Query 039012
Match_columns 876
No_of_seqs 392 out of 1759
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 100.0 2.9E-70 6.2E-75 618.5 39.1 381 407-828 616-1001(1102)
2 smart00498 FH2 Formin Homology 100.0 2E-66 4.4E-71 593.4 36.6 376 410-828 3-382 (432)
3 PF02181 FH2: Formin Homology 100.0 2.9E-62 6.2E-67 548.8 32.5 364 409-817 3-370 (370)
4 KOG1922 Rho GTPase effector BN 100.0 2.2E-52 4.8E-57 512.8 38.3 431 411-871 390-829 (833)
5 KOG1923 Rac1 GTPase effector F 100.0 2E-51 4.4E-56 469.3 29.7 370 408-828 362-738 (830)
6 KOG1925 Rac1 GTPase effector F 100.0 8.6E-39 1.9E-43 349.6 30.1 363 411-828 278-655 (817)
7 KOG1924 RhoA GTPase effector D 99.0 3.9E-08 8.5E-13 114.9 23.2 69 586-664 750-818 (1102)
8 smart00498 FH2 Formin Homology 98.0 2.8E-05 6E-10 90.2 11.1 124 701-824 300-432 (432)
9 PHA03247 large tegument protei 97.5 0.0092 2E-07 79.0 22.7 10 56-65 2535-2544(3151)
10 PHA03247 large tegument protei 97.4 0.01 2.2E-07 78.6 21.0 6 590-595 3114-3119(3151)
11 KOG3671 Actin regulatory prote 96.4 0.014 3E-07 67.1 9.3 16 410-425 474-489 (569)
12 KOG3671 Actin regulatory prote 95.7 0.036 7.7E-07 63.8 8.8 9 16-24 39-47 (569)
13 KOG1923 Rac1 GTPase effector F 95.7 0.048 1E-06 65.7 10.1 31 592-622 555-585 (830)
14 KOG1922 Rho GTPase effector BN 94.8 11 0.00024 47.8 27.8 38 582-619 615-652 (833)
15 PF13908 Shisa: Wnt and FGF in 94.1 0.16 3.5E-06 52.1 7.9 9 252-260 92-100 (179)
16 PRK15319 AIDA autotransporter- 92.6 0.16 3.4E-06 66.6 5.8 8 432-439 1762-1769(2039)
17 PF04478 Mid2: Mid2 like cell 87.8 0.1 2.3E-06 51.9 -1.3 34 236-269 47-82 (154)
18 KOG4672 Uncharacterized conser 85.8 64 0.0014 37.3 18.7 11 501-511 470-480 (487)
19 PF13908 Shisa: Wnt and FGF in 82.3 4.9 0.00011 41.2 7.9 19 246-264 89-107 (179)
20 PF01102 Glycophorin_A: Glycop 81.2 1.1 2.5E-05 43.4 2.5 27 237-266 67-93 (122)
21 PRK15313 autotransport protein 80.9 3.7 8E-05 51.6 7.3 13 628-640 771-783 (955)
22 PRK15313 autotransport protein 80.8 3.3 7.3E-05 52.0 6.9 7 432-438 677-683 (955)
23 KOG1925 Rac1 GTPase effector F 79.8 4.3 9.2E-05 47.4 6.8 21 407-427 295-315 (817)
24 COG5178 PRP8 U5 snRNP spliceos 78.9 1.4 3.1E-05 55.3 2.9 6 601-606 636-641 (2365)
25 COG5178 PRP8 U5 snRNP spliceos 76.7 1.8 3.9E-05 54.5 2.9 7 433-439 131-137 (2365)
26 PHA03291 envelope glycoprotein 75.3 18 0.00039 40.9 9.8 31 11-42 7-37 (401)
27 PF05454 DAG1: Dystroglycan (D 75.3 0.92 2E-05 50.2 0.0 32 232-265 142-173 (290)
28 KOG1830 Wiskott Aldrich syndro 74.8 23 0.00049 40.9 10.6 6 493-498 466-471 (518)
29 KOG0994 Extracellular matrix g 72.7 3.2E+02 0.0068 36.0 22.6 22 727-748 1660-1681(1758)
30 KOG0994 Extracellular matrix g 72.1 1.6E+02 0.0034 38.6 17.5 20 603-622 1470-1489(1758)
31 KOG4849 mRNA cleavage factor I 71.6 24 0.00051 39.8 9.6 20 238-259 96-115 (498)
32 KOG1830 Wiskott Aldrich syndro 69.5 27 0.00059 40.3 9.7 9 491-499 489-497 (518)
33 KOG4849 mRNA cleavage factor I 69.5 1.7E+02 0.0038 33.3 15.6 16 443-458 355-370 (498)
34 PF05393 Hum_adeno_E3A: Human 69.4 3.8 8.2E-05 37.3 2.4 25 250-274 43-67 (94)
35 PRK09752 adhesin; Provisional 69.0 4.4 9.5E-05 52.1 3.8 6 433-438 986-991 (1250)
36 PF10873 DUF2668: Protein of u 67.9 9.1 0.0002 38.1 4.9 30 234-263 57-86 (155)
37 PF02439 Adeno_E3_CR2: Adenovi 67.7 9.2 0.0002 29.7 3.9 9 238-246 7-15 (38)
38 PRK14950 DNA polymerase III su 64.9 20 0.00044 43.7 8.3 9 35-43 42-50 (585)
39 PF02480 Herpes_gE: Alphaherpe 64.3 2.2 4.8E-05 50.1 0.0 30 237-266 351-380 (439)
40 PF14914 LRRC37AB_C: LRRC37A/B 62.8 9.1 0.0002 38.2 3.9 27 232-259 114-140 (154)
41 KOG4590 Signal transduction pr 60.9 17 0.00037 42.3 6.3 16 94-109 44-60 (409)
42 PF14575 EphA2_TM: Ephrin type 60.9 9.4 0.0002 33.9 3.3 24 240-263 2-25 (75)
43 PF01034 Syndecan: Syndecan do 58.2 3.9 8.4E-05 35.2 0.4 21 238-258 9-29 (64)
44 PF12868 DUF3824: Domain of un 57.7 1.4E+02 0.0029 29.9 11.1 14 235-248 5-18 (137)
45 PF04108 APG17: Autophagy prot 57.1 3.8E+02 0.0082 31.4 16.7 25 693-718 235-259 (412)
46 KOG1962 B-cell receptor-associ 53.2 3.2E+02 0.0069 29.4 14.3 70 550-620 11-80 (216)
47 KOG2236 Uncharacterized conser 52.8 88 0.0019 36.8 10.1 19 84-102 186-205 (483)
48 PF10234 Cluap1: Clusterin-ass 52.8 2E+02 0.0044 31.8 12.5 31 627-657 106-144 (267)
49 PF12877 DUF3827: Domain of un 52.2 9.1 0.0002 46.3 2.3 30 237-266 269-298 (684)
50 KOG2675 Adenylate cyclase-asso 52.0 13 0.00028 43.2 3.3 18 541-558 451-468 (480)
51 PF05518 Totivirus_coat: Totiv 49.5 42 0.00091 41.7 7.3 6 130-135 480-485 (759)
52 PF15069 FAM163: FAM163 family 49.3 8.7 0.00019 38.2 1.3 22 239-260 7-28 (143)
53 KOG0132 RNA polymerase II C-te 46.4 89 0.0019 39.0 9.2 20 235-254 420-439 (894)
54 PF05518 Totivirus_coat: Totiv 46.4 81 0.0018 39.3 9.0 7 107-113 371-377 (759)
55 PF15065 NCU-G1: Lysosomal tra 45.8 14 0.0003 42.2 2.5 29 239-267 321-349 (350)
56 PF03310 Cauli_DNA-bind: Cauli 45.7 1E+02 0.0022 30.1 7.8 47 726-772 4-50 (121)
57 PHA03378 EBNA-3B; Provisional 45.7 1.3E+02 0.0028 37.1 10.2 13 92-104 294-306 (991)
58 PHA03378 EBNA-3B; Provisional 45.5 1.2E+02 0.0026 37.4 9.9 9 4-12 263-271 (991)
59 KOG0804 Cytoplasmic Zn-finger 45.1 1.7E+02 0.0037 34.5 10.8 95 695-793 353-451 (493)
60 PF04108 APG17: Autophagy prot 44.2 5.9E+02 0.013 29.8 19.2 71 756-826 192-263 (412)
61 PF08693 SKG6: Transmembrane a 43.0 2.2 4.8E-05 33.4 -3.0 11 238-248 12-22 (40)
62 smart00806 AIP3 Actin interact 41.3 1.4E+02 0.003 35.1 9.4 58 723-780 252-320 (426)
63 KOG0260 RNA polymerase II, lar 40.7 1.1E+02 0.0024 40.0 9.0 8 13-20 1341-1348(1605)
64 smart00503 SynN Syntaxin N-ter 39.6 3.1E+02 0.0067 25.4 12.4 60 726-785 13-72 (117)
65 PLN00034 mitogen-activated pro 39.6 84 0.0018 35.0 7.5 10 590-599 177-186 (353)
66 PF06013 WXG100: Proteins of 1 39.6 2.4E+02 0.0052 24.0 10.0 62 760-825 8-69 (86)
67 PF07204 Orthoreo_P10: Orthore 38.3 20 0.00043 33.2 1.8 28 237-264 40-67 (98)
68 KOG2675 Adenylate cyclase-asso 37.7 72 0.0016 37.3 6.4 28 116-143 180-207 (480)
69 PF06365 CD34_antigen: CD34/Po 37.6 17 0.00038 38.3 1.5 27 239-265 101-127 (202)
70 PF08374 Protocadherin: Protoc 36.7 15 0.00032 39.0 0.8 21 236-256 36-56 (221)
71 KOG0391 SNF2 family DNA-depend 36.4 3E+02 0.0065 36.5 11.7 18 36-53 1562-1581(1958)
72 PF15347 PAG: Phosphoprotein a 36.4 30 0.00064 39.5 3.1 34 236-269 13-46 (428)
73 PF14523 Syntaxin_2: Syntaxin- 36.4 2.2E+02 0.0048 25.9 8.5 31 750-780 24-54 (102)
74 PF05278 PEARLI-4: Arabidopsis 35.4 4.8E+02 0.01 29.0 11.9 19 646-665 95-113 (269)
75 cd07593 BAR_MUG137_fungi The B 34.7 1.7E+02 0.0036 31.3 8.3 24 575-598 4-27 (215)
76 PRK10404 hypothetical protein; 34.4 1.9E+02 0.0042 27.2 7.7 44 755-798 37-81 (101)
77 PRK10132 hypothetical protein; 34.1 2.1E+02 0.0046 27.3 8.0 44 755-798 44-87 (108)
78 PF10147 CR6_interact: Growth 33.5 4.8E+02 0.01 28.1 11.3 47 774-828 150-196 (217)
79 KOG0132 RNA polymerase II C-te 33.4 2.3E+02 0.0049 35.6 9.9 6 288-293 479-484 (894)
80 PF04625 DEC-1_N: DEC-1 protei 32.5 98 0.0021 34.8 6.1 26 576-601 284-309 (407)
81 PF05659 RPW8: Arabidopsis bro 32.3 1.1E+02 0.0023 30.9 6.0 87 518-609 37-132 (147)
82 cd00179 SynN Syntaxin N-termin 32.1 4.8E+02 0.011 25.3 11.4 33 754-786 39-71 (151)
83 PF05478 Prominin: Prominin; 32.0 49 0.0011 42.0 4.4 19 720-738 621-639 (806)
84 KOG2391 Vacuolar sorting prote 31.9 1.4E+02 0.0031 33.9 7.3 21 578-598 253-273 (365)
85 PRK12270 kgd alpha-ketoglutara 31.0 1.7E+02 0.0036 38.0 8.5 26 803-828 798-823 (1228)
86 KOG2391 Vacuolar sorting prote 30.9 1.5E+02 0.0033 33.7 7.3 10 581-590 263-272 (365)
87 PF01213 CAP_N: Adenylate cycl 30.4 17 0.00037 40.9 0.0 21 351-371 225-245 (312)
88 PF03114 BAR: BAR domain; Int 30.4 5.9E+02 0.013 25.8 12.5 24 576-599 24-47 (229)
89 PRK11637 AmiB activator; Provi 30.2 5.6E+02 0.012 29.9 12.5 31 760-790 100-130 (428)
90 PF07213 DAP10: DAP10 membrane 30.2 79 0.0017 28.6 4.1 47 232-284 27-75 (79)
91 KOG4025 Putative apoptosis rel 30.0 1.8E+02 0.0039 29.9 7.1 70 485-554 31-105 (207)
92 PF08336 P4Ha_N: Prolyl 4-Hydr 29.9 4.3E+02 0.0094 25.7 9.8 66 755-826 14-83 (134)
93 PHA03190 UL14 tegument protein 29.9 1.3E+02 0.0028 31.5 6.1 22 94-115 115-136 (196)
94 PRK11637 AmiB activator; Provi 29.8 4.1E+02 0.0089 31.0 11.3 30 758-787 105-135 (428)
95 PF15050 SCIMP: SCIMP protein 29.7 42 0.00092 32.5 2.5 23 239-263 10-32 (133)
96 PF10577 UPF0560: Uncharacteri 29.2 72 0.0016 40.0 4.9 56 234-294 269-329 (807)
97 PF15035 Rootletin: Ciliary ro 29.1 3.4E+02 0.0074 28.3 9.3 34 708-745 86-119 (182)
98 PF07544 Med9: RNA polymerase 28.9 4.3E+02 0.0094 23.8 8.8 28 719-746 19-46 (83)
99 PF04420 CHD5: CHD5-like prote 28.3 2.1E+02 0.0046 29.1 7.5 58 727-788 39-98 (161)
100 PF01544 CorA: CorA-like Mg2+ 28.1 7.3E+02 0.016 26.5 12.3 20 725-744 155-174 (292)
101 PF01034 Syndecan: Syndecan do 28.0 20 0.00043 31.1 0.0 29 233-261 8-36 (64)
102 KOG0933 Structural maintenance 27.9 8E+02 0.017 32.1 13.4 32 588-621 599-630 (1174)
103 COG4575 ElaB Uncharacterized c 27.7 2.9E+02 0.0064 26.3 7.6 43 755-797 40-83 (104)
104 PF01299 Lamp: Lysosome-associ 27.4 54 0.0012 36.6 3.3 29 238-266 270-299 (306)
105 KOG2893 Zn finger protein [Gen 27.3 5.4E+02 0.012 28.0 10.3 6 81-86 60-65 (341)
106 cd07667 BAR_SNX30 The Bin/Amph 27.3 8.5E+02 0.018 26.6 12.7 49 597-646 4-52 (240)
107 PF10779 XhlA: Haemolysin XhlA 26.9 70 0.0015 28.0 3.3 22 235-256 48-69 (71)
108 KOG1984 Vesicle coat complex C 25.9 1.6E+03 0.034 29.2 22.3 19 647-665 644-662 (1007)
109 PF04625 DEC-1_N: DEC-1 protei 25.8 1.5E+02 0.0033 33.3 6.2 9 647-655 326-334 (407)
110 KOG4848 Extracellular matrix-a 25.3 6.8E+02 0.015 26.5 10.3 43 778-828 165-207 (225)
111 cd07651 F-BAR_PombeCdc15_like 25.0 3.9E+02 0.0084 28.6 9.2 69 758-826 152-230 (236)
112 PF04156 IncA: IncA protein; 24.4 7.4E+02 0.016 25.3 10.9 27 763-789 123-149 (191)
113 PF14712 Snapin_Pallidin: Snap 24.0 2.8E+02 0.0061 25.0 6.8 72 756-828 7-78 (92)
114 PF15112 DUF4559: Domain of un 23.8 4.9E+02 0.011 29.4 9.7 130 649-814 124-267 (307)
115 PF10168 Nup88: Nuclear pore c 23.7 6.6E+02 0.014 31.8 12.0 49 769-817 599-649 (717)
116 KOG1219 Uncharacterized conser 23.5 1.7E+02 0.0037 41.2 6.9 42 239-286 3996-4037(4289)
117 PF15234 LAT: Linker for activ 23.5 3.7E+02 0.008 28.2 8.0 8 256-263 25-32 (230)
118 PF06809 NPDC1: Neural prolife 23.4 1.3E+02 0.0029 33.8 5.3 8 257-264 217-224 (341)
119 PF02439 Adeno_E3_CR2: Adenovi 23.3 70 0.0015 25.0 2.2 27 238-264 3-31 (38)
120 PRK07764 DNA polymerase III su 23.2 2.3E+02 0.005 36.3 8.1 7 420-426 514-520 (824)
121 KOG1094 Discoidin domain recep 22.9 2.2E+02 0.0048 35.0 7.2 13 610-622 662-674 (807)
122 PF15176 LRR19-TM: Leucine-ric 22.9 90 0.002 29.5 3.3 31 234-264 14-46 (102)
123 PF14610 DUF4448: Protein of u 22.7 23 0.0005 36.7 -0.7 32 237-268 156-187 (189)
124 PRK14948 DNA polymerase III su 22.7 2.6E+02 0.0057 34.6 8.2 22 119-140 322-343 (620)
125 KOG0559 Dihydrolipoamide succi 22.2 1.6E+02 0.0036 33.7 5.7 12 617-628 368-382 (457)
126 PF07889 DUF1664: Protein of u 21.9 4.9E+02 0.011 25.6 8.3 12 705-716 45-56 (126)
127 PF10158 LOH1CR12: Tumour supp 21.8 7.9E+02 0.017 24.3 9.9 29 712-740 40-68 (131)
128 PTZ00208 65 kDa invariant surf 21.8 70 0.0015 37.1 2.8 33 232-264 381-413 (436)
129 PF07462 MSP1_C: Merozoite sur 21.7 2E+02 0.0043 34.8 6.4 24 598-621 412-435 (574)
130 PF04906 Tweety: Tweety; Inte 21.4 1.1E+02 0.0024 35.7 4.5 40 757-796 316-357 (406)
131 PF08359 TetR_C_4: YsiA-like p 21.2 1.8E+02 0.004 27.6 5.3 22 805-826 62-83 (133)
132 COG3883 Uncharacterized protei 21.1 5.6E+02 0.012 28.4 9.4 9 809-817 129-137 (265)
133 PF05957 DUF883: Bacterial pro 20.8 4.3E+02 0.0093 24.1 7.4 41 757-797 32-73 (94)
134 PHA03211 serine/threonine kina 20.6 1.1E+02 0.0023 36.3 4.2 30 586-619 265-294 (461)
135 PF10805 DUF2730: Protein of u 20.3 5.6E+02 0.012 24.2 8.2 68 718-790 32-99 (106)
136 PF10146 zf-C4H2: Zinc finger- 20.2 5.9E+02 0.013 27.6 9.3 8 761-768 65-72 (230)
137 PF09738 DUF2051: Double stran 20.1 7.2E+02 0.016 28.1 10.2 84 693-788 89-172 (302)
138 KOG0251 Clathrin assembly prot 20.0 4.9E+02 0.011 31.4 9.4 73 754-826 217-294 (491)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2.9e-70 Score=618.51 Aligned_cols=381 Identities=25% Similarity=0.394 Sum_probs=335.9
Q ss_pred cccccccccCcccccccccccCC-CCcccccccccCccccc--hHHHHhhhccCCCCCccccCCCCCCCCCccccccccc
Q 039012 407 EGESGAAKTKLKPFFWDKVLASP-DHAMVWHEISSGSFQFN--EEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQI 483 (876)
Q Consensus 407 ~~~s~~pk~KLK~l~W~KI~~~~-~~~TIW~~i~~~s~~lD--~e~lE~lF~~k~~~~~k~~~kk~~s~s~~~~~~~vsl 483 (876)
......+...||+++|.+|.+.. .++.+|-..+++.+.-| +..++..|+.+...++...+.-+..+..+++.+...|
T Consensus 616 pKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~i 695 (1102)
T KOG1924|consen 616 PKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRI 695 (1102)
T ss_pred ccccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhhee
Confidence 45667788999999999997653 57899999998876543 4667888998854432222111111234667788999
Q ss_pred CChhHHHHHHHHHhhcCCCHHHHHHHHhhCC--CCCHHHHHHHHhcCCChHHHHHhhcCCCCCCCCChHHHHHHHhcCcc
Q 039012 484 IDTRKAQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIP 561 (876)
Q Consensus 484 LD~KraqNi~I~L~~lk~s~eeI~~aI~~~d--~L~~e~L~~Llk~~Pt~eE~~~L~~~~gd~~~L~~aEqFl~~l~~Ip 561 (876)
||.|.|||++|+|..|+++++||..+|++.| .|++.+|++|++.+|..|.+.+|+++..+.+.|.+.|||...|..|+
T Consensus 696 lDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vk 775 (1102)
T KOG1924|consen 696 LDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQVK 775 (1102)
T ss_pred cchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhcc
Confidence 9999999999999999999999999999987 49999999999999999999999998888889999999999999999
Q ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhccc
Q 039012 562 FAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVK 641 (876)
Q Consensus 562 ~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~K 641 (876)
++..||.+++|+.+|.+.+++|++.+..+..||++||+|+.|.+||++||.+|||||+|+...+|+||.|+.|.||.|||
T Consensus 776 rL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTK 855 (1102)
T KOG1924|consen 776 RLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTK 855 (1102)
T ss_pred ccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHHhhc
Q 039012 642 GTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVI 721 (876)
Q Consensus 642 s~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kAA~v 721 (876)
++|+|+||||||++.+. +.|.+ +..|.+||++|.+|++|
T Consensus 856 saDqk~TLLHfLae~~e------------------------------------~kypd-----~l~F~ddl~hv~kaSrv 894 (1102)
T KOG1924|consen 856 SADQKTTLLHFLAEICE------------------------------------EKYPD-----ILKFPDDLEHVEKASRV 894 (1102)
T ss_pred ccchhhHHHHHHHHHHH------------------------------------HhChh-----hhcchhhHHHHHhhccc
Confidence 99999999999997442 23332 56788999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccc
Q 039012 722 DADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDE 801 (876)
Q Consensus 722 d~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k~e 801 (876)
+++.|...+..+...+++++..+....-.-.++|.|.++|..|.++|.+++..|.....+|+.+|+++.+||..|++|..
T Consensus 895 nad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkys 974 (1102)
T KOG1924|consen 895 NADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYS 974 (1102)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCc
Confidence 99999999999999998887665433222346899999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012 802 GLRLFTIVRDFLIMLDKSCKQVKITTK 828 (876)
Q Consensus 802 ~~~fF~iv~dFl~~f~ka~kEv~~~~~ 828 (876)
.++||+.+++|..+|..|.+|+.+.++
T Consensus 975 mEEFFaDi~tFrnaf~ea~~en~krRe 1001 (1102)
T KOG1924|consen 975 MEEFFADIRTFRNAFLEAVAENEKRRE 1001 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988766
No 2
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=2e-66 Score=593.40 Aligned_cols=376 Identities=31% Similarity=0.512 Sum_probs=334.4
Q ss_pred ccccccCcccccccccccCCCCcccccccccCccccchHHHHhhhccCCCCCccccC-CCCCCCCCcccccccccCChhH
Q 039012 410 SGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNEC-GKSNSVSSESSAQYIQIIDTRK 488 (876)
Q Consensus 410 s~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s~~lD~e~lE~lF~~k~~~~~k~~~-kk~~s~s~~~~~~~vslLD~Kr 488 (876)
...|+.+||++||+||.++++.+|||+++++.+ .+|+++||++|+.++........ ....+....++.+.|+|||+||
T Consensus 3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~kr 81 (432)
T smart00498 3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKR 81 (432)
T ss_pred CCCCCCCCcCcCceeCCCccccCChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhH
Confidence 356889999999999999889999999999876 79999999999987643321110 0000112334567899999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhhCC--CCCHHHHHHHHhcCCChHHHHHhhcCCCC-CCCCChHHHHHHHhcCcccHHH
Q 039012 489 AQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTLLKMAPTTDEELKLRLFPGD-ISQLGPAERFLKTLVDIPFAFK 565 (876)
Q Consensus 489 aqNi~I~L~~lk~s~eeI~~aI~~~d--~L~~e~L~~Llk~~Pt~eE~~~L~~~~gd-~~~L~~aEqFl~~l~~Ip~~~~ 565 (876)
+|||+|+|++|++++++|++||+++| .|+.|.|+.|++++||.||+..|+.|.|+ .+.|+++|||++.|++||++..
T Consensus 82 s~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~ 161 (432)
T smart00498 82 SQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEE 161 (432)
T ss_pred HhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999988 59999999999999999999999999887 8999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhcccCCCC
Q 039012 566 RIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDG 645 (876)
Q Consensus 566 RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~Ks~D~ 645 (876)
||+||+|+.+|++++.+|.+.|.++..||++|++|+.|++||++||++|||||+|+.||+|+||+|++|.||.|||++|+
T Consensus 162 Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~ 241 (432)
T smart00498 162 RLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADN 241 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHHhhccHHH
Q 039012 646 KTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDADS 725 (876)
Q Consensus 646 k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kAA~vd~d~ 725 (876)
++|||||||+.|.++++ + +..|.+||..|..|++++ +.
T Consensus 242 k~tLLhylv~~i~~~~p---------------------~--------------------~~~f~~el~~v~~askvs-~~ 279 (432)
T smart00498 242 KTTLLHFLVKIIRKKYP---------------------D--------------------LLDFYSDLHHLDKAKVNL-EQ 279 (432)
T ss_pred CccHHHHHHHHHHHhCh---------------------h--------------------hccchhhhccHHHHHHHH-HH
Confidence 99999999998865442 1 345778999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccchhhh
Q 039012 726 VTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRL 805 (876)
Q Consensus 726 L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k~e~~~f 805 (876)
|..++++|.+++..++..+..-......+++|..+|..|+..|+.++..|....+++...+++++.||||++....+.+|
T Consensus 280 l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~ef 359 (432)
T smart00498 280 LEKDVKQLERQIKNLETDLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEF 359 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 99999999999988865433211122345899999999999999999999999999999999999999999998788999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcC
Q 039012 806 FTIVRDFLIMLDKSCKQVKITTK 828 (876)
Q Consensus 806 F~iv~dFl~~f~ka~kEv~~~~~ 828 (876)
|++|.+|+..|.+|++|+.+.++
T Consensus 360 F~~f~~F~~~f~ka~~en~~~~~ 382 (432)
T smart00498 360 FKDFNEFLKEFSKAAEENIKKEE 382 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999977655
No 3
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=2.9e-62 Score=548.85 Aligned_cols=364 Identities=34% Similarity=0.556 Sum_probs=308.7
Q ss_pred cccccccCcccccccccccCCCCcccccccccCc--cccchHHHHhhhccCCCCCccccCCCCCCCCCcccccccccCCh
Q 039012 409 ESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGS--FQFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDT 486 (876)
Q Consensus 409 ~s~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s--~~lD~e~lE~lF~~k~~~~~k~~~kk~~s~s~~~~~~~vslLD~ 486 (876)
....|+.+||++||++|......+|||+++.... ..+|++++|++|+.+........ ......++++.++|||+
T Consensus 3 ~~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~~----~~~~~~~~~~~~~iLd~ 78 (370)
T PF02181_consen 3 KKPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSKK----KQASKKKKKKKISILDP 78 (370)
T ss_dssp -----SS-B------EESSGGCTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH--------HCCCCTTCCESSS-H
T ss_pred CCCCCCCCCcCCCceecCcccccCCccccCcccccchhhhHHHHHHHhccccccccccc----cccccccccccccccch
Confidence 3467889999999999998889999999998765 46899999999998875422111 01234456788999999
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHhhCCC--CCHHHHHHHHhcCCChHHHHHhhcCCCCCCCCChHHHHHHHhcCcccHH
Q 039012 487 RKAQNLSIILRALNLTSEEVVDALEEGNE--LPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIPFAF 564 (876)
Q Consensus 487 KraqNi~I~L~~lk~s~eeI~~aI~~~d~--L~~e~L~~Llk~~Pt~eE~~~L~~~~gd~~~L~~aEqFl~~l~~Ip~~~ 564 (876)
||+|||+|+|++|++++++|++||..+|. |+.|.|+.|++++||.||+..+++|.++...|+++|+|++.|+.||++.
T Consensus 79 kr~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~~ip~~~ 158 (370)
T PF02181_consen 79 KRSQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELSKIPRLK 158 (370)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHTTSTTHH
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998874 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhcccCCC
Q 039012 565 KRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTD 644 (876)
Q Consensus 565 ~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~Ks~D 644 (876)
.||+||+|+.+|++++.++...|..+..||++|++|..|+++|++||++|||||+|+.+|+|.||+|++|.||.+||++|
T Consensus 159 ~rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d 238 (370)
T PF02181_consen 159 ERLEALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSND 238 (370)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-ST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHHhhccHH
Q 039012 645 GKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDAD 724 (876)
Q Consensus 645 ~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kAA~vd~d 724 (876)
+++|||||||+.+.++. + .+..|.+||..|..|+++|++
T Consensus 239 ~~~tLL~~l~~~~~~~~---------------------~--------------------~~~~~~~eL~~v~~a~~~~~~ 277 (370)
T PF02181_consen 239 NKTTLLHYLVKIVEEKF---------------------P--------------------DLLDLEDELSSVEKASKVSLD 277 (370)
T ss_dssp TTSBHHHHHHHHHHTTS---------------------G--------------------GGGGHHHHTTTHHHCCTS-HH
T ss_pred CCchHHHHHHHHHHhcC---------------------h--------------------HHhccHHHHhhHHhhhhhhHH
Confidence 99999999998664311 1 134567899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccchhh
Q 039012 725 SVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLR 804 (876)
Q Consensus 725 ~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k~e~~~ 804 (876)
+|..++.+|.+++..++..++......+.++.|...|..|++.++.++..|++.++++.+.+++++.||||++.+..+.+
T Consensus 278 ~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ 357 (370)
T PF02181_consen 278 ELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEE 357 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 99999999999999999887655444567899999999999999999999999999999999999999999999888999
Q ss_pred hhHHHHHHHHHHH
Q 039012 805 LFTIVRDFLIMLD 817 (876)
Q Consensus 805 fF~iv~dFl~~f~ 817 (876)
||++|.+|+.+|+
T Consensus 358 ff~~l~~F~~~fk 370 (370)
T PF02181_consen 358 FFKILSQFIDMFK 370 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999985
No 4
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2.2e-52 Score=512.80 Aligned_cols=431 Identities=38% Similarity=0.575 Sum_probs=370.8
Q ss_pred cccccCcccccccccccCCCCcccccccccCccccch---HHHHhhhccCCCCCccccCCCCCCCCCcccccccccCChh
Q 039012 411 GAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQFNE---EMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIIDTR 487 (876)
Q Consensus 411 ~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s~~lD~---e~lE~lF~~k~~~~~k~~~kk~~s~s~~~~~~~vslLD~K 487 (876)
..+..+|+++||+++..+....++|+++..+++.+|. +++|.+|++......................+.+.++|.+
T Consensus 390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~r 469 (833)
T KOG1922|consen 390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLKVLDPR 469 (833)
T ss_pred CCCCCCCCCccccccCCCCccCCCCCccccCCcCCCCCcccccccchhhhhcccCCCCCCCccccccccccccccccCCC
Confidence 5678999999999999999999999999999988888 9999999887654333321111001112223679999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhCCC--CCHHHHHHHHhcCCChHHHHHhhcCCCCCCCCChHHHHHHH-hcCcccHH
Q 039012 488 KAQNLSIILRALNLTSEEVVDALEEGNE--LPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKT-LVDIPFAF 564 (876)
Q Consensus 488 raqNi~I~L~~lk~s~eeI~~aI~~~d~--L~~e~L~~Llk~~Pt~eE~~~L~~~~gd~~~L~~aEqFl~~-l~~Ip~~~ 564 (876)
+.||++|+|+.+++..++++.||.+++. +..++|+.|.++.|+.+|..+++.|.++...|+..|+|+.+ +..||+++
T Consensus 470 ~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~~~ip~~~ 549 (833)
T KOG1922|consen 470 RPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEELSGIPEFE 549 (833)
T ss_pred CccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHhhcchHHH
Confidence 9999999999999999999999998876 99999999999999999999999999988999999999887 66799999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhcccCCC
Q 039012 565 KRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTD 644 (876)
Q Consensus 565 ~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~Ks~D 644 (876)
.|+++++|+..|.+++..+...+.+++.||++++++..|.+++++||..|||||.|+.||+|+||+|++|.||.|+|+.+
T Consensus 550 ~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~~ 629 (833)
T KOG1922|consen 550 ERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSSD 629 (833)
T ss_pred HHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHHhhccHH
Q 039012 645 GKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVIDAD 724 (876)
Q Consensus 645 ~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kAA~vd~d 724 (876)
+++++|||++.++++.+|.+... ..+.|+.+|+++|.+|..||.+|++|++||++
T Consensus 630 ~~~~~l~~~~~e~~~~~~~r~~~-------------------------~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~ 684 (833)
T KOG1922|consen 630 GKTTLLHFVVPEVVRSEGKRSVI-------------------------DVEKSRRLGLPSLLKFLSDLSNVESAAKIDLE 684 (833)
T ss_pred ccchhhhhhHHHHHHhhccccch-------------------------hhhhhhhccchhhhcccchhcccchhhccCHH
Confidence 99999999999999988764211 35688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-Hhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCc-ccc
Q 039012 725 SVTATVSKLSTSLTKTKAFLD-TEMKN-KDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSG-KDE 801 (876)
Q Consensus 725 ~L~~~v~~L~~~L~~~k~~l~-~~~k~-~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~-k~e 801 (876)
.+..++.+|.+++.++++.+. ..... ....+.|...|..|+..|+.++..+..++++++.+++.+++|||+++. +..
T Consensus 685 ~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~ 764 (833)
T KOG1922|consen 685 VLAEECSDLKKGLEKVKRELPTASKNESLPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEIT 764 (833)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCC
Confidence 999999999999999999885 33222 336789999999999999999999999999999999999999999995 556
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCcCCCCCCchhhhhhchhhhcccCCCCCC
Q 039012 802 GLRLFTIVRDFLIMLDKSCKQVKITTKPSRTSRKETLTSSPSRENRQPSSDMRQKLFPAIEDRRMDFSSS 871 (876)
Q Consensus 802 ~~~fF~iv~dFl~~f~ka~kEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 871 (876)
..++|.++++|+.++++||+|++..++++++. .....+....-..+.+..++.+..+|..++.++
T Consensus 765 ~~~~f~~~r~fl~~~~~~~~e~~~~~~k~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (833)
T KOG1922|consen 765 PEQVFSILRDFLRTFDKAHEENKKAEEKEKTY-----EAEEKRANKEAELEELKNISQAVSKRTSDSESS 829 (833)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----ccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999998732222 111112223334566667777777777655444
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2e-51 Score=469.31 Aligned_cols=370 Identities=24% Similarity=0.348 Sum_probs=321.7
Q ss_pred ccccccccCcccccccccccCCCCcccccccccCcc--ccchHHHHhhhccCCCCCccccCCCCCCCCCcccccccccCC
Q 039012 408 GESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSF--QFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQIID 485 (876)
Q Consensus 408 ~~s~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s~--~lD~e~lE~lF~~k~~~~~k~~~kk~~s~s~~~~~~~vslLD 485 (876)
......+.++..++|..+..+++++|+++++.+..+ .+|++++|+.|..-......-...+..+....+..++++++|
T Consensus 362 k~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~qk~tLle 441 (830)
T KOG1923|consen 362 KKPTPTKTKSPSLNWLALKPIQVKGTVFHELNDEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQKRTLLE 441 (830)
T ss_pred cCCCcccccCCCccccccCccccccchhhhhhHHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhhhhhHHH
Confidence 344556888999999999999999999999888765 479999999997722111100000000123345578899999
Q ss_pred hhHHHHHHHHHhhcCCCHHHHHHHHhhCC--CCCHHHHHHHHhcCCChHHHHHhhcCCCC---CCCCChHHHHHHHhcCc
Q 039012 486 TRKAQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTLLKMAPTTDEELKLRLFPGD---ISQLGPAERFLKTLVDI 560 (876)
Q Consensus 486 ~KraqNi~I~L~~lk~s~eeI~~aI~~~d--~L~~e~L~~Llk~~Pt~eE~~~L~~~~gd---~~~L~~aEqFl~~l~~I 560 (876)
.+|++|++|.++ +++..++|+.||+..| .|+.+.++.|.+++||++|...+++|..+ ...|++.++|+..+..|
T Consensus 442 ~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml~lskI 520 (830)
T KOG1923|consen 442 QRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFMLSLSKI 520 (830)
T ss_pred HHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhhhhhhh
Confidence 999999999999 9999999999999766 69999999999999999999999988643 56799999999999999
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhcc
Q 039012 561 PFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADV 640 (876)
Q Consensus 561 p~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~ 640 (876)
.++.+|+..|-|+.+|.+.+..+.+++..+..|+..+++|++|+.+|++||++|||||.+. ||.++||+|.+|.-|.++
T Consensus 521 Erle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~k-Rg~ayGFklqslD~ll~t 599 (830)
T KOG1923|consen 521 ERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSSK-RGAAYGFKLQSLDSLLDT 599 (830)
T ss_pred hhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCcc-cccccceeccccHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999987 799999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHHhh
Q 039012 641 KGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAV 720 (876)
Q Consensus 641 Ks~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kAA~ 720 (876)
|++|.++|||||++-.|. +.|. .+..|.+||..|.+|+.
T Consensus 600 kStDr~~tLlh~iv~~i~------------------------------------eklp-----~l~~F~~el~~~eKa~a 638 (830)
T KOG1923|consen 600 KSTDRSMTLLHYIVLTIA------------------------------------EKLP-----ALQLFFSELDFVEKATA 638 (830)
T ss_pred cCCccceeeeehhhHHHH------------------------------------HhhH-----HHHhhHHHhhccchhhh
Confidence 999999999999997652 2222 35678899999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccc
Q 039012 721 IDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKD 800 (876)
Q Consensus 721 vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k~ 800 (876)
++++.+..||.+|..|+..++++.+... .+ ..|+.|++.++.+++.|++..+.+.+.++.+++|||++++..
T Consensus 639 v~lesV~~Dv~eL~~g~~l~~kE~e~~~-----~~---~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk~t 710 (830)
T KOG1923|consen 639 VQLESVLADVKELNAGMTLAEKETEREG-----LD---VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPKTT 710 (830)
T ss_pred hhhhccchhHHHHHhHHHHHHHHHhhhc-----cc---hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCCCC
Confidence 9999999999999999999887654321 11 689999999999999999999999999999999999999888
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012 801 EGLRLFTIVRDFLIMLDKSCKQVKITTK 828 (876)
Q Consensus 801 e~~~fF~iv~dFl~~f~ka~kEv~~~~~ 828 (876)
.+.-||..|..|..+|.++..|++.+.+
T Consensus 711 ppt~ff~~f~~F~~~~k~~~~ene~k~~ 738 (830)
T KOG1923|consen 711 PPTVFFQLFVRFVRAYKMARQENEQKKK 738 (830)
T ss_pred CCCccHHHHHHHHHHHHhhhhhhhhhhh
Confidence 8899999999999999999988877655
No 6
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=8.6e-39 Score=349.62 Aligned_cols=363 Identities=22% Similarity=0.309 Sum_probs=300.6
Q ss_pred cccccCcccccccccccC--------CCCcccccccccCccccchHHHHhhhccCCCCCccccCCCCCCCCCcccccccc
Q 039012 411 GAAKTKLKPFFWDKVLAS--------PDHAMVWHEISSGSFQFNEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQ 482 (876)
Q Consensus 411 ~~pk~KLK~l~W~KI~~~--------~~~~TIW~~i~~~s~~lD~e~lE~lF~~k~~~~~k~~~kk~~s~s~~~~~~~vs 482 (876)
...+.++-++||..+.-. .-.+|+|+.++..+ +|...||.||..+..... ..|| ..+.+.+..+
T Consensus 278 ~~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~~--~D~~r~~~LFEsr~~~~~--P~KK----~~E~r~~~~t 349 (817)
T KOG1925|consen 278 LPTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPVS--VDTARLEHLFESRAKEVL--PSKK----AGEGRRTMTT 349 (817)
T ss_pred ccccCceeEEEeecceecCCCCCccccccchhhhccCcce--ecHHHHHHHHHHhhhhhc--cchh----hcccceeeee
Confidence 335678889999887532 24689999998754 799999999977642210 1111 2233457889
Q ss_pred cCChhHHHHHHHHHhhcCCCHHHHHHHHhhCCC--CCHHHHHHHHhcCCChHHHHHhhcC--CCCCCCCChHHHHHHHhc
Q 039012 483 IIDTRKAQNLSIILRALNLTSEEVVDALEEGNE--LPLELLQTLLKMAPTTDEELKLRLF--PGDISQLGPAERFLKTLV 558 (876)
Q Consensus 483 lLD~KraqNi~I~L~~lk~s~eeI~~aI~~~d~--L~~e~L~~Llk~~Pt~eE~~~L~~~--~gd~~~L~~aEqFl~~l~ 558 (876)
|||.||.|.|.|-|.+|. +..-|..||++.|. ++.|.|+.|++|+||++|++++... ....-.|+.||||++.|.
T Consensus 350 VL~~KRt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLS 428 (817)
T KOG1925|consen 350 VLDPKRTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLS 428 (817)
T ss_pred ecCcccccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHh
Confidence 999999999999999985 56677889988774 7889999999999999999988643 233468999999999999
Q ss_pred CcccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhh
Q 039012 559 DIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLA 638 (876)
Q Consensus 559 ~Ip~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~ 638 (876)
.|+.+.+||+.|.|+..|+..-.+|.+-|-.+..|.++|.+++.|+-+|..+|+||||||+.. ++||.|+.|.|..
T Consensus 429 sI~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT~----~KgFeLsYLeKvs 504 (817)
T KOG1925|consen 429 SIGGLAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGTQ----SKGFELSYLEKVS 504 (817)
T ss_pred hhHHHHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCcc----ccceehHhhhhch
Confidence 999999999999999999999999999999999999999999999999999999999999865 8899999999999
Q ss_pred cccCCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHH
Q 039012 639 DVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKA 718 (876)
Q Consensus 639 d~Ks~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kA 718 (876)
++|++-.|.||||+|+..++.. || | -+.|-+|+..|-+.
T Consensus 505 EVKDtV~KqsLlhHlc~~vVE~--------------Fp-------e--------------------ssDLYSEiGA~tRS 543 (817)
T KOG1925|consen 505 EVKDTVRKQSLLHHLCSLVVET--------------FP-------E--------------------SSDLYSEIGALTRS 543 (817)
T ss_pred hhcchHHHHHHHHHHHHHHHHh--------------CC-------c--------------------chhHHHHhHhhhhh
Confidence 9999999999999999877542 22 1 12345688899999
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCc
Q 039012 719 AVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSG 798 (876)
Q Consensus 719 A~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~ 798 (876)
|+||+++|...+..|++.++..++-|.. +...+-..-....|..|+.++.++|..|+..+.++.+.|.+.+-|||-...
T Consensus 544 AkVDf~qL~DNL~qlErrCKaSWe~L~~-Iakhe~~p~l~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~ 622 (817)
T KOG1925|consen 544 AKVDFEQLTDNLGQLERRCKASWESLRS-IAKHELAPALRARLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQ 622 (817)
T ss_pred hhccHHHHHHHHHHHHHHhhHHHHHHHH-HHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 9999999999999999999888877644 232333456788999999999999999999999999999999999986543
Q ss_pred ---ccchhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012 799 ---KDEGLRLFTIVRDFLIMLDKSCKQVKITTK 828 (876)
Q Consensus 799 ---k~e~~~fF~iv~dFl~~f~ka~kEv~~~~~ 828 (876)
......||.+|++|...|......|-+.++
T Consensus 623 aIrev~iN~fc~~~~EFaLEYRTTRervLQQ~q 655 (817)
T KOG1925|consen 623 AIREVRINQFCHTLREFALEYRTTRERVLQQQQ 655 (817)
T ss_pred hhhhcCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 234689999999999999877776655544
No 7
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=3.9e-08 Score=114.89 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhcccCCCCCccHHHHHHHHHHHhhhhh
Q 039012 586 SFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIR 664 (876)
Q Consensus 586 ~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~Ks~D~k~TLLhflv~~Iir~e~~~ 664 (876)
.|..+..-.+.|...+.|..+|.-|-.+ ..|-.+.=|||..=..+.++|- .+.-..-.+++|-.+++.+
T Consensus 750 ~L~e~Kaeye~l~e~EQF~vvm~~vkrL-------~pRL~~ilFKl~fse~vnniKP---~i~avt~ACEE~rkSesFs 818 (1102)
T KOG1924|consen 750 KLSELKAEYEDLPEPEQFVVVMSQVKRL-------RPRLSAILFKLTFSEQVNNIKP---DIVAVTAACEELRKSESFS 818 (1102)
T ss_pred HHHHHHHhccCCCCHHHHhHHHhhcccc-------ChhHHHHHHHhhHHHHHhhcCh---HHHHHHHHHHHHHhhhhHH
Confidence 3444455566677777776655554322 2344567788887777777775 2333445556666666544
No 8
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=98.00 E-value=2.8e-05 Score=90.22 Aligned_cols=124 Identities=28% Similarity=0.359 Sum_probs=96.7
Q ss_pred hhhhhccchhhHHHH----HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---chhhHHHHHHHHHHHHHHH
Q 039012 701 GLQVVSGLSTELEDV----KKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEK---TEFYNVVTKFLERAETDIA 773 (876)
Q Consensus 701 gL~~V~~Ls~EL~~V----~kAA~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~ed---d~F~e~m~~Fle~Ae~ei~ 773 (876)
+|+...+..+++..+ ..++..+++.|...+.++...+.++.+++..+.+....+ ..|.+.|..|...+++.+.
T Consensus 300 ~l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~ 379 (432)
T smart00498 300 GLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIK 379 (432)
T ss_pred hcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555 888999999999999999999999988876554432212 3455667777777888888
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCc--ccchhhhhHHHHHHHHHHHHHHHHHH
Q 039012 774 WLLEEEKRIMALVKSTADYFHGNSG--KDEGLRLFTIVRDFLIMLDKSCKQVK 824 (876)
Q Consensus 774 ~L~e~~k~~~~l~k~~~~YFged~~--k~e~~~fF~iv~dFl~~f~ka~kEv~ 824 (876)
.+.+++++.+..++++++||++... +..+..+|.+++||+.++|++|++++
T Consensus 380 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~ 432 (432)
T smart00498 380 KEEEEEERRKQLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEELG 432 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhhC
Confidence 8888999999999999999998653 34567899999999999999999873
No 9
>PHA03247 large tegument protein UL36; Provisional
Probab=97.49 E-value=0.0092 Score=78.98 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=6.1
Q ss_pred hhhhcccccc
Q 039012 56 TFVHCRNQLV 65 (876)
Q Consensus 56 ~~~~~~~~~~ 65 (876)
.||+-..|+-
T Consensus 2535 ~w~~glEe~a 2544 (3151)
T PHA03247 2535 TWIRGLEELA 2544 (3151)
T ss_pred hhhhhhhhhh
Confidence 4777666644
No 10
>PHA03247 large tegument protein UL36; Provisional
Probab=97.37 E-value=0.01 Score=78.57 Aligned_cols=6 Identities=50% Similarity=0.722 Sum_probs=2.2
Q ss_pred HHHHHH
Q 039012 590 LEVACD 595 (876)
Q Consensus 590 l~~A~~ 595 (876)
|.+||.
T Consensus 3114 Li~ACr 3119 (3151)
T PHA03247 3114 LIEACR 3119 (3151)
T ss_pred HHHHHH
Confidence 333333
No 11
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.36 E-value=0.014 Score=67.05 Aligned_cols=16 Identities=19% Similarity=-0.012 Sum_probs=7.9
Q ss_pred ccccccCccccccccc
Q 039012 410 SGAAKTKLKPFFWDKV 425 (876)
Q Consensus 410 s~~pk~KLK~l~W~KI 425 (876)
+..+...+|.+.-+.+
T Consensus 474 ~i~~G~ql~~ve~t~~ 489 (569)
T KOG3671|consen 474 AIAPGGQLKKVETTAL 489 (569)
T ss_pred ccCccccccceeeccC
Confidence 4444555555544444
No 12
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.73 E-value=0.036 Score=63.83 Aligned_cols=9 Identities=22% Similarity=0.191 Sum_probs=4.4
Q ss_pred HHHHHhcch
Q 039012 16 ICALATANI 24 (876)
Q Consensus 16 ~~~~~~~~~ 24 (876)
+++.||+-|
T Consensus 39 ~l~aAVVqL 47 (569)
T KOG3671|consen 39 TLAAAVVQL 47 (569)
T ss_pred hHHHHHHHH
Confidence 344555555
No 13
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.71 E-value=0.048 Score=65.66 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=22.9
Q ss_pred HHHHHhhccHHHHHHHHHHHhhccccCCCCC
Q 039012 592 VACDKLRSSRLFLKLLEAVLKTGNRMNDGTY 622 (876)
Q Consensus 592 ~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~ 622 (876)
...++.+.-+...++.-.+..|+|.=-.|..
T Consensus 555 ~s~k~sr~lr~VleiILA~gNymns~kRg~a 585 (830)
T KOG1923|consen 555 KSLKESRKLRPVLEIILAFGNYMNSSKRGAA 585 (830)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCcccccc
Confidence 3445666677778888889999998777753
No 14
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=94.79 E-value=11 Score=47.76 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCC
Q 039012 582 SIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMND 619 (876)
Q Consensus 582 ~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~ 619 (876)
.+...+..++.+....+....+..+.+++...|++++.
T Consensus 615 ~l~~l~kl~d~ks~~~~~~~l~~~~~e~~~~~~~r~~~ 652 (833)
T KOG1922|consen 615 KLDALLKLSDVKSSDGKTTLLHFVVPEVVRSEGKRSVI 652 (833)
T ss_pred hHHHHhhhhhhhcccccchhhhhhHHHHHHhhccccch
Confidence 34444444444455555567788888899999998886
No 15
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=94.14 E-value=0.16 Score=52.07 Aligned_cols=9 Identities=22% Similarity=0.748 Sum_probs=3.6
Q ss_pred HHHHHHhhh
Q 039012 252 ALVALLFLC 260 (876)
Q Consensus 252 ~~a~~~fl~ 260 (876)
|++.++|+|
T Consensus 92 v~~Iv~~~C 100 (179)
T PF13908_consen 92 VVLIVCFCC 100 (179)
T ss_pred HHhHhhhee
Confidence 333334444
No 16
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=92.59 E-value=0.16 Score=66.62 Aligned_cols=8 Identities=25% Similarity=0.725 Sum_probs=4.3
Q ss_pred cccccccc
Q 039012 432 AMVWHEIS 439 (876)
Q Consensus 432 ~TIW~~i~ 439 (876)
..+|..+.
T Consensus 1762 ~s~W~Ri~ 1769 (2039)
T PRK15319 1762 GSVWARFK 1769 (2039)
T ss_pred CCeEEEEe
Confidence 35666544
No 17
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=87.75 E-value=0.1 Score=51.94 Aligned_cols=34 Identities=26% Similarity=0.606 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHH--HHHHHHHHhhhhccCCCCcC
Q 039012 236 HKEIIIAVVATAVT--TFALVALLFLCCLKSRSKRI 269 (876)
Q Consensus 236 ~ktv~iav~~ta~~--t~~~a~~~fl~c~~~r~~~~ 269 (876)
+++++|||+++..+ .+++++|+|+||.|.||+.+
T Consensus 47 nknIVIGvVVGVGg~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred CccEEEEEEecccHHHHHHHHHhheeEEEecccCcc
Confidence 45677777766433 44455666667766655554
No 18
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=85.77 E-value=64 Score=37.33 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=6.0
Q ss_pred CCHHHHHHHHh
Q 039012 501 LTSEEVVDALE 511 (876)
Q Consensus 501 ~s~eeI~~aI~ 511 (876)
++.++...+++
T Consensus 470 vtkDDaY~~FM 480 (487)
T KOG4672|consen 470 VTKDDAYNAFM 480 (487)
T ss_pred CcchHHHHHHH
Confidence 35556555554
No 19
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=82.27 E-value=4.9 Score=41.23 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhhhccC
Q 039012 246 TAVTTFALVALLFLCCLKS 264 (876)
Q Consensus 246 ta~~t~~~a~~~fl~c~~~ 264 (876)
.+++++|++++-|.||+.+
T Consensus 89 i~Iv~~Iv~~~Cc~c~~~K 107 (179)
T PF13908_consen 89 IAIVVLIVCFCCCCCCLYK 107 (179)
T ss_pred HHHHHhHhhheeccccccc
Confidence 3467788888888888543
No 20
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=81.16 E-value=1.1 Score=43.41 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 039012 237 KEIIIAVVATAVTTFALVALLFLCCLKSRS 266 (876)
Q Consensus 237 ktv~iav~~ta~~t~~~a~~~fl~c~~~r~ 266 (876)
..+++||+++.+. ++ +|++|||+|.||
T Consensus 67 ~~Ii~gv~aGvIg--~I-lli~y~irR~~K 93 (122)
T PF01102_consen 67 IGIIFGVMAGVIG--II-LLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHH--HH-HHHHHHHHHHS-
T ss_pred eehhHHHHHHHHH--HH-HHHHHHHHHHhc
Confidence 4555555554432 22 356666666554
No 21
>PRK15313 autotransport protein MisL; Provisional
Probab=80.87 E-value=3.7 Score=51.64 Aligned_cols=13 Identities=15% Similarity=-0.005 Sum_probs=5.4
Q ss_pred ceeccchhhhhcc
Q 039012 628 AFKLDTLLKLADV 640 (876)
Q Consensus 628 GFkL~SL~KL~d~ 640 (876)
||-+|+..+..-.
T Consensus 771 G~YVDswlQynwF 783 (955)
T PRK15313 771 GAYVDTWMLYNWF 783 (955)
T ss_pred cEEEeeeeeeeee
Confidence 4444444444333
No 22
>PRK15313 autotransport protein MisL; Provisional
Probab=80.81 E-value=3.3 Score=51.99 Aligned_cols=7 Identities=14% Similarity=0.548 Sum_probs=3.5
Q ss_pred ccccccc
Q 039012 432 AMVWHEI 438 (876)
Q Consensus 432 ~TIW~~i 438 (876)
..+|..+
T Consensus 677 ~s~WlR~ 683 (955)
T PRK15313 677 TSLWMRN 683 (955)
T ss_pred CceEEEe
Confidence 3456543
No 23
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=79.76 E-value=4.3 Score=47.38 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=16.2
Q ss_pred cccccccccCccccccccccc
Q 039012 407 EGESGAAKTKLKPFFWDKVLA 427 (876)
Q Consensus 407 ~~~s~~pk~KLK~l~W~KI~~ 427 (876)
.+....+..+-+...|..++.
T Consensus 295 ~~~~Gv~~~r~~~t~W~s~D~ 315 (817)
T KOG1925|consen 295 AGGHGVSASRPCATLWASLDP 315 (817)
T ss_pred cCCCCCccccccchhhhccCc
Confidence 455666778889999999964
No 24
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=78.89 E-value=1.4 Score=55.30 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.2
Q ss_pred HHHHHH
Q 039012 601 RLFLKL 606 (876)
Q Consensus 601 ~~l~~l 606 (876)
+.++.|
T Consensus 636 Kd~Khl 641 (2365)
T COG5178 636 KDWKHL 641 (2365)
T ss_pred hhHHHH
Confidence 333333
No 25
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=76.69 E-value=1.8 Score=54.46 Aligned_cols=7 Identities=29% Similarity=0.923 Sum_probs=3.1
Q ss_pred ccccccc
Q 039012 433 MVWHEIS 439 (876)
Q Consensus 433 TIW~~i~ 439 (876)
+.|++..
T Consensus 131 ~pWe~~~ 137 (2365)
T COG5178 131 SPWEDVS 137 (2365)
T ss_pred ChHhhhh
Confidence 3455443
No 26
>PHA03291 envelope glycoprotein I; Provisional
Probab=75.34 E-value=18 Score=40.89 Aligned_cols=31 Identities=19% Similarity=0.006 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcchhhhhccCCccccCCCCCC
Q 039012 11 VLVILICALATANITECRKRVPLTFDDGDGGA 42 (876)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (876)
|||++-.++.+..+ =||+.+-.+..|...+.
T Consensus 7 ~l~~~~~~~~atgl-VyRGptVSL~~dSs~~~ 37 (401)
T PHA03291 7 FLLALGLWACAAGV-VVRGPTISLVSDSLLAA 37 (401)
T ss_pred hHHHHHhhhheeeE-EEeCCeeEEEEcCccce
Confidence 34444444444555 67887777666665554
No 27
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=75.30 E-value=0.92 Score=50.21 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=0.0
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 039012 232 DDVRHKEIIIAVVATAVTTFALVALLFLCCLKSR 265 (876)
Q Consensus 232 ~~~~~ktv~iav~~ta~~t~~~a~~~fl~c~~~r 265 (876)
.+.+..++|+||++.++. ++|+++.+||.|+|
T Consensus 142 ~d~yL~T~IpaVVI~~iL--LIA~iIa~icyrrk 173 (290)
T PF05454_consen 142 SDDYLHTFIPAVVIAAIL--LIAGIIACICYRRK 173 (290)
T ss_dssp ----------------------------------
T ss_pred ccchHHHHHHHHHHHHHH--HHHHHHHHHhhhhh
Confidence 456678888999985553 44555555555543
No 28
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=74.75 E-value=23 Score=40.94 Aligned_cols=6 Identities=50% Similarity=0.601 Sum_probs=2.5
Q ss_pred HHHHhh
Q 039012 493 SIILRA 498 (876)
Q Consensus 493 ~I~L~~ 498 (876)
||-|++
T Consensus 466 GiqLrK 471 (518)
T KOG1830|consen 466 GIQLRK 471 (518)
T ss_pred cchhHH
Confidence 444443
No 29
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=72.68 E-value=3.2e+02 Score=36.04 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039012 727 TATVSKLSTSLTKTKAFLDTEM 748 (876)
Q Consensus 727 ~~~v~~L~~~L~~~k~~l~~~~ 748 (876)
...+..|...++.+.+.+++.+
T Consensus 1660 ~q~~~~lq~~~~~~~~l~~~r~ 1681 (1758)
T KOG0994|consen 1660 EQGLEILQKYYELVDRLLEKRM 1681 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566666666666665443
No 30
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=72.13 E-value=1.6e+02 Score=38.58 Aligned_cols=20 Identities=5% Similarity=-0.017 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhccccCCCCC
Q 039012 603 FLKLLEAVLKTGNRMNDGTY 622 (876)
Q Consensus 603 l~~lL~~VL~iGN~mN~gt~ 622 (876)
.+.+=.+|-.++||++..+.
T Consensus 1470 ~~el~~Li~~v~~Flt~~~a 1489 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFLTQPDA 1489 (1758)
T ss_pred HHHHHHHHHHHHHHhcCCCC
Confidence 34444677889999998763
No 31
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=71.58 E-value=24 Score=39.81 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039012 238 EIIIAVVATAVTTFALVALLFL 259 (876)
Q Consensus 238 tv~iav~~ta~~t~~~a~~~fl 259 (876)
-++.||..+.+.-| |.+.||
T Consensus 96 DL~~A~~S~G~~~~--~dmKFF 115 (498)
T KOG4849|consen 96 DLLKALQSTGLAQF--ADMKFF 115 (498)
T ss_pred HHHHHHHhhhHHHH--hhhhhh
Confidence 35566666666533 344554
No 32
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=69.50 E-value=27 Score=40.34 Aligned_cols=9 Identities=22% Similarity=0.360 Sum_probs=5.4
Q ss_pred HHHHHHhhc
Q 039012 491 NLSIILRAL 499 (876)
Q Consensus 491 Ni~I~L~~l 499 (876)
+..|++++.
T Consensus 489 vatiLsRRi 497 (518)
T KOG1830|consen 489 VATILSRRI 497 (518)
T ss_pred HHHHHHHHH
Confidence 556666654
No 33
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=69.48 E-value=1.7e+02 Score=33.27 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=10.8
Q ss_pred cccchHHHHhhhccCC
Q 039012 443 FQFNEEMIESLFGYKP 458 (876)
Q Consensus 443 ~~lD~e~lE~lF~~k~ 458 (876)
+.+.+.+||++...+.
T Consensus 355 ~plSeAEFEdiM~RNr 370 (498)
T KOG4849|consen 355 FPLSEAEFEDIMTRNR 370 (498)
T ss_pred ccchHHHHHHHHhhcc
Confidence 3466778888876554
No 34
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=69.42 E-value=3.8 Score=37.32 Aligned_cols=25 Identities=28% Similarity=0.659 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhhccCCCCcCCCCCC
Q 039012 250 TFALVALLFLCCLKSRSKRIDPVKG 274 (876)
Q Consensus 250 t~~~a~~~fl~c~~~r~~~~~~~~~ 274 (876)
.||++.++.|.||++|++.+.|.|+
T Consensus 43 iFil~VilwfvCC~kRkrsRrPIYr 67 (94)
T PF05393_consen 43 IFILLVILWFVCCKKRKRSRRPIYR 67 (94)
T ss_pred HHHHHHHHHHHHHHHhhhccCCccc
Confidence 3455556666777777766666554
No 35
>PRK09752 adhesin; Provisional
Probab=68.99 E-value=4.4 Score=52.09 Aligned_cols=6 Identities=0% Similarity=-0.042 Sum_probs=3.1
Q ss_pred cccccc
Q 039012 433 MVWHEI 438 (876)
Q Consensus 433 TIW~~i 438 (876)
++|..+
T Consensus 986 s~W~R~ 991 (1250)
T PRK09752 986 TLNLRV 991 (1250)
T ss_pred ceEEEe
Confidence 456543
No 36
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=67.93 E-value=9.1 Score=38.06 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=19.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 039012 234 VRHKEIIIAVVATAVTTFALVALLFLCCLK 263 (876)
Q Consensus 234 ~~~ktv~iav~~ta~~t~~~a~~~fl~c~~ 263 (876)
....++|.|++.+.++.+.++|.+|+|+|.
T Consensus 57 ~lsgtAIaGIVfgiVfimgvva~i~icvCm 86 (155)
T PF10873_consen 57 VLSGTAIAGIVFGIVFIMGVVAGIAICVCM 86 (155)
T ss_pred ccccceeeeeehhhHHHHHHHHHHHHHHhh
Confidence 345677777777777666666666666553
No 37
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=67.74 E-value=9.2 Score=29.66 Aligned_cols=9 Identities=56% Similarity=0.715 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 039012 238 EIIIAVVAT 246 (876)
Q Consensus 238 tv~iav~~t 246 (876)
.++.||+++
T Consensus 7 aIIv~V~vg 15 (38)
T PF02439_consen 7 AIIVAVVVG 15 (38)
T ss_pred hHHHHHHHH
Confidence 344444443
No 38
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.89 E-value=20 Score=43.67 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=4.2
Q ss_pred ccCCCCCCC
Q 039012 35 FDDGDGGAG 43 (876)
Q Consensus 35 ~~~~~~~~~ 43 (876)
++-+-.|+|
T Consensus 42 Lf~Gp~G~G 50 (585)
T PRK14950 42 LFTGPRGVG 50 (585)
T ss_pred EEECCCCCC
Confidence 344445544
No 39
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=64.32 E-value=2.2 Score=50.05 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 039012 237 KEIIIAVVATAVTTFALVALLFLCCLKSRS 266 (876)
Q Consensus 237 ktv~iav~~ta~~t~~~a~~~fl~c~~~r~ 266 (876)
..+++++++++++.+++++++|+||.+.|+
T Consensus 351 ~~~~l~vVlgvavlivVv~viv~vc~~~rr 380 (439)
T PF02480_consen 351 GAALLGVVLGVAVLIVVVGVIVWVCLRCRR 380 (439)
T ss_dssp ------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHhheeeeehh
Confidence 344555555555555565666666655443
No 40
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=62.79 E-value=9.1 Score=38.19 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=21.3
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHhh
Q 039012 232 DDVRHKEIIIAVVATAVTTFALVALLFL 259 (876)
Q Consensus 232 ~~~~~ktv~iav~~ta~~t~~~a~~~fl 259 (876)
+.+++.++++|+.+|++++++++. |||
T Consensus 114 ~~gY~nklilaisvtvv~~iliii-~CL 140 (154)
T PF14914_consen 114 GYGYNNKLILAISVTVVVMILIII-FCL 140 (154)
T ss_pred cccccchhHHHHHHHHHHHHHHHH-HHH
Confidence 567888999999999988877653 555
No 41
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=60.94 E-value=17 Score=42.26 Aligned_cols=16 Identities=25% Similarity=0.663 Sum_probs=10.2
Q ss_pred hhHHHHHHhhhc-cccc
Q 039012 94 TKETFLDCLKKS-LHFH 109 (876)
Q Consensus 94 ~~~~~~~~~~~~-~~~~ 109 (876)
-++.+|+|.=.+ .-|+
T Consensus 44 d~~vVlnC~I~kGlkYn 60 (409)
T KOG4590|consen 44 DQQVVLNCLILKGLKYN 60 (409)
T ss_pred CcccccccccccCccee
Confidence 367889997655 4443
No 42
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=60.87 E-value=9.4 Score=33.94 Aligned_cols=24 Identities=21% Similarity=0.587 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 039012 240 IIAVVATAVTTFALVALLFLCCLK 263 (876)
Q Consensus 240 ~iav~~ta~~t~~~a~~~fl~c~~ 263 (876)
++++++++++.+++..++++||.|
T Consensus 2 ii~~~~~g~~~ll~~v~~~~~~~r 25 (75)
T PF14575_consen 2 IIASIIVGVLLLLVLVIIVIVCFR 25 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred EEehHHHHHHHHHHhheeEEEEEe
Confidence 455555555444444445555543
No 43
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=58.25 E-value=3.9 Score=35.24 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 039012 238 EIIIAVVATAVTTFALVALLF 258 (876)
Q Consensus 238 tv~iav~~ta~~t~~~a~~~f 258 (876)
.++.||++++++.+++|.++.
T Consensus 9 ~vlaavIaG~Vvgll~ailLI 29 (64)
T PF01034_consen 9 EVLAAVIAGGVVGLLFAILLI 29 (64)
T ss_dssp ---------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444333
No 44
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=57.73 E-value=1.4e+02 Score=29.88 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=5.3
Q ss_pred cchHHHHHHHHHHH
Q 039012 235 RHKEIIIAVVATAV 248 (876)
Q Consensus 235 ~~ktv~iav~~ta~ 248 (876)
+.+.+..+.+++|+
T Consensus 5 RsR~la~~aLaAAG 18 (137)
T PF12868_consen 5 RSRDLAEAALAAAG 18 (137)
T ss_pred hHHHHhHHHHHHHH
Confidence 34443333333333
No 45
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=57.07 E-value=3.8e+02 Score=31.40 Aligned_cols=25 Identities=36% Similarity=0.328 Sum_probs=15.3
Q ss_pred hHHHHhhhhhhhhccchhhHHHHHHH
Q 039012 693 SAEKYSILGLQVVSGLSTELEDVKKA 718 (876)
Q Consensus 693 ~~e~y~~lgL~~V~~Ls~EL~~V~kA 718 (876)
+.++|.. .|++|.+-..||..|-+-
T Consensus 235 ~~~e~~e-~l~Vl~~Da~El~~V~~e 259 (412)
T PF04108_consen 235 SEEERQE-MLEVLENDAQELPDVVKE 259 (412)
T ss_pred ChHHHHH-HHHHHHcchhhHHHHHHH
Confidence 3344443 466777777777777653
No 46
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.21 E-value=3.2e+02 Score=29.37 Aligned_cols=70 Identities=16% Similarity=0.040 Sum_probs=33.4
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCC
Q 039012 550 AERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDG 620 (876)
Q Consensus 550 aEqFl~~l~~Ip~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~g 620 (876)
+|-++..++.+|. ..|..-++|+..+..-....-...-.+.-+|-.+.--...+++-...=..|+..|..
T Consensus 11 ~Eial~~iL~Lpi-p~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~ 80 (216)
T KOG1962|consen 11 AEIALFLILLLPI-PPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPT 80 (216)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 5666666666666 556666666555444332222222222233333333344444444444445555443
No 47
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.82 E-value=88 Score=36.82 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=11.3
Q ss_pred HHHHhcCCc-hhhHHHHHHh
Q 039012 84 SEAINDLPP-QTKETFLDCL 102 (876)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~ 102 (876)
..++..||| +.-+++|.|-
T Consensus 186 e~ll~elPpv~~~~i~l~e~ 205 (483)
T KOG2236|consen 186 EHLLDELPPVEPEEITLEEK 205 (483)
T ss_pred chhhhcCCCCCccceeecCC
Confidence 456777777 5555555553
No 48
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=52.80 E-value=2e+02 Score=31.77 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=18.3
Q ss_pred cceeccchhhhhcccCC--------CCCccHHHHHHHHH
Q 039012 627 QAFKLDTLLKLADVKGT--------DGKTTLLHFVVQEI 657 (876)
Q Consensus 627 ~GFkL~SL~KL~d~Ks~--------D~k~TLLhflv~~I 657 (876)
.+|+++.=.|+.|+|.. +.+.+|.+.|-+++
T Consensus 106 ~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~ 144 (267)
T PF10234_consen 106 SLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEV 144 (267)
T ss_pred chhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 45666665677777762 33445555555554
No 49
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=52.15 E-value=9.1 Score=46.33 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 039012 237 KEIIIAVVATAVTTFALVALLFLCCLKSRS 266 (876)
Q Consensus 237 ktv~iav~~ta~~t~~~a~~~fl~c~~~r~ 266 (876)
--+|+||++-.++.++++.++++||||+.|
T Consensus 269 lWII~gVlvPv~vV~~Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 269 LWIIAGVLVPVLVVLLIIIILYWKLCRKNK 298 (684)
T ss_pred eEEEehHhHHHHHHHHHHHHHHHHHhcccc
Confidence 334477766655555555556666655433
No 50
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=52.03 E-value=13 Score=43.16 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=14.0
Q ss_pred CCCCCCCChHHHHHHHhc
Q 039012 541 PGDISQLGPAERFLKTLV 558 (876)
Q Consensus 541 ~gd~~~L~~aEqFl~~l~ 558 (876)
+||..+..-+|||.....
T Consensus 451 dgDy~EfpvPEQfkt~~~ 468 (480)
T KOG2675|consen 451 DGDYVEFPVPEQFKTKFN 468 (480)
T ss_pred CCCcccccChHHHhhhcc
Confidence 478888999999976543
No 51
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=49.53 E-value=42 Score=41.70 Aligned_cols=6 Identities=50% Similarity=1.199 Sum_probs=2.3
Q ss_pred hhcchh
Q 039012 130 SWLNAP 135 (876)
Q Consensus 130 ~~~~~~ 135 (876)
+|++.|
T Consensus 480 ~~~~~P 485 (759)
T PF05518_consen 480 HWNNHP 485 (759)
T ss_pred HHhcCC
Confidence 333333
No 52
>PF15069 FAM163: FAM163 family
Probab=49.27 E-value=8.7 Score=38.18 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 039012 239 IIIAVVATAVTTFALVALLFLC 260 (876)
Q Consensus 239 v~iav~~ta~~t~~~a~~~fl~ 260 (876)
||.|...+.++.++|+++||+|
T Consensus 7 VItGgILAtVILLcIIaVLCYC 28 (143)
T PF15069_consen 7 VITGGILATVILLCIIAVLCYC 28 (143)
T ss_pred EEechHHHHHHHHHHHHHHHHH
Confidence 4556666677788888999998
No 53
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=46.40 E-value=89 Score=38.96 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=9.5
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 039012 235 RHKEIIIAVVATAVTTFALV 254 (876)
Q Consensus 235 ~~ktv~iav~~ta~~t~~~a 254 (876)
.++|+.+|-+..-+.=--++
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~ 439 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLA 439 (894)
T ss_pred eeeeeeeccccchhhHHHHH
Confidence 44555555554444333333
No 54
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=46.35 E-value=81 Score=39.33 Aligned_cols=7 Identities=14% Similarity=0.415 Sum_probs=2.9
Q ss_pred ccccccc
Q 039012 107 HFHVSSE 113 (876)
Q Consensus 107 ~~~~~~~ 113 (876)
+|++.+.
T Consensus 371 ~fg~~~~ 377 (759)
T PF05518_consen 371 IFGLGGD 377 (759)
T ss_pred HhccccC
Confidence 4444433
No 55
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=45.81 E-value=14 Score=42.18 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 039012 239 IIIAVVATAVTTFALVALLFLCCLKSRSK 267 (876)
Q Consensus 239 v~iav~~ta~~t~~~a~~~fl~c~~~r~~ 267 (876)
.+++|..++.+.+++++.+++|++|.|++
T Consensus 321 ~i~~vgLG~P~l~li~Ggl~v~~~r~r~~ 349 (350)
T PF15065_consen 321 MIMAVGLGVPLLLLILGGLYVCLRRRRKR 349 (350)
T ss_pred HHHHHHhhHHHHHHHHhhheEEEeccccC
Confidence 34556666777778888899988877653
No 56
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=45.75 E-value=1e+02 Score=30.11 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHH
Q 039012 726 VTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDI 772 (876)
Q Consensus 726 L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei 772 (876)
+..+|..|..+++++++.++..+...+....|.+.|+.+...--.+|
T Consensus 4 ~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDi 50 (121)
T PF03310_consen 4 IIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDI 50 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 34455555555555555554443333333446666666655544443
No 57
>PHA03378 EBNA-3B; Provisional
Probab=45.67 E-value=1.3e+02 Score=37.11 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=7.4
Q ss_pred chhhHHHHHHhhh
Q 039012 92 PQTKETFLDCLKK 104 (876)
Q Consensus 92 ~~~~~~~~~~~~~ 104 (876)
..+|+.|.+||..
T Consensus 294 ~~Ik~Wf~q~iGt 306 (991)
T PHA03378 294 THIREWFRQCTGR 306 (991)
T ss_pred HHHHHHHHHhcCC
Confidence 4556666666543
No 58
>PHA03378 EBNA-3B; Provisional
Probab=45.50 E-value=1.2e+02 Score=37.36 Aligned_cols=9 Identities=22% Similarity=0.349 Sum_probs=3.7
Q ss_pred cccchHHHH
Q 039012 4 KSSGYGIVL 12 (876)
Q Consensus 4 ~~~~~~~~~ 12 (876)
.++-|.||+
T Consensus 263 ~rSL~~IWi 271 (991)
T PHA03378 263 GNTLYAIWI 271 (991)
T ss_pred cccHHHHHh
Confidence 334444443
No 59
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.07 E-value=1.7e+02 Score=34.48 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=54.2
Q ss_pred HHHhhhhhhhhccchhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHh--h--hcccccchhhHHHHHHHHHHHH
Q 039012 695 EKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTE--M--KNKDEKTEFYNVVTKFLERAET 770 (876)
Q Consensus 695 e~y~~lgL~~V~~Ls~EL~~V~kAA~vd~d~L~~~v~~L~~~L~~~k~~l~~~--~--k~~~edd~F~e~m~~Fle~Ae~ 770 (876)
.+|-.+-++.+..+..++.++.++.++ +...++++...++++.+.++.. + .-....+-...+++.-.+.-++
T Consensus 353 k~~~e~~~~e~~~l~~~~~~~e~~kk~----~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~ 428 (493)
T KOG0804|consen 353 KQYYELLITEADSLKQESSDLEAEKKI----VERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKE 428 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344455566777777777777766543 3344455555555554443211 1 0112234455666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 039012 771 DIAWLLEEEKRIMALVKSTADYF 793 (876)
Q Consensus 771 ei~~L~e~~k~~~~l~k~~~~YF 793 (876)
.+....+....+.+++++++-|+
T Consensus 429 ~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHhHheeh
Confidence 66666666667777777777766
No 60
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=44.23 E-value=5.9e+02 Score=29.85 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-CcccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 039012 756 EFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGN-SGKDEGLRLFTIVRDFLIMLDKSCKQVKIT 826 (876)
Q Consensus 756 ~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged-~~k~e~~~fF~iv~dFl~~f~ka~kEv~~~ 826 (876)
.+...+-.-+..-+.++..+.+...+=+++.......+-|+ ....+..+.|.+|..=...++.+.+|+++.
T Consensus 192 ~~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~ 263 (412)
T PF04108_consen 192 PLMSTILKELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQER 263 (412)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHH
Confidence 45555555556666777666555444444444444444232 222233455555544444444444444444
No 61
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=42.95 E-value=2.2 Score=33.40 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 039012 238 EIIIAVVATAV 248 (876)
Q Consensus 238 tv~iav~~ta~ 248 (876)
++..||++-.+
T Consensus 12 aIa~~VvVPV~ 22 (40)
T PF08693_consen 12 AIAVGVVVPVG 22 (40)
T ss_pred EEEEEEEechH
Confidence 44444444333
No 62
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=41.30 E-value=1.4e+02 Score=35.11 Aligned_cols=58 Identities=16% Similarity=0.289 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 039012 723 ADSVTATVSKLSTSLTKTKAFLD-----------TEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEK 780 (876)
Q Consensus 723 ~d~L~~~v~~L~~~L~~~k~~l~-----------~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k 780 (876)
++.+..++....+.|++++++++ +++...-++..|....+.++.+.++++..+.+-+.
T Consensus 252 Le~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~ 320 (426)
T smart00806 252 LETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFD 320 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555543 23333445677888888888888888777665443
No 63
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=40.66 E-value=1.1e+02 Score=39.98 Aligned_cols=8 Identities=25% Similarity=0.837 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 039012 13 VILICALA 20 (876)
Q Consensus 13 ~~~~~~~~ 20 (876)
+.|||-.-
T Consensus 1341 laLl~dvm 1348 (1605)
T KOG0260|consen 1341 LALLCDVM 1348 (1605)
T ss_pred HHHHHHHH
Confidence 34445443
No 64
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=39.65 E-value=3.1e+02 Score=25.35 Aligned_cols=60 Identities=10% Similarity=0.189 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039012 726 VTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMAL 785 (876)
Q Consensus 726 L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l 785 (876)
|...|..+...+..++..........+.+......|..-+..+......+....+++...
T Consensus 13 I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~ 72 (117)
T smart00503 13 IRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKE 72 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555444444333222222224455566666666666555555555555443
No 65
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=39.60 E-value=84 Score=35.01 Aligned_cols=10 Identities=10% Similarity=0.016 Sum_probs=4.6
Q ss_pred HHHHHHHhhc
Q 039012 590 LEVACDKLRS 599 (876)
Q Consensus 590 l~~A~~eLr~ 599 (876)
+..|+.-|++
T Consensus 177 i~~aL~~LH~ 186 (353)
T PLN00034 177 ILSGIAYLHR 186 (353)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 66
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=39.56 E-value=2.4e+02 Score=23.97 Aligned_cols=62 Identities=5% Similarity=0.061 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccchhhhhHHHHHHHHHHHHHHHHHHH
Q 039012 760 VVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKI 825 (876)
Q Consensus 760 ~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k~e~~~fF~iv~dFl~~f~ka~kEv~~ 825 (876)
.|..+..........|.....++...+..+...|.|... ..|...+..|...+++.++.+.+
T Consensus 8 ~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~----~af~~~~~~~~~~~~~~~~~L~~ 69 (86)
T PF06013_consen 8 QLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAA----DAFQDKFEEWNQAFRQLNEALEE 69 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTS----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555566666666777777777767766543 23444444444444444444433
No 67
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=38.33 E-value=20 Score=33.22 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 039012 237 KEIIIAVVATAVTTFALVALLFLCCLKS 264 (876)
Q Consensus 237 ktv~iav~~ta~~t~~~a~~~fl~c~~~ 264 (876)
..|-.....++.+.++++..+++||+.+
T Consensus 40 ayWpyLA~GGG~iLilIii~Lv~CC~~K 67 (98)
T PF07204_consen 40 AYWPYLAAGGGLILILIIIALVCCCRAK 67 (98)
T ss_pred hhhHHhhccchhhhHHHHHHHHHHhhhh
Confidence 3444444444555555554455555443
No 68
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=37.73 E-value=72 Score=37.29 Aligned_cols=28 Identities=7% Similarity=0.153 Sum_probs=16.1
Q ss_pred cccchhHHHHHHHhhhcchhhHHHHhhh
Q 039012 116 SFTHWSIEYAQLLVSWLNAPRRYLAAEL 143 (876)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (876)
.....|+++.+.++.....=+.|+.++-
T Consensus 180 ~~D~~hveWvKa~l~l~~eL~~YVk~hh 207 (480)
T KOG2675|consen 180 EKDPRHVEWVKAYLALFLELQAYVKEHH 207 (480)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666666665555444466666653
No 69
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=37.57 E-value=17 Score=38.31 Aligned_cols=27 Identities=22% Similarity=0.264 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCC
Q 039012 239 IIIAVVATAVTTFALVALLFLCCLKSR 265 (876)
Q Consensus 239 v~iav~~ta~~t~~~a~~~fl~c~~~r 265 (876)
++||+++++.+.++++++...+|+..|
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~R 127 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQR 127 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhh
Confidence 888888888666666666664444443
No 70
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=36.69 E-value=15 Score=38.96 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=11.6
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 039012 236 HKEIIIAVVATAVTTFALVAL 256 (876)
Q Consensus 236 ~ktv~iav~~ta~~t~~~a~~ 256 (876)
+-++||||++++++.++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i 56 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFI 56 (221)
T ss_pred ceeeeeeeecchhhhHHHHHH
Confidence 456777776665544444333
No 71
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=36.43 E-value=3e+02 Score=36.53 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=10.1
Q ss_pred cCCCCCCC--Cccccchhhh
Q 039012 36 DDGDGGAG--DDLVIDDKMV 53 (876)
Q Consensus 36 ~~~~~~~~--~~~~~~~~~~ 53 (876)
+|.+.|+| +.+++|....
T Consensus 1562 eee~ell~~~~~~~~da~qi 1581 (1958)
T KOG0391|consen 1562 EEEDELLGYTRCLMIDAYQI 1581 (1958)
T ss_pred hhcccccccCccceeehhhc
Confidence 35556655 6667774433
No 72
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=36.41 E-value=30 Score=39.52 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcC
Q 039012 236 HKEIIIAVVATAVTTFALVALLFLCCLKSRSKRI 269 (876)
Q Consensus 236 ~ktv~iav~~ta~~t~~~a~~~fl~c~~~r~~~~ 269 (876)
..-|+.|.+++.+.-|++.+|+|||-.|.|-||.
T Consensus 13 ~qivlwgsLaav~~f~lis~LifLCsSC~reKK~ 46 (428)
T PF15347_consen 13 VQIVLWGSLAAVTTFLLISFLIFLCSSCDREKKP 46 (428)
T ss_pred eeEEeehHHHHHHHHHHHHHHHHHhhcccccccC
Confidence 4455566666555556666778888444444443
No 73
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=36.37 E-value=2.2e+02 Score=25.94 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=15.7
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 039012 750 NKDEKTEFYNVVTKFLERAETDIAWLLEEEK 780 (876)
Q Consensus 750 ~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k 780 (876)
+..+...+.+.+..-++.+...+..+.+..+
T Consensus 24 t~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~ 54 (102)
T PF14523_consen 24 TPRDSQELREKIHQLIQKTNQLIKEISELLK 54 (102)
T ss_dssp SSS--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677776555555555554444333
No 74
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=35.37 E-value=4.8e+02 Score=28.98 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=12.4
Q ss_pred CccHHHHHHHHHHHhhhhhh
Q 039012 646 KTTLLHFVVQEIIRSEGIRA 665 (876)
Q Consensus 646 k~TLLhflv~~Iir~e~~~a 665 (876)
+.++...| +.|+.++|-=|
T Consensus 95 k~S~~sil-q~If~KHGDIA 113 (269)
T PF05278_consen 95 KPSQVSIL-QKIFEKHGDIA 113 (269)
T ss_pred cHhHHHHH-HHHHHhCccHh
Confidence 45666666 56888887543
No 75
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=34.67 E-value=1.7e+02 Score=31.35 Aligned_cols=24 Identities=8% Similarity=0.253 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 039012 575 SHQEDMSSIKDSFKTLEVACDKLR 598 (876)
Q Consensus 575 ~f~~~~~~l~~~l~~l~~A~~eLr 598 (876)
++++++.++...++....+++.|.
T Consensus 4 ~l~ddf~~le~~~d~~~~~~~~l~ 27 (215)
T cd07593 4 TLSEEFLELEKEIELRKEGMERLH 27 (215)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666665555555553
No 76
>PRK10404 hypothetical protein; Provisional
Probab=34.36 E-value=1.9e+02 Score=27.23 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=29.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccccCCCc
Q 039012 755 TEFYNVVTKFLERAETDIAWLLEEE-KRIMALVKSTADYFHGNSG 798 (876)
Q Consensus 755 d~F~e~m~~Fle~Ae~ei~~L~e~~-k~~~~l~k~~~~YFged~~ 798 (876)
+...+++...++.+...+..+.+.. .+.......+-+|-++++=
T Consensus 37 ~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw 81 (101)
T PRK10404 37 VELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPW 81 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 4466677778888887777766543 2356666667788888763
No 77
>PRK10132 hypothetical protein; Provisional
Probab=34.12 E-value=2.1e+02 Score=27.34 Aligned_cols=44 Identities=5% Similarity=-0.007 Sum_probs=31.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCc
Q 039012 755 TEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSG 798 (876)
Q Consensus 755 d~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~ 798 (876)
....+++...+..++..+....+...+.......+-+|-++++-
T Consensus 44 ~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw 87 (108)
T PRK10132 44 EAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPW 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcH
Confidence 44667788888888887776666555556666667788887764
No 78
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=33.52 E-value=4.8e+02 Score=28.06 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCcccchhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012 774 WLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITTK 828 (876)
Q Consensus 774 ~L~e~~k~~~~l~k~~~~YFged~~k~e~~~fF~iv~dFl~~f~ka~kEv~~~~~ 828 (876)
...+...+-..++.++-+|||-.-+..++ .|..||.+--+|-+...+
T Consensus 150 ~~~~~k~rkerl~eEvre~fGy~vDprdp--------rF~eml~~kEkeeKKk~K 196 (217)
T PF10147_consen 150 KAQAAKERKERLIEEVREHFGYKVDPRDP--------RFQEMLQEKEKEEKKKKK 196 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcCCCCCh--------HHHHHHHHHHHHHHHHHH
Confidence 34445556666778889999977554442 567777666666665555
No 79
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=33.35 E-value=2.3e+02 Score=35.64 Aligned_cols=6 Identities=0% Similarity=-0.424 Sum_probs=2.4
Q ss_pred CCCCCC
Q 039012 288 AGMHLS 293 (876)
Q Consensus 288 ~~s~~s 293 (876)
++..+.
T Consensus 479 n~kv~~ 484 (894)
T KOG0132|consen 479 NVKVAD 484 (894)
T ss_pred cccccc
Confidence 444333
No 80
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=32.47 E-value=98 Score=34.76 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccH
Q 039012 576 HQEDMSSIKDSFKTLEVACDKLRSSR 601 (876)
Q Consensus 576 f~~~~~~l~~~l~~l~~A~~eLr~S~ 601 (876)
|+..+-.-...|..|+.-.+++|.|-
T Consensus 284 FerQVI~EL~~LQqIEr~AkeMRasA 309 (407)
T PF04625_consen 284 FERQVIAELKMLQQIERMAKEMRASA 309 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55555444556778888888888654
No 81
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=32.26 E-value=1.1e+02 Score=30.86 Aligned_cols=87 Identities=16% Similarity=0.105 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCChHHHHHhhcCCCCC--C-------CCChHHHHHHHhcCcccHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039012 518 LELLQTLLKMAPTTDEELKLRLFPGDI--S-------QLGPAERFLKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFK 588 (876)
Q Consensus 518 ~e~L~~Llk~~Pt~eE~~~L~~~~gd~--~-------~L~~aEqFl~~l~~Ip~~~~RL~~llf~~~f~~~~~~l~~~l~ 588 (876)
..+..+|..+.|+-+|++.+...-+.. . .|..++..+.....+.++ . +.-+..|...+.++...|.
T Consensus 37 ~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~----n-~~kk~~y~~Ki~~le~~l~ 111 (147)
T PF05659_consen 37 KRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRRW----N-LYKKPRYARKIEELEESLR 111 (147)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccHH----H-HHhhHhHHHHHHHHHHHHH
Confidence 345567788999999998876432221 1 122223333333333321 1 1234557777888887777
Q ss_pred HHHHHHHHhhccHHHHHHHHH
Q 039012 589 TLEVACDKLRSSRLFLKLLEA 609 (876)
Q Consensus 589 ~l~~A~~eLr~S~~l~~lL~~ 609 (876)
.+...--++.....+++++..
T Consensus 112 ~f~~v~~q~~~~~D~~~l~~~ 132 (147)
T PF05659_consen 112 RFIQVDLQLHQLRDIKELLAK 132 (147)
T ss_pred HHhcchhHHHHHHHHHHHHHH
Confidence 766655555554455544443
No 82
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=32.12 E-value=4.8e+02 Score=25.35 Aligned_cols=33 Identities=6% Similarity=0.003 Sum_probs=20.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039012 754 KTEFYNVVTKFLERAETDIAWLLEEEKRIMALV 786 (876)
Q Consensus 754 dd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~ 786 (876)
+......|...+.........+....+.+....
T Consensus 39 ~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~ 71 (151)
T cd00179 39 DPELKQELESLVQEIKKLAKEIKGKLKELEESN 71 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777766666666666555443
No 83
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=31.97 E-value=49 Score=42.05 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=9.6
Q ss_pred hccHHHHHHHHHHHHHHHH
Q 039012 720 VIDADSVTATVSKLSTSLT 738 (876)
Q Consensus 720 ~vd~d~L~~~v~~L~~~L~ 738 (876)
.+|+..+..++..+...+.
T Consensus 621 ~~dL~~~a~~L~~la~~~~ 639 (806)
T PF05478_consen 621 PVDLPSLANQLEALANSLP 639 (806)
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 3455555555555544443
No 84
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.87 E-value=1.4e+02 Score=33.93 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 039012 578 EDMSSIKDSFKTLEVACDKLR 598 (876)
Q Consensus 578 ~~~~~l~~~l~~l~~A~~eLr 598 (876)
...+.|+..+..|...|+.|.
T Consensus 253 ~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 253 AMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred HHHHHHHHHHHHHHhhhHHHH
Confidence 344555556666666666653
No 85
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=30.97 E-value=1.7e+02 Score=38.05 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012 803 LRLFTIVRDFLIMLDKSCKQVKITTK 828 (876)
Q Consensus 803 ~~fF~iv~dFl~~f~ka~kEv~~~~~ 828 (876)
++.=..++||-..++++..|+++..+
T Consensus 798 ee~e~~l~dy~~~Le~~f~e~re~~~ 823 (1228)
T PRK12270 798 EEAEQALRDYQGQLERVFNEVREAEK 823 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44557889999999999999999988
No 86
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.92 E-value=1.5e+02 Score=33.73 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 039012 581 SSIKDSFKTL 590 (876)
Q Consensus 581 ~~l~~~l~~l 590 (876)
..|...++.|
T Consensus 263 ~~L~~niDIL 272 (365)
T KOG2391|consen 263 QSLQKNIDIL 272 (365)
T ss_pred HHHHhhhHHH
Confidence 3333333333
No 87
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=30.43 E-value=17 Score=40.94 Aligned_cols=21 Identities=52% Similarity=1.341 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 039012 351 PPPPGPPPPPPPPRPRPPAPP 371 (876)
Q Consensus 351 pppp~pp~pppppppppppp~ 371 (876)
....++++||||||||||+++
T Consensus 225 ~~~~~~~~PpPPppPpPP~~~ 245 (312)
T PF01213_consen 225 PSASAPAAPPPPPPPPPPPAP 245 (312)
T ss_dssp ---------------------
T ss_pred CCccccCCCCCCCCCCccccc
No 88
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=30.40 E-value=5.9e+02 Score=25.82 Aligned_cols=24 Identities=29% Similarity=0.543 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 039012 576 HQEDMSSIKDSFKTLEVACDKLRS 599 (876)
Q Consensus 576 f~~~~~~l~~~l~~l~~A~~eLr~ 599 (876)
++++++.+...+..+...+..|.+
T Consensus 24 ~D~~f~~~~~~~~~~~~~~~~l~~ 47 (229)
T PF03114_consen 24 IDEEFEELEEKFKQLEESIKKLQK 47 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666677777666666643
No 89
>PRK11637 AmiB activator; Provisional
Probab=30.20 E-value=5.6e+02 Score=29.94 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039012 760 VVTKFLERAETDIAWLLEEEKRIMALVKSTA 790 (876)
Q Consensus 760 ~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~ 790 (876)
.+..=+...+.+|..+++......+.++..+
T Consensus 100 ~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 100 QLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555554444
No 90
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=30.15 E-value=79 Score=28.57 Aligned_cols=47 Identities=26% Similarity=0.401 Sum_probs=26.6
Q ss_pred Ccccc-hHHHHHHH-HHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCccccc
Q 039012 232 DDVRH-KEIIIAVV-ATAVTTFALVALLFLCCLKSRSKRIDPVKGQNDDRPLLNS 284 (876)
Q Consensus 232 ~~~~~-ktv~iav~-~ta~~t~~~a~~~fl~c~~~r~~~~~~~~~~~d~~pll~~ 284 (876)
++... .-++.|++ +=+++|++++...|+|-+..| +..|.|++-+.++
T Consensus 27 ~C~~ls~g~LaGiV~~D~vlTLLIv~~vy~car~r~------r~~~~~~kvYiNm 75 (79)
T PF07213_consen 27 GCYPLSPGLLAGIVAADAVLTLLIVLVVYYCARPRR------RPTQEDDKVYINM 75 (79)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHhhccccc------CCcccCCEEEEeC
Confidence 44433 34444444 446778888777777654332 2345677766554
No 91
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=30.01 E-value=1.8e+02 Score=29.88 Aligned_cols=70 Identities=24% Similarity=0.325 Sum_probs=39.6
Q ss_pred ChhHHHHHHHHHhhc-CC---CHHHHHHHHhhCCCCCHHHHHHHHhcCCChH-HHHHhhcCCCCCCCCChHHHHH
Q 039012 485 DTRKAQNLSIILRAL-NL---TSEEVVDALEEGNELPLELLQTLLKMAPTTD-EELKLRLFPGDISQLGPAERFL 554 (876)
Q Consensus 485 D~KraqNi~I~L~~l-k~---s~eeI~~aI~~~d~L~~e~L~~Llk~~Pt~e-E~~~L~~~~gd~~~L~~aEqFl 554 (876)
|..-||.+--.|-+- +- =..++...|++...|.+.+-+.+++|.-+.+ ++..+..|+.|..+|++--.-+
T Consensus 31 d~~Aaq~LrtA~~k~Eq~nPgf~yD~~~~il~~~~l~VNl~Es~LRm~~~~d~ney~v~r~E~~fqeLn~ka~aL 105 (207)
T KOG4025|consen 31 DPRAAQALRTALTKCEQANPGFLYDFTKVILDDSELSVNLQESYLRMHDTSDTNEYIVSRYEQDFQELNKKAIAL 105 (207)
T ss_pred ChhHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhccccchHHHHHHhhcccchhhHhhcCCCccHHHHHHHHHHH
Confidence 555566654444332 11 1346667777777788888888888873322 3334555555555555444333
No 92
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=29.94 E-value=4.3e+02 Score=25.69 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=46.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cccCCCcccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 039012 755 TEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTAD----YFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKIT 826 (876)
Q Consensus 755 d~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~----YFged~~k~e~~~fF~iv~dFl~~f~ka~kEv~~~ 826 (876)
..+...+..|++.-+.++..|......+......... |+ ..|..-|.+|+.|.....+..+-++..
T Consensus 14 ~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~d~e~yl------~nPlnaF~LIrRl~~dW~~~~~~~~~~ 83 (134)
T PF08336_consen 14 EELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKSDPEEYL------SNPLNAFSLIRRLHQDWPKWEKLMEQP 83 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhh------hcHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 4567788889988888888887766666655544332 32 246678999999998887776666554
No 93
>PHA03190 UL14 tegument protein; Provisional
Probab=29.88 E-value=1.3e+02 Score=31.47 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=16.6
Q ss_pred hhHHHHHHhhhccccccccccc
Q 039012 94 TKETFLDCLKKSLHFHVSSEEA 115 (876)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~ 115 (876)
.|+..|+|--.+..+++++...
T Consensus 115 d~E~~L~~a~~ei~l~~~~~~d 136 (196)
T PHA03190 115 DAEIDLECAEAEIALHIPADED 136 (196)
T ss_pred HHHHHHHHHHHHhcccCCCCcc
Confidence 4788899999998777766544
No 94
>PRK11637 AmiB activator; Provisional
Probab=29.84 E-value=4.1e+02 Score=31.05 Aligned_cols=30 Identities=10% Similarity=-0.024 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 039012 758 YNVVTKFLERAETDIAWLLEEEKR-IMALVK 787 (876)
Q Consensus 758 ~e~m~~Fle~Ae~ei~~L~e~~k~-~~~l~k 787 (876)
...+..=+...+.++....+.+.+ +...++
T Consensus 105 i~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 105 IDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777665543 333443
No 95
>PF15050 SCIMP: SCIMP protein
Probab=29.67 E-value=42 Score=32.48 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Q 039012 239 IIIAVVATAVTTFALVALLFLCCLK 263 (876)
Q Consensus 239 v~iav~~ta~~t~~~a~~~fl~c~~ 263 (876)
+|.||++ ++.-++++|+.+|.||
T Consensus 10 iiLAVaI--I~vS~~lglIlyCvcR 32 (133)
T PF15050_consen 10 IILAVAI--ILVSVVLGLILYCVCR 32 (133)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHH
Confidence 4455554 3333445555555433
No 96
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=29.16 E-value=72 Score=40.03 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=26.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhh-hccCCCCcCCCCCCCCCCC----cccccccCCCCCCCc
Q 039012 234 VRHKEIIIAVVATAVTTFALVALLFLC-CLKSRSKRIDPVKGQNDDR----PLLNSSLSAGMHLSS 294 (876)
Q Consensus 234 ~~~ktv~iav~~ta~~t~~~a~~~fl~-c~~~r~~~~~~~~~~~d~~----pll~~s~s~~s~~ss 294 (876)
.+|+..+.|++.+.++ |++++||++ |.|.|||.+. + ++..+ .-|....-|+.++.+
T Consensus 269 ~YHT~fLl~ILG~~~l--ivl~lL~vLl~yCrrkc~~~-r--~~~~~~~l~~~l~~~KkDQ~TS~s 329 (807)
T PF10577_consen 269 TYHTVFLLAILGGTAL--IVLILLCVLLCYCRRKCLKP-R--QRHRKLTLSSALDVSKKDQTTSTS 329 (807)
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhcccCCc-c--cccccccccccccccccccccchh
Confidence 4666666666663332 333333333 3245557663 2 23333 134555566665554
No 97
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=29.11 E-value=3.4e+02 Score=28.27 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=23.7
Q ss_pred chhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 039012 708 LSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLD 745 (876)
Q Consensus 708 Ls~EL~~V~kAA~vd~d~L~~~v~~L~~~L~~~k~~l~ 745 (876)
|.++|.....| -+.|..++.+|..++..+++.+.
T Consensus 86 LReQLEq~~~~----N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 86 LREQLEQARKA----NEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456665554 37788888888888888776654
No 98
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.87 E-value=4.3e+02 Score=23.84 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=24.1
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 039012 719 AVIDADSVTATVSKLSTSLTKTKAFLDT 746 (876)
Q Consensus 719 A~vd~d~L~~~v~~L~~~L~~~k~~l~~ 746 (876)
..++...+...+..|+..|.+++..+..
T Consensus 19 ~~~~~kd~~~~~~~lk~Klq~ar~~i~~ 46 (83)
T PF07544_consen 19 PPLSSKDLDTATGSLKHKLQKARAAIRE 46 (83)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6678888999999999999999988754
No 99
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.33 E-value=2.1e+02 Score=29.06 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039012 727 TATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYN--VVTKFLERAETDIAWLLEEEKRIMALVKS 788 (876)
Q Consensus 727 ~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e--~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~ 788 (876)
..+..+|...+.++++++ ..+...|+|.+ +++.-+++.++|++.+.++.......++.
T Consensus 39 ~~~~~~l~~Ei~~l~~E~----~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~ 98 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKREL----NAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDK 98 (161)
T ss_dssp HHHHHHHHHHHHHHHHHH----TTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666655543 34455677864 56666666666666666555444444433
No 100
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=28.12 E-value=7.3e+02 Score=26.51 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039012 725 SVTATVSKLSTSLTKTKAFL 744 (876)
Q Consensus 725 ~L~~~v~~L~~~L~~~k~~l 744 (876)
.+...+..+.+.+...++.+
T Consensus 155 ~l~~~l~~l~~~l~~~~~~l 174 (292)
T PF01544_consen 155 DLRRELSRLRRSLSPLREVL 174 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHH
Confidence 34445555555555554444
No 101
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=28.04 E-value=20 Score=31.06 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 039012 233 DVRHKEIIIAVVATAVTTFALVALLFLCC 261 (876)
Q Consensus 233 ~~~~ktv~iav~~ta~~t~~~a~~~fl~c 261 (876)
.+-...+|.|++++++.+++++.+++++|
T Consensus 8 ~~vlaavIaG~Vvgll~ailLIlf~iyR~ 36 (64)
T PF01034_consen 8 SEVLAAVIAGGVVGLLFAILLILFLIYRM 36 (64)
T ss_dssp -----------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888888888877777766
No 102
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.93 E-value=8e+02 Score=32.11 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhccccCCCC
Q 039012 588 KTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGT 621 (876)
Q Consensus 588 ~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt 621 (876)
+.+..|...+.=++.+...+++| +||.+-..+
T Consensus 599 ~~v~~al~Li~yd~~l~~amefv--FG~tlVc~~ 630 (1174)
T KOG0933|consen 599 DNVELALSLIGYDDELKKAMEFV--FGSTLVCDS 630 (1174)
T ss_pred chHHHHHHHhcCCHHHHHHHHHH--hCceEEecC
Confidence 45778889999999999999987 898877654
No 103
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=27.71 E-value=2.9e+02 Score=26.31 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=30.5
Q ss_pred chhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccCCC
Q 039012 755 TEFYNVVTKFLERAETDIAWL-LEEEKRIMALVKSTADYFHGNS 797 (876)
Q Consensus 755 d~F~e~m~~Fle~Ae~ei~~L-~e~~k~~~~l~k~~~~YFged~ 797 (876)
.+...+...-+++++.++... ....++....+..+=+|-++++
T Consensus 40 ~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~P 83 (104)
T COG4575 40 EELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENP 83 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 455667777777888777776 3345666777777778888876
No 104
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=27.39 E-value=54 Score=36.61 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=17.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhhhhccCCC
Q 039012 238 EIIIAVVATAV-TTFALVALLFLCCLKSRS 266 (876)
Q Consensus 238 tv~iav~~ta~-~t~~~a~~~fl~c~~~r~ 266 (876)
..++.++++++ +.+|+++|+.+|++|+|.
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRS 299 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEeccc
Confidence 34444444333 446666777888877654
No 105
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=27.28 E-value=5.4e+02 Score=28.00 Aligned_cols=6 Identities=17% Similarity=0.285 Sum_probs=2.2
Q ss_pred HHHHHH
Q 039012 81 RRISEA 86 (876)
Q Consensus 81 ~~~~~~ 86 (876)
++|+++
T Consensus 60 etid~i 65 (341)
T KOG2893|consen 60 ETIDKI 65 (341)
T ss_pred hhhhcc
Confidence 333333
No 106
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.28 E-value=8.5e+02 Score=26.63 Aligned_cols=49 Identities=10% Similarity=-0.035 Sum_probs=20.3
Q ss_pred hhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhcccCCCCC
Q 039012 597 LRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGK 646 (876)
Q Consensus 597 Lr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~Ks~D~k 646 (876)
|+.+..|+.+|..- .+-.||=.+..++...|=.+..|+-..-+|..|..
T Consensus 4 Ls~~~~f~~FLts~-dw~a~~kq~~~~~~~~~~~~~~lna~~kv~~~d~e 52 (240)
T cd07667 4 LSFNEHFNVFLTAK-DLNAYKKQGIALLSKMGESVKYVTGGYKLRSRPLE 52 (240)
T ss_pred cccChHHHHHHcch-hHHHHhhcccccccccchHHHHHHHHhccCCCChH
Confidence 34455566665554 33333333322222222123444444444554443
No 107
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=26.94 E-value=70 Score=27.96 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=18.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 039012 235 RHKEIIIAVVATAVTTFALVAL 256 (876)
Q Consensus 235 ~~ktv~iav~~ta~~t~~~a~~ 256 (876)
.+.+|+.+.++||+++++++++
T Consensus 48 ~n~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 48 SNTKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999877654
No 108
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.91 E-value=1.6e+03 Score=29.23 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=13.8
Q ss_pred ccHHHHHHHHHHHhhhhhh
Q 039012 647 TTLLHFVVQEIIRSEGIRA 665 (876)
Q Consensus 647 ~TLLhflv~~Iir~e~~~a 665 (876)
..|+.=|+..|.+.-|.++
T Consensus 644 ~rl~nDL~~~vtk~~gf~a 662 (1007)
T KOG1984|consen 644 PRLLNDLVRNVTKKQGFDA 662 (1007)
T ss_pred HHHHHHHHHhcccceeeee
Confidence 4678788887877777664
No 109
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=25.84 E-value=1.5e+02 Score=33.30 Aligned_cols=9 Identities=22% Similarity=0.338 Sum_probs=5.5
Q ss_pred ccHHHHHHH
Q 039012 647 TTLLHFVVQ 655 (876)
Q Consensus 647 ~TLLhflv~ 655 (876)
.|-+|-|.+
T Consensus 326 rTPvHKITR 334 (407)
T PF04625_consen 326 RTPVHKITR 334 (407)
T ss_pred CCchhhhhH
Confidence 466776654
No 110
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=25.34 E-value=6.8e+02 Score=26.48 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhccccCCCcccchhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012 778 EEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITTK 828 (876)
Q Consensus 778 ~~k~~~~l~k~~~~YFged~~k~e~~~fF~iv~dFl~~f~ka~kEv~~~~~ 828 (876)
.+.+...++.++-+|||---...++ .|-.|+..--+|-+++.+
T Consensus 165 ~~~r~erli~eiqe~fGy~vDprd~--------RF~emLqqkEkeekK~~K 207 (225)
T KOG4848|consen 165 KEVRLERLIREIQEYFGYWVDPRDP--------RFEEMLQQKEKEEKKAVK 207 (225)
T ss_pred HHHHHHHHHHHHHHHhCccCCCCCH--------HHHHHHHHHHHHHHHHHH
Confidence 3456667778888999864332221 455666655555555544
No 111
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=24.98 E-value=3.9e+02 Score=28.56 Aligned_cols=69 Identities=9% Similarity=0.107 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc-------cc--hhhhhH-HHHHHHHHHHHHHHHHHHh
Q 039012 758 YNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGK-------DE--GLRLFT-IVRDFLIMLDKSCKQVKIT 826 (876)
Q Consensus 758 ~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k-------~e--~~~fF~-iv~dFl~~f~ka~kEv~~~ 826 (876)
.+++..-++.++.++....++++.....+..+-..|..+-.. .+ -..||. .+..|...+..+|-...+.
T Consensus 152 ~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~s~~cv~~d~~ 230 (236)
T cd07651 152 LEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKSNCWTFANNISTLCVDDDES 230 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 456777777888777777777776666666665544333211 11 124565 5788888888888665544
No 112
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.39 E-value=7.4e+02 Score=25.27 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039012 763 KFLERAETDIAWLLEEEKRIMALVKST 789 (876)
Q Consensus 763 ~Fle~Ae~ei~~L~e~~k~~~~l~k~~ 789 (876)
.+.+..++++..+.+.++.+.+.+.++
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666655555555544443
No 113
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=23.99 E-value=2.8e+02 Score=25.03 Aligned_cols=72 Identities=8% Similarity=0.131 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccchhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012 756 EFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITTK 828 (876)
Q Consensus 756 ~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k~e~~~fF~iv~dFl~~f~ka~kEv~~~~~ 828 (876)
+|...+.+=++.....+..+......+...+.+....|.+........+.|.... ....+....+++.....
T Consensus 7 Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~ 78 (92)
T PF14712_consen 7 GLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHE 78 (92)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHH
Confidence 4666677777788888888877777777777777776654433233344565555 66666666666665544
No 114
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=23.80 E-value=4.9e+02 Score=29.38 Aligned_cols=130 Identities=12% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHH-------------HHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHH
Q 039012 649 LLHFV-------------VQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDV 715 (876)
Q Consensus 649 LLhfl-------------v~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V 715 (876)
||.|| |++||+ +..+.++.+...+....+ .+|.. .+..|-+|+.+|
T Consensus 124 LLNlin~Cd~F~~~d~~~v~eVI~--------~RN~~MHS~emkvs~~wm---------~~~~~----~i~nll~~f~~i 182 (307)
T PF15112_consen 124 LLNLINSCDHFKKYDRKKVREVIK--------CRNEIMHSSEMKVSSQWM---------RDFQM----KIQNLLNEFRNI 182 (307)
T ss_pred HHHHHHHhhccccccHHHHHHHHH--------HHHHhhcCcccccCHHHH---------HHHHH----HHHHHHHHhccC
Q ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccc
Q 039012 716 KKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKST-ADYFH 794 (876)
Q Consensus 716 ~kAA~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~-~~YFg 794 (876)
..+ .....+|+.+++.+.........=.+-...-++.....-..++-+.+.+.+...++ ....+
T Consensus 183 pe~---------------~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~ 247 (307)
T PF15112_consen 183 PEI---------------VAAGSRIEQLLTSDWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEE 247 (307)
T ss_pred hHH---------------HHHHHHHHHHHhhhhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred CCCcccchhhhhHHHHHHHH
Q 039012 795 GNSGKDEGLRLFTIVRDFLI 814 (876)
Q Consensus 795 ed~~k~e~~~fF~iv~dFl~ 814 (876)
.+....+....+.++.+|+.
T Consensus 248 ~~~~~ee~~~~l~~~~~fL~ 267 (307)
T PF15112_consen 248 QEVLPEEDSKRLEVLKEFLR 267 (307)
T ss_pred ccccchhhhHHHHHHHHHHH
No 115
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.66 E-value=6.6e+02 Score=31.79 Aligned_cols=49 Identities=8% Similarity=0.054 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCc-ccch-hhhhHHHHHHHHHHH
Q 039012 769 ETDIAWLLEEEKRIMALVKSTADYFHGNSG-KDEG-LRLFTIVRDFLIMLD 817 (876)
Q Consensus 769 e~ei~~L~e~~k~~~~l~k~~~~YFged~~-k~e~-~~fF~iv~dFl~~f~ 817 (876)
.++++.+.+..+.++..++.++.-.+.... -... .+|+.-+..|-..++
T Consensus 599 aeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~ 649 (717)
T PF10168_consen 599 AERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQ 649 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555443332211 1112 345555554444443
No 116
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=23.53 E-value=1.7e+02 Score=41.18 Aligned_cols=42 Identities=33% Similarity=0.426 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCccccccc
Q 039012 239 IIIAVVATAVTTFALVALLFLCCLKSRSKRIDPVKGQNDDRPLLNSSL 286 (876)
Q Consensus 239 v~iav~~ta~~t~~~a~~~fl~c~~~r~~~~~~~~~~~d~~pll~~s~ 286 (876)
++|+|++ ++.|+.+.++++||.|++++ .|+++|+.+||.-+.
T Consensus 3996 i~I~V~l--~~ifilvvlf~~crKk~~rk----ky~~~~~~~ll~rn~ 4037 (4289)
T KOG1219|consen 3996 IIIIVLL--ALIFILVVLFWKCRKKNSRK----KYGAHCPVDLLRRNT 4037 (4289)
T ss_pred eehhHHH--HHHHHHHHHHHhhhhhccCC----cccccCChhHHhcCC
Confidence 3444444 33344444677777665543 356677777766433
No 117
>PF15234 LAT: Linker for activation of T-cells
Probab=23.50 E-value=3.7e+02 Score=28.15 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=4.7
Q ss_pred HHhhhhcc
Q 039012 256 LLFLCCLK 263 (876)
Q Consensus 256 ~~fl~c~~ 263 (876)
.||+||+.
T Consensus 25 ALCvrCRe 32 (230)
T PF15234_consen 25 ALCVRCRE 32 (230)
T ss_pred HHHHHHhh
Confidence 36777743
No 118
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=23.40 E-value=1.3e+02 Score=33.83 Aligned_cols=8 Identities=13% Similarity=0.197 Sum_probs=3.7
Q ss_pred HhhhhccC
Q 039012 257 LFLCCLKS 264 (876)
Q Consensus 257 ~fl~c~~~ 264 (876)
..+|++|.
T Consensus 217 a~~cW~Rl 224 (341)
T PF06809_consen 217 AGYCWYRL 224 (341)
T ss_pred hhheEEEe
Confidence 34454453
No 119
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=23.34 E-value=70 Score=24.99 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh--hccC
Q 039012 238 EIIIAVVATAVTTFALVALLFLC--CLKS 264 (876)
Q Consensus 238 tv~iav~~ta~~t~~~a~~~fl~--c~~~ 264 (876)
+.++|..++.++.+++..+.++| ||.+
T Consensus 3 ~s~IaIIv~V~vg~~iiii~~~~YaCcyk 31 (38)
T PF02439_consen 3 SSTIAIIVAVVVGMAIIIICMFYYACCYK 31 (38)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34678888888877777666555 5543
No 120
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=23.22 E-value=2.3e+02 Score=36.27 Aligned_cols=7 Identities=29% Similarity=0.700 Sum_probs=4.0
Q ss_pred ccccccc
Q 039012 420 FFWDKVL 426 (876)
Q Consensus 420 l~W~KI~ 426 (876)
=.|..|.
T Consensus 514 ~~W~~Il 520 (824)
T PRK07764 514 ERWPEIL 520 (824)
T ss_pred HHHHHHH
Confidence 4566664
No 121
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=22.88 E-value=2.2e+02 Score=34.99 Aligned_cols=13 Identities=38% Similarity=0.531 Sum_probs=8.1
Q ss_pred HHhhccccCCCCC
Q 039012 610 VLKTGNRMNDGTY 622 (876)
Q Consensus 610 VL~iGN~mN~gt~ 622 (876)
=|+.-|.|-+|.+
T Consensus 662 d~a~rNcLv~~e~ 674 (807)
T KOG1094|consen 662 DLATRNCLVDGEF 674 (807)
T ss_pred cccccceeecCcc
Confidence 3566677766654
No 122
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=22.86 E-value=90 Score=29.45 Aligned_cols=31 Identities=29% Similarity=0.218 Sum_probs=20.2
Q ss_pred ccchHHHHHHHHHHHHHHHHH--HHHhhhhccC
Q 039012 234 VRHKEIIIAVVATAVTTFALV--ALLFLCCLKS 264 (876)
Q Consensus 234 ~~~ktv~iav~~ta~~t~~~a--~~~fl~c~~~ 264 (876)
++.=.+++||+++|+++=+++ |+.|-.|.|-
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~ 46 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWYKY 46 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445588899998888765444 4445557653
No 123
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=22.74 E-value=23 Score=36.70 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 039012 237 KEIIIAVVATAVTTFALVALLFLCCLKSRSKR 268 (876)
Q Consensus 237 ktv~iav~~ta~~t~~~a~~~fl~c~~~r~~~ 268 (876)
+...+||++=.++.+++++++++||+++|++|
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~~~R~~Rr 187 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFFWNRKKRR 187 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhheeecccee
Confidence 33334444433444445555555555444433
No 124
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.72 E-value=2.6e+02 Score=34.61 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=9.7
Q ss_pred chhHHHHHHHhhhcchhhHHHH
Q 039012 119 HWSIEYAQLLVSWLNAPRRYLA 140 (876)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~ 140 (876)
.|....+..++......+++|.
T Consensus 322 ~~s~~~L~~~i~~L~eae~~LK 343 (620)
T PRK14948 322 QINLERILQWQQHLKGSEYQLK 343 (620)
T ss_pred hCCHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444454443
No 125
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=22.18 E-value=1.6e+02 Score=33.74 Aligned_cols=12 Identities=42% Similarity=0.828 Sum_probs=6.4
Q ss_pred cCCCCC---CCcccc
Q 039012 617 MNDGTY---RGGAQA 628 (876)
Q Consensus 617 mN~gt~---rG~A~G 628 (876)
|-+||+ +|+.+|
T Consensus 368 M~gGTFTISNGGVfG 382 (457)
T KOG0559|consen 368 MAGGTFTISNGGVFG 382 (457)
T ss_pred ccCceEEEeCCcEee
Confidence 555654 355555
No 126
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.87 E-value=4.9e+02 Score=25.65 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=5.5
Q ss_pred hccchhhHHHHH
Q 039012 705 VSGLSTELEDVK 716 (876)
Q Consensus 705 V~~Ls~EL~~V~ 716 (876)
|..+...|++|-
T Consensus 45 ~~~v~kql~~vs 56 (126)
T PF07889_consen 45 VASVSKQLEQVS 56 (126)
T ss_pred HHHHHHHHHHHH
Confidence 344444454443
No 127
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=21.79 E-value=7.9e+02 Score=24.32 Aligned_cols=29 Identities=14% Similarity=0.369 Sum_probs=13.2
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 039012 712 LEDVKKAAVIDADSVTATVSKLSTSLTKT 740 (876)
Q Consensus 712 L~~V~kAA~vd~d~L~~~v~~L~~~L~~~ 740 (876)
|...-++-..+.+.|...+++....+.++
T Consensus 40 L~~cA~~Va~~Q~~L~~riKevd~~~~~l 68 (131)
T PF10158_consen 40 LNQCAEAVAFDQNALAKRIKEVDQEIAKL 68 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455555555554444443
No 128
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=21.77 E-value=70 Score=37.06 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=22.1
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 039012 232 DDVRHKEIIIAVVATAVTTFALVALLFLCCLKS 264 (876)
Q Consensus 232 ~~~~~ktv~iav~~ta~~t~~~a~~~fl~c~~~ 264 (876)
++-+..-+|.||++-+++..|+++.||++..|.
T Consensus 381 ~~~~~~~i~~avl~p~~il~~~~~~~~~~v~rr 413 (436)
T PTZ00208 381 RHQRTAMIILAVLVPAIILAIIAVAFFIMVKRR 413 (436)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhheeeeec
Confidence 444556777888888887776666666666443
No 129
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=21.67 E-value=2e+02 Score=34.76 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=12.6
Q ss_pred hccHHHHHHHHHHHhhccccCCCC
Q 039012 598 RSSRLFLKLLEAVLKTGNRMNDGT 621 (876)
Q Consensus 598 r~S~~l~~lL~~VL~iGN~mN~gt 621 (876)
++-..|..+|..=|.-=-|...|.
T Consensus 412 kKRnyFL~VLnsDLnpfK~~Ss~~ 435 (574)
T PF07462_consen 412 KKRNYFLDVLNSDLNPFKYSSSGE 435 (574)
T ss_pred HHHHHHHHHHhhhccccccCCCCC
Confidence 344556666666555444444443
No 130
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=21.38 E-value=1.1e+02 Score=35.71 Aligned_cols=40 Identities=8% Similarity=-0.087 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccccCC
Q 039012 757 FYNVVTKFLERAETDIAWLLEEE--KRIMALVKSTADYFHGN 796 (876)
Q Consensus 757 F~e~m~~Fle~Ae~ei~~L~e~~--k~~~~l~k~~~~YFged 796 (876)
....+..-+...+..+..|.... +-+.+.|.....=+|++
T Consensus 316 ~l~~i~~~Ln~~e~~l~~l~alldCr~lh~dY~~al~g~C~d 357 (406)
T PF04906_consen 316 PLLAIQEDLNSTERSLHQLTALLDCRGLHKDYVDALRGLCYD 357 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHhhccc
Confidence 34445555555555555444331 23334444444444444
No 131
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=21.20 E-value=1.8e+02 Score=27.55 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 039012 805 LFTIVRDFLIMLDKSCKQVKIT 826 (876)
Q Consensus 805 fF~iv~dFl~~f~ka~kEv~~~ 826 (876)
+-.+.++|...+.+..+|=.+.
T Consensus 62 ~~~~~~~~~~~i~~iI~eG~~~ 83 (133)
T PF08359_consen 62 INEIRREYLRIIEEIIEEGQEQ 83 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3344555655555555554444
No 132
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.15 E-value=5.6e+02 Score=28.43 Aligned_cols=9 Identities=11% Similarity=0.287 Sum_probs=5.8
Q ss_pred HHHHHHHHH
Q 039012 809 VRDFLIMLD 817 (876)
Q Consensus 809 v~dFl~~f~ 817 (876)
|.||+..+.
T Consensus 129 fsD~IsRvt 137 (265)
T COG3883 129 FSDLISRVT 137 (265)
T ss_pred HHHHHHHHH
Confidence 567776664
No 133
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=20.80 E-value=4.3e+02 Score=24.06 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccccCCC
Q 039012 757 FYNVVTKFLERAETDIAWLLEE-EKRIMALVKSTADYFHGNS 797 (876)
Q Consensus 757 F~e~m~~Fle~Ae~ei~~L~e~-~k~~~~l~k~~~~YFged~ 797 (876)
..+.+...++.+...+....+. ..++......+-+|-++++
T Consensus 32 ~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 32 ARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 3444555555555555544332 2233333444555655544
No 134
>PHA03211 serine/threonine kinase US3; Provisional
Probab=20.62 E-value=1.1e+02 Score=36.29 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhhccccCC
Q 039012 586 SFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMND 619 (876)
Q Consensus 586 ~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~ 619 (876)
.+..+..|+..|++.. |++-=|+-.|+|=.
T Consensus 265 i~~qi~~aL~yLH~~g----IvHrDLKP~NILl~ 294 (461)
T PHA03211 265 VARQLLSAIDYIHGEG----IIHRDIKTENVLVN 294 (461)
T ss_pred HHHHHHHHHHHHHHCC----EEECcCCHHHEEEC
Confidence 3444555666665432 23333455565543
No 135
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.33 E-value=5.6e+02 Score=24.19 Aligned_cols=68 Identities=9% Similarity=0.058 Sum_probs=42.2
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039012 718 AAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTA 790 (876)
Q Consensus 718 AA~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~ 790 (876)
|.+-+.+.|...+.+..+.+..++..+ +.+...+.+ ..+.--+.+-+.++..+.+..+.+..+..-+.
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l----~~LPt~~dv-~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKL----EHLPTRDDV-HDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777765544 333333334 44777777778788877777766655544333
No 136
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.18 E-value=5.9e+02 Score=27.58 Aligned_cols=8 Identities=13% Similarity=0.476 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 039012 761 VTKFLERA 768 (876)
Q Consensus 761 m~~Fle~A 768 (876)
|+.-+..+
T Consensus 65 lE~iIkqa 72 (230)
T PF10146_consen 65 LENIIKQA 72 (230)
T ss_pred HHHHHHHH
Confidence 44444333
No 137
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=20.11 E-value=7.2e+02 Score=28.08 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=51.9
Q ss_pred hHHHHhhhhhhhhccchhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHH
Q 039012 693 SAEKYSILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDI 772 (876)
Q Consensus 693 ~~e~y~~lgL~~V~~Ls~EL~~V~kAA~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei 772 (876)
.+|.|++.-+ ...+|.|=+.+-....|-|...+-.|...+...++.+..- .+-++.++.++.....++
T Consensus 89 vEekyrkAMv-----~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK-------~~elEr~K~~~d~L~~e~ 156 (302)
T PF09738_consen 89 VEEKYRKAMV-----SNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREK-------IRELERQKRAHDSLREEL 156 (302)
T ss_pred HHHHHHHHHH-----HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4677776321 2234555444444455666666666666665555444321 222577888888888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 039012 773 AWLLEEEKRIMALVKS 788 (876)
Q Consensus 773 ~~L~e~~k~~~~l~k~ 788 (876)
..|+++.+.-.+++.+
T Consensus 157 ~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 157 DELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888777777655
No 138
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.00 E-value=4.9e+02 Score=31.40 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=48.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-----CcccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 039012 754 KTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGN-----SGKDEGLRLFTIVRDFLIMLDKSCKQVKIT 826 (876)
Q Consensus 754 dd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged-----~~k~e~~~fF~iv~dFl~~f~ka~kEv~~~ 826 (876)
.++|..-++.|.+-...+.....+.++++.+...++.+||..- ....+...|=.+-..++..+++-.++....
T Consensus 217 ~~gi~~Llekffem~~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~ 294 (491)
T KOG0251|consen 217 NDGIINLLEKFFEMSKHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGG 294 (491)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccc
Confidence 3567777788888888888888888888888888888877521 111122233355666777776666666433
Done!