Query 039009
Match_columns 256
No_of_seqs 189 out of 505
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 08:39:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039009.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039009hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h2vc1 a.118.1.14 (C:29-290) 51.3 29 0.0021 28.0 8.4 32 201-232 141-176 (262)
2 d1i5za1 a.4.5.4 (A:138-206) Ca 34.2 26 0.0019 22.0 4.3 31 138-168 27-57 (69)
3 d2gaua1 a.4.5.4 (A:152-232) Tr 16.4 85 0.0062 19.7 4.2 31 138-168 27-57 (81)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 15.3 69 0.005 18.1 2.9 20 197-216 15-34 (37)
5 d2gdqa2 d.54.1.1 (A:4-118) Hyp 13.3 26 0.0019 23.9 0.8 22 47-68 92-115 (115)
6 d1muca2 d.54.1.1 (A:4-130) Muc 11.0 33 0.0024 23.2 0.7 22 47-68 104-127 (127)
7 d2nn6e2 d.101.1.1 (E:192-285) 10.4 1.6E+02 0.012 19.1 4.3 26 217-242 58-83 (94)
8 d2chra2 d.54.1.1 (A:1-126) Chl 9.8 39 0.0029 23.3 0.7 21 48-68 104-126 (126)
9 d2je6a2 d.101.1.1 (A:192-275) 9.8 1.8E+02 0.013 18.2 4.4 24 217-240 57-80 (84)
10 d1q90l_ f.23.24.1 (L:) PetL su 9.2 1.5E+02 0.011 15.8 3.9 17 105-121 2-18 (32)
No 1
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.32 E-value=29 Score=27.96 Aligned_cols=32 Identities=25% Similarity=0.479 Sum_probs=22.8
Q ss_pred HHHHHHHHHHH----HHHhchhHHHHHHHHHHHHHH
Q 039009 201 IVFVLLHTVPV----IYEKYEDRVDSFSEKAWAEIK 232 (256)
Q Consensus 201 i~~v~~FTvP~----lYekyqd~ID~~~~~~~~~ik 232 (256)
++.+.+.|+|- +|+++.++.++.++.+...++
T Consensus 141 ~~~~vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~~ 176 (262)
T d1h2vc1 141 YVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLK 176 (262)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 45566777774 578888888888888765554
No 2
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.20 E-value=26 Score=22.02 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=27.8
Q ss_pred ceecChHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039009 138 EVYIPEEPVLQLASALRFEINRAFTLLREIA 168 (256)
Q Consensus 138 ~~~isee~v~~~a~~v~~~iN~~l~~lr~I~ 168 (256)
.+.++++.+-+++..-++.+|+.+..+++--
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~g 57 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQN 57 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 5789999999999999999999999998743
No 3
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=16.36 E-value=85 Score=19.71 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=27.0
Q ss_pred ceecChHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039009 138 EVYIPEEPVLQLASALRFEINRAFTLLREIA 168 (256)
Q Consensus 138 ~~~isee~v~~~a~~v~~~iN~~l~~lr~I~ 168 (256)
.+.++.+.+-+++..-++.+|+.+..+++--
T Consensus 27 ~~~lt~~eLA~~~G~sretvsr~L~~l~~~g 57 (81)
T d2gaua1 27 SIYLSREELATLSNMTVSNAIRTLSTFVSER 57 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred eecCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 5678899999999999999999999998743
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.27 E-value=69 Score=18.13 Aligned_cols=20 Identities=20% Similarity=0.639 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 039009 197 TLFYIVFVLLHTVPVIYEKY 216 (256)
Q Consensus 197 TLl~i~~v~~FTvP~lYeky 216 (256)
|-+|.|.++.|.+-+++..|
T Consensus 15 tsLy~GlLlifvl~vLFssY 34 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44566666666666665544
No 5
>d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}
Probab=13.29 E-value=26 Score=23.94 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=15.2
Q ss_pred ccccccccccC--cccchhhhcCC
Q 039009 47 SLKTKVFRLFG--REKPVHKVLGG 68 (256)
Q Consensus 47 ~~~~~~~r~f~--r~~~~h~~Lgg 68 (256)
++.-...-++| ..+|++++|||
T Consensus 92 aid~AlwDl~~K~~~~Pl~~lLGG 115 (115)
T d2gdqa2 92 AVSMALTEIAAKAADCSVCELWGG 115 (115)
T ss_dssp HHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHcCC
Confidence 44444555555 46899999998
No 6
>d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]}
Probab=10.99 E-value=33 Score=23.23 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=14.5
Q ss_pred ccccccccccC--cccchhhhcCC
Q 039009 47 SLKTKVFRLFG--REKPVHKVLGG 68 (256)
Q Consensus 47 ~~~~~~~r~f~--r~~~~h~~Lgg 68 (256)
++.-...-++| ..+|++++|||
T Consensus 104 aid~AlwDl~~K~~g~Pl~~lLGG 127 (127)
T d1muca2 104 GIESALLDAQGKRLGLPVSELLGG 127 (127)
T ss_dssp HHHHHHHHHHHHHHTCBHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCHHHHcCC
Confidence 34444445555 46799999998
No 7
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.43 E-value=1.6e+02 Score=19.14 Aligned_cols=26 Identities=15% Similarity=-0.004 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039009 217 EDRVDSFSEKAWAEIKKQYAVFDAKV 242 (256)
Q Consensus 217 qd~ID~~~~~~~~~ik~~y~~~~~kv 242 (256)
.++|+..++.|....++.++.+++.+
T Consensus 58 ~~~i~~~i~~A~~~~~el~~~l~~~L 83 (94)
T d2nn6e2 58 PESIFEMMETGKRVGKVLHASLQSVV 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999988888887777544
No 8
>d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=9.78 E-value=39 Score=23.34 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=13.8
Q ss_pred cccccccccC--cccchhhhcCC
Q 039009 48 LKTKVFRLFG--REKPVHKVLGG 68 (256)
Q Consensus 48 ~~~~~~r~f~--r~~~~h~~Lgg 68 (256)
+.....-++| ..+|++++|||
T Consensus 104 id~AlwDl~~K~~~~pl~~llGG 126 (126)
T d2chra2 104 VEMALLDLKARALGVSIAELLGG 126 (126)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHcCc
Confidence 3334444554 46799999998
No 9
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=9.76 E-value=1.8e+02 Score=18.15 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 039009 217 EDRVDSFSEKAWAEIKKQYAVFDA 240 (256)
Q Consensus 217 qd~ID~~~~~~~~~ik~~y~~~~~ 240 (256)
+++|.+.++.|....++.++.+++
T Consensus 57 ~~~i~~~i~~A~~~~~~l~~~l~~ 80 (84)
T d2je6a2 57 LQDIDQAENTARSTAVKLLEELKK 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899988888888777664
No 10
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.19 E-value=1.5e+02 Score=15.82 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039009 105 LTLVCHCLIVALAVLFL 121 (256)
Q Consensus 105 ltlv~~illl~l~~~fl 121 (256)
+|+.+|+.++.-+..|-
T Consensus 2 lti~syvglligal~~t 18 (32)
T d1q90l_ 2 LTITSYVGLLIGALVFT 18 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHH
Confidence 57788887776555553
Done!