Query 039009
Match_columns 256
No_of_seqs 189 out of 505
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:25:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 100.0 2.2E-57 4.7E-62 401.9 21.4 214 35-249 8-225 (230)
2 PF02453 Reticulon: Reticulon; 100.0 2.5E-37 5.5E-42 259.0 -6.5 163 71-233 1-169 (169)
3 PF04842 DUF639: Plant protein 96.9 0.0099 2.2E-07 60.3 11.5 134 71-210 506-649 (683)
4 KOG1792 Reticulon [Intracellul 93.5 0.31 6.8E-06 43.8 7.4 79 163-241 42-143 (230)
5 PF06398 Pex24p: Integral pero 91.0 3.1 6.8E-05 39.1 11.3 40 47-92 14-53 (359)
6 PF08372 PRT_C: Plant phosphor 90.8 0.086 1.9E-06 44.7 0.5 49 45-93 54-107 (156)
7 PF08372 PRT_C: Plant phosphor 89.6 2.3 5E-05 36.0 8.2 66 151-216 72-137 (156)
8 PF10112 Halogen_Hydrol: 5-bro 77.4 30 0.00065 29.8 10.1 71 178-249 16-97 (199)
9 KOG1726 HVA22/DP1 gene product 69.9 55 0.0012 29.4 9.9 34 214-247 94-127 (225)
10 COG0053 MMT1 Predicted Co/Zn/C 63.4 1.3E+02 0.0028 28.0 11.9 53 172-225 159-213 (304)
11 PRK05702 flhB flagellar biosyn 63.1 1.4E+02 0.0031 28.5 13.5 18 161-178 131-148 (359)
12 COG1458 Predicted DNA-binding 61.7 65 0.0014 28.6 8.5 45 122-166 73-117 (221)
13 PF01484 Col_cuticle_N: Nemato 56.7 48 0.001 22.0 5.7 13 203-215 15-27 (53)
14 PF02453 Reticulon: Reticulon; 51.8 6 0.00013 32.5 0.6 26 71-96 100-125 (169)
15 KOG3488 Dolichol phosphate-man 51.0 33 0.00072 25.5 4.2 35 162-196 37-71 (81)
16 PF10444 Nbl1_Borealin_N: Nbl1 44.0 80 0.0017 22.0 5.3 39 213-251 7-48 (59)
17 PF07234 DUF1426: Protein of u 41.7 1.7E+02 0.0037 23.1 7.2 37 170-212 5-41 (117)
18 PF04298 Zn_peptidase_2: Putat 41.3 2.6E+02 0.0057 25.1 9.3 108 71-201 106-218 (222)
19 PF10256 Erf4: Golgin subfamil 40.7 1.7E+02 0.0038 22.8 7.9 18 210-227 76-93 (118)
20 KOG1889 Putative phosphoinosit 39.8 83 0.0018 31.9 6.4 80 58-138 486-576 (579)
21 COG3887 Predicted signaling pr 39.5 2.7E+02 0.0058 28.8 10.0 56 190-249 32-87 (655)
22 PF00873 ACR_tran: AcrB/AcrD/A 39.4 5.2E+02 0.011 27.9 13.8 64 170-243 453-524 (1021)
23 COG5038 Ca2+-dependent lipid-b 35.1 1.6E+02 0.0034 32.7 8.0 53 172-226 157-209 (1227)
24 COG4129 Predicted membrane pro 33.6 4.2E+02 0.0091 25.1 13.9 36 83-119 62-97 (332)
25 PF06363 Picorna_P3A: Picornav 33.2 2.2E+02 0.0047 22.3 6.4 51 140-202 41-91 (100)
26 PF13677 MotB_plug: Membrane M 31.3 1.1E+02 0.0023 21.4 4.2 30 183-216 16-45 (58)
27 PHA02677 hypothetical protein; 28.0 1.4E+02 0.0031 23.7 4.8 33 195-227 5-37 (108)
28 PF01594 UPF0118: Domain of un 28.0 4.5E+02 0.0097 23.6 12.0 21 182-202 130-150 (327)
29 COG1377 FlhB Flagellar biosynt 27.9 5.6E+02 0.012 24.7 17.7 16 234-249 248-263 (363)
30 PRK15489 nfrB bacteriophage N4 27.1 5.4E+02 0.012 27.0 10.2 13 188-200 444-456 (703)
31 PRK06433 NADH dehydrogenase su 27.1 1.5E+02 0.0032 22.6 4.7 36 73-108 21-57 (88)
32 PRK03557 zinc transporter ZitB 25.5 5.3E+02 0.012 23.7 12.7 24 106-129 91-114 (312)
33 PF13198 DUF4014: Protein of u 25.1 2.6E+02 0.0055 20.8 5.3 25 202-226 37-61 (72)
34 PF11696 DUF3292: Protein of u 24.7 2.2E+02 0.0048 29.5 6.7 44 146-189 97-140 (642)
35 KOG2628 Farnesyl cysteine-carb 24.7 2.7E+02 0.0058 24.7 6.4 62 179-248 137-199 (201)
36 KOG3873 Sphingomyelinase famil 23.4 4.3E+02 0.0094 25.8 8.0 54 175-228 344-400 (422)
37 PRK11677 hypothetical protein; 22.8 4.2E+02 0.0092 21.8 7.0 10 215-224 47-56 (134)
38 COG2928 Uncharacterized conser 22.6 5E+02 0.011 23.3 7.8 18 231-248 79-96 (222)
39 PF06881 Elongin_A: RNA polyme 22.5 1.5E+02 0.0032 23.0 4.1 33 208-240 64-96 (109)
40 COG3759 Predicted membrane pro 22.4 4.3E+02 0.0093 21.5 7.5 42 107-148 3-45 (121)
41 PF11696 DUF3292: Protein of u 21.2 80 0.0017 32.6 2.8 51 44-95 89-139 (642)
42 KOG3747 Concentrative Na+-nucl 20.1 9.5E+02 0.02 24.6 10.1 42 76-117 149-192 (602)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-57 Score=401.94 Aligned_cols=214 Identities=61% Similarity=0.987 Sum_probs=207.3
Q ss_pred CCCCcccCCCccccccccccccCcccchhhhcCCCcccceecccccchhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 039009 35 SDTDDDKKSSTSSLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIV 114 (256)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~r~f~r~~~~h~~Lgggk~aDlLlWrn~k~Sg~vf~~~t~~w~Lf~~~~yslltlv~~illl 114 (256)
+|++++++++++ .+++.+|+|+||+|+|+++|||+++|+++|||++.||++|++++++|++|+..+|+.+|++|+++++
T Consensus 8 ~~~~~~~~~~~s-~~~~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll 86 (230)
T KOG1792|consen 8 SNSESEKLKFTS-AIEKSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLL 86 (230)
T ss_pred cccccccccccc-ccchhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 388888877666 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcc-CCC--CCC-ceecChHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHh
Q 039009 115 ALAVLFLWSNASTFINK-SPP--RIP-EVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVG 190 (256)
Q Consensus 115 ~l~~~fl~s~~~~~i~k-~~~--~~p-~~~isee~v~~~a~~v~~~iN~~l~~lr~I~~g~d~~~~lkv~~~L~vls~vG 190 (256)
.+.+.|.|++...+++| ++| ..| ++++|||.+.+.+++++.++|+.+..+|++++|||+++|++++++||+++++|
T Consensus 87 ~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vG 166 (230)
T KOG1792|consen 87 ALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVG 166 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888 666 678 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 039009 191 SWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS 249 (256)
Q Consensus 191 s~~s~lTLl~i~~v~~FTvP~lYekyqd~ID~~~~~~~~~ik~~y~~~~~kvl~kiP~~ 249 (256)
+|||++||+|+|++++||+|++||+|||+||++++++..+++++|+++|+|+++|||++
T Consensus 167 s~fn~lTll~ig~v~~~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~ 225 (230)
T KOG1792|consen 167 SLFNFLTLLYIGLVLLFTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVLSKIPAG 225 (230)
T ss_pred HhhhHHHHHHHHHHHHhcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999998
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=100.00 E-value=2.5e-37 Score=258.97 Aligned_cols=163 Identities=39% Similarity=0.653 Sum_probs=47.7
Q ss_pred ccceecccccchhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhhccCC------CCCCceecChH
Q 039009 71 PADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSP------PRIPEVYIPEE 144 (256)
Q Consensus 71 ~aDlLlWrn~k~Sg~vf~~~t~~w~Lf~~~~yslltlv~~illl~l~~~fl~s~~~~~i~k~~------~~~p~~~isee 144 (256)
|+|+|+||||+.||.+|++++++|+++++.++|++|++|+++++.+++.+++.....++++.+ ++.++.++|||
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE 80 (169)
T ss_dssp ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence 589999999999999999999999999999999999999999999999999888777777654 33347899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 039009 145 PVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFS 224 (256)
Q Consensus 145 ~v~~~a~~v~~~iN~~l~~lr~I~~g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~FTvP~lYekyqd~ID~~~ 224 (256)
.++++++.+.+.+|..+..+|+++.++|++.++++++++|+++++|+++|++||+|++++++||+|.+||+||++||+++
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~ 160 (169)
T PF02453_consen 81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV 160 (169)
T ss_dssp HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 039009 225 EKAWAEIKK 233 (256)
Q Consensus 225 ~~~~~~ik~ 233 (256)
++++++++|
T Consensus 161 ~~~~~~~~k 169 (169)
T PF02453_consen 161 AKVKEKVKK 169 (169)
T ss_dssp ---------
T ss_pred HHHHHHhcC
Confidence 998887764
No 3
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=96.90 E-value=0.0099 Score=60.33 Aligned_cols=134 Identities=17% Similarity=0.174 Sum_probs=88.6
Q ss_pred ccceecccccchhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhhccC--------CCCCC--cee
Q 039009 71 PADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKS--------PPRIP--EVY 140 (256)
Q Consensus 71 ~aDlLlWrn~k~Sg~vf~~~t~~w~Lf~~~~yslltlv~~illl~l~~~fl~s~~~~~i~k~--------~~~~p--~~~ 140 (256)
+.++..|+||.+|..+++..+.+ +.-.|.+|-+ -.+++.+++..+|....+-.++. ||+-. +-.
T Consensus 506 ~~~l~~We~P~kt~~Fl~~~~~i-I~r~wl~Y~~-----p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvEqi 579 (683)
T PF04842_consen 506 LQKLASWEEPLKTLVFLALFLYI-IYRGWLGYIF-----PAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVEQI 579 (683)
T ss_pred HHHHhhccCcchhHHHHHHHHHH-HHHHHHHHHH-----HHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHHHH
Confidence 56889999999999988876653 1222333322 22233333334554332112221 11111 111
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 039009 141 IPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVP 210 (256)
Q Consensus 141 isee~v~~~a~~v~~~iN~~l~~lr~I~~g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~FTvP 210 (256)
+.-.....-++......|-++-++|.|++....+.+-+|++.|..++.+-..+.+--++...++-.||-.
T Consensus 580 lalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre 649 (683)
T PF04842_consen 580 LALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRE 649 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222333345677788899999999999999999999999999999999999999999988888888854
No 4
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=0.31 Score=43.78 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=63.3
Q ss_pred HHhhhhcccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhc-----------------------hhH
Q 039009 163 LLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKY-----------------------EDR 219 (256)
Q Consensus 163 ~lr~I~~g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~FTvP~lYeky-----------------------qd~ 219 (256)
...|++++||.+.++.+..+..++..+-.+++..++..++.+++++++.+|..+ |+.
T Consensus 42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~ 121 (230)
T KOG1792|consen 42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF 121 (230)
T ss_pred chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence 577899999999999988888888888888888888888888888777766555 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039009 220 VDSFSEKAWAEIKKQYAVFDAK 241 (256)
Q Consensus 220 ID~~~~~~~~~ik~~y~~~~~k 241 (256)
++++...+..+++...+++.+=
T Consensus 122 ~~~~a~~~~~~in~~l~~l~~i 143 (230)
T KOG1792|consen 122 VLALASSLRVEINQALSELRDI 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888777766653
No 5
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=90.97 E-value=3.1 Score=39.07 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=25.6
Q ss_pred ccccccccccCcccchhhhcCCCcccceecccccchhHHHHHHHHH
Q 039009 47 SLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATA 92 (256)
Q Consensus 47 ~~~~~~~r~f~r~~~~h~~Lgggk~aDlLlWrn~k~Sg~vf~~~t~ 92 (256)
.+.++..++|-=+..++.+ .++++|+||..+-.++...+.
T Consensus 14 ~l~~~l~~~f~~~~~~d~v------l~il~W~~p~~t~~~L~l~t~ 53 (359)
T PF06398_consen 14 RLSSRLGPIFPFQLILDRV------LRILTWTNPDYTLSFLLLYTF 53 (359)
T ss_pred HHHHHHHHhhHHHHHHHHH------HHeEEeCCCCcchHHHHHHHH
Confidence 3444445555444434444 789999999988877666553
No 6
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=90.77 E-value=0.086 Score=44.67 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=34.1
Q ss_pred ccccccccccccCcccchhhhcC-----CCcccceecccccchhHHHHHHHHHH
Q 039009 45 TSSLKTKVFRLFGREKPVHKVLG-----GGKPADVFLWRNKKISAGVLGGATAI 93 (256)
Q Consensus 45 ~~~~~~~~~r~f~r~~~~h~~Lg-----ggk~aDlLlWrn~k~Sg~vf~~~t~~ 93 (256)
+.+++.+..|+-.--.-+-.++| |.++..++.||||..|++...+.++.
T Consensus 54 ~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~ 107 (156)
T PF08372_consen 54 PDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVA 107 (156)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH
Confidence 45666666666443333455555 56689999999999999888776553
No 7
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=89.63 E-value=2.3 Score=36.04 Aligned_cols=66 Identities=15% Similarity=0.054 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 039009 151 SALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKY 216 (256)
Q Consensus 151 ~~v~~~iN~~l~~lr~I~~g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~FTvP~lYeky 216 (256)
+.+...+....+.++.++.++|...+..+++++++++++--+..+..++++..+-.++=|.+-.++
T Consensus 72 Q~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~ 137 (156)
T PF08372_consen 72 QNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPL 137 (156)
T ss_pred HHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCC
Confidence 344445556677899999999999999999999999988888788888777777777777776543
No 8
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=77.41 E-value=30 Score=29.77 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039009 178 SVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRV-----------DSFSEKAWAEIKKQYAVFDAKVLSKI 246 (256)
Q Consensus 178 kv~~~L~vls~vGs~~s~lTLl~i~~v~~FTvP~lYekyqd~I-----------D~~~~~~~~~ik~~y~~~~~kvl~ki 246 (256)
.+++..|+++++|.-.+++--+.++.++.+.+.....+++..- ..++.....+.++++++++ +...+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~i~-~~~~~i 94 (199)
T PF10112_consen 16 LIAAITFLVSFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRRIE-KAIKRI 94 (199)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHHHH-HHHHHc
Confidence 3455667777776666666655556655555554444333222 2356666677777777776 455677
Q ss_pred Ccc
Q 039009 247 PRS 249 (256)
Q Consensus 247 P~~ 249 (256)
++-
T Consensus 95 ~~~ 97 (199)
T PF10112_consen 95 RDL 97 (199)
T ss_pred CCH
Confidence 764
No 9
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=69.87 E-value=55 Score=29.43 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=25.5
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 039009 214 EKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP 247 (256)
Q Consensus 214 ekyqd~ID~~~~~~~~~ik~~y~~~~~kvl~kiP 247 (256)
.+||++||+++..++...-++...+-.|.++--+
T Consensus 94 s~~E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~ 127 (225)
T KOG1726|consen 94 SKHEEEIDRMLVEAKERVYDAAVSILKRALNYAQ 127 (225)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999998887776666666655433
No 10
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=63.41 E-value=1.3e+02 Score=27.96 Aligned_cols=53 Identities=26% Similarity=0.441 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHH-HHHHHhchhHHHHHHH
Q 039009 172 DLKKFLSVIAGLWVVSIVG-SWCNFLTLFYIVFVLLHTV-PVIYEKYEDRVDSFSE 225 (256)
Q Consensus 172 d~~~~lkv~~~L~vls~vG-s~~s~lTLl~i~~v~~FTv-P~lYekyqd~ID~~~~ 225 (256)
|...++.+++++- ..+.| -|.....=+.+++..+.+. =.++|.....+|+-+.
T Consensus 159 D~~ts~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~ 213 (304)
T COG0053 159 DVLTSLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALD 213 (304)
T ss_pred HHHHHHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 7777777777777 67777 4555555555555444443 3666777777774443
No 11
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=63.11 E-value=1.4e+02 Score=28.49 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=10.2
Q ss_pred HHHHhhhhcccchHHHHH
Q 039009 161 FTLLREIASGRDLKKFLS 178 (256)
Q Consensus 161 l~~lr~I~~g~d~~~~lk 178 (256)
++-++++++.+.+..++|
T Consensus 131 i~G~KriFS~~~l~el~K 148 (359)
T PRK05702 131 LKGLKRMFSAQGLVELLK 148 (359)
T ss_pred HHHHHHhcCHHHHHHHHH
Confidence 455666666666555543
No 12
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=61.70 E-value=65 Score=28.61 Aligned_cols=45 Identities=27% Similarity=0.374 Sum_probs=34.7
Q ss_pred HHHHHhhhccCCCCCCceecChHHHHHHHHHHHHHHHHHHHHHhh
Q 039009 122 WSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLRE 166 (256)
Q Consensus 122 ~s~~~~~i~k~~~~~p~~~isee~v~~~a~~v~~~iN~~l~~lr~ 166 (256)
+..+-.++-+.+|+..++.||-+.+.+....++..+|+.+....+
T Consensus 73 ~~ki~twivkKtPnryevkiPa~ifyeyV~diR~RinkGlRvAE~ 117 (221)
T COG1458 73 IAKIETWIVKKTPNRYEVKIPAAIFYEYVEDIRERINKGLRVAEE 117 (221)
T ss_pred HHhhheeeEecCCCceeecCcHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 333444555566666789999999999999999999999875544
No 13
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=56.69 E-value=48 Score=21.96 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHh
Q 039009 203 FVLLHTVPVIYEK 215 (256)
Q Consensus 203 ~v~~FTvP~lYek 215 (256)
+.+++++|.+|..
T Consensus 15 ~~~l~~~p~i~~~ 27 (53)
T PF01484_consen 15 LSCLITVPSIYND 27 (53)
T ss_pred HHHHHHHHHHHHH
Confidence 5678899999965
No 14
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=51.77 E-value=6 Score=32.49 Aligned_cols=26 Identities=15% Similarity=-0.021 Sum_probs=11.8
Q ss_pred ccceecccccchhHHHHHHHHHHHHH
Q 039009 71 PADVFLWRNKKISAGVLGGATAIWVL 96 (256)
Q Consensus 71 ~aDlLlWrn~k~Sg~vf~~~t~~w~L 96 (256)
..+++.|+|++.|..++++..++..+
T Consensus 100 ~~~l~~~~~~~~~l~~~~~l~~l~~l 125 (169)
T PF02453_consen 100 LRRLVFGEDPKKSLKVFVVLYILSFL 125 (169)
T ss_dssp HHCCCHCT-TTGGG------------
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 57899999999999987766554333
No 15
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=50.97 E-value=33 Score=25.47 Aligned_cols=35 Identities=17% Similarity=0.481 Sum_probs=29.3
Q ss_pred HHHhhhhcccchHHHHHHHHHHHHHHHHhhhhhhH
Q 039009 162 TLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFL 196 (256)
Q Consensus 162 ~~lr~I~~g~d~~~~lkv~~~L~vls~vGs~~s~l 196 (256)
...+..++-|++.-..-++++++.+..+|-++|..
T Consensus 37 hiihKyFLpr~yAi~iPvaagl~ll~lig~Fis~v 71 (81)
T KOG3488|consen 37 HIIHKYFLPREYAITIPVAAGLFLLCLIGTFISLV 71 (81)
T ss_pred HHHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999776554
No 16
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=43.99 E-value=80 Score=22.02 Aligned_cols=39 Identities=13% Similarity=0.354 Sum_probs=27.0
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCcchh
Q 039009 213 YEKYEDRVDSFSEKAWAEIKKQYAVFDAKV---LSKIPRSLK 251 (256)
Q Consensus 213 Yekyqd~ID~~~~~~~~~ik~~y~~~~~kv---l~kiP~~~k 251 (256)
-+.++-+|+.-++......+.+.+.++..+ +.+||++++
T Consensus 7 l~~fd~Ev~~r~~~lr~~~~~~~~~~~~~~~~~l~riP~~vR 48 (59)
T PF10444_consen 7 LQNFDLEVEERIRRLRAQYENLLQSLRNRLEMELLRIPKAVR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 345667777777777777777777777655 789998744
No 17
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=41.66 E-value=1.7e+02 Score=23.13 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=26.4
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 039009 170 GRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVI 212 (256)
Q Consensus 170 g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~FTvP~l 212 (256)
++..+.|+.++. ++|..|--.|++||...++|-+|+-
T Consensus 5 tERVKlfFEwFL------F~~AIFiAItIlYILLalL~EvPkY 41 (117)
T PF07234_consen 5 TERVKLFFEWFL------FFGAIFIAITILYILLALLFEVPKY 41 (117)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344555554332 3577777889999999999999963
No 18
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=41.29 E-value=2.6e+02 Score=25.06 Aligned_cols=108 Identities=22% Similarity=0.217 Sum_probs=57.7
Q ss_pred ccceecccccchhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCceecChHHHHHHH
Q 039009 71 PADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLA 150 (256)
Q Consensus 71 ~aDlLlWrn~k~Sg~vf~~~t~~w~Lf~~~~yslltlv~~illl~l~~~fl~s~~~~~i~k~~~~~p~~~isee~v~~~a 150 (256)
-.-.+.||+.-....-++.-...|+++.-.=......+..+.++.+++..+ .++ +++|.|.
T Consensus 106 ~Y~pl~lRs~lvP~~~~~s~~~~~l~~~G~~l~~~~~l~~~Gi~lf~~~vl----f~l----------vTLPVEf----- 166 (222)
T PF04298_consen 106 GYAPLRLRSALVPVANIGSNLSWILLILGLFLSSGAGLLWIGIILFSLAVL----FQL----------VTLPVEF----- 166 (222)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhe----------eechhhh-----
Confidence 345678999888888888776554443211011112223333322222222 121 1333321
Q ss_pred HHHHHHHHHHHHHHhh--hhcccch---HHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 039009 151 SALRFEINRAFTLLRE--IASGRDL---KKFLSVIAGLWVVSIVGSWCNFLTLFYI 201 (256)
Q Consensus 151 ~~v~~~iN~~l~~lr~--I~~g~d~---~~~lkv~~~L~vls~vGs~~s~lTLl~i 201 (256)
+.-|+++..+++ +...+|. ++-|.+++..|+.+-+++..+++-++.+
T Consensus 167 ----dAS~RAl~~L~~~~~l~~~E~~~arkVL~AAAlTYVAaal~sll~llr~l~i 218 (222)
T PF04298_consen 167 ----DASRRALPILEEGGILSPEELPGARKVLTAAALTYVAAALSSLLQLLRLLLI 218 (222)
T ss_pred ----hhhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111566666664 3444443 4557888899999999988777766554
No 19
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=40.72 E-value=1.7e+02 Score=22.76 Aligned_cols=18 Identities=11% Similarity=0.290 Sum_probs=11.3
Q ss_pred HHHHHhchhHHHHHHHHH
Q 039009 210 PVIYEKYEDRVDSFSEKA 227 (256)
Q Consensus 210 P~lYekyqd~ID~~~~~~ 227 (256)
-..|++...+++.+++..
T Consensus 76 ~~~~~~~~~~le~~l~~~ 93 (118)
T PF10256_consen 76 KTHYKRKLRELEKYLEQL 93 (118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666777776653
No 20
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=39.80 E-value=83 Score=31.92 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=50.1
Q ss_pred cccchhhhcCCCcccceec----------ccccchhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHH
Q 039009 58 REKPVHKVLGGGKPADVFL----------WRNKKISAGVLGGATAIWVLFQLL-EYHLLTLVCHCLIVALAVLFLWSNAS 126 (256)
Q Consensus 58 r~~~~h~~Lgggk~aDlLl----------Wrn~k~Sg~vf~~~t~~w~Lf~~~-~yslltlv~~illl~l~~~fl~s~~~ 126 (256)
||.+..-+||+=.+.+... |+--...++.+.+.+. ..+-.++ .-+++-.+.+..++++...+++.+..
T Consensus 486 rQDsiDL~lG~f~v~~s~s~~~pl~~~~~~~~~~~p~i~lva~~m-~~is~l~~~~~l~~~l~w~~~~~~s~~~i~~~g~ 564 (579)
T KOG1889|consen 486 RQDSIDLFLGNFRVDVSRSDLSPLPLRRGLYILAAPIIFLVALSM-FIISLLFSTPNLLYRLFWFAIMVVSIAVILINGD 564 (579)
T ss_pred ccchHHHhcCCcccccccccCCCcccccCceeehhhHHHHHHHHH-HHHHHHhCCchHHHHHHHHHHHHHHHHhheechH
Confidence 8889999999888887774 5444443333333322 1222222 24555556666666666677777888
Q ss_pred hhhccCCCCCCc
Q 039009 127 TFINKSPPRIPE 138 (256)
Q Consensus 127 ~~i~k~~~~~p~ 138 (256)
+++||+-...|.
T Consensus 565 ~fvnwPrl~~p~ 576 (579)
T KOG1889|consen 565 QFVNWPRLVLPQ 576 (579)
T ss_pred HhcCCccccCcc
Confidence 899998776663
No 21
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=39.55 E-value=2.7e+02 Score=28.83 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=30.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 039009 190 GSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS 249 (256)
Q Consensus 190 Gs~~s~lTLl~i~~v~~FTvP~lYekyqd~ID~~~~~~~~~ik~~y~~~~~kvl~kiP~~ 249 (256)
|+|.+..-++.+++...|.+-..+.-||+..-.+++. ++.+....-+..+-.+|-|
T Consensus 32 ~~~l~~i~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~----ls~~~~~~~~~al~nmPiG 87 (655)
T COG3887 32 NWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYISY----LSYQAEKSLEEALTNMPIG 87 (655)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCce
Confidence 4443433344444444444444444444444446665 4555566667788899987
No 22
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=39.37 E-value=5.2e+02 Score=27.87 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=35.0
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhc----hh----HHHHHHHHHHHHHHHHHHHHHHH
Q 039009 170 GRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKY----ED----RVDSFSEKAWAEIKKQYAVFDAK 241 (256)
Q Consensus 170 g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~FTvP~lYeky----qd----~ID~~~~~~~~~ik~~y~~~~~k 241 (256)
......+++-+....+++.+.|+ ++..+.+|.++... +. ......++....+++.|.++-.+
T Consensus 453 ~G~~g~~~~~l~~~v~~al~~Sl----------lval~~~P~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y~~lL~~ 522 (1021)
T PF00873_consen 453 PGIAGQFFRPLALTVIIALIASL----------LVALTLVPALAALFLKPKKKSSKKRFFSKFDRFFDRLQRGYRRLLRW 522 (1021)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHH----------HHHHTTHHHHHHHCS----TT-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHH----------HHHHHhhhhhhhhhhccccccccccccccccccccccccchhhhhhh
Confidence 44555555555555555555555 56667778766432 11 12334455555577777766555
Q ss_pred HH
Q 039009 242 VL 243 (256)
Q Consensus 242 vl 243 (256)
++
T Consensus 523 ~L 524 (1021)
T PF00873_consen 523 AL 524 (1021)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 23
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=35.06 E-value=1.6e+02 Score=32.66 Aligned_cols=53 Identities=15% Similarity=0.399 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 039009 172 DLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEK 226 (256)
Q Consensus 172 d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~FTvP~lYekyqd~ID~~~~~ 226 (256)
+....+...++.|+++++| |+++.|+++..++++..=.-+++|..-|-..+.+
T Consensus 157 s~~i~l~~~v~Swifg~~~--fs~~slffii~~~~~vY~~~~~rv~rnird~v~~ 209 (1227)
T COG5038 157 SVAIVLIGSVASWIFGYLG--FSFASLFFIILVTMYVYRTCIKRVRRNIRDLVQQ 209 (1227)
T ss_pred hhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777888888875 8999999999999988888888777666554443
No 24
>COG4129 Predicted membrane protein [Function unknown]
Probab=33.59 E-value=4.2e+02 Score=25.10 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 039009 83 SAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVL 119 (256)
Q Consensus 83 Sg~vf~~~t~~w~Lf~~~~yslltlv~~illl~l~~~ 119 (256)
-|.++|++.+. ++|.+.|++.+++.++++++..+..
T Consensus 62 ~g~~iG~~~a~-l~~~l~g~~~~~~~v~~~i~i~~~~ 97 (332)
T COG4129 62 LGNALGAILAV-LFFLLFGQNPIAFGVVLLIIIPLLV 97 (332)
T ss_pred HHHHHHHHHHH-HHHHHcCccHHHHHHHHHHHHHHHH
Confidence 35566666554 5666778888888877777665444
No 25
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=33.21 E-value=2.2e+02 Score=22.25 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=33.8
Q ss_pred ecChHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 039009 140 YIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIV 202 (256)
Q Consensus 140 ~isee~v~~~a~~v~~~iN~~l~~lr~I~~g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~ 202 (256)
..+....+++.+++..++++.....-| | + +.+-++|.+.|.+|.+||+|.-
T Consensus 41 ~~~~~a~~kv~~W~~~k~k~~~~FV~R-----N-k------~W~T~~S~~tS~isIL~LV~~~ 91 (100)
T PF06363_consen 41 TKIKTACDKVKSWVKNKMKSMLSFVER-----N-K------AWFTVVSAVTSFISILLLVTKI 91 (100)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-----c-c------hHhhHHHHHHHHHHHHHHHHHH
Confidence 344567777888888888777654432 1 1 2344678888888888887754
No 26
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=31.29 E-value=1.1e+02 Score=21.40 Aligned_cols=30 Identities=27% Similarity=0.604 Sum_probs=21.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 039009 183 LWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKY 216 (256)
Q Consensus 183 L~vls~vGs~~s~lTLl~i~~v~~FTvP~lYeky 216 (256)
.|+++|- .+.||+...|++++++-.+=+..
T Consensus 16 ~Wlvtya----DlmTLLl~fFVlL~s~s~~d~~k 45 (58)
T PF13677_consen 16 RWLVTYA----DLMTLLLAFFVLLFSMSSVDKEK 45 (58)
T ss_pred cHHHHHH----HHHHHHHHHHHHHHHHHhCCHHH
Confidence 3555544 88999999999998876554433
No 27
>PHA02677 hypothetical protein; Provisional
Probab=28.03 E-value=1.4e+02 Score=23.71 Aligned_cols=33 Identities=33% Similarity=0.581 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Q 039009 195 FLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKA 227 (256)
Q Consensus 195 ~lTLl~i~~v~~FTvP~lYekyqd~ID~~~~~~ 227 (256)
|+-|+|...+.=..+|.+.||-+.+=|++..-+
T Consensus 5 FLilCYFILIFNIiVP~I~EKlR~E~~Af~ky~ 37 (108)
T PHA02677 5 FLIICYFVLIFNILVPGIFEKLRQEHAAFDRLA 37 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888899999999999999987654
No 28
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=27.99 E-value=4.5e+02 Score=23.64 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=9.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHH
Q 039009 182 GLWVVSIVGSWCNFLTLFYIV 202 (256)
Q Consensus 182 ~L~vls~vGs~~s~lTLl~i~ 202 (256)
.-++.+.+++..++..=+.+.
T Consensus 130 ~~~~~~~~~~~~~~l~~~~i~ 150 (327)
T PF01594_consen 130 LSSLSSFISSIFSFLFNFFIF 150 (327)
T ss_pred HHHHHHHHHhhhhHHHHHHHH
Confidence 334445555444444333333
No 29
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.86 E-value=5.6e+02 Score=24.73 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhCCcc
Q 039009 234 QYAVFDAKVLSKIPRS 249 (256)
Q Consensus 234 ~y~~~~~kvl~kiP~~ 249 (256)
|.+..++++.+.+|++
T Consensus 248 ~re~a~~rm~~~Vp~A 263 (363)
T COG1377 248 QREIARRRMMSDVPKA 263 (363)
T ss_pred HHHHHHHHHHhhCCCC
Confidence 3345567778888886
No 30
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=27.13 E-value=5.4e+02 Score=27.03 Aligned_cols=13 Identities=31% Similarity=0.766 Sum_probs=9.3
Q ss_pred HHhhhhhhHHHHH
Q 039009 188 IVGSWCNFLTLFY 200 (256)
Q Consensus 188 ~vGs~~s~lTLl~ 200 (256)
.+||++||+..+-
T Consensus 444 ~~~n~in~~a~~r 456 (703)
T PRK15489 444 VVGNFINFMAVCR 456 (703)
T ss_pred HHHHHHHHHHHHH
Confidence 4688888877654
No 31
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=27.08 E-value=1.5e+02 Score=22.60 Aligned_cols=36 Identities=36% Similarity=0.273 Sum_probs=22.8
Q ss_pred ceecccccchhHHHHHHHHHH-HHHHHHhcCchHHHH
Q 039009 73 DVFLWRNKKISAGVLGGATAI-WVLFQLLEYHLLTLV 108 (256)
Q Consensus 73 DlLlWrn~k~Sg~vf~~~t~~-w~Lf~~~~yslltlv 108 (256)
-++.+||+-.++..++..... =.+|.+.+..++.+.
T Consensus 21 ~vv~~kn~v~svl~l~~~~~~~a~l~~lL~a~fvA~~ 57 (88)
T PRK06433 21 GVVLSRDVWHSALYLGVALFSVAVLYVMLNAEFLAAV 57 (88)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 356789999998887755321 135556666666543
No 32
>PRK03557 zinc transporter ZitB; Provisional
Probab=25.54 E-value=5.3e+02 Score=23.70 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 039009 106 TLVCHCLIVALAVLFLWSNASTFI 129 (256)
Q Consensus 106 tlv~~illl~l~~~fl~s~~~~~i 129 (256)
+++.-++++.+++..+|..+.+++
T Consensus 91 al~~~~~l~~~~~~i~~eai~~l~ 114 (312)
T PRK03557 91 AFVNAIALVVITILIVWEAIERFR 114 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444555555554
No 33
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=25.07 E-value=2.6e+02 Score=20.77 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHH
Q 039009 202 VFVLLHTVPVIYEKYEDRVDSFSEK 226 (256)
Q Consensus 202 ~~v~~FTvP~lYekyqd~ID~~~~~ 226 (256)
...+.+++-.+.|+|.+.+-....+
T Consensus 37 ~~~i~~~~E~l~e~Y~~~~w~~F~~ 61 (72)
T PF13198_consen 37 VWIIGKIIEPLFELYKDWFWNPFNA 61 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444455556666666555544443
No 34
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=24.73 E-value=2.2e+02 Score=29.52 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 039009 146 VLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIV 189 (256)
Q Consensus 146 v~~~a~~v~~~iN~~l~~lr~I~~g~d~~~~lkv~~~L~vls~v 189 (256)
++++--.+..-+-.+...+.+|-++++.+.+..++++.++..++
T Consensus 97 lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~ 140 (642)
T PF11696_consen 97 LERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLL 140 (642)
T ss_pred hHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Confidence 33444445555666677888899999999988666654444443
No 35
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.69 E-value=2.7e+02 Score=24.66 Aligned_cols=62 Identities=26% Similarity=0.333 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHH-HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 039009 179 VIAGLWVVSIVGSWCNFLTLF-YIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPR 248 (256)
Q Consensus 179 v~~~L~vls~vGs~~s~lTLl-~i~~v~~FTvP~lYekyqd~ID~~~~~~~~~ik~~y~~~~~kvl~kiP~ 248 (256)
+...+|.++.-.-.||...++ |+.++--|--|++++.=++.|.-+ ..+|.+-++||-++||-
T Consensus 137 ~g~flw~~gtq~~L~npis~v~f~~V~w~ff~~Ri~~EE~~Li~fF--------g~~Y~eY~kkV~sGiPf 199 (201)
T KOG2628|consen 137 VGFFLWAAGTQTMLCNPISLVAFLLVVWRFFADRIKEEEKYLISFF--------GSSYVEYAKKVPSGIPF 199 (201)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh--------hHHHHHHHHhCCcCCCC
Confidence 445667776666667777665 445667788888888766666544 35566666788888884
No 36
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=23.41 E-value=4.3e+02 Score=25.78 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHH--HHHhchhHHHHHHHHHH
Q 039009 175 KFLSVIAGLWVVSIVGSWCNFLTLFYIVF-VLLHTVPV--IYEKYEDRVDSFSEKAW 228 (256)
Q Consensus 175 ~~lkv~~~L~vls~vGs~~s~lTLl~i~~-v~~FTvP~--lYekyqd~ID~~~~~~~ 228 (256)
.++.+++++.++...--|++..-+++.++ ..+||+-. .+--.|-+|-.+++.+.
T Consensus 344 L~i~~av~~~~~~~~~lw~~v~~l~f~i~~~~a~~V~G~i~f~~~~~ei~~~lEr~~ 400 (422)
T KOG3873|consen 344 LYISAAVFLAVLAVLLLWFTVFVLMFTIFLLIAFTVFGVIGFLVGQAEIWNLLERNG 400 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhheecceeeeeeHHHHHHHHHHHH
Confidence 33444444444444444554444444433 36677665 44566788888888754
No 37
>PRK11677 hypothetical protein; Provisional
Probab=22.85 E-value=4.2e+02 Score=21.82 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=4.4
Q ss_pred hchhHHHHHH
Q 039009 215 KYEDRVDSFS 224 (256)
Q Consensus 215 kyqd~ID~~~ 224 (256)
+|+.++..+.
T Consensus 47 ~YkqeV~~HF 56 (134)
T PRK11677 47 EYRQELVSHF 56 (134)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 38
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=22.56 E-value=5e+02 Score=23.35 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhCCc
Q 039009 231 IKKQYAVFDAKVLSKIPR 248 (256)
Q Consensus 231 ik~~y~~~~~kvl~kiP~ 248 (256)
+.+..-.+=++++++||-
T Consensus 79 ig~~l~~~~d~~L~RiPl 96 (222)
T COG2928 79 IGRSLLSLGDSLLRRIPL 96 (222)
T ss_pred hhhHHHHHHHHHHccCcc
Confidence 444555555677777774
No 39
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=22.46 E-value=1.5e+02 Score=23.03 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=27.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 039009 208 TVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDA 240 (256)
Q Consensus 208 TvP~lYekyqd~ID~~~~~~~~~ik~~y~~~~~ 240 (256)
+.=-+|.+|+++.|.....+...+++.++....
T Consensus 64 ~Wr~~Y~~~~~e~e~~~~~~~~~L~~~~~~~~~ 96 (109)
T PF06881_consen 64 SWRELYEKLKKEREEKLKEATERLRKKIKKLQQ 96 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444789999999999999988888888876654
No 40
>COG3759 Predicted membrane protein [Function unknown]
Probab=22.42 E-value=4.3e+02 Score=21.52 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCC-ceecChHHHHH
Q 039009 107 LVCHCLIVALAVLFLWSNASTFINKSPPRIP-EVYIPEEPVLQ 148 (256)
Q Consensus 107 lv~~illl~l~~~fl~s~~~~~i~k~~~~~p-~~~isee~v~~ 148 (256)
+++.++.+..++..+|=...+.+-++.++-+ -+.+++|..++
T Consensus 3 il~~Il~~lValeHfYI~yLEm~~~~S~~~~~vF~~~~e~~~~ 45 (121)
T COG3759 3 ILAIILTLLVALEHFYIVYLEMFAWESKKGSKVFRLTKEFAEQ 45 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccccchhCCCHHHHhC
Confidence 3455555555555556555555544443333 45666666654
No 41
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=21.16 E-value=80 Score=32.62 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=33.4
Q ss_pred CccccccccccccCcccchhhhcCCCcccceecccccchhHHHHHHHHHHHH
Q 039009 44 STSSLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWV 95 (256)
Q Consensus 44 ~~~~~~~~~~r~f~r~~~~h~~Lgggk~aDlLlWrn~k~Sg~vf~~~t~~w~ 95 (256)
+|+...+.+-|++-.=-+ --+-+..-++.+-.||+|++|+...++=++.|+
T Consensus 89 spdkLRa~lERlY~tv~v-~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~ 139 (642)
T PF11696_consen 89 SPDKLRANLERLYMTVVV-GLAAFIKHIARLRSWREPRRTAAFCAVYFIAWL 139 (642)
T ss_pred ChHHHHHHhHhheeehHH-HHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence 467788888888753321 111112236889999999999987766555554
No 42
>KOG3747 consensus Concentrative Na+-nucleoside cotransporter CNT1/CNT2 [Nucleotide transport and metabolism; Inorganic ion transport and metabolism]
Probab=20.05 E-value=9.5e+02 Score=24.57 Aligned_cols=42 Identities=14% Similarity=0.351 Sum_probs=27.8
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHH
Q 039009 76 LWRNKKISAGVLGGATAIWVLFQLLE--YHLLTLVCHCLIVALA 117 (256)
Q Consensus 76 lWrn~k~Sg~vf~~~t~~w~Lf~~~~--yslltlv~~illl~l~ 117 (256)
.|=-+-.....|.+++++|..|+-.+ +-++++..++..+.+.
T Consensus 149 ~w~v~~~~~~~~l~~l~~~l~~dt~~~~~qLv~f~g~v~fIl~~ 192 (602)
T KOG3747|consen 149 LWFVSLVAKAAFLAALVAWLIFDTRQDPQQLVGFGGPVFFILFL 192 (602)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccHHHhhccccHHHHHHHH
Confidence 45555666677777788899998764 5566666666554443
Done!