC-T--TTCCSC
T ss_pred cCCcccCCCHHHhccCcccchhhcCCCCcCccC--------------hhhhccchHhhhccCCCcCcCCC-c--hhCcCh
Confidence 5545555553 3455666666666665422111 11233555555555555556653 2 566777
Q ss_pred cEEeccc
Q 039007 269 QFLGIED 275 (360)
Q Consensus 269 ~~L~L~~ 275 (360)
+.+++.+
T Consensus 249 ~~l~l~~ 255 (350)
T 4ay9_X 249 MEASLTY 255 (350)
T ss_dssp CEEECSC
T ss_pred hhCcCCC
Confidence 7777754
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=4e-17 Score=139.08 Aligned_cols=175 Identities=16% Similarity=0.067 Sum_probs=103.9
Q ss_pred cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007 37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL 115 (360)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 115 (360)
..++++++++.+......++ +.++.|++++|.+..++ ..+..+++|++|++++|......+..+..+++|+.|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCeEEecCCCCccccCCCCC------CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 35566666665432222111 35667777777666433 346666777777777664333334445666777777
Q ss_pred eeccccCcCcCCccccccccccEEEEeccccccccc-cCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCC
Q 039007 116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQES-GIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSL 194 (360)
Q Consensus 116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 194 (360)
++++|.+....+..+..+++|+.|++++|.+...+. .+..+++|+.|++++|......+..+..+++|+.|++++|...
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 777664443333445666777777777776665543 3566777777777776433333335666777777777777554
Q ss_pred cccCcccCCCCCCCEEeecCCcC
Q 039007 195 ISLPSAVKCLSSSETLILIDCKS 217 (360)
Q Consensus 195 ~~~~~~~~~~~~L~~L~l~~~~~ 217 (360)
...+..+..+++|+.|++++|..
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCB
T ss_pred ccCHHHHhCCCCCCEEEeeCCce
Confidence 43344566777777777777654
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=5e-17 Score=138.53 Aligned_cols=176 Identities=15% Similarity=0.106 Sum_probs=128.0
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcC
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMR 89 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~ 89 (360)
+..+.+++.++.+.. ++..+. ++++.|++++|.+ ....+..+.++++|++|++++|.++.++ ..+..+++|+
T Consensus 14 ~~~~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGL---ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGGTEEECTTCCCSS--CCSCCC--TTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCeEEecCCCCccc--cCCCCC--CCCCEEEccCCCc---CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence 455677777777665 333333 5788888888887 3444456788888899999888888554 4578888899
Q ss_pred eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccc-cCCCCCCCcEeeccCCC
Q 039007 90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQES-GIACLSSLRSLIISHCW 168 (360)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 168 (360)
+|++++|......+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+...+. .+..+++|+.|++++|.
T Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 99998874433334556788889999998875443333446788889999998888877654 57888889999998876
Q ss_pred chhhhHhhhcCCCCccEEEeccCCC
Q 039007 169 NLEYLFEHIGQLSGLRSLILVDCPS 193 (360)
Q Consensus 169 ~~~~~~~~l~~l~~L~~L~l~~~~~ 193 (360)
.....+..+..+++|+.|++++|+.
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCccCHHHHhCCCCCCEEEeeCCce
Confidence 5544445677888999999988864
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=5e-17 Score=134.44 Aligned_cols=178 Identities=16% Similarity=0.104 Sum_probs=120.6
Q ss_pred eEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcCeEe
Q 039007 14 RHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMRYLD 92 (360)
Q Consensus 14 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~ 92 (360)
+.++..++.+.. ++.. -.++|++|++++|.+. ...+..+..+++|++|++++|.++.++.. +..+++|++|+
T Consensus 10 ~~v~c~~~~l~~--~p~~--~~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 10 TTVECYSQGRTS--VPTG--IPAQTTYLDLETNSLK---SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TEEECCSSCCSS--CCSC--CCTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEecCCCccC--CCCC--CCCCCcEEEcCCCccC---cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 344555554443 2211 2357888888888763 33445577788888888888887766543 57788888888
Q ss_pred ccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccc-cCCCCCCCcEeeccCCCch
Q 039007 93 LSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQES-GIACLSSLRSLIISHCWNL 170 (360)
Q Consensus 93 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~ 170 (360)
+++|. ++.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...+. .+..+++|+.|++++|..
T Consensus 83 Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~- 160 (208)
T 2o6s_A 83 LSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW- 160 (208)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-
T ss_pred CCCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-
Confidence 88774 44444 446778888888888775443333446778888888888887776543 467788888888888732
Q ss_pred hhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCC
Q 039007 171 EYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSS 206 (360)
Q Consensus 171 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 206 (360)
.+.+++|+.|+++.|.....+|+.++.++.
T Consensus 161 ------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 161 ------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 345678888888887777777877766554
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=2.3e-16 Score=137.36 Aligned_cols=170 Identities=18% Similarity=0.228 Sum_probs=123.8
Q ss_pred hccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCc
Q 039007 32 LSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQS 111 (360)
Q Consensus 32 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 111 (360)
+..+++|+.|++++|.+... + .+..+++|++|++++|.++.++. +..+++|++|++++| .++.++. +..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~----~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV----Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC----T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTT
T ss_pred hhhcCcccEEEccCCCcccC----h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCC
Confidence 55778888888888876322 2 26778888888888888887665 788888888888877 4555554 788888
Q ss_pred cceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccC
Q 039007 112 LQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDC 191 (360)
Q Consensus 112 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 191 (360)
|+.|++++|... .+ ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.... ++. +..+++|+.|++++|
T Consensus 114 L~~L~L~~n~i~-~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 114 LKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCC-CC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc-chh-hcCCCccCEEECCCC
Confidence 888888887443 34 3577888888888888887766 567778888888888874433 333 777888888888887
Q ss_pred CCCcccCcccCCCCCCCEEeecCCc
Q 039007 192 PSLISLPSAVKCLSSSETLILIDCK 216 (360)
Q Consensus 192 ~~~~~~~~~~~~~~~L~~L~l~~~~ 216 (360)
.. ..++. +..+++|+.|++++|.
T Consensus 189 ~i-~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 189 HI-SDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CC-CBCGG-GTTCTTCSEEEEEEEE
T ss_pred cC-CCChh-hccCCCCCEEECcCCc
Confidence 43 34443 6677788888877764
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=2.8e-16 Score=136.79 Aligned_cols=167 Identities=19% Similarity=0.217 Sum_probs=140.2
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY 90 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 90 (360)
++++.|++.++.+.. .+.+..+++|++|++++|.+. ...+ +.++++|++|++++|.++.++. +..+++|++
T Consensus 46 ~~L~~L~l~~~~i~~---~~~~~~l~~L~~L~L~~n~l~---~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 46 NSIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKLT---DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HTCCEEECTTSCCCC---CTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred CcccEEEccCCCccc---ChhHhcCCCCCEEEccCCccC---CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 568999999998877 245899999999999999874 2222 8899999999999999988654 899999999
Q ss_pred EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCch
Q 039007 91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL 170 (360)
Q Consensus 91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 170 (360)
|++++| .++.++ .+..+++|+.|++++|... .+ ..+..+++|+.|++++|.+...+. +..+++|+.|++++|..
T Consensus 117 L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i- 190 (291)
T 1h6t_A 117 LSLEHN-GISDIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI- 190 (291)
T ss_dssp EECTTS-CCCCCG-GGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-
T ss_pred EECCCC-cCCCCh-hhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC-
Confidence 999998 555554 4889999999999998544 44 578899999999999999988754 88999999999999844
Q ss_pred hhhHhhhcCCCCccEEEeccCCC
Q 039007 171 EYLFEHIGQLSGLRSLILVDCPS 193 (360)
Q Consensus 171 ~~~~~~l~~l~~L~~L~l~~~~~ 193 (360)
+.++ .+..+++|+.|++++|+.
T Consensus 191 ~~l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 191 SDLR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CBCG-GGTTCTTCSEEEEEEEEE
T ss_pred CCCh-hhccCCCCCEEECcCCcc
Confidence 4444 488999999999999854
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=5e-16 Score=127.23 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=106.1
Q ss_pred ccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCcc
Q 039007 33 SDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSL 112 (360)
Q Consensus 33 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 112 (360)
..+++|++|++++|.+. .++ .+..+++|++|++++|.++.+ +.+..+++|++|++++|......+..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~----~l~-~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT----DLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS----CCT-TGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCcc----ChH-HHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 56677888888877753 222 367777888888888765544 366777888888888775444456667778888
Q ss_pred ceEeeccccCcCcCCccccccccccEEEEeccc-cccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccC
Q 039007 113 QTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ-KSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDC 191 (360)
Q Consensus 113 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 191 (360)
+.|++++|...+..|..+..+++|++|++++|. +...+ .+..+++|+.|++++|.. +.++ .+..+++|+.|++++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCEEEECBC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCEEEeeCc
Confidence 888888776665566667778888888888876 55554 577778888888887643 3333 5677788888888887
Q ss_pred CC
Q 039007 192 PS 193 (360)
Q Consensus 192 ~~ 193 (360)
..
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 53
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.6e-16 Score=130.23 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=101.1
Q ss_pred hcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEE
Q 039007 60 SKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMF 139 (360)
Q Consensus 60 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 139 (360)
..+++|++|++++|.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|...+..|..+..+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45667888888888887776 6777888888888877 444444 46777888888888776555556667777777777
Q ss_pred EEecccccc-ccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007 140 VVTTKQKSL-QESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK 216 (360)
Q Consensus 140 ~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 216 (360)
++++|.+.. .+..+..+++|+.|++++|..++.++ .+..+++|+.|++++|.. ..++ .+..+++|++|+++++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCEEEeeCcc
Confidence 777777664 34556667777777777765445444 466677777777776643 2333 45556666666666553
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=1e-15 Score=126.45 Aligned_cols=146 Identities=22% Similarity=0.174 Sum_probs=73.8
Q ss_pred EEEEeCCCCcccCcCCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc
Q 039007 67 VLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ 145 (360)
Q Consensus 67 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 145 (360)
.++.+++.++.+|..+ .++|++|++++|. ++.++ ..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4455555555555433 2456666666653 33333 334566666666666653332222234556666666666665
Q ss_pred ccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCC
Q 039007 146 KSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDC 215 (360)
Q Consensus 146 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 215 (360)
+...+ ..+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 55443 23455666666666655332222233455666666666665433222223445555555555544
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=2.1e-16 Score=149.03 Aligned_cols=195 Identities=17% Similarity=0.119 Sum_probs=127.8
Q ss_pred CCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007 63 QFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT 142 (360)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 142 (360)
.+|+.|++++|.++.+|..+ +++|++|++++| .++.+| ..+++|+.|++++|.+. .+|. +.. +|+.|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLS-TLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCS-CCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCC-Ccch-hhc--CCCEEECC
Confidence 37889999988888887765 378999999887 455777 45788899999887544 4776 544 88889998
Q ss_pred ccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccc
Q 039007 143 TKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNL 222 (360)
Q Consensus 143 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 222 (360)
+|.+..++. .+++|+.|++++|.. +.+|. .+++|+.|++++|.. +.+|. +. ++|+.|++++|.... .+
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~L-~~lp~-l~--~~L~~L~Ls~N~L~~-lp 196 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQL-TFLPE-LP--ESLEALDVSTNLLES-LP 196 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCC-SCCCC-CC--TTCCEEECCSSCCSS-CC
T ss_pred CCcCCCCCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCCC-CCcch-hh--CCCCEEECcCCCCCc-hh
Confidence 888877765 678888888888753 33444 467888888888754 34666 44 788888888775331 11
Q ss_pred cccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccccccccCc
Q 039007 223 NIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDL 289 (360)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l 289 (360)
. +.. ......+.|+.|+|++|. +..+|..+ ..+++|++|+|++|...+.+|..+..+
T Consensus 197 ~--~~~-----~L~~~~~~L~~L~Ls~N~-l~~lp~~l--~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 197 A--VPV-----RNHHSEETEIFFRCRENR-ITHIPENI--LSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C--CC-------------CCEEEECCSSC-CCCCCGGG--GGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred h--HHH-----hhhcccccceEEecCCCc-ceecCHHH--hcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 0 000 001111223777777665 33566655 346777777777775555555555443
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=6.6e-16 Score=147.15 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=65.3
Q ss_pred hhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccE
Q 039007 59 ISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRM 138 (360)
Q Consensus 59 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 138 (360)
+..+++|+.|++++|.+..+++ +..+++|+.|++++| .+..++ .+..+++|+.|++++|.+. .+ ..+..+++|+.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~ 135 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLES 135 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSCCC-CC-GGGGGCTTCSE
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCCCC-CC-ccccCCCccCE
Confidence 4444555555555554443333 444455555555544 233333 2444455555555444222 22 23444455555
Q ss_pred EEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007 139 FVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK 216 (360)
Q Consensus 139 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 216 (360)
|++++|.+... ..+..+++|+.|++++|......+ +..+++|+.|++++|... .++ .+..+++|+.|++++|.
T Consensus 136 L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 136 LYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEECCSEE
T ss_pred EECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEccCCc
Confidence 55555544443 344444555555555443222211 444455555555554222 222 24444555555554443
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=4.1e-16 Score=148.58 Aligned_cols=168 Identities=20% Similarity=0.234 Sum_probs=133.0
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCe
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRY 90 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 90 (360)
++++.|++.++.+.. .+.+..+++|+.|++++|.+. ...+ +..+++|+.|++++|.+..+| .+..+++|+.
T Consensus 43 ~~L~~L~l~~n~i~~---l~~l~~l~~L~~L~Ls~N~l~---~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKLT---DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp TTCCCCBCTTCCCCC---CTTGGGCTTCCEEECTTSCCC---CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred CCCCEEECcCCCCCC---ChHHccCCCCCEEEeeCCCCC---CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 568888888888766 246888999999999998863 2222 788999999999999888765 6888999999
Q ss_pred EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCch
Q 039007 91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNL 170 (360)
Q Consensus 91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 170 (360)
|++++| .+..++. +..+++|+.|++++|.+. .+ ..+..+++|+.|++++|.+...+. +..+++|+.|++++|..
T Consensus 114 L~Ls~N-~l~~l~~-l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i- 187 (605)
T 1m9s_A 114 LSLEHN-GISDING-LVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI- 187 (605)
T ss_dssp EECTTS-CCCCCGG-GGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-
T ss_pred EEecCC-CCCCCcc-ccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC-
Confidence 999988 4555544 888999999999987544 34 568889999999999998887654 88899999999998744
Q ss_pred hhhHhhhcCCCCccEEEeccCCCC
Q 039007 171 EYLFEHIGQLSGLRSLILVDCPSL 194 (360)
Q Consensus 171 ~~~~~~l~~l~~L~~L~l~~~~~~ 194 (360)
..+ ..+..+++|+.|++++|+..
T Consensus 188 ~~l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SDL-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CBC-GGGTTCTTCSEEECCSEEEE
T ss_pred CCC-hHHccCCCCCEEEccCCcCc
Confidence 334 35788999999999988543
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=2.6e-15 Score=125.13 Aligned_cols=147 Identities=18% Similarity=0.190 Sum_probs=105.9
Q ss_pred eEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEe
Q 039007 14 RHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLD 92 (360)
Q Consensus 14 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~ 92 (360)
+.+++.++.+.. ++..+. +++++|++++|.+ ....+..|..+++|++|++++|.++.+ |..+..+++|++|+
T Consensus 14 ~~v~c~~~~l~~--iP~~l~--~~l~~L~l~~n~i---~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDCRGKGLTE--IPTNLP--ETITEIRLEQNTI---KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TEEECTTSCCSS--CCSSCC--TTCCEEECCSSCC---CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred CEEEcCCCCcCc--CCCccC--cCCCEEECCCCcC---CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 345555555554 222232 5788888888876 344445677888888888888888754 66788888888888
Q ss_pred ccccccccccch-hhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCC
Q 039007 93 LSRYCQIKKLPN-SICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCW 168 (360)
Q Consensus 93 l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 168 (360)
+++| .++.+|. .+..+++|+.|++++|.+....|..+..+++|+.|++++|.+...+ ..+..+++|+.|++.+|.
T Consensus 87 Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 87 LYGN-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCC-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 8877 4555554 3577888888888887665555667788888888888888887664 457778888888888874
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=2e-15 Score=142.42 Aligned_cols=184 Identities=15% Similarity=0.155 Sum_probs=141.0
Q ss_pred cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEe
Q 039007 37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLI 116 (360)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 116 (360)
+|+.|++++|.+.. ++..+ +++|++|++++|.++.+| ..+++|++|++++| .++.+|. +.. +|+.|+
T Consensus 60 ~L~~L~Ls~n~L~~----lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS----LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC----CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCc----cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEE
Confidence 89999999998743 23222 378999999999999888 45789999999988 5556777 654 999999
Q ss_pred eccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcc
Q 039007 117 LRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLIS 196 (360)
Q Consensus 117 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 196 (360)
+++|.+. .+|. .+++|+.|++++|.+..++. .+++|+.|++++|.. +.+|. +. ++|+.|++++|.. +.
T Consensus 127 Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L-~~lp~-l~--~~L~~L~Ls~N~L-~~ 194 (571)
T 3cvr_A 127 VDNNQLT-MLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQL-TFLPE-LP--ESLEALDVSTNLL-ES 194 (571)
T ss_dssp CCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCCC-CC--TTCCEEECCSSCC-SS
T ss_pred CCCCcCC-CCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCC-CCcch-hh--CCCCEEECcCCCC-Cc
Confidence 9998544 4776 68899999999999988765 678999999999854 44666 54 8999999999854 47
Q ss_pred cCcccCCCCCC-------CEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhh
Q 039007 197 LPSAVKCLSSS-------ETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWL 260 (360)
Q Consensus 197 ~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 260 (360)
+|. +.. +| +.|++++|.... .+.....+++|+.|+|++|...+.+|..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~------------lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITH------------IPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCC------------CCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCccee------------cCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 777 443 67 999999986442 22234457899999999998877777655
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=124.64 Aligned_cols=150 Identities=15% Similarity=0.089 Sum_probs=118.6
Q ss_pred ceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccc-hHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCe
Q 039007 13 VRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESF-FTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRY 90 (360)
Q Consensus 13 l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~ 90 (360)
-+.+++.++.++. ++..+ .+.+++|++++|.+. .. ....|..+++|++|++++|.++.++. .+..+++|++
T Consensus 13 ~~~l~~s~n~l~~--iP~~~--~~~~~~L~L~~N~l~---~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 13 GTTVDCSNQKLNK--IPEHI--PQYTAELRLNNNEFT---VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp TTEEECCSSCCSS--CCSCC--CTTCSEEECCSSCCC---EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCEeEeCCCCccc--CccCC--CCCCCEEEcCCCcCC---ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 3578888887766 33333 345789999999874 22 22457889999999999999986655 6899999999
Q ss_pred EeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccc-cccCCCCCCCcEeeccCCCc
Q 039007 91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQ-ESGIACLSSLRSLIISHCWN 169 (360)
Q Consensus 91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~ 169 (360)
|++++|......+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+... +..+..+++|+.|++++|..
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 99998855444455688999999999999876666677889999999999999998876 67888999999999998753
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=5e-15 Score=124.18 Aligned_cols=147 Identities=20% Similarity=0.200 Sum_probs=111.8
Q ss_pred ceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcCeE
Q 039007 13 VRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMRYL 91 (360)
Q Consensus 13 l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L 91 (360)
.+.++..++.+.. ++..+ .++|++|++++|.+ ....+..|.++++|++|++++|.+..+|.. +..+++|++|
T Consensus 21 ~~~v~c~~~~l~~--ip~~~--~~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 21 GTTVDCRSKRHAS--VPAGI--PTNAQILYLHDNQI---TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp TTEEECTTSCCSS--CCSCC--CTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEeEccCCCcCc--cCCCC--CCCCCEEEcCCCcc---CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 3456666665544 22222 27889999998887 344456688889999999999998877654 6888999999
Q ss_pred eccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEecccccccc-ccCCCCCCCcEeeccCCC
Q 039007 92 DLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE-SGIACLSSLRSLIISHCW 168 (360)
Q Consensus 92 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 168 (360)
++++| .++.++ ..+..+++|+.|++++|. +..+|..+..+++|+.|++++|.+...+ ..+..+++|+.|++.+|.
T Consensus 94 ~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 94 DLGTN-QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ECCCC-cCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 99988 445554 446788999999999874 4478888888999999999999887765 457888999999998875
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=1.3e-14 Score=120.75 Aligned_cols=147 Identities=18% Similarity=0.167 Sum_probs=77.0
Q ss_pred EEEEeCCCCcccCcCCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc
Q 039007 67 VLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ 145 (360)
Q Consensus 67 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 145 (360)
.++.+++.++.+|..+. ++|+.|++++|. +..++ ..+..+++|+.|++++|.+....|..+..+++|+.|++++|.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 44555555555554432 455555555552 22332 345555555555555554443334555555555555555555
Q ss_pred cccccc-cCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007 146 KSLQES-GIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK 216 (360)
Q Consensus 146 ~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 216 (360)
+..++. .+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 554432 24555666666666554433334455566666666666664433333445556666666666554
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=2.2e-15 Score=129.15 Aligned_cols=167 Identities=18% Similarity=0.159 Sum_probs=108.5
Q ss_pred cCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccc
Q 039007 34 DLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQ 113 (360)
Q Consensus 34 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 113 (360)
.+.++..++++++.+. +.. .+..+++|++|++++|.++.++ .+..+++|++|++++| .++.++. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~---~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT---DLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTT---SEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCC
T ss_pred HHHHHHHHHhcCCCcc---ccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCC
Confidence 3445566666666542 111 2566777777777777777665 5677777777777776 4555555 77777777
Q ss_pred eEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCC
Q 039007 114 TLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPS 193 (360)
Q Consensus 114 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 193 (360)
.|++++|. ...+|.... ++|+.|++++|.+...+ .+..+++|+.|++++|.. +.++ .+..+++|+.|++++|..
T Consensus 89 ~L~L~~N~-l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 89 ELSVNRNR-LKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EEECCSSC-CSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECTTSCC
T ss_pred EEECCCCc-cCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECCCCcC
Confidence 77777763 334543322 77777777777776653 567777777777777643 3333 466777777888777754
Q ss_pred CcccCcccCCCCCCCEEeecCCc
Q 039007 194 LISLPSAVKCLSSSETLILIDCK 216 (360)
Q Consensus 194 ~~~~~~~~~~~~~L~~L~l~~~~ 216 (360)
... ..+..+++|+.|+++++.
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEE
T ss_pred cch--HHhccCCCCCEEeCCCCc
Confidence 332 456667777777777654
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=3e-15 Score=128.28 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=133.8
Q ss_pred cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeE
Q 039007 12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYL 91 (360)
Q Consensus 12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 91 (360)
++..+.+..+.+.+ ...+..+++|++|++++|.+.. ++ .+..+++|++|++++|.++.++. +..+++|++|
T Consensus 20 ~l~~l~l~~~~i~~---~~~~~~l~~L~~L~l~~n~i~~----l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 20 NAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQS----LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHTCSCTTS---EECHHHHTTCSEEECTTSCCCC----CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEE
T ss_pred HHHHHHhcCCCccc---ccchhhcCcCcEEECcCCCccc----ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEE
Confidence 34556666666665 2267899999999999998742 23 47889999999999999998776 8999999999
Q ss_pred eccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchh
Q 039007 92 DLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLE 171 (360)
Q Consensus 92 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 171 (360)
++++| .++.++. +.. ++|+.|++++|... .++ .+..+++|+.|++++|.+...+ .+..+++|+.|++++|....
T Consensus 91 ~L~~N-~l~~l~~-~~~-~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 91 SVNRN-RLKNLNG-IPS-ACLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp ECCSS-CCSCCTT-CCC-SSCCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred ECCCC-ccCCcCc-ccc-CcccEEEccCCccC-CCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence 99998 5666665 333 99999999998544 454 5889999999999999998874 78899999999999985544
Q ss_pred hhHhhhcCCCCccEEEeccCCC
Q 039007 172 YLFEHIGQLSGLRSLILVDCPS 193 (360)
Q Consensus 172 ~~~~~l~~l~~L~~L~l~~~~~ 193 (360)
. ..+..+++|+.|++++|..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEE
T ss_pred h--HHhccCCCCCEEeCCCCcc
Confidence 3 6688899999999999854
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=8.1e-15 Score=131.59 Aligned_cols=171 Identities=18% Similarity=0.166 Sum_probs=104.0
Q ss_pred eEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhh-cCCCccEEEEeCCCCcccC-cCCCCCCCcCeE
Q 039007 14 RHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCIS-KSQFLRVLDLDDSTIEVLP-REIGNLKHMRYL 91 (360)
Q Consensus 14 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L 91 (360)
+.+++.++.+.. ++..+ .+.++.|++++|.+ ....+..+. ++++|++|++++|.++.++ ..+..+++|++|
T Consensus 21 ~~l~c~~~~l~~--iP~~~--~~~l~~L~Ls~N~l---~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSKQQLPN--VPQSL--PSYTALLDLSHNNL---SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCSSCCSS--CCSSC--CTTCSEEECCSSCC---CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcCc--cCccC--CCCCCEEECCCCCC---CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 355666665554 22222 23467777777766 333334455 6777777777777777554 346777777777
Q ss_pred eccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccC----CCCCCCcEeeccC
Q 039007 92 DLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGI----ACLSSLRSLIISH 166 (360)
Q Consensus 92 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~----~~l~~L~~L~l~~ 166 (360)
++++|. +..++ ..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+..++..+ ..+++|+.|++++
T Consensus 94 ~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 94 DLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp ECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred ECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 777763 34443 44667777777777776555444556777777777777777776654333 4577777777777
Q ss_pred CCchhhhHhhhcCCCC--ccEEEeccCC
Q 039007 167 CWNLEYLFEHIGQLSG--LRSLILVDCP 192 (360)
Q Consensus 167 ~~~~~~~~~~l~~l~~--L~~L~l~~~~ 192 (360)
|.....-+..+..++. ++.|++++|+
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCC
Confidence 6443322344555555 3667777765
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=7e-15 Score=117.11 Aligned_cols=128 Identities=17% Similarity=0.155 Sum_probs=70.0
Q ss_pred ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007 36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL 115 (360)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 115 (360)
++|++|++++|.+. ...++..+..+++|++|++++|.++.+ ..+..+++|++|++++|...+.+|..+..+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~--~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSN--DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCB--TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCC--hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45566666655542 123333345555666666666655544 455556666666666553333345545556666666
Q ss_pred eeccccCcCcCC--ccccccccccEEEEeccccccccc----cCCCCCCCcEeeccCC
Q 039007 116 ILRGCLKLEELP--KDIRYLVSLRMFVVTTKQKSLQES----GIACLSSLRSLIISHC 167 (360)
Q Consensus 116 ~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~ 167 (360)
++++|. +..+| ..+..+++|+.|++++|.+...+. .+..+++|+.|++.+|
T Consensus 101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred eccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 666653 33333 445566666666666666555443 4556666666666655
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=4.5e-14 Score=117.55 Aligned_cols=147 Identities=18% Similarity=0.138 Sum_probs=73.9
Q ss_pred EEEEeCCCCcccCcCCCCCCCcCeEecccccccccc-c-hhhhcCCccceEeeccccCcCcCCccccccccccEEEEecc
Q 039007 67 VLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKL-P-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTK 144 (360)
Q Consensus 67 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 144 (360)
.++++++.++.+|..+. +.+++|++++|. ++.+ + ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555555555554332 234555555542 2222 2 22445555555555554333322334555555555555555
Q ss_pred cccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007 145 QKSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK 216 (360)
Q Consensus 145 ~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 216 (360)
.+...+ ..+..+++|++|++++|......+..+..+++|+.|++++|......|..+..+++|++|+++++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 554432 235555555555555554333334445556666666666654444445555556666666665553
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=3.8e-14 Score=118.80 Aligned_cols=146 Identities=22% Similarity=0.150 Sum_probs=68.3
Q ss_pred EEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCC-ccccccccccEEEEeccc
Q 039007 67 VLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTKQ 145 (360)
Q Consensus 67 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~ 145 (360)
.++.+++.+..+|..+. ++|++|++++|...+..|..+..+++|+.|++++|.+ ..+| ..+..+++|+.|++++|.
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc
Confidence 34444444444444332 4455555554433222234444555555555555432 2333 223445555555555555
Q ss_pred ccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCc
Q 039007 146 KSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCK 216 (360)
Q Consensus 146 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 216 (360)
+...+ ..+..+++|+.|++++|. ++.+|..+..+++|+.|++++|......+..+..+++|+.|++.+++
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 44432 223455555555555542 22444445555555555555553332222334555666666665554
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=1.5e-14 Score=129.86 Aligned_cols=126 Identities=17% Similarity=0.102 Sum_probs=56.6
Q ss_pred ccEEEEeCCCCcccCcC-CC-CCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007 65 LRVLDLDDSTIEVLPRE-IG-NLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT 142 (360)
Q Consensus 65 L~~L~l~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 142 (360)
+++|++++|.++.++.. +. .+++|++|++++|......+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 45555555555533332 33 45555555555542222222334555555555555543322222334455555555555
Q ss_pred ccccccc-cccCCCCCCCcEeeccCCCchhhhHhhh----cCCCCccEEEeccC
Q 039007 143 TKQKSLQ-ESGIACLSSLRSLIISHCWNLEYLFEHI----GQLSGLRSLILVDC 191 (360)
Q Consensus 143 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~ 191 (360)
+|.+... +..+..+++|+.|++++|.. +.++..+ ..+++|+.|++++|
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSS
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCC
Confidence 5554433 33445555555555555422 2222221 33455555555554
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=1.8e-16 Score=150.19 Aligned_cols=204 Identities=15% Similarity=0.019 Sum_probs=124.2
Q ss_pred CCCCCcCeEeccccccccccchhhhcCCccceEeecccc-------------CcCcCCccccccccccEEE-Eecccccc
Q 039007 83 GNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCL-------------KLEELPKDIRYLVSLRMFV-VTTKQKSL 148 (360)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~p~~~~~l~~L~~L~-l~~~~~~~ 148 (360)
..+++|+.|++++| .++.+|..++++++|++|++++|. ..+..|..++.+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56788899999887 567888889999999999886653 2223334444555555544 3322211
Q ss_pred ccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccC
Q 039007 149 QESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEG 228 (360)
Q Consensus 149 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 228 (360)
.|+.+.+.+| .+..++. ..|+.|++++|. ++.+|. ++.+++|+.|++++|....
T Consensus 424 ---------~L~~l~l~~n-~i~~l~~-----~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~--------- 477 (567)
T 1dce_A 424 ---------DLRSKFLLEN-SVLKMEY-----ADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRA--------- 477 (567)
T ss_dssp ---------HHHHHHHHHH-HHHHHHH-----TTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCC---------
T ss_pred ---------hhhhhhhhcc-cccccCc-----cCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccc---------
Confidence 1122222221 1122221 247777777773 344665 6677777777777765331
Q ss_pred CCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccc-cccccCccccccccccccccccCCC
Q 039007 229 EGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL-QGSLKDLEALETLLISACRKLSSLP 307 (360)
Q Consensus 229 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~ 307 (360)
.+.....+++|+.|+|++|... .+| .+ ..+++|++|+|++|...... |..+..+++|+.|++++|++.+..+
T Consensus 478 ---lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l--~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 478 ---LPPALAALRCLEVLQASDNALE-NVD-GV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp ---CCGGGGGCTTCCEEECCSSCCC-CCG-GG--TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ---cchhhhcCCCCCEEECCCCCCC-CCc-cc--CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 1223445567777777776533 466 44 77888899998888433333 7888888889999998888655433
Q ss_pred c---cccCCCccceecc
Q 039007 308 E---DIHHLTTLKTLSI 321 (360)
Q Consensus 308 ~---~~~~~~~L~~L~l 321 (360)
. .+..+|+|+.|++
T Consensus 551 ~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 551 IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTHHHHHCTTCSEEEC
T ss_pred HHHHHHHHCcccCccCC
Confidence 2 1233677877753
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=1e-16 Score=151.83 Aligned_cols=178 Identities=14% Similarity=0.098 Sum_probs=121.7
Q ss_pred hccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCC-------------Cc-ccCcCCCCCCCcCeEe-cccc
Q 039007 32 LSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST-------------IE-VLPREIGNLKHMRYLD-LSRY 96 (360)
Q Consensus 32 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~-~~~~~~~~l~~L~~L~-l~~~ 96 (360)
+..+++|+.|++++|.+ ..+|..+.+|++|++|+++++. .. ..|..+..+++|+.|+ ++.+
T Consensus 345 ~~~~~~L~~L~Ls~n~L----~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 345 SATDEQLFRCELSVEKS----TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp CSTTTTSSSCCCCHHHH----HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred cccCccceeccCChhhH----HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence 35677788888887764 3566777777788877775542 22 3445566677777777 4433
Q ss_pred ccccccch------hhhc--CCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCC
Q 039007 97 CQIKKLPN------SICE--LQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCW 168 (360)
Q Consensus 97 ~~~~~~~~------~~~~--l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 168 (360)
....++. .+.. ...|+.|++++|. +..+|. ++.+++|+.|++++|.+..+|..++.+++|+.|++++|.
T Consensus 421 -~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 421 -YLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred -ccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC
Confidence 2222221 1111 2357888888864 445776 788888888888888888777788888888888888874
Q ss_pred chhhhHhhhcCCCCccEEEeccCCCCccc-CcccCCCCCCCEEeecCCcCc
Q 039007 169 NLEYLFEHIGQLSGLRSLILVDCPSLISL-PSAVKCLSSSETLILIDCKSL 218 (360)
Q Consensus 169 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 218 (360)
. +.+| .++.+++|+.|++++|...... |..++.+++|+.|++++|...
T Consensus 498 l-~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 498 L-ENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp C-CCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred C-CCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 4 3455 6788888888888888554443 777888888888888887643
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=3.6e-14 Score=112.99 Aligned_cols=129 Identities=17% Similarity=0.117 Sum_probs=98.6
Q ss_pred CCCccEEEEeCCCCc--ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEE
Q 039007 62 SQFLRVLDLDDSTIE--VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMF 139 (360)
Q Consensus 62 l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 139 (360)
.++|++|++++|.++ .+|..+..+++|++|++++|. ++.+ ..+..+++|+.|++++|...+.+|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 477899999999887 788778888999999998884 5555 557888899999998886665577777778888999
Q ss_pred EEecccccccc--ccCCCCCCCcEeeccCCCchhhhH---hhhcCCCCccEEEeccCC
Q 039007 140 VVTTKQKSLQE--SGIACLSSLRSLIISHCWNLEYLF---EHIGQLSGLRSLILVDCP 192 (360)
Q Consensus 140 ~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~ 192 (360)
++++|.+...+ ..+..+++|+.|++++|......+ ..+..+++|+.|++++|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 98888887754 577788888888888874333222 366777788888777774
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=6e-15 Score=143.90 Aligned_cols=163 Identities=15% Similarity=0.143 Sum_probs=103.0
Q ss_pred CcceEEEeeeccccccchhhhhccCccccEEEEeccCCC-CcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcC
Q 039007 11 KRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDEN-TSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMR 89 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 89 (360)
+++++|++.++.+.. ....+.....|+.+.+...... ......+..+..++.|+.|++++|.+..+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~--~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDE--ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCc--chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 568888888877665 2223333333444443322210 0012456678899999999999999999998888999999
Q ss_pred eEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCc
Q 039007 90 YLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWN 169 (360)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (360)
+|++++| .+..+|..++.+++|+.|+|++|.+. .+|..++.+++|++|++++|.+..+|..++.+++|+.|++++|..
T Consensus 251 ~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred EEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 9999998 55689988999999999999998655 889999999999999999999998888899999999999999976
Q ss_pred hhhhHhhh
Q 039007 170 LEYLFEHI 177 (360)
Q Consensus 170 ~~~~~~~l 177 (360)
....|..+
T Consensus 329 ~~~~p~~~ 336 (727)
T 4b8c_D 329 EKQFLKIL 336 (727)
T ss_dssp CSHHHHHH
T ss_pred CCCChHHH
Confidence 55544433
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=6.4e-14 Score=124.15 Aligned_cols=80 Identities=15% Similarity=0.094 Sum_probs=47.7
Q ss_pred CCCCCccceEEecCccCCCCchhhhhcCCCCCCc-EEecccCCCcccc-cccccCccccccccccccccccCCCccccCC
Q 039007 236 DNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQ-FLGIEDCPNFMAL-QGSLKDLEALETLLISACRKLSSLPEDIHHL 313 (360)
Q Consensus 236 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 313 (360)
+..+.+|+.+.+.++ +..++...+ ..+++|+ .+.+.+ .++.+ +.+|.+|++|+.+++.++.+..--+..|.++
T Consensus 246 F~~~~~L~~l~l~~n--i~~I~~~aF-~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN--LKTIGQRVF-SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred hhCCCCCCEEECCcc--cceehHHHh-hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 444556666666654 444444433 5667777 777765 33333 3567777777777776665443334456667
Q ss_pred Cccceec
Q 039007 314 TTLKTLS 320 (360)
Q Consensus 314 ~~L~~L~ 320 (360)
++|+.++
T Consensus 321 ~~L~~ly 327 (329)
T 3sb4_A 321 VPSKLIY 327 (329)
T ss_dssp CCCCEEE
T ss_pred cchhhhc
Confidence 7777664
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=2.5e-14 Score=111.52 Aligned_cols=126 Identities=15% Similarity=0.105 Sum_probs=60.6
Q ss_pred ccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceE
Q 039007 36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTL 115 (360)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 115 (360)
++|+.|++++|.+. ...++..+..+++|++|++++|.++.+ ..+..+++|++|++++|...+.+|..+..+++|+.|
T Consensus 17 ~~l~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCB--TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCC--hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45555555555542 122333445555555555555555544 445555556666665553333345444455555555
Q ss_pred eeccccCcCc-CCccccccccccEEEEeccccccccc----cCCCCCCCcEeec
Q 039007 116 ILRGCLKLEE-LPKDIRYLVSLRMFVVTTKQKSLQES----GIACLSSLRSLII 164 (360)
Q Consensus 116 ~l~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l 164 (360)
++++|...+. .+..++.+++|+.|++++|.+...+. .+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5555432221 11344455555555555554443322 3344444444443
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=3.7e-14 Score=110.54 Aligned_cols=126 Identities=16% Similarity=0.096 Sum_probs=94.2
Q ss_pred CCCccEEEEeCCCCc--ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEE
Q 039007 62 SQFLRVLDLDDSTIE--VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMF 139 (360)
Q Consensus 62 l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 139 (360)
.++|+.|++++|.++ .+|..+..+++|++|++++| .+..+ ..+..+++|+.|++++|...+.+|..++.+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367889999999887 78888888999999999987 44555 557888899999998886665577777778888888
Q ss_pred EEecccccccc--ccCCCCCCCcEeeccCCCchhhhH---hhhcCCCCccEEEec
Q 039007 140 VVTTKQKSLQE--SGIACLSSLRSLIISHCWNLEYLF---EHIGQLSGLRSLILV 189 (360)
Q Consensus 140 ~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 189 (360)
++++|.+...+ ..+..+++|+.|++++|......+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888877643 667777888888888774333222 356667777777664
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=1e-12 Score=116.42 Aligned_cols=103 Identities=9% Similarity=-0.049 Sum_probs=75.6
Q ss_pred CCCCccEEEeccCCCCcccCc-ccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccc-eEEecCccCCCCc
Q 039007 179 QLSGLRSLILVDCPSLISLPS-AVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQ-KLFVSGLKQLLDL 256 (360)
Q Consensus 179 ~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~~~ 256 (360)
.+++|+.+++.+|. ++.+++ .+.+|++|+.+++.++ +.... ...+..+.+|+ .+.+.+ .+..+
T Consensus 224 ~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~----------~~aF~~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 224 YMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIG----------QRVFSNCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp HCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEEC----------TTTTTTCTTCCEEEEECT--TCCEE
T ss_pred hcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceeh----------HHHhhCChhccEEEEEcc--cceEE
Confidence 48999999999875 445554 5788999999999875 33222 33466778899 999987 45566
Q ss_pred hhhhhcCCCCCCcEEecccCCCcccccccccCccccccccc
Q 039007 257 PQWLLQGSTKTLQFLGIEDCPNFMALQGSLKDLEALETLLI 297 (360)
Q Consensus 257 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 297 (360)
+...+ ..|++|+++++.++.....-+..|.+|++|+.++.
T Consensus 289 ~~~aF-~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 289 EFGAF-MGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTTT-TTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred chhhh-hCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 54443 78999999999887443444558999999998863
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=1e-12 Score=106.85 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=69.7
Q ss_pred cEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccch--hhhcCCccceEeeccccCcCcCCccccccccccEEEEec
Q 039007 66 RVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPN--SICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTT 143 (360)
Q Consensus 66 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 143 (360)
+.++++++.++.+|..+.. +|++|++++| .++.++. .+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4566666666666654432 6666666665 3344432 256666666666666655544455666666666666666
Q ss_pred ccccccc-ccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCC
Q 039007 144 KQKSLQE-SGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCP 192 (360)
Q Consensus 144 ~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 192 (360)
|.+...+ ..+..+++|+.|++++|...+..+..+..+++|+.|++++|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 6665442 235555555555555554433334444455555555555553
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=2.5e-13 Score=108.89 Aligned_cols=133 Identities=17% Similarity=0.144 Sum_probs=97.3
Q ss_pred hhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchh-hhc
Q 039007 30 SLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNS-ICE 108 (360)
Q Consensus 30 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~ 108 (360)
+.+..+++|++|++++|.+... +......++|++|++++|.++.+ ..+..+++|++|++++| .++.+|.. +..
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i----~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 86 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI----ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQA 86 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC----CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHH
T ss_pred HhcCCcCCceEEEeeCCCCchh----HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhc
Confidence 3466788899999998886422 33233344889999999988876 67888889999999887 45555543 478
Q ss_pred CCccceEeeccccCcCcCCc--cccccccccEEEEecccccccccc----CCCCCCCcEeeccCCCc
Q 039007 109 LQSLQTLILRGCLKLEELPK--DIRYLVSLRMFVVTTKQKSLQESG----IACLSSLRSLIISHCWN 169 (360)
Q Consensus 109 l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~~~~----~~~l~~L~~L~l~~~~~ 169 (360)
+++|+.|++++|. ++.+|. .+..+++|+.|++++|.+...+.. +..+++|+.|+++.|..
T Consensus 87 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 8899999998874 455665 677888888888888887766543 66777788887777644
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=3.4e-14 Score=138.57 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=100.0
Q ss_pred ccccEEEEeccCCCCcccchHHHhhcCCCccEEEE-----eCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCC
Q 039007 36 RRVRTILFSINDENTSESFFTSCISKSQFLRVLDL-----DDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQ 110 (360)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l-----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 110 (360)
++++.|++.++.+.. .+..+.....|+.+.+ ..+.+...+..+..++.|+.|++++| .+..+|..+..++
T Consensus 173 ~~~~~l~L~~n~~~~----~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDE----ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCC
T ss_pred CccceEEeeCCCCCc----chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChhhcCCC
Confidence 567888888777532 1222222223333332 22333344667888999999999988 4568888888999
Q ss_pred ccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEecc
Q 039007 111 SLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVD 190 (360)
Q Consensus 111 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 190 (360)
+|+.|+|++|.+. .+|..++.+++|+.|++++|.+..+|..+..+++|++|++++|. ++.+|..++.+++|+.|++++
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCC
Confidence 9999999998555 89988999999999999999999888889999999999999984 467788899999999999999
Q ss_pred CCCCcccCccc
Q 039007 191 CPSLISLPSAV 201 (360)
Q Consensus 191 ~~~~~~~~~~~ 201 (360)
|.....+|..+
T Consensus 326 N~l~~~~p~~~ 336 (727)
T 4b8c_D 326 NPLEKQFLKIL 336 (727)
T ss_dssp SCCCSHHHHHH
T ss_pred CccCCCChHHH
Confidence 98766555544
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=8.5e-15 Score=119.96 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=85.8
Q ss_pred hccCccccEEEEeccCCCC---cccchHHHhhcCCCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhc
Q 039007 32 LSDLRRVRTILFSINDENT---SESFFTSCISKSQFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICE 108 (360)
Q Consensus 32 ~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 108 (360)
+.....++.++++.+.+.. ....++..+..+++|++|++++|.++.+| .+..+++|++|++++| .+..+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-Ccccccchhhc
Confidence 4444455555555444421 11223346777777888888777777766 6777777888887776 44566666666
Q ss_pred CCccceEeeccccCcCcCCccccccccccEEEEecccccccc--ccCCCCCCCcEeeccCCCc
Q 039007 109 LQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQE--SGIACLSSLRSLIISHCWN 169 (360)
Q Consensus 109 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~ 169 (360)
+++|+.|++++|... .+| .+..+++|+.|++++|.+...+ ..+..+++|+.|++.+|..
T Consensus 92 ~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 92 ADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHCSEEEEEEEECC-CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCcCCEEECcCCcCC-cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 777777877776433 344 4667777777777777766543 2566677777777777643
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=4.9e-13 Score=107.24 Aligned_cols=129 Identities=22% Similarity=0.205 Sum_probs=90.0
Q ss_pred hhcCCCccEEEEeCCCCcccCcCCCCC-CCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcc-ccccccc
Q 039007 59 ISKSQFLRVLDLDDSTIEVLPREIGNL-KHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKD-IRYLVSL 136 (360)
Q Consensus 59 ~~~l~~L~~L~l~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L 136 (360)
+.++++|++|++++|.++.+|. +..+ ++|++|++++| .++.+ ..+..+++|+.|++++|.+. .+|.. +..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 5567788889998888887754 4444 48888888887 44445 45778888888888887444 45544 4778888
Q ss_pred cEEEEeccccccccc--cCCCCCCCcEeeccCCCchhhhHh----hhcCCCCccEEEeccCC
Q 039007 137 RMFVVTTKQKSLQES--GIACLSSLRSLIISHCWNLEYLFE----HIGQLSGLRSLILVDCP 192 (360)
Q Consensus 137 ~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~ 192 (360)
+.|++++|.+...+. .+..+++|+.|++++|.. ...+. .+..+++|+.|+++.|.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 888888887766654 667777777777777643 33333 25666777777776664
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=3.7e-12 Score=103.61 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=48.7
Q ss_pred cEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccc
Q 039007 66 RVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQ 145 (360)
Q Consensus 66 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 145 (360)
++++++++.++.+|..+. ++|++|++++| .++.+|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 345555555555554332 35555555554 334455555555555555555543333223345555555555555555
Q ss_pred ccccc-ccCCCCCCCcEeeccCC
Q 039007 146 KSLQE-SGIACLSSLRSLIISHC 167 (360)
Q Consensus 146 ~~~~~-~~~~~l~~L~~L~l~~~ 167 (360)
+..++ ..+..+++|+.|++++|
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhCCCCCCCEEECCCC
Confidence 54432 23444444444444444
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=2.5e-12 Score=104.54 Aligned_cols=105 Identities=24% Similarity=0.180 Sum_probs=64.8
Q ss_pred CccEEEEeCCCCcccCcC--CCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEE
Q 039007 64 FLRVLDLDDSTIEVLPRE--IGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVV 141 (360)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 141 (360)
.|++|++++|.++.++.. +..+++|++|++++|...+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 566666666666655432 566666666666666443333555666666666666666544444445666667777777
Q ss_pred eccccccc-cccCCCCCCCcEeeccCCC
Q 039007 142 TTKQKSLQ-ESGIACLSSLRSLIISHCW 168 (360)
Q Consensus 142 ~~~~~~~~-~~~~~~l~~L~~L~l~~~~ 168 (360)
++|.+... +..+..+++|+.|++++|.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 76666544 4556666777777776664
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=4.9e-12 Score=102.87 Aligned_cols=105 Identities=27% Similarity=0.290 Sum_probs=65.7
Q ss_pred CCccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCccccccccccEEEEe
Q 039007 63 QFLRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVT 142 (360)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 142 (360)
+.|++|++++|.++.+|..+..+++|++|++++|...+..+..|..+++|+.|++++|.+....|..+..+++|+.|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 35666777777666666666666777777777663333333456667777777777664444334456667777777777
Q ss_pred ccccccccc-cCCCCCCCcEeeccCC
Q 039007 143 TKQKSLQES-GIACLSSLRSLIISHC 167 (360)
Q Consensus 143 ~~~~~~~~~-~~~~l~~L~~L~l~~~ 167 (360)
+|.+..++. .+..+++|+.|++.+|
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCeeChhhhhcCccccEEEeCCC
Confidence 776665543 4556666667766665
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=3.3e-14 Score=116.42 Aligned_cols=149 Identities=20% Similarity=0.256 Sum_probs=111.6
Q ss_pred hhcCCCccEEEEeCCCCc-------ccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcccc
Q 039007 59 ISKSQFLRVLDLDDSTIE-------VLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKDIR 131 (360)
Q Consensus 59 ~~~l~~L~~L~l~~~~~~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~ 131 (360)
+.....++.++++.+.+. .+|..+..+++|++|++++| .+..+| .+..+++|+.|++++|. +..+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhh
Confidence 344445555555544443 44447888999999999988 556677 68899999999999975 447888788
Q ss_pred ccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhh-HhhhcCCCCccEEEeccCCCCcccCc----------c
Q 039007 132 YLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYL-FEHIGQLSGLRSLILVDCPSLISLPS----------A 200 (360)
Q Consensus 132 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~----------~ 200 (360)
.+++|+.|++++|.+...+ .+..+++|+.|++++|.....- ...+..+++|+.|++++|+.....|. .
T Consensus 91 ~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred cCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 8899999999999988775 6778899999999987543321 24688899999999999865444333 2
Q ss_pred cCCCCCCCEEe
Q 039007 201 VKCLSSSETLI 211 (360)
Q Consensus 201 ~~~~~~L~~L~ 211 (360)
+..+++|+.|+
T Consensus 170 ~~~l~~L~~Ld 180 (198)
T 1ds9_A 170 VKRLPNLKKLD 180 (198)
T ss_dssp HHHCSSCSEEC
T ss_pred HHhCCCcEEEC
Confidence 56788888886
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.28 E-value=3.4e-10 Score=102.53 Aligned_cols=266 Identities=11% Similarity=0.117 Sum_probs=162.0
Q ss_pred hccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccc-hhhhcC
Q 039007 32 LSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICEL 109 (360)
Q Consensus 32 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l 109 (360)
+..+..++.+.+-.+- ...-...|.++ +|+.+.+..+ ++.++. .|..+ +|+.+.+.. .+..++ ..|..|
T Consensus 109 ~~~~~~l~~i~ip~~i----~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c 179 (401)
T 4fdw_A 109 TEILKGYNEIILPNSV----KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYC 179 (401)
T ss_dssp EEECSSCSEEECCTTC----CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTC
T ss_pred EEecCCccEEEECCcc----CEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCc
Confidence 4455667777776432 23334456665 6888887665 555544 35554 688888874 344443 567788
Q ss_pred CccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhH-hhhcCCCCccEEEe
Q 039007 110 QSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLF-EHIGQLSGLRSLIL 188 (360)
Q Consensus 110 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l 188 (360)
++|+.+++..+ .+..++...-.+.+|+.+.+..+-.......+.+|++|+.+.+..+ ++.+. ..+.. .+|+.+.+
T Consensus 180 ~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 180 YNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE
T ss_pred ccCCeeecCCC-cceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe
Confidence 88888888775 4555665443467888888875533333467788888888888763 23222 22333 67888888
Q ss_pred ccCCCCccc-CcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCC
Q 039007 189 VDCPSLISL-PSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKT 267 (360)
Q Consensus 189 ~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 267 (360)
..+ +..+ ...+..|++|+.+.+.++....... ..-....+..|.+|+.+.+... +..++...+ .+|++
T Consensus 256 p~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~------~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF-~~c~~ 324 (401)
T 4fdw_A 256 PNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPE------AMIHPYCLEGCPKLARFEIPES--IRILGQGLL-GGNRK 324 (401)
T ss_dssp ETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTT------CEECTTTTTTCTTCCEECCCTT--CCEECTTTT-TTCCS
T ss_pred CCC--ccEEChhHhhCCCCCCEEEeCCccccCCcc------cEECHHHhhCCccCCeEEeCCc--eEEEhhhhh-cCCCC
Confidence 543 3344 3456778888888887654320000 0001234556677888887742 445554443 67788
Q ss_pred CcEEecccCCCcccc-cccccCccccccccccccccccCCCccccCCC-ccceecccCC
Q 039007 268 LQFLGIEDCPNFMAL-QGSLKDLEALETLLISACRKLSSLPEDIHHLT-TLKTLSIKEC 324 (360)
Q Consensus 268 L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~c 324 (360)
|+.+.|..+ ++.+ ..+|.+| +|+.+++.++.........+..++ +++.|.+...
T Consensus 325 L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 325 VTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred ccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 888888653 4433 4467777 888888888764443344455564 6777777654
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.26 E-value=3.2e-11 Score=96.62 Aligned_cols=104 Identities=23% Similarity=0.285 Sum_probs=48.0
Q ss_pred CCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCCccccccccccEEE
Q 039007 63 QFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFV 140 (360)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 140 (360)
++|++|++++|.++.++. .+..+++|++|++++| .++.++ ..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 345555555555554433 2345555555555554 223333 2234555555555555433322222344455555555
Q ss_pred Eecccccccccc-CCCCCCCcEeeccCC
Q 039007 141 VTTKQKSLQESG-IACLSSLRSLIISHC 167 (360)
Q Consensus 141 l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 167 (360)
+++|.+...+.. +..+++|+.|++++|
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 555544443322 234444444444444
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.26 E-value=1.6e-11 Score=98.47 Aligned_cols=128 Identities=19% Similarity=0.186 Sum_probs=94.3
Q ss_pred ceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcCeE
Q 039007 13 VRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMRYL 91 (360)
Q Consensus 13 l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L 91 (360)
.+.+++.++.+.. ++.. -.++|++|++++|.+. ...+..+..+++|++|++++|.++.++.. +..+++|++|
T Consensus 9 ~~~l~~~~~~l~~--~p~~--~~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSKGLTS--VPTG--IPSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSSCCSS--CCTT--CCTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEecCCCCcc--CCCC--CCCCCcEEEeCCCccc---EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 4567777777665 2222 2368899999998873 34445578889999999999998876654 6888999999
Q ss_pred eccccccccccc-hhhhcCCccceEeeccccCcCcCCcc-ccccccccEEEEeccccccc
Q 039007 92 DLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELPKD-IRYLVSLRMFVVTTKQKSLQ 149 (360)
Q Consensus 92 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~ 149 (360)
++++|. ++.++ ..+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+...
T Consensus 82 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 82 YLHENK-LQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ECCCCC-ccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeecc
Confidence 999884 44554 44678899999999987544 55544 57889999999998876543
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.26 E-value=2e-10 Score=104.02 Aligned_cols=245 Identities=10% Similarity=0.103 Sum_probs=161.0
Q ss_pred hhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCeEeccccccccccchhhh
Q 039007 29 SSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRYCQIKKLPNSIC 107 (360)
Q Consensus 29 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 107 (360)
..+|.++ +|+.+.+..+ + ...-...|.++ +|+.+.+.. .++.++ ..|..|++|+.+++..+ .+..++....
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i---~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF 200 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-L---KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTF 200 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-C---CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTT
T ss_pred HhhcccC-CccEEEeCCC-c---cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhE
Confidence 4566776 6888888755 2 23333456665 588888875 556554 45788899999999865 5666665444
Q ss_pred cCCccceEeeccccCcCcCC-ccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEE
Q 039007 108 ELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSL 186 (360)
Q Consensus 108 ~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 186 (360)
.+.+|+.+.+..+ +..++ ..+..+++|+.+.+..+-.......+.+ ++|+.+.+..+ ....-...+..|++|+.+
T Consensus 201 ~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 201 VYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEV 276 (401)
T ss_dssp TTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEE
T ss_pred eecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEE
Confidence 4788888888753 44444 4567888899888877533333345555 78888888542 222224557788999999
Q ss_pred EeccCCCC----ccc-CcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhh
Q 039007 187 ILVDCPSL----ISL-PSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLL 261 (360)
Q Consensus 187 ~l~~~~~~----~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 261 (360)
.+.++... ..+ ...+..|++|+.+.+.+. +.... ...+..|.+|+.+.|..+ +..+....+
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~----------~~aF~~c~~L~~l~lp~~--l~~I~~~aF 342 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILG----------QGLLGGNRKVTQLTIPAN--VTQINFSAF 342 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEEC----------TTTTTTCCSCCEEEECTT--CCEECTTSS
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEh----------hhhhcCCCCccEEEECcc--ccEEcHHhC
Confidence 98776432 122 345778899999988742 22221 223556778999999654 455554444
Q ss_pred cCCCCCCcEEecccCCCcccccccccCcc-ccccccccccc
Q 039007 262 QGSTKTLQFLGIEDCPNFMALQGSLKDLE-ALETLLISACR 301 (360)
Q Consensus 262 ~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~l~~~~ 301 (360)
..+ +|+++.+.++.........|.+++ +++.|++..+.
T Consensus 343 -~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 343 -NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp -SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred -CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 566 899999998854444455677774 67888887654
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=6.3e-10 Score=88.69 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=55.4
Q ss_pred cEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcc-ccccccccEEEEecc
Q 039007 66 RVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKD-IRYLVSLRMFVVTTK 144 (360)
Q Consensus 66 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~ 144 (360)
+.++++++.++.+|..+. ++|++|++++|...+..|..+..+++|+.|++++|. +..+|.. +..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 456666666666665443 566666666653333334455666666666666653 3334432 456666666666666
Q ss_pred ccccccc-cCCCCCCCcEeeccCC
Q 039007 145 QKSLQES-GIACLSSLRSLIISHC 167 (360)
Q Consensus 145 ~~~~~~~-~~~~l~~L~~L~l~~~ 167 (360)
.+..++. .+..+++|+.|++.+|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred ccceeCHHHhccccCCCEEEeCCC
Confidence 6655443 2555666666666555
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=5.9e-10 Score=88.53 Aligned_cols=100 Identities=19% Similarity=0.143 Sum_probs=56.6
Q ss_pred ccEEEEeCCCCcccCcCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCC-ccccccccccEEEEec
Q 039007 65 LRVLDLDDSTIEVLPREIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTT 143 (360)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~ 143 (360)
.+.++++++.++.+|..+. ++|++|++++|...+..|..+..+++|++|++++|.+. .+| ..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCC
Confidence 3556666666666665442 56666666665333333445666666666666665433 333 2345666666666666
Q ss_pred cccccccc-cCCCCCCCcEeeccCC
Q 039007 144 KQKSLQES-GIACLSSLRSLIISHC 167 (360)
Q Consensus 144 ~~~~~~~~-~~~~l~~L~~L~l~~~ 167 (360)
|.+..++. .+..+++|+.|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 66655433 3555666666666655
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.05 E-value=9e-09 Score=93.24 Aligned_cols=274 Identities=12% Similarity=0.113 Sum_probs=134.5
Q ss_pred hhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCeEeccccccccccc---
Q 039007 28 FSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRYLDLSRYCQIKKLP--- 103 (360)
Q Consensus 28 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--- 103 (360)
-..+|.+|.+|+++.+..+ + ...-..+|.+|.+|+.+.+..+ ++.++ ..+..+..|+.+.+... +..+.
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i---~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~a 135 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-V---REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEA 135 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-C---CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTT
T ss_pred HHHHhhCCCCceEEEeCCC-c---cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeeccee
Confidence 3567999999999999743 2 2333456999999999999754 45443 34677777777666532 22111
Q ss_pred --------------------hhhhcCCccceEeeccccCcCcCC-ccccccccccEEEEeccccccccccCCCCCCCcEe
Q 039007 104 --------------------NSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSL 162 (360)
Q Consensus 104 --------------------~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 162 (360)
..|..+.+|+.+.+..+ ...++ ..+..+.+|+.+.+..+-.......+.++..|+.+
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENM 213 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBC
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceEeCchhhcccccccee
Confidence 22344455555555432 11222 22344455555554443222222344445555554
Q ss_pred eccCCCchhhhHhhhcCCCCccEEEeccCCCCccc-CcccCCCCCCCEEeecCCcCcccccccccc-----------CCC
Q 039007 163 IISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISL-PSAVKCLSSSETLILIDCKSLNLNLNIEME-----------GEG 230 (360)
Q Consensus 163 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----------~~~ 230 (360)
.+..+. ..+......+.+|+.+.+... ...+ ...+..+..++.+.+....... ....+. ...
T Consensus 214 ~~~~~~--~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i--~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 214 EFPNSL--YYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRI--GGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp CCCTTC--CEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEE--CSCTTTTCTTCCEEEECSSE
T ss_pred ecCCCc--eEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCccee--eccccccccccceeccCcee
Confidence 443321 111111223345555555332 1111 1234455566666554321100 000000 000
Q ss_pred CCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccc-cccccCccccccccccccccccCC-Cc
Q 039007 231 SHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL-QGSLKDLEALETLLISACRKLSSL-PE 308 (360)
Q Consensus 231 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~ 308 (360)
-....+..+.+|+.+.+..+ +..++...+ ..|++|+.+.+... ++.+ ..+|.+|++|+.+++..+ ++.+ ..
T Consensus 288 i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF-~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~ 360 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS--VKFIGEEAF-ESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN 360 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT--CCEECTTTT-TTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTT
T ss_pred eccccccccccccccccccc--cceechhhh-cCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHH
Confidence 01122344556666666542 334433332 56677777777542 4433 345677777777777554 2222 34
Q ss_pred cccCCCccceecccC
Q 039007 309 DIHHLTTLKTLSIKE 323 (360)
Q Consensus 309 ~~~~~~~L~~L~l~~ 323 (360)
.+.+|++|+.+.+..
T Consensus 361 aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 361 AFQGCINLKKVELPK 375 (394)
T ss_dssp TBTTCTTCCEEEEEG
T ss_pred HhhCCCCCCEEEECC
Confidence 466677777777643
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.03 E-value=3.6e-11 Score=107.93 Aligned_cols=161 Identities=12% Similarity=0.012 Sum_probs=103.1
Q ss_pred CccccEEEEeccCCCCc-ccchHHHhh-cCCCccEEEEeCCCCc--ccCcCCCCCCCcCeEeccccccccccchhh----
Q 039007 35 LRRVRTILFSINDENTS-ESFFTSCIS-KSQFLRVLDLDDSTIE--VLPREIGNLKHMRYLDLSRYCQIKKLPNSI---- 106 (360)
Q Consensus 35 ~~~L~~L~l~~~~~~~~-~~~~~~~~~-~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---- 106 (360)
.++|++|++++|.++.. ...+...+. .++.|++|++++|.++ .+......+++|++|++++|.........+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35678888888876411 112223333 2367888888888876 222222345678888888874433222223
Q ss_pred -hcCCccceEeeccccCcC----cCCccccccccccEEEEeccccccc-----cccCCCCCCCcEeeccCCCchh----h
Q 039007 107 -CELQSLQTLILRGCLKLE----ELPKDIRYLVSLRMFVVTTKQKSLQ-----ESGIACLSSLRSLIISHCWNLE----Y 172 (360)
Q Consensus 107 -~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~----~ 172 (360)
...++|+.|++++|.+.. .++..+..+++|++|++++|.+... ...+...++|+.|++++|.... .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 235778888888875432 2334456678888888888877542 3456677889999999886543 3
Q ss_pred hHhhhcCCCCccEEEeccCCCCc
Q 039007 173 LFEHIGQLSGLRSLILVDCPSLI 195 (360)
Q Consensus 173 ~~~~l~~l~~L~~L~l~~~~~~~ 195 (360)
+...+...+.|++|++++|....
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 45556677899999999987544
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=1.3e-09 Score=86.60 Aligned_cols=103 Identities=23% Similarity=0.165 Sum_probs=67.5
Q ss_pred ccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc-CcCCCCCCCcCeEeccccccccccch-hhhcCCccceE
Q 039007 38 VRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL-PREIGNLKHMRYLDLSRYCQIKKLPN-SICELQSLQTL 115 (360)
Q Consensus 38 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L 115 (360)
.++++++++.+...... + .+.|++|++++|.++.+ |..+..+++|++|++++| .+..++. .+..+++|+.|
T Consensus 11 ~~~l~~s~n~l~~ip~~----~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG----I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSCCSSCCSC----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcCccCcc----C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEE
Confidence 46677777765322221 1 25677888888877755 455777888888888877 4445543 45677888888
Q ss_pred eeccccCcCcCCccccccccccEEEEeccccc
Q 039007 116 ILRGCLKLEELPKDIRYLVSLRMFVVTTKQKS 147 (360)
Q Consensus 116 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 147 (360)
++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88876444333334777888888888877654
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.99 E-value=1.6e-08 Score=91.69 Aligned_cols=278 Identities=13% Similarity=0.087 Sum_probs=156.8
Q ss_pred CCCcceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCC--------------
Q 039007 9 IPKRVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST-------------- 74 (360)
Q Consensus 9 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------- 74 (360)
-...++.+.|.. .+.. .-..+|.+|++|+.+++..+- ...-...|.+|..|+.+.+..+-
T Consensus 69 ~c~~L~~i~lp~-~i~~-I~~~aF~~c~~L~~i~lp~~l----~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVRE-IGEFAFENCSKLEIINIPDSV----KMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TCTTEEEEECCT-TCCE-ECTTTTTTCTTCCEECCCTTC----CEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred CCCCceEEEeCC-CccC-cchhHhhCCCCCcEEEeCCCc----eEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 345678888753 2433 345789999999999987542 22223456777777665543221
Q ss_pred -------Cccc-CcCCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccccCcCcCC-ccccccccccEEEEecc
Q 039007 75 -------IEVL-PREIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTK 144 (360)
Q Consensus 75 -------~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~ 144 (360)
...+ ...|..|.+|+.+.+... ...++ ..|..+.+|+.+.+..+ +..++ ..+..+..|+.+.+..+
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC
Confidence 1111 234677888888888753 33333 45677888888888653 22222 23445555555544333
Q ss_pred cccc----------------------ccccCCCCCCCcEeeccCCCchhhhHhhhcCCCCccEEEeccCCCCcccCcccC
Q 039007 145 QKSL----------------------QESGIACLSSLRSLIISHCWNLEYLFEHIGQLSGLRSLILVDCPSLISLPSAVK 202 (360)
Q Consensus 145 ~~~~----------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 202 (360)
.... ....+..+..++.+.+..+ ........+..+..++.+...... .....+.
T Consensus 219 ~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~ 294 (394)
T 4fs7_A 219 LYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFY 294 (394)
T ss_dssp CCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTT
T ss_pred ceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---ecccccc
Confidence 2211 1123334444444444332 111111223344555544443321 1112345
Q ss_pred CCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccc
Q 039007 203 CLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL 282 (360)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 282 (360)
.+.+|+.+.+.+. +...+ ...+..|.+|+.+.+... +..+....+ .+|.+|+.+.+..+ ++.+
T Consensus 295 ~~~~L~~i~l~~~--i~~I~----------~~aF~~c~~L~~i~lp~~--v~~I~~~aF-~~c~~L~~i~lp~~--l~~I 357 (394)
T 4fs7_A 295 GCSSLTEVKLLDS--VKFIG----------EEAFESCTSLVSIDLPYL--VEEIGKRSF-RGCTSLSNINFPLS--LRKI 357 (394)
T ss_dssp TCTTCCEEEECTT--CCEEC----------TTTTTTCTTCCEECCCTT--CCEECTTTT-TTCTTCCEECCCTT--CCEE
T ss_pred ccccccccccccc--cceec----------hhhhcCCCCCCEEEeCCc--ccEEhHHhc-cCCCCCCEEEECcc--ccEe
Confidence 6677777777542 21111 223556788999998643 555654443 78899999999764 4444
Q ss_pred -cccccCccccccccccccccccCCCccccCCCcccee
Q 039007 283 -QGSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTL 319 (360)
Q Consensus 283 -~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 319 (360)
..+|.+|++|+.+++..+ ++.+...+.+|++|+.+
T Consensus 358 ~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred hHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 457999999999999764 33344567788888775
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=1.2e-09 Score=87.01 Aligned_cols=103 Identities=14% Similarity=0.194 Sum_probs=82.4
Q ss_pred ceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCcC-CCCCCCcCeE
Q 039007 13 VRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPRE-IGNLKHMRYL 91 (360)
Q Consensus 13 l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L 91 (360)
-+.+++.++.+.. ++..+. ++|++|++++|.+ ....+..|.++++|++|++++|.++.+|.. +..+++|++|
T Consensus 14 ~~~l~~~~n~l~~--iP~~~~--~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 14 QTLVNCQNIRLAS--VPAGIP--TDKQRLWLNNNQI---TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SSEEECCSSCCSS--CCSCCC--TTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcEEEeCCCCCCc--cCCCcC--CCCcEEEeCCCCc---cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 3578888888765 333343 7899999999987 445566789999999999999999988765 5889999999
Q ss_pred eccccccccccch-hhhcCCccceEeeccccCc
Q 039007 92 DLSRYCQIKKLPN-SICELQSLQTLILRGCLKL 123 (360)
Q Consensus 92 ~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~ 123 (360)
++++| .+..+|. .+..+++|+.|++++|.+.
T Consensus 87 ~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ECCCC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 99988 5566665 4888999999999997443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.97 E-value=8e-11 Score=105.64 Aligned_cols=183 Identities=15% Similarity=0.038 Sum_probs=122.1
Q ss_pred cCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcc-----cCcCCC-CCCCcCeEeccccccccccchhh-
Q 039007 34 DLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEV-----LPREIG-NLKHMRYLDLSRYCQIKKLPNSI- 106 (360)
Q Consensus 34 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~- 106 (360)
.++..+.+++..|-....+..+.. .-.+.|++|++++|.++. +...+. ..++|++|++++|.........+
T Consensus 45 ~~~~~~~lnl~~cl~e~~~~~l~~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 122 (372)
T 3un9_A 45 VLPPSELLDHLFFHYEFQNQRFSA--EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL 122 (372)
T ss_dssp CSCHHHHHHHHHHHHHHHTHHHHH--HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTH
T ss_pred CCChhhhHHHHHHHHHhcCHHHHH--HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHH
Confidence 344455555555432111222222 234679999999999872 222333 34799999999985433323223
Q ss_pred hcCCccceEeeccccCcCcCCccc-----cccccccEEEEeccccccc-----cccCCCCCCCcEeeccCCCchh----h
Q 039007 107 CELQSLQTLILRGCLKLEELPKDI-----RYLVSLRMFVVTTKQKSLQ-----ESGIACLSSLRSLIISHCWNLE----Y 172 (360)
Q Consensus 107 ~~l~~L~~L~l~~~~~~~~~p~~~-----~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~----~ 172 (360)
..+++|+.|++++|.+...-...+ ...++|+.|++++|.+... ...+..+++|++|++++|.... .
T Consensus 123 ~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~ 202 (372)
T 3un9_A 123 PVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL 202 (372)
T ss_dssp HHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred HHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence 356789999999986543222222 2467899999999987642 3445678899999999987543 3
Q ss_pred hHhhhcCCCCccEEEeccCCCCc----ccCcccCCCCCCCEEeecCCcCc
Q 039007 173 LFEHIGQLSGLRSLILVDCPSLI----SLPSAVKCLSSSETLILIDCKSL 218 (360)
Q Consensus 173 ~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~ 218 (360)
++..+...++|++|++++|.... .+...+..+++|++|++++|...
T Consensus 203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 46667788999999999997643 34445566789999999998643
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.95 E-value=1.2e-07 Score=85.87 Aligned_cols=271 Identities=10% Similarity=0.163 Sum_probs=154.4
Q ss_pred hhhhccCc-cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCC---CcccC-cCCCCCCCcCeEeccccccccccc
Q 039007 29 SSLLSDLR-RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDST---IEVLP-REIGNLKHMRYLDLSRYCQIKKLP 103 (360)
Q Consensus 29 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~ 103 (360)
..+|.+|+ .|+++.+-.+ + ...-..+|.+|.+|+.+.+..+. ++.+. ..|..|.+|+.+.+..+ +..++
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-v---t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~ 129 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-V---TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEID 129 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-C---CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEEC
T ss_pred HhhccCCCCcCEEEEECCC-e---eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceeh
Confidence 45677775 5888888643 2 22334568888888888887653 44553 34677788887777643 44443
Q ss_pred -hhhhcCCccceEeeccccCcCcCC-ccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchhhhHhhhcCCC
Q 039007 104 -NSICELQSLQTLILRGCLKLEELP-KDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLEYLFEHIGQLS 181 (360)
Q Consensus 104 -~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 181 (360)
..+..+.+|+.+.+... ...++ ..+..+.+|+.+.+..+........+ ....|+.+.+.... .......+..+.
T Consensus 130 ~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF-~~~~l~~i~ip~~~-~~i~~~af~~c~ 205 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDSVTAIEERAF-TGTALTQIHIPAKV-TRIGTNAFSECF 205 (394)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCEECTTTT-TTCCCSEEEECTTC-CEECTTTTTTCT
T ss_pred hhhhhhhcccccccccce--eeeecccceecccccccccccceeeEeccccc-cccceeEEEECCcc-cccccchhhhcc
Confidence 44667788888877542 22222 23556667777666544222222222 23456666554321 111112233444
Q ss_pred CccEEEeccCC-----------------------------------CCccc-CcccCCCCCCCEEeecCCcCcccccccc
Q 039007 182 GLRSLILVDCP-----------------------------------SLISL-PSAVKCLSSSETLILIDCKSLNLNLNIE 225 (360)
Q Consensus 182 ~L~~L~l~~~~-----------------------------------~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 225 (360)
.++........ ....+ ...+..|..|+.+.+.+.... .
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~--I---- 279 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS--I---- 279 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE--E----
T ss_pred ccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce--e----
Confidence 44444332110 00011 123455666777666432111 0
Q ss_pred ccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccc-cccccCcccccccccccccccc
Q 039007 226 MEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL-QGSLKDLEALETLLISACRKLS 304 (360)
Q Consensus 226 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~ 304 (360)
....+..+..|+.+.+.. .+..++...+ ..|.+|+++.+..+ ++.+ ..+|.+|.+|+.+.|..+ ++
T Consensus 280 ------~~~aF~~c~~L~~i~l~~--~i~~I~~~aF-~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s--v~ 346 (394)
T 4gt6_A 280 ------GTGAFMNCPALQDIEFSS--RITELPESVF-AGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS--VT 346 (394)
T ss_dssp ------CTTTTTTCTTCCEEECCT--TCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT--CC
T ss_pred ------cCcccccccccccccCCC--cccccCceee-cCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc--cC
Confidence 122345667888888853 3455555444 67889999999753 4444 447889999999999653 44
Q ss_pred CC-CccccCCCccceecccCChhHH
Q 039007 305 SL-PEDIHHLTTLKTLSIKECPALW 328 (360)
Q Consensus 305 ~~-~~~~~~~~~L~~L~l~~c~~~~ 328 (360)
.+ ...|.+|++|+.+.+.++....
T Consensus 347 ~I~~~aF~~C~~L~~i~~~~~~~~~ 371 (394)
T 4gt6_A 347 KIPESAFSNCTALNNIEYSGSRSQW 371 (394)
T ss_dssp BCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred EEhHhHhhCCCCCCEEEECCceeeh
Confidence 44 3457889999999998875433
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=8.3e-09 Score=91.86 Aligned_cols=106 Identities=9% Similarity=0.137 Sum_probs=60.0
Q ss_pred CcceEEEeeeccccccc-------hhhhhccCccccEEEEeccCCC------CcccchHHHhhcCCCccEEEEeCCCCcc
Q 039007 11 KRVRHLSFVSASASRND-------FSSLLSDLRRVRTILFSINDEN------TSESFFTSCISKSQFLRVLDLDDSTIEV 77 (360)
Q Consensus 11 ~~l~~L~l~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 77 (360)
.+|++|.+......+.. +..+..++++|+.|.+...... .....+...+..+++|+.|.++++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 45777777755443111 1233556778888887654321 0012355667777888888887763223
Q ss_pred cCcCCCCCCCcCeEeccccccccccchhhh--cCCccceEeec
Q 039007 78 LPREIGNLKHMRYLDLSRYCQIKKLPNSIC--ELQSLQTLILR 118 (360)
Q Consensus 78 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~ 118 (360)
++. +. +++|+.|++..|.........+. .+++|+.|+|.
T Consensus 187 l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 187 IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 333 32 67788888876643322222333 57778887774
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=1.9e-08 Score=89.47 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=45.9
Q ss_pred hhcCCCccEEEEeC-CCCcccC-cCCCCCCCcCeEeccccccccccchhhhcCCccceEeeccccCcCcCCcc-cccccc
Q 039007 59 ISKSQFLRVLDLDD-STIEVLP-REIGNLKHMRYLDLSRYCQIKKLPNSICELQSLQTLILRGCLKLEELPKD-IRYLVS 135 (360)
Q Consensus 59 ~~~l~~L~~L~l~~-~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~ 135 (360)
+..+++|++|++++ |.+..+| ..|..+++|++|++++|...+..|..|..+++|+.|+|++|.+. .+|.. +..++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~- 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS- 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-
Confidence 55556666666664 5566444 34556666666666665333333344556666666666665332 34433 22232
Q ss_pred ccEEEEeccccc
Q 039007 136 LRMFVVTTKQKS 147 (360)
Q Consensus 136 L~~L~l~~~~~~ 147 (360)
|+.|++.+|.+.
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 666666555443
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=3.8e-08 Score=87.60 Aligned_cols=66 Identities=11% Similarity=0.002 Sum_probs=37.1
Q ss_pred CCccceEEecCccCCCCchhhhh-cCCCCCCcEEecccCCCcc----cccccccCcccccccccccccccc
Q 039007 239 RTHLQKLFVSGLKQLLDLPQWLL-QGSTKTLQFLGIEDCPNFM----ALQGSLKDLEALETLLISACRKLS 304 (360)
Q Consensus 239 ~~~L~~L~L~~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~ 304 (360)
+++|+.|+|.+|......+..+. ...+++|++|+|+.|.... .++..+..+++|+.|++++|.+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 45566666655543322222221 1356778888887764332 234444567888888888876544
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.73 E-value=7.2e-07 Score=80.67 Aligned_cols=285 Identities=9% Similarity=0.055 Sum_probs=168.1
Q ss_pred cceEEEeeeccccccchhhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCe
Q 039007 12 RVRHLSFVSASASRNDFSSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRY 90 (360)
Q Consensus 12 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~ 90 (360)
.++++.+-.. ++. .-..+|.+|.+|+.+.+..+.-......-...|..|..|+.+.+..+ ++.++ ..+..+.+|+.
T Consensus 65 ~L~sI~iP~s-vt~-Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VTE-IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CCE-ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-eeE-EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 4677777542 333 34578999999999999876411112233456888888887766544 44443 35778888888
Q ss_pred Eecccccccccc-chhhhcCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCC-
Q 039007 91 LDLSRYCQIKKL-PNSICELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCW- 168 (360)
Q Consensus 91 L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~- 168 (360)
+.+... ...+ ...+..+.+|+.+.+..+ +..+....-...+|+.+.+..+........+..+.++.........
T Consensus 142 i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 142 VTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESY 217 (394)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSS
T ss_pred ccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcccccccchhhhccccceeccccccc
Confidence 888643 3333 345677888888887653 3333332223346777766554333333444555555444322110
Q ss_pred ----------------------------------chh-hhHhhhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeec
Q 039007 169 ----------------------------------NLE-YLFEHIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILI 213 (360)
Q Consensus 169 ----------------------------------~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 213 (360)
.+. .-...+..|..|+.+.+.... ..--...+.+|+.|+.+.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC
T ss_pred ccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC
Confidence 001 112345678888888886532 12223446788999999885
Q ss_pred CCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCcccc-cccccCcccc
Q 039007 214 DCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMAL-QGSLKDLEAL 292 (360)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L 292 (360)
.. +.... ...+..|.+|+.+.|..+ +..+....+ ..|.+|+++.+..+ ++.+ ..+|.+|++|
T Consensus 297 ~~--i~~I~----------~~aF~~c~~L~~i~lp~~--v~~I~~~aF-~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 297 SR--ITELP----------ESVFAGCISLKSIDIPEG--ITQILDDAF-AGCEQLERIAIPSS--VTKIPESAFSNCTAL 359 (394)
T ss_dssp TT--CCEEC----------TTTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEEECTT--CCBCCGGGGTTCTTC
T ss_pred Cc--ccccC----------ceeecCCCCcCEEEeCCc--ccEehHhHh-hCCCCCCEEEECcc--cCEEhHhHhhCCCCC
Confidence 32 22111 234566789999999753 455554443 78899999999753 4544 4579999999
Q ss_pred ccccccccccccCCCccccCCCccceecccCC
Q 039007 293 ETLLISACRKLSSLPEDIHHLTTLKTLSIKEC 324 (360)
Q Consensus 293 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 324 (360)
+.+++.++...- ..+..+.+|+.+.+..+
T Consensus 360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CEEEESSCHHHH---HTCBCCCCC--------
T ss_pred CEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 999999875322 33556788888877543
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.61 E-value=6.7e-08 Score=85.86 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=80.4
Q ss_pred eEEEeeec-cccccchhhhhccCccccEEEEec-cCCCCcccchHHHhhcCCCccEEEEeCCCCcccC-cCCCCCCCcCe
Q 039007 14 RHLSFVSA-SASRNDFSSLLSDLRRVRTILFSI-NDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP-REIGNLKHMRY 90 (360)
Q Consensus 14 ~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~ 90 (360)
..++..++ .+.. ++. +..+++|++|+|++ |.+ ....+..|.++++|++|+|++|.++.++ ..|..+++|++
T Consensus 11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCC---CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence 34566666 6665 555 99999999999996 887 5555677999999999999999999665 46899999999
Q ss_pred EeccccccccccchhhhcCCccceEeeccccCc
Q 039007 91 LDLSRYCQIKKLPNSICELQSLQTLILRGCLKL 123 (360)
Q Consensus 91 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 123 (360)
|++++| .+..+|..+.....|+.|++.+|.+.
T Consensus 85 L~l~~N-~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 85 LNLSFN-ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp EECCSS-CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred EeCCCC-ccceeCHHHcccCCceEEEeeCCCcc
Confidence 999988 56667654444334999999987543
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.53 E-value=2.5e-08 Score=78.46 Aligned_cols=89 Identities=13% Similarity=0.217 Sum_probs=59.9
Q ss_pred CccceEEecCccCCCCchhhhhcCCCCCCcEEecccCCCccc-ccccccC----ccccccccccccccccC-CCccccCC
Q 039007 240 THLQKLFVSGLKQLLDLPQWLLQGSTKTLQFLGIEDCPNFMA-LQGSLKD----LEALETLLISACRKLSS-LPEDIHHL 313 (360)
Q Consensus 240 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~----l~~L~~L~l~~~~~~~~-~~~~~~~~ 313 (360)
.+|+.|++++|. +++..-..+ ..+++|++|+|++|..+++ -...+.. +++|++|+|++|..+++ .-..+.++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 357777777776 333322222 6788899999998877762 2223333 45799999999976653 23345678
Q ss_pred CccceecccCChhHHhh
Q 039007 314 TTLKTLSIKECPALWER 330 (360)
Q Consensus 314 ~~L~~L~l~~c~~~~~~ 330 (360)
++|++|++++|+.+++.
T Consensus 139 ~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TTCCEEEEESCTTCCCH
T ss_pred CCCCEEECCCCCCCCch
Confidence 99999999999877753
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.50 E-value=3.6e-05 Score=68.99 Aligned_cols=125 Identities=13% Similarity=0.138 Sum_probs=70.3
Q ss_pred CCCCccEEEeccCCCCccc-CcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCCch
Q 039007 179 QLSGLRSLILVDCPSLISL-PSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLDLP 257 (360)
Q Consensus 179 ~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 257 (360)
.+.+|+.+.+... ...+ ...+..+..|+.+.+... +... ....+..+.+|+.+.+... +..++
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I----------~~~aF~~~~~l~~i~l~~~--i~~i~ 278 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSI----------GSFLLQNCTALKTLNFYAK--VKTVP 278 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEE----------CTTTTTTCTTCCEEEECCC--CSEEC
T ss_pred cccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEe----------Cccccceeehhcccccccc--ceecc
Confidence 4455555555332 1222 223445666766666432 1111 1123445567777777542 34444
Q ss_pred hhhhcCCCCCCcEEecccCCCcccc-cccccCccccccccccccccccCC-CccccCCCccceecccC
Q 039007 258 QWLLQGSTKTLQFLGIEDCPNFMAL-QGSLKDLEALETLLISACRKLSSL-PEDIHHLTTLKTLSIKE 323 (360)
Q Consensus 258 ~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~ 323 (360)
...+ ..|++|+.+.+.++ .++.+ ...|.+|.+|+.+.|..+ ++.+ ...+.+|.+|+.+.+..
T Consensus 279 ~~aF-~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 279 YLLC-SGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTT-TTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccc-cccccccccccccc-ccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence 4333 67788888888765 34433 456788888888888643 3333 34567788888888743
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.46 E-value=3.6e-05 Score=68.98 Aligned_cols=267 Identities=9% Similarity=0.064 Sum_probs=156.2
Q ss_pred hhhhccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccCc-CCCCCCCcCeEeccccccccccchhhh
Q 039007 29 SSLLSDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLPR-EIGNLKHMRYLDLSRYCQIKKLPNSIC 107 (360)
Q Consensus 29 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~ 107 (360)
.+++....+|+.+.+... + ...-..+|.+|.+|+.+.+..+ ++.+.. .|..+ .|+.+.+.. .+..++....
T Consensus 39 ~~~~~~~~~i~~v~ip~~-v---t~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF 110 (379)
T 4h09_A 39 IPWYKDRDRISEVRVNSG-I---TSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVF 110 (379)
T ss_dssp STTGGGGGGCSEEEECTT-E---EEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTT
T ss_pred ccccccccCCEEEEeCCC-c---cChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEecccee
Confidence 456777888999888743 1 3333456889999999999754 555544 46666 577776653 3455543332
Q ss_pred cCCccceEeeccccCcCcCCccccccccccEEEEeccccccccccCCCCCCCcEeeccCCCchh------------hhHh
Q 039007 108 ELQSLQTLILRGCLKLEELPKDIRYLVSLRMFVVTTKQKSLQESGIACLSSLRSLIISHCWNLE------------YLFE 175 (360)
Q Consensus 108 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~ 175 (360)
...+|+.+.+..+ ...+....-...+++...+..+........+..+.+++.+.+....... ....
T Consensus 111 ~~~~L~~i~lp~~--~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 111 QGTDLDDFEFPGA--TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp TTCCCSEEECCTT--CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred ccCCcccccCCCc--cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceec
Confidence 3347888888653 2223222222235666666554333334566777888877765532211 0111
Q ss_pred hhcCCCCccEEEeccCCCCcccCcccCCCCCCCEEeecCCcCccccccccccCCCCCCCCCCCCCccceEEecCccCCCC
Q 039007 176 HIGQLSGLRSLILVDCPSLISLPSAVKCLSSSETLILIDCKSLNLNLNIEMEGEGSHHDRDNTRTHLQKLFVSGLKQLLD 255 (360)
Q Consensus 176 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 255 (360)
.+..+..+..+.+.... .......+..+..++.+.+...- ... .......+..|+.+.+..+ +..
T Consensus 189 ~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~--~~i----------~~~~f~~~~~L~~i~lp~~--v~~ 253 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGV--TTL----------GDGAFYGMKALDEIAIPKN--VTS 253 (379)
T ss_dssp ECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTC--CEE----------CTTTTTTCSSCCEEEECTT--CCE
T ss_pred cccccccccccccccce-eEEeecccccccccceeeeccce--eEE----------ccccccCCccceEEEcCCC--ccE
Confidence 12234445554443321 11112334556777777765421 111 1223456678888888654 444
Q ss_pred chhhhhcCCCCCCcEEecccCCCccccc-ccccCccccccccccccccccCCCccccCCCccceecccC
Q 039007 256 LPQWLLQGSTKTLQFLGIEDCPNFMALQ-GSLKDLEALETLLISACRKLSSLPEDIHHLTTLKTLSIKE 323 (360)
Q Consensus 256 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 323 (360)
+....+ ..+..|+.+.+... +..++ ..|.+|++|+.+.+.++....--...+.+|.+|+.+.+..
T Consensus 254 I~~~aF-~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 254 IGSFLL-QNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp ECTTTT-TTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred eCcccc-ceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 544433 67889999999753 44443 4689999999999987654333345678899999999953
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=5.4e-08 Score=78.21 Aligned_cols=69 Identities=3% Similarity=0.103 Sum_probs=35.4
Q ss_pred hhhhhccCccccEEEEecc-CCCC-cccchHHHhhcCCCccEEEEeCCCCc-----ccCcCCCCCCCcCeEecccc
Q 039007 28 FSSLLSDLRRVRTILFSIN-DENT-SESFFTSCISKSQFLRVLDLDDSTIE-----VLPREIGNLKHMRYLDLSRY 96 (360)
Q Consensus 28 ~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~ 96 (360)
+...+..++.|++|++++| .++. ....+...+...+.|++|++++|.+. .+...+...+.|++|++++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3445556666666666666 5431 11223444555566666666666554 12233334455555555555
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=1.8e-07 Score=73.52 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=36.3
Q ss_pred CCccceEEecCccCCCCchhhhhcCC---CCCCcEEecccCCCcc-cccccccCccccccccccccccccC
Q 039007 239 RTHLQKLFVSGLKQLLDLPQWLLQGS---TKTLQFLGIEDCPNFM-ALQGSLKDLEALETLLISACRKLSS 305 (360)
Q Consensus 239 ~~~L~~L~L~~~~~~~~~~~~~~~~~---~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~ 305 (360)
+++|++|+|++|..+++.....++.. +++|++|+|++|..++ .-...+..+++|++|++++|+.+++
T Consensus 84 ~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 34444444444444433332222121 3467777777776665 2223356677777777777776654
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=4.8e-07 Score=72.61 Aligned_cols=113 Identities=9% Similarity=0.057 Sum_probs=84.6
Q ss_pred CCcceEEEeeec-ccccc---chhhhhccCccccEEEEeccCCCCc-ccchHHHhhcCCCccEEEEeCCCCc-----ccC
Q 039007 10 PKRVRHLSFVSA-SASRN---DFSSLLSDLRRVRTILFSINDENTS-ESFFTSCISKSQFLRVLDLDDSTIE-----VLP 79 (360)
Q Consensus 10 ~~~l~~L~l~~~-~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~ 79 (360)
.+.++.|++.++ .+... .+...+...++|++|++++|.++.. ...+...+...+.|++|++++|.+. .+.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 467999999998 88763 3456677889999999999997521 2235666778899999999999987 245
Q ss_pred cCCCCCCCcCeEec--cccccccc----cchhhhcCCccceEeeccccC
Q 039007 80 REIGNLKHMRYLDL--SRYCQIKK----LPNSICELQSLQTLILRGCLK 122 (360)
Q Consensus 80 ~~~~~l~~L~~L~l--~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~ 122 (360)
..+...+.|++|++ ++|..... +...+...++|++|++++|..
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 66778889999999 76744332 234455678888888888743
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=3e-07 Score=77.72 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=60.7
Q ss_pred ccCccccE--EEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCccc---CcCCCCCCCcCeEeccccccccccchhhh
Q 039007 33 SDLRRVRT--ILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVL---PREIGNLKHMRYLDLSRYCQIKKLPNSIC 107 (360)
Q Consensus 33 ~~~~~L~~--L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 107 (360)
...+.|.. ++++.|........++....+++.|+.|++++|.++.+ |..+..+++|+.|++++| .+..+. .+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhh
Confidence 33344444 44454432222333344446678888888888887643 344567788888888877 343332 233
Q ss_pred cCC--ccceEeeccccCcCcCCc-------cccccccccEEE
Q 039007 108 ELQ--SLQTLILRGCLKLEELPK-------DIRYLVSLRMFV 140 (360)
Q Consensus 108 ~l~--~L~~L~l~~~~~~~~~p~-------~~~~l~~L~~L~ 140 (360)
.+. +|++|++.+|...+.+|. .+..+++|+.|+
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 333 788888887766655542 245566666554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.81 E-value=1.9e-05 Score=66.73 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=63.3
Q ss_pred ccCccccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCCcccC--cCCCCCCCcCeEeccccccccccc-------
Q 039007 33 SDLRRVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTIEVLP--REIGNLKHMRYLDLSRYCQIKKLP------- 103 (360)
Q Consensus 33 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~------- 103 (360)
..+++|++|+|++|.+.... .++..+..+++|+.|++++|.+..+. ..+..+ +|++|++++|...+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~-~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLD-DMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCG-GGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCc-cchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 57899999999999974322 34566789999999999999988552 234444 89999999997655444
Q ss_pred hhhhcCCccceEeec
Q 039007 104 NSICELQSLQTLILR 118 (360)
Q Consensus 104 ~~~~~l~~L~~L~l~ 118 (360)
..+..+++|+.|+-.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 235679999988753
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.70 E-value=0.0018 Score=51.69 Aligned_cols=120 Identities=14% Similarity=0.075 Sum_probs=78.4
Q ss_pred chhhhhccCccccEEEEecc-CCCC-cccchHHHhhcCCCccEEEEeCCCCc-----ccCcCCCCCCCcCeEeccccccc
Q 039007 27 DFSSLLSDLRRVRTILFSIN-DENT-SESFFTSCISKSQFLRVLDLDDSTIE-----VLPREIGNLKHMRYLDLSRYCQI 99 (360)
Q Consensus 27 ~~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~ 99 (360)
.+...+..-+.|++|+++++ .++. ....+...+..-+.|+.|++++|.+. .+...+..-..|++|++++|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 45556667788999999875 6541 11235666777888999999999886 33444556678999999988544
Q ss_pred cccc----hhhhcCCccceEeeccccC--cC-----cCCccccccccccEEEEecccc
Q 039007 100 KKLP----NSICELQSLQTLILRGCLK--LE-----ELPKDIRYLVSLRMFVVTTKQK 146 (360)
Q Consensus 100 ~~~~----~~~~~l~~L~~L~l~~~~~--~~-----~~p~~~~~l~~L~~L~l~~~~~ 146 (360)
.... ..+..-+.|++|+++++.. ++ .+...+...+.|+.|+++.+..
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3322 3344456799999976422 22 1233455667888888876643
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.37 E-value=0.0013 Score=52.51 Aligned_cols=117 Identities=19% Similarity=0.133 Sum_probs=76.4
Q ss_pred ccchHHHhhcCCCccEEEEeCC-CCc-----ccCcCCCCCCCcCeEeccccccccc----cchhhhcCCccceEeecccc
Q 039007 52 ESFFTSCISKSQFLRVLDLDDS-TIE-----VLPREIGNLKHMRYLDLSRYCQIKK----LPNSICELQSLQTLILRGCL 121 (360)
Q Consensus 52 ~~~~~~~~~~l~~L~~L~l~~~-~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~ 121 (360)
...+...+.+-+.|++|+++++ .+. .+...+..-..|+.|++++|...+. +...+..-+.|+.|+|+.|.
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 4456666777788999999885 665 2445566667899999998854432 23344556889999998875
Q ss_pred CcCc----CCccccccccccEEEEecccc---cc-----ccccCCCCCCCcEeeccCCC
Q 039007 122 KLEE----LPKDIRYLVSLRMFVVTTKQK---SL-----QESGIACLSSLRSLIISHCW 168 (360)
Q Consensus 122 ~~~~----~p~~~~~l~~L~~L~l~~~~~---~~-----~~~~~~~l~~L~~L~l~~~~ 168 (360)
+... +.+.+.....|+.|+++++.. .. +...+..-+.|+.|++..+.
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4432 223455566789999875422 21 12344556778888887653
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.23 E-value=0.038 Score=40.86 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=20.6
Q ss_pred cccEEEEeccCCCCcccchHHHhhcCCCccEEEEeCCCC
Q 039007 37 RVRTILFSINDENTSESFFTSCISKSQFLRVLDLDDSTI 75 (360)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 75 (360)
+|+.|+|++|.+. ......|..+++|+.|++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~---~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT---ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS---SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC---ccChhhhhhccccCEEEecCCCe
Confidence 4666666666652 22334456666666666666654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.72 E-value=0.13 Score=37.86 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=25.7
Q ss_pred EEEEeCCCCc--ccCcCCCCCCCcCeEeccccccccccc-hhhhcCCccceEeeccc
Q 039007 67 VLDLDDSTIE--VLPREIGNLKHMRYLDLSRYCQIKKLP-NSICELQSLQTLILRGC 120 (360)
Q Consensus 67 ~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~ 120 (360)
.++-++++++ .+|..+. ++|++|++++| .++.++ ..|..+++|+.|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 4444555554 5554321 34666666655 344443 23445566666666555
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.90 E-value=77 Score=21.51 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=3.3
Q ss_pred cCCCccEEE
Q 039007 61 KSQFLRVLD 69 (360)
Q Consensus 61 ~l~~L~~L~ 69 (360)
+|..|+.+.
T Consensus 18 ~c~~L~~i~ 26 (100)
T 2lz0_A 18 GNTVIREIT 26 (100)
T ss_dssp TCTTCCCEE
T ss_pred CCCCCcEEE
Confidence 333333333
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.01 E-value=38 Score=23.11 Aligned_cols=11 Identities=0% Similarity=0.120 Sum_probs=4.4
Q ss_pred hcCCccceEee
Q 039007 107 CELQSLQTLIL 117 (360)
Q Consensus 107 ~~l~~L~~L~l 117 (360)
.+|.+|+.+.+
T Consensus 17 ~~c~~L~~i~i 27 (100)
T 2lz0_A 17 AGNTVIREITV 27 (100)
T ss_dssp TTCTTCCCEEE
T ss_pred cCCCCCcEEEc
Confidence 33444444433
Done!