Query 039009
Match_columns 256
No_of_seqs 189 out of 505
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:39:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 98.2 3E-07 1E-11 68.1 0.8 58 121-178 15-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 97.4 2.3E-06 7.9E-11 60.2 -4.8 51 122-172 3-60 (60)
3 2l8s_A Integrin alpha-1; trans 43.5 43 0.0015 22.5 4.7 29 105-135 14-42 (54)
4 2knc_A Integrin alpha-IIB; tra 43.4 42 0.0014 22.5 4.6 29 105-135 17-45 (54)
5 2k1a_A Integrin alpha-IIB; sin 32.4 63 0.0022 20.5 3.9 27 105-133 15-41 (42)
6 1w53_A Phosphoserine phosphata 19.4 1.3E+02 0.0046 21.7 4.2 38 208-245 3-40 (84)
7 3vou_A ION transport 2 domain 17.9 3.3E+02 0.011 20.7 7.2 41 207-250 105-145 (148)
8 1h2v_C 80 kDa nuclear CAP bind 17.9 6.2E+02 0.021 25.3 10.1 30 202-231 151-184 (771)
9 3ci9_A Heat shock factor-bindi 15.6 2.4E+02 0.0082 18.2 4.3 32 217-248 4-35 (48)
10 2wuj_A Septum site-determining 14.2 2.2E+02 0.0074 18.7 3.9 22 216-237 21-42 (57)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=98.18 E-value=3e-07 Score=68.11 Aligned_cols=58 Identities=28% Similarity=0.273 Sum_probs=54.5
Q ss_pred HHHHHHhhhccCCCCCC-------ceecChHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 039009 121 LWSNASTFINKSPPRIP-------EVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLS 178 (256)
Q Consensus 121 l~s~~~~~i~k~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~I~~g~d~~~~lk 178 (256)
+|..+.+.++|+...+| |+.+|+|.++++++.+...+|.++..+|++++++|+..|+|
T Consensus 15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 78888999999998888 88999999999999999999999999999999999998874
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=97.44 E-value=2.3e-06 Score=60.20 Aligned_cols=51 Identities=27% Similarity=0.253 Sum_probs=44.3
Q ss_pred HHHHHhhhccCCCCCC-------ceecChHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 039009 122 WSNASTFINKSPPRIP-------EVYIPEEPVLQLASALRFEINRAFTLLREIASGRD 172 (256)
Q Consensus 122 ~s~~~~~i~k~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~I~~g~d 172 (256)
|..+.+.++|+...+| |+.+|+|.++++++.+...+|.++..+|++++++|
T Consensus 3 Yk~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 3 YKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp CCTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred HHHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 3445566777777777 88999999999999999999999999999999987
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=43.46 E-value=43 Score=22.49 Aligned_cols=29 Identities=24% Similarity=0.513 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 039009 105 LTLVCHCLIVALAVLFLWSNASTFINKSPPR 135 (256)
Q Consensus 105 ltlv~~illl~l~~~fl~s~~~~~i~k~~~~ 135 (256)
+++++-++++++++..+|. ++|++|.-++
T Consensus 14 ~svl~GLLLL~Lii~~LwK--~GFFKR~~~~ 42 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWK--IGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCcc
Confidence 4556666666666667785 6888887654
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=43.43 E-value=42 Score=22.51 Aligned_cols=29 Identities=21% Similarity=0.558 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 039009 105 LTLVCHCLIVALAVLFLWSNASTFINKSPPR 135 (256)
Q Consensus 105 ltlv~~illl~l~~~fl~s~~~~~i~k~~~~ 135 (256)
+++++-++++.+++..+|. ++|++|.-++
T Consensus 17 ~svl~GLllL~li~~~LwK--~GFFkR~~~~ 45 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWK--VGFFKRNRPP 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCCC
Confidence 4556666666666666785 5888887554
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=32.37 E-value=63 Score=20.46 Aligned_cols=27 Identities=19% Similarity=0.517 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039009 105 LTLVCHCLIVALAVLFLWSNASTFINKSP 133 (256)
Q Consensus 105 ltlv~~illl~l~~~fl~s~~~~~i~k~~ 133 (256)
+++++-++++.+.+..+|. ++|++|.-
T Consensus 15 ~s~l~GLllL~li~~~LwK--~GFFkR~~ 41 (42)
T 2k1a_A 15 VGVLGGLLLLTILVLAMWK--VGFFKRNR 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCC
Confidence 3555555666666666774 57777754
No 6
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=19.41 E-value=1.3e+02 Score=21.73 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=30.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039009 208 TVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSK 245 (256)
Q Consensus 208 TvP~lYekyqd~ID~~~~~~~~~ik~~y~~~~~kvl~k 245 (256)
+.+.+.++|++.++.++..-.++.-.+.++|...++.|
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~~~E~~Ly~~q~fs~~~iek 40 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIEH 40 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhHHHHHc
Confidence 45678899999999999888777777777887776543
No 7
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=17.91 E-value=3.3e+02 Score=20.73 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=23.6
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcch
Q 039009 207 HTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSL 250 (256)
Q Consensus 207 FTvP~lYekyqd~ID~~~~~~~~~ik~~y~~~~~kvl~kiP~~~ 250 (256)
+....+.++.+++.|..-.....++++.-+.+++ .+.|+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~---~~~~~~L 145 (148)
T 3vou_A 105 VQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAE---HSRQGSL 145 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCcCC
Confidence 3456677777788887777766665544444443 4556543
No 8
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=17.90 E-value=6.2e+02 Score=25.27 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=21.4
Q ss_pred HHHHHHHHH----HHHHhchhHHHHHHHHHHHHH
Q 039009 202 VFVLLHTVP----VIYEKYEDRVDSFSEKAWAEI 231 (256)
Q Consensus 202 ~~v~~FTvP----~lYekyqd~ID~~~~~~~~~i 231 (256)
+.+++.++| .+|++.+++.|..+++....+
T Consensus 151 v~~vL~~Lp~~G~~L~e~~~~~l~~lle~~~~yl 184 (771)
T 1h2v_C 151 VYAFLSSLPWVGKELYEKKDAEMDRIFANTESYL 184 (771)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 344556666 468888888988888876655
No 9
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=15.61 E-value=2.4e+02 Score=18.23 Aligned_cols=32 Identities=6% Similarity=0.302 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 039009 217 EDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPR 248 (256)
Q Consensus 217 qd~ID~~~~~~~~~ik~~y~~~~~kvl~kiP~ 248 (256)
-.++-.+++....+++.+.+.....+++||-.
T Consensus 4 ~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDd 35 (48)
T 3ci9_A 4 VQDLTSVVQTLLQQMQDKFQTISDQIIGRIDD 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777788888888888888887643
No 10
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=14.25 E-value=2.2e+02 Score=18.74 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=15.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 039009 216 YEDRVDSFSEKAWAEIKKQYAV 237 (256)
Q Consensus 216 yqd~ID~~~~~~~~~ik~~y~~ 237 (256)
.+++||.++..+...+...++.
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e 42 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRK 42 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999998887766655543
Done!