Query 039012
Match_columns 876
No_of_seqs 392 out of 1759
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j1d_G DAAM1, disheveled-assoc 100.0 5.4E-69 1.9E-73 620.5 39.5 376 409-826 7-398 (483)
2 3obv_E Protein diaphanous homo 100.0 3.4E-68 1.2E-72 608.5 36.3 378 410-828 3-388 (457)
3 4eah_A Formin-like protein 3, 100.0 1.3E-67 4.4E-72 595.7 32.1 368 408-828 10-385 (402)
4 1ux5_A BNI1 protein; structura 100.0 4.3E-65 1.5E-69 577.8 27.1 366 410-828 2-403 (411)
5 1v9d_A Diaphanous protein homo 100.0 6.2E-63 2.1E-67 547.2 28.8 312 476-828 4-317 (340)
6 2z73_A Rhodopsin; visual pigme 96.1 0.00088 3E-08 74.8 0.0 15 79-93 127-141 (448)
7 2k1k_A Ephrin type-A receptor 77.0 3.8 0.00013 30.7 4.8 26 236-261 9-34 (38)
8 2l2t_A Receptor tyrosine-prote 75.0 4.2 0.00014 31.5 4.7 28 236-263 9-36 (44)
9 2ks1_B Epidermal growth factor 69.9 3.2 0.00011 32.1 3.0 27 237-263 11-37 (44)
10 2k9y_A Ephrin type-A receptor 65.5 5.4 0.00018 29.9 3.5 6 258-263 33-38 (41)
11 2jwa_A Receptor tyrosine-prote 61.6 8.4 0.00029 29.8 3.9 27 238-265 12-38 (44)
12 3okq_A BUD site selection prot 55.3 45 0.0015 31.9 8.5 21 724-744 57-77 (141)
13 2l34_A TYRO protein tyrosine k 44.2 26 0.00088 25.4 3.9 28 236-263 5-32 (33)
14 2jp3_A FXYD domain-containing 37.9 24 0.00082 29.5 3.3 23 237-259 15-37 (67)
15 2h8h_A Proto-oncogene tyrosine 37.8 6.9 0.00023 44.9 0.0 9 502-510 224-232 (535)
16 1vcs_A Vesicle transport throu 37.7 2.2E+02 0.0076 25.4 10.1 66 718-783 28-94 (102)
17 2klu_A T-cell surface glycopro 36.2 30 0.001 29.0 3.5 20 243-262 12-31 (70)
18 1nxk_A MAP kinase-activated pr 34.3 9.5 0.00032 41.9 0.4 29 587-619 167-195 (400)
19 1zww_A SH3-containing GRB2-lik 33.2 3.5E+02 0.012 27.7 12.3 24 575-598 28-51 (256)
20 4hpq_C ATG17, KLTH0D15642P; au 32.1 2.4E+02 0.0083 31.6 11.3 45 559-606 129-173 (413)
21 2knc_B Integrin beta-3; transm 29.6 27 0.00091 30.2 2.4 13 251-263 21-33 (79)
22 4hpq_C ATG17, KLTH0D15642P; au 29.5 3.4E+02 0.012 30.3 12.0 25 804-828 326-350 (413)
23 2z0v_A SH3-containing GRB2-lik 29.2 3E+02 0.01 28.0 10.8 25 575-599 12-36 (240)
24 3onj_A T-snare VTI1; helix, HA 29.2 3E+02 0.01 24.3 10.8 68 717-784 23-94 (97)
25 3fx7_A Putative uncharacterize 26.7 3.4E+02 0.012 24.2 9.5 31 756-786 56-86 (94)
26 2ets_A Hypothetical protein; s 26.7 3E+02 0.01 25.8 9.2 26 752-777 38-63 (128)
27 3okq_A BUD site selection prot 25.9 4.4E+02 0.015 25.1 11.9 91 724-818 24-114 (141)
28 1avo_B 11S regulator; proteaso 25.2 3.9E+02 0.013 25.3 9.9 35 725-759 14-48 (140)
29 1ez3_A Syntaxin-1A; three heli 22.3 4.2E+02 0.014 23.7 12.6 35 753-787 44-78 (127)
30 3oja_B Anopheles plasmodium-re 21.5 2.7E+02 0.0092 31.8 9.7 39 759-797 547-585 (597)
31 2qyw_A Vesicle transport throu 21.0 4.4E+02 0.015 23.4 9.4 58 722-779 43-101 (102)
No 1
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=100.00 E-value=5.4e-69 Score=620.53 Aligned_cols=376 Identities=26% Similarity=0.391 Sum_probs=330.1
Q ss_pred cccccccCcccccccccccCCCCcccccccccCcc--ccchHHHHhhhccCCCCCc---------cccCCCCCCCCCccc
Q 039012 409 ESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSF--QFNEEMIESLFGYKPATKS---------RNECGKSNSVSSESS 477 (876)
Q Consensus 409 ~s~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s~--~lD~e~lE~lF~~k~~~~~---------k~~~kk~~s~s~~~~ 477 (876)
....|+.+||++||++|+.+.+++|||+++++..+ .+|+++||++|+.+..... +..+..++.....++
T Consensus 7 ~~~~P~~klK~l~W~ki~~~~~~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~kk 86 (483)
T 2j1d_G 7 SIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLK 86 (483)
T ss_dssp CCCCCSSCBCCCCCCCCCGGGCSSSGGGGCCGGGHHHHSCHHHHHHHTBSBC----------------------------
T ss_pred CCCCCCCCCCCcCceECCcccccCCccCcCCchhhccccCHHHHHHHHhhhccccccccccccccccccccccccccccC
Confidence 45568899999999999988889999999988753 5899999999998654221 000000110122346
Q ss_pred ccccccCChhHHHHHHHHHhhcCCCHHHHHHHHhhCCC---CCHHHHHHHHhcCCChHHHHHhhcCCCCCCCCChHHHHH
Q 039012 478 AQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGNE---LPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFL 554 (876)
Q Consensus 478 ~~~vslLD~KraqNi~I~L~~lk~s~eeI~~aI~~~d~---L~~e~L~~Llk~~Pt~eE~~~L~~~~gd~~~L~~aEqFl 554 (876)
++.|+|||+||||||+|+|++|++++++|++||+++|. |+.|.|+.|++++||.||+..|+.|.+|.+.|+++|||+
T Consensus 87 ~~~v~lLD~kRaqNi~I~L~~lk~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aEqFl 166 (483)
T 2j1d_G 87 VKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFL 166 (483)
T ss_dssp -CCBCCSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHHHTTTTCGGGBCHHHHHH
T ss_pred CCcceeCCHHHHHHHHHHHhcCCCCHHHHHHHHHccCccccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHHH
Confidence 78899999999999999999999999999999998764 999999999999999999999999999999999999999
Q ss_pred HHhcCcccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccch
Q 039012 555 KTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTL 634 (876)
Q Consensus 555 ~~l~~Ip~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL 634 (876)
++|+.||+|..||+||+|+.+|++.+.+|.+.|..|..||++|++|..|+.||++||++|||||+| .||+|+||+|++|
T Consensus 167 ~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~~GN~mN~g-~rg~A~GFkL~sL 245 (483)
T 2j1d_G 167 FEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISSL 245 (483)
T ss_dssp HHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCS-SSCCCSCCCGGGG
T ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhccC-CCCCceeeehHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred hhhhcccCC-CCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHH
Q 039012 635 LKLADVKGT-DGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELE 713 (876)
Q Consensus 635 ~KL~d~Ks~-D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~ 713 (876)
.||.|||++ |+++|||||||+.|.++.+ .+.+|.+||.
T Consensus 246 ~KL~d~Ks~~d~k~TLLhylv~~v~~~~p-----------------------------------------~l~~f~~eL~ 284 (483)
T 2j1d_G 246 NKIADTKSSIDKNITLLHYLITIVENKYP-----------------------------------------SVLNLNEELR 284 (483)
T ss_dssp GGGGGSBCSSCTTCBHHHHHHHHHHHHCG-----------------------------------------GGGGHHHHTT
T ss_pred HhhhhcccCCCCCccHHHHHHHHHHHhCc-----------------------------------------hhhchHHHHh
Confidence 999999995 9999999999987643211 1457889999
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039012 714 DVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKN-KDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADY 792 (876)
Q Consensus 714 ~V~kAA~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~-~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~Y 792 (876)
+|.+|++||++.|..++.+|.+++..++..++..-.. .+.++.|..+|..|+..|+.++..|...++++.+.|++++.|
T Consensus 285 ~v~~Askv~~~~l~~~~~~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~y 364 (483)
T 2j1d_G 285 DIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKH 364 (483)
T ss_dssp THHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887654221 245688999999999999999999999999999999999999
Q ss_pred ccCCCcccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 039012 793 FHGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKIT 826 (876)
Q Consensus 793 Fged~~k~e~~~fF~iv~dFl~~f~ka~kEv~~~ 826 (876)
|||++.+..+.+||++|.+|+.+|++|++||.+.
T Consensus 365 FGEd~~~~~~~~fF~~~~~F~~~f~~A~~en~~~ 398 (483)
T 2j1d_G 365 FGEEAGKIQPDEFFGIFDQFLQAVSEAKQENENM 398 (483)
T ss_dssp TTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999899999999999999999999999763
No 2
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=100.00 E-value=3.4e-68 Score=608.53 Aligned_cols=378 Identities=24% Similarity=0.362 Sum_probs=331.0
Q ss_pred ccccccCcccccccccccCCC-CcccccccccCccc--cchHHHHhhhccCCCCCc-c-c-cCCCCCCCCCccccccccc
Q 039012 410 SGAAKTKLKPFFWDKVLASPD-HAMVWHEISSGSFQ--FNEEMIESLFGYKPATKS-R-N-ECGKSNSVSSESSAQYIQI 483 (876)
Q Consensus 410 s~~pk~KLK~l~W~KI~~~~~-~~TIW~~i~~~s~~--lD~e~lE~lF~~k~~~~~-k-~-~~kk~~s~s~~~~~~~vsl 483 (876)
...|..+||++||++|..+.+ ++|||.++++..+. -+++.||.+|+.+..... + . ...........++++.|+|
T Consensus 3 ~~~P~~~mK~l~W~ki~~~~~~~~t~W~~~~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v~l 82 (457)
T 3obv_E 3 VYKPEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELKV 82 (457)
T ss_dssp CCCCSSCBCCCCCCEECTTTTCSSSSGGGCCGGGGCCTTHHHHHHHHTBCC-----------------------CCCCSS
T ss_pred CCCCCCCCcCCCceeCCccccCCCceeeeCccccccChhHHHHHHHHhcccccccccccccccccccccccccCCceeEe
Confidence 357889999999999987665 69999999887653 246889999998754211 1 0 0000000123456788999
Q ss_pred CChhHHHHHHHHHhhcCCCHHHHHHHHhhCC--CCCHHHHHHHHhcCCChHHHHHhhcCCCCCCCCChHHHHHHHhcCcc
Q 039012 484 IDTRKAQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERFLKTLVDIP 561 (876)
Q Consensus 484 LD~KraqNi~I~L~~lk~s~eeI~~aI~~~d--~L~~e~L~~Llk~~Pt~eE~~~L~~~~gd~~~L~~aEqFl~~l~~Ip 561 (876)
||+||+|||+|+|++|++++++|++||+++| .|+.|.|+.|++++||.||+..|+.|.+|...|+++|||++.|+.||
T Consensus 83 LD~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~d~~~L~~~EqF~~~l~~Ip 162 (457)
T 3obv_E 83 LDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVP 162 (457)
T ss_dssp SCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHHHTTTTSGGGSCHHHHHHHHHTSST
T ss_pred cCHHHHhHHHHHHhccCCCHHHHHHHHHhCCcccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHHHHHHHccc
Confidence 9999999999999999999999999999987 49999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhccc
Q 039012 562 FAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVK 641 (876)
Q Consensus 562 ~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d~K 641 (876)
+|..||+||+|+.+|++.+.+|.+.|..|..||++|++|..|+.||++||++|||||+|+.+|+|+||+|++|.||.|||
T Consensus 163 ~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~K 242 (457)
T 3obv_E 163 RLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTK 242 (457)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTCB
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHHhhc
Q 039012 642 GTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAAVI 721 (876)
Q Consensus 642 s~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kAA~v 721 (876)
++|+++||||||++.+.++ |. .+.+|.+||.+|.+|++|
T Consensus 243 s~d~k~TLLh~l~~~v~~~------------------------------------~p-----~l~~f~~eL~~v~~Aakv 281 (457)
T 3obv_E 243 SADQKMTLLHFLAELCEND------------------------------------HP-----EVLKFPDELAHVEKASRV 281 (457)
T ss_dssp CSSTTCBHHHHHHHHHHHH------------------------------------CG-----GGGGHHHHCTTHHHHTTC
T ss_pred cCCCCccHHHHHHHHHHHc------------------------------------Cc-----cccCChhhhhhHHhhccC
Confidence 9999999999999865321 11 256788999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccc
Q 039012 722 DADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDE 801 (876)
Q Consensus 722 d~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k~e 801 (876)
|++.|..++.+|.+++..++..++......+.++.|..+|..|+..|+.++..|...++.+.+.|+++++||||++.+..
T Consensus 282 s~~~l~~dl~~L~~~l~~v~~~l~~~~~~~~~~d~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~~~ 361 (457)
T 3obv_E 282 SAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLS 361 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999998887654333456789999999999999999999999999999999999999999999989
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012 802 GLRLFTIVRDFLIMLDKSCKQVKITTK 828 (876)
Q Consensus 802 ~~~fF~iv~dFl~~f~ka~kEv~~~~~ 828 (876)
+++||++|.+|+.+|++|++||.++++
T Consensus 362 ~~eFF~~~~~F~~~fkkA~~eN~~r~e 388 (457)
T 3obv_E 362 VEEFFMDLHNFRNMFLQAVKENQKRRE 388 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986654
No 3
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=100.00 E-value=1.3e-67 Score=595.70 Aligned_cols=368 Identities=23% Similarity=0.388 Sum_probs=322.2
Q ss_pred ccccccccCcccccccccccCCCCcccccccccCcc--ccchHHHHhhhccCCCCCccc-cCCCCCCCCCcccccccccC
Q 039012 408 GESGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSF--QFNEEMIESLFGYKPATKSRN-ECGKSNSVSSESSAQYIQII 484 (876)
Q Consensus 408 ~~s~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s~--~lD~e~lE~lF~~k~~~~~k~-~~kk~~s~s~~~~~~~vslL 484 (876)
.....|+.+||++||++|..+++.+|||+++++..+ .+|+++||++|+.+....... ...+. ....+++++|+||
T Consensus 10 Kk~~~~k~kmk~l~W~kl~~~~i~~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~~~~~~k~--k~~~k~~~~v~lL 87 (402)
T 4eah_A 10 KKPIKTKFRLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKN--KTAQKAASKVTLL 87 (402)
T ss_dssp CCCCCCSSCCCCCCCCEECHHHHTTSTTSSCCTTSCSSTTTHHHHHHHSCCCC----------------------CBCSS
T ss_pred CCCCCCCCCCCCcCceeCChHhccCccccCCchhhhccccCHHHHHHHHhhcccCCccccchhcc--cccccCCCceeeC
Confidence 345578899999999999988899999999988776 689999999999875321100 00010 1123456789999
Q ss_pred ChhHHHHHHHHHhhcCCCHHHHHHHHhhCC--CCCHHHHHHHHhcCCChHHHHHhhcCCCC---CCCCChHHHHHHHhcC
Q 039012 485 DTRKAQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTLLKMAPTTDEELKLRLFPGD---ISQLGPAERFLKTLVD 559 (876)
Q Consensus 485 D~KraqNi~I~L~~lk~s~eeI~~aI~~~d--~L~~e~L~~Llk~~Pt~eE~~~L~~~~gd---~~~L~~aEqFl~~l~~ 559 (876)
|+||+|||+|+|++|++++++|++||+++| .|+.|.|+.|++++||.||+..|+.|.+| .+.|+++|||+++|+.
T Consensus 88 d~kra~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~~L~~~EqF~~~l~~ 167 (402)
T 4eah_A 88 EANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSK 167 (402)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHHHHHHHSSCCTTTBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhccHHHHHHHHHHc
Confidence 999999999999999999999999999887 59999999999999999999999999765 4789999999999999
Q ss_pred cccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccchhhhhc
Q 039012 560 IPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLAD 639 (876)
Q Consensus 560 Ip~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~SL~KL~d 639 (876)
||+|..||+||+|+.+|++.+.+|.+.+..|..||++|++|+.|++||++||++|||||+| .||+|+||+|++|.||.|
T Consensus 168 ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g-~rg~A~GFkL~sL~KL~d 246 (402)
T 4eah_A 168 VERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSS-KRGAVYGFKLQSLDLLLD 246 (402)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCS-SSCCCSCBCGGGGGSSSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhccCC-CCCccceeeHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred ccCCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHHHHHHHh
Q 039012 640 VKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELEDVKKAA 719 (876)
Q Consensus 640 ~Ks~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~~V~kAA 719 (876)
||++|+++|||||||+.|.++. . .+.+|.+||.+|.+|+
T Consensus 247 ~Ks~d~k~TLLh~l~~~~~~~~------------------------------------p-----~l~~f~~eL~~v~~Aa 285 (402)
T 4eah_A 247 TKSTDRKMTLLHFIALTVKEKY------------------------------------P-----ELANFWQELHFVEKAA 285 (402)
T ss_dssp SBCTTSSSBHHHHHHHHHHHHC------------------------------------G-----GGGTCSTTCCSHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHhhh------------------------------------H-----HHHHHhhhhhhHHHHh
Confidence 9999999999999998664321 1 2457889999999999
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 039012 720 VIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGK 799 (876)
Q Consensus 720 ~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k 799 (876)
+||++.|..++.+|.+++..++..+.. .+ ..+|..|+..|+.++..|...++++++.|++++.||||++.+
T Consensus 286 ~v~~~~l~~d~~~L~~~l~~~~~e~~~-------~d--~~~l~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgedpk~ 356 (402)
T 4eah_A 286 AVSLENVLLDVKELGRGMELIRRECSI-------HD--NSVLRNFLSTNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKT 356 (402)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHT-------TC--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcc-------cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999998765432 11 247999999999999999999999999999999999999998
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012 800 DEGLRLFTIVRDFLIMLDKSCKQVKITTK 828 (876)
Q Consensus 800 ~e~~~fF~iv~dFl~~f~ka~kEv~~~~~ 828 (876)
..+.+||++|.+|+.+|++|++||.++++
T Consensus 357 ~~~~~fF~~~~~F~~~fk~A~~en~~r~~ 385 (402)
T 4eah_A 357 TPPSVFFPVFVRFIRSYKEAEQENEARKK 385 (402)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999988766
No 4
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=100.00 E-value=4.3e-65 Score=577.84 Aligned_cols=366 Identities=19% Similarity=0.271 Sum_probs=317.3
Q ss_pred ccccccCcccccccccccCCCCcccccccccCccc--c----chHHHHhhhccCCCCCccccCCCCCCCCCccccccccc
Q 039012 410 SGAAKTKLKPFFWDKVLASPDHAMVWHEISSGSFQ--F----NEEMIESLFGYKPATKSRNECGKSNSVSSESSAQYIQI 483 (876)
Q Consensus 410 s~~pk~KLK~l~W~KI~~~~~~~TIW~~i~~~s~~--l----D~e~lE~lF~~k~~~~~k~~~kk~~s~s~~~~~~~vsl 483 (876)
...|+.|||++||++|.+ .++|||+++++..+. + |+++||++|+.+...+. .. ...++++.|+|
T Consensus 2 ~p~P~~klK~l~W~ki~~--~~~tiW~~~~~~~~~~~l~~~~d~~~lE~lF~~~~~~~~--~~------~k~~~~~~v~l 71 (411)
T 1ux5_A 2 YPRPHKKLKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSL--AS------KRKEDLQKITF 71 (411)
T ss_dssp CCCCSSCBCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHH--HH------HHHHTTTSBCC
T ss_pred CCCCCCCCCCcCcccCCC--CCCCcCcCCccHHHHHhhhhhchHHHHHHHhcccccccc--cc------cccCCCCeeee
Confidence 456889999999999986 899999999876542 3 78999999998864321 11 11234568999
Q ss_pred CChhHHHHHHHHHhhc-CCCHHHHHHHHhhCCC--CCH-HHHHH------------HH-hcCCChHHHH------HhhcC
Q 039012 484 IDTRKAQNLSIILRAL-NLTSEEVVDALEEGNE--LPL-ELLQT------------LL-KMAPTTDEEL------KLRLF 540 (876)
Q Consensus 484 LD~KraqNi~I~L~~l-k~s~eeI~~aI~~~d~--L~~-e~L~~------------Ll-k~~Pt~eE~~------~L~~~ 540 (876)
||+||+|||+|+|++| ++++++|++||+++|. |+. ++++. |+ +++||.+|++ .++.|
T Consensus 72 Ld~kraqNi~I~L~~~~~~~~~ei~~ai~~~D~~~L~~~~lie~L~~~~~~ei~~~L~~~~~P~~~e~e~l~~~~~~~~~ 151 (411)
T 1ux5_A 72 LSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPP 151 (411)
T ss_dssp SCHHHHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCC
T ss_pred cChHHHHHHHHHHHhcCCCCHHHHHHHHHhcChhhcCHHHHHHHhchhHHHhhHHHHHHhcCCCchhHHHHHHHHHhhhc
Confidence 9999999999999999 8999999999999884 663 23333 45 6999988865 34467
Q ss_pred CCCCCCCChHHHHHHHhc-Cc-ccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccC
Q 039012 541 PGDISQLGPAERFLKTLV-DI-PFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMN 618 (876)
Q Consensus 541 ~gd~~~L~~aEqFl~~l~-~I-p~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN 618 (876)
.||.+.|+++|||+++|+ .| +++..||+||+|+.+|++.+.+|.+.+..|..||++|++|+.|++||++||++|||||
T Consensus 152 ~~d~~~L~~~eqf~~~l~~~i~~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN 231 (411)
T 1ux5_A 152 EKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMN 231 (411)
T ss_dssp SSCSTTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred cCChhhCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhCccc
Confidence 799999999999999986 79 5689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccceeccchhhhhcccCCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHh
Q 039012 619 DGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYS 698 (876)
Q Consensus 619 ~gt~rG~A~GFkL~SL~KL~d~Ks~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~ 698 (876)
+|+. +|+||+|++|.||.|||++|+++|||||||+.|.++ |.
T Consensus 232 ~g~~--~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~------------------------------------~p 273 (411)
T 1ux5_A 232 DTSK--QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLN------------------------------------YP 273 (411)
T ss_dssp CGGG--CCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHH------------------------------------CG
T ss_pred CCCC--CeeEeehhHHHHHHHhhCCCCCccHHHHHHHHHHHh------------------------------------Cc
Confidence 9985 799999999999999999999999999999855321 11
Q ss_pred hhhhhhhccchhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHh-hh---cccccchhhHHHHHHHHHHHHHHHH
Q 039012 699 ILGLQVVSGLSTELEDVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTE-MK---NKDEKTEFYNVVTKFLERAETDIAW 774 (876)
Q Consensus 699 ~lgL~~V~~Ls~EL~~V~kAA~vd~d~L~~~v~~L~~~L~~~k~~l~~~-~k---~~~edd~F~e~m~~Fle~Ae~ei~~ 774 (876)
.+.+|.+||.+|.+|++||++.|..++.+|.+++.+++..++.. +. ..++++.|...|..|++.|+.++..
T Consensus 274 -----~l~~f~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~~~ 348 (411)
T 1ux5_A 274 -----SFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDL 348 (411)
T ss_dssp -----GGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----ccccccchhhhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcccHHHHHHHHHHHHHHHHHHH
Confidence 25678899999999999999999999999999999999887642 11 1256789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCc-ccchhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012 775 LLEEEKRIMALVKSTADYFHGNSG-KDEGLRLFTIVRDFLIMLDKSCKQVKITTK 828 (876)
Q Consensus 775 L~e~~k~~~~l~k~~~~YFged~~-k~e~~~fF~iv~dFl~~f~ka~kEv~~~~~ 828 (876)
|.+.++++.+.|++++.||||++. +..+.+||++|.+|+.+|++|++||.++++
T Consensus 349 l~~~~~~~~~~~~~l~~yfged~~~~~~~~~fF~~~~~F~~~f~~a~~en~~~~e 403 (411)
T 1ux5_A 349 LEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEE 403 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 457899999999999999999999998877
No 5
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=100.00 E-value=6.2e-63 Score=547.19 Aligned_cols=312 Identities=26% Similarity=0.384 Sum_probs=267.4
Q ss_pred ccccccccCChhHHHHHHHHHhhcCCCHHHHHHHHhhCC--CCCHHHHHHHHhcCCChHHHHHhhcCCCCCCCCChHHHH
Q 039012 476 SSAQYIQIIDTRKAQNLSIILRALNLTSEEVVDALEEGN--ELPLELLQTLLKMAPTTDEELKLRLFPGDISQLGPAERF 553 (876)
Q Consensus 476 ~~~~~vslLD~KraqNi~I~L~~lk~s~eeI~~aI~~~d--~L~~e~L~~Llk~~Pt~eE~~~L~~~~gd~~~L~~aEqF 553 (876)
++++.|+|||+||+|||+|+|++|++++++|++||+++| .|+.|.|+.|++++||+||+..|+.|.+|.+.|+++|||
T Consensus 4 kk~~~i~vLD~kraqNi~I~L~~~k~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~EqF 83 (340)
T 1v9d_A 4 KKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQF 83 (340)
T ss_dssp --CCCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGGGSCHHHHH
T ss_pred CCCCeeeecCHHHHhHHHHHHhhcCCCHHHHHHHHHhCCcccCCHHHHHHHHccCCCHHHHHHHHHhhCChhhcCHHHHH
Confidence 356789999999999999999999999999999999987 499999999999999999999999999999999999999
Q ss_pred HHHhcCcccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccccCCCCCCCcccceeccc
Q 039012 554 LKTLVDIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDT 633 (876)
Q Consensus 554 l~~l~~Ip~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~gt~rG~A~GFkL~S 633 (876)
++.|+.||++..||+||+|+.+|++.+.+|.+.+..|..||++|++|+.|++||++||++|||||+|+++|+|+||+|++
T Consensus 84 ~~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~s 163 (340)
T 1v9d_A 84 GVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISF 163 (340)
T ss_dssp HHHHHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------CC
T ss_pred HHHHHCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHcCcCCCCCCCCceeeeehHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCCCccHHHHHHHHHHHhhhhhhhhhhcccCCccccccccchhccCCChhhHHHHhhhhhhhhccchhhHH
Q 039012 634 LLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTARASHSTSSASLKSEEFVEDSSPQSAEKYSILGLQVVSGLSTELE 713 (876)
Q Consensus 634 L~KL~d~Ks~D~k~TLLhflv~~Iir~e~~~a~~~~~e~~s~~~~~~k~~dll~~~~~~~~e~y~~lgL~~V~~Ls~EL~ 713 (876)
|.||.|||++|+++|||||||+.+.++. + .+.+|.+||.
T Consensus 164 L~KL~d~Ks~d~k~TLLh~lv~~~~~~~---------------------p--------------------~l~~f~~eL~ 202 (340)
T 1v9d_A 164 LCKLRDTKSADQKMTLLHFLAELCENDH---------------------P--------------------EVLKFPDELA 202 (340)
T ss_dssp HHHHHHSBCSSTTSBHHHHHHHHHHHSC---------------------C--------------------TTSSGGGGCT
T ss_pred HHhhhhhcCCCCCccHHHHHHHHHHHhC---------------------c--------------------hhccchhHHH
Confidence 9999999999999999999998653211 1 1567889999
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039012 714 DVKKAAVIDADSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYF 793 (876)
Q Consensus 714 ~V~kAA~vd~d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YF 793 (876)
+|.+|++||++.|..++..|.+++..++..++...+..++++.|.++|..|+..|+.++..|...++++.+.|++++.||
T Consensus 203 ~v~~Askvs~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yf 282 (340)
T 1v9d_A 203 HVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYF 282 (340)
T ss_dssp THHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999887776443445667899999999999999999999999999999999999999
Q ss_pred cCCCcccchhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012 794 HGNSGKDEGLRLFTIVRDFLIMLDKSCKQVKITTK 828 (876)
Q Consensus 794 ged~~k~e~~~fF~iv~dFl~~f~ka~kEv~~~~~ 828 (876)
||++.+..+.+||++|++|+.+|++||+||.++++
T Consensus 283 ged~~~~~~~~fF~~~~~F~~~f~~a~~en~~r~e 317 (340)
T 1v9d_A 283 VFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRE 317 (340)
T ss_dssp TCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999999999999999999999988755
No 6
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=96.14 E-value=0.00088 Score=74.77 Aligned_cols=15 Identities=13% Similarity=-0.161 Sum_probs=10.8
Q ss_pred hhHHHHHHHhcCCch
Q 039012 79 TTRRISEAINDLPPQ 93 (876)
Q Consensus 79 ~~~~~~~~~~~~~~~ 93 (876)
....++..+.+..|.
T Consensus 127 ~~isidRy~aI~~P~ 141 (448)
T 2z73_A 127 AMISIDRYNVIGRPM 141 (448)
T ss_dssp HHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHhccccc
Confidence 456778888887774
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=76.99 E-value=3.8 Score=30.71 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhh
Q 039012 236 HKEIIIAVVATAVTTFALVALLFLCC 261 (876)
Q Consensus 236 ~ktv~iav~~ta~~t~~~a~~~fl~c 261 (876)
....+.|++++.++.+++++++.+++
T Consensus 9 s~GaIAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeeeehHHHHHHHHHHHHHHHH
Confidence 45566666666655444333333333
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=75.05 E-value=4.2 Score=31.49 Aligned_cols=28 Identities=7% Similarity=-0.011 Sum_probs=13.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 039012 236 HKEIIIAVVATAVTTFALVALLFLCCLK 263 (876)
Q Consensus 236 ~ktv~iav~~ta~~t~~~a~~~fl~c~~ 263 (876)
...+..||+.+.++.++++.++|++.+|
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhh
Confidence 3444455554444444444444444443
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=69.88 E-value=3.2 Score=32.13 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 039012 237 KEIIIAVVATAVTTFALVALLFLCCLK 263 (876)
Q Consensus 237 ktv~iav~~ta~~t~~~a~~~fl~c~~ 263 (876)
..+..||+.+.++.++++.++|++.+|
T Consensus 11 ~~IA~gVVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEeehhHHHHHHHHHHHHHHHHhhh
Confidence 344455555444444444444554544
No 10
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=65.49 E-value=5.4 Score=29.89 Aligned_cols=6 Identities=0% Similarity=-0.236 Sum_probs=2.3
Q ss_pred hhhhcc
Q 039012 258 FLCCLK 263 (876)
Q Consensus 258 fl~c~~ 263 (876)
+++|+|
T Consensus 33 ~~~~~r 38 (41)
T 2k9y_A 33 GFFIHR 38 (41)
T ss_dssp HHSSSS
T ss_pred heeEee
Confidence 333433
No 11
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=61.58 E-value=8.4 Score=29.81 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 039012 238 EIIIAVVATAVTTFALVALLFLCCLKSR 265 (876)
Q Consensus 238 tv~iav~~ta~~t~~~a~~~fl~c~~~r 265 (876)
+.++|.+++ ++.++++++.++++.|.|
T Consensus 12 ~~Ia~~vVG-vll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 12 TSIISAVVG-ILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHH-HHHHHHHHHHHHhheehh
Confidence 344555555 445555566655555543
No 12
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=55.28 E-value=45 Score=31.95 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039012 724 DSVTATVSKLSTSLTKTKAFL 744 (876)
Q Consensus 724 d~L~~~v~~L~~~L~~~k~~l 744 (876)
+.+..++..+...|+++++++
T Consensus 57 ~~v~kdi~~a~~eL~~m~~~i 77 (141)
T 3okq_A 57 ETVSKDLENAQADVLKLQEFI 77 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544444
No 13
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=44.20 E-value=26 Score=25.43 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 039012 236 HKEIIIAVVATAVTTFALVALLFLCCLK 263 (876)
Q Consensus 236 ~ktv~iav~~ta~~t~~~a~~~fl~c~~ 263 (876)
+...+.|++++.++..++.+++++|+.|
T Consensus 5 ~~gaIaGIVvgdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 5 SPGVLAGIVVGDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcceEEeEeHHHHHHHHHHHHHHhheec
Confidence 3456677777777777777777777755
No 14
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=37.88 E-value=24 Score=29.55 Aligned_cols=23 Identities=9% Similarity=-0.094 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 039012 237 KEIIIAVVATAVTTFALVALLFL 259 (876)
Q Consensus 237 ktv~iav~~ta~~t~~~a~~~fl 259 (876)
.++=+|.++-|++.|++..++.+
T Consensus 15 ~tLRigGLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 15 ESLQLGGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHheecchhhHHHHHHHHHHHHH
Confidence 45556666666666665443333
No 15
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=37.79 E-value=6.9 Score=44.95 Aligned_cols=9 Identities=11% Similarity=0.206 Sum_probs=4.5
Q ss_pred CHHHHHHHH
Q 039012 502 TSEEVVDAL 510 (876)
Q Consensus 502 s~eeI~~aI 510 (876)
+..++++..
T Consensus 224 SL~eLv~~y 232 (535)
T 2h8h_A 224 SLQQLVAYY 232 (535)
T ss_dssp SHHHHHHHH
T ss_pred ChHHhheee
Confidence 455555444
No 16
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=37.68 E-value=2.2e+02 Score=25.36 Aligned_cols=66 Identities=11% Similarity=0.182 Sum_probs=46.2
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039012 718 AAVIDADSVTATVSKLSTSLTKTKAFLDTE-MKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIM 783 (876)
Q Consensus 718 AA~vd~d~L~~~v~~L~~~L~~~k~~l~~~-~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~ 783 (876)
+...+.+.=...|.++...|..+.+.|.+. +..-.-...+...|..-+..++.++..|+.+++++.
T Consensus 28 i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 28 VPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp GGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677888888998888877542 221122355778898999999999999888776653
No 17
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=36.22 E-value=30 Score=28.98 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 039012 243 VVATAVTTFALVALLFLCCL 262 (876)
Q Consensus 243 v~~ta~~t~~~a~~~fl~c~ 262 (876)
+++++++.|++.+.+|.+|+
T Consensus 12 ivlGg~~~lll~~glcI~cc 31 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFS 31 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHh
Confidence 34455555555555555433
No 18
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=34.26 E-value=9.5 Score=41.91 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhccccCC
Q 039012 587 FKTLEVACDKLRSSRLFLKLLEAVLKTGNRMND 619 (876)
Q Consensus 587 l~~l~~A~~eLr~S~~l~~lL~~VL~iGN~mN~ 619 (876)
+..+..|+.-|++. .+++-=|+-.|+|=.
T Consensus 167 ~~qi~~aL~~LH~~----~ivHrDlkp~Nill~ 195 (400)
T 1nxk_A 167 MKSIGEAIQYLHSI----NIAHRDVKPENLLYT 195 (400)
T ss_dssp HHHHHHHHHHHHHT----TEECCCCCGGGEEES
T ss_pred HHHHHHHHHHHHHC----CccccCcCcceEEEe
Confidence 33444455555432 122333455666643
No 19
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=33.25 E-value=3.5e+02 Score=27.73 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 039012 575 SHQEDMSSIKDSFKTLEVACDKLR 598 (876)
Q Consensus 575 ~f~~~~~~l~~~l~~l~~A~~eLr 598 (876)
++++++.++...++.+..+|+.|.
T Consensus 28 el~~d~~~lE~r~d~~k~~~~kl~ 51 (256)
T 1zww_A 28 KLDDDFKEMERKVDVTSRAVMEIM 51 (256)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888877764
No 20
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=32.07 E-value=2.4e+02 Score=31.56 Aligned_cols=45 Identities=7% Similarity=0.083 Sum_probs=23.7
Q ss_pred CcccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Q 039012 559 DIPFAFKRIESLIFMGSHQEDMSSIKDSFKTLEVACDKLRSSRLFLKL 606 (876)
Q Consensus 559 ~Ip~~~~RL~~llf~~~f~~~~~~l~~~l~~l~~A~~eLr~S~~l~~l 606 (876)
.|..+..||+.+=. +.++++.|..+++..............++.|
T Consensus 129 sv~~L~~kLke~p~---I~~~i~~i~~~y~~~l~~~~~~l~~~~L~~L 173 (413)
T 4hpq_C 129 SSHILDSKLNEIPT---IRKQVENITRQYQTMLAKVQSQLVESRMKGL 173 (413)
T ss_dssp TTTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45566777777611 1445666666666554444333323455544
No 21
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.64 E-value=27 Score=30.23 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=7.2
Q ss_pred HHHHHHHhhhhcc
Q 039012 251 FALVALLFLCCLK 263 (876)
Q Consensus 251 ~~~a~~~fl~c~~ 263 (876)
++++++++|||.|
T Consensus 21 illiGllllliwk 33 (79)
T 2knc_B 21 ILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555566666554
No 22
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=29.48 E-value=3.4e+02 Score=30.32 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcC
Q 039012 804 RLFTIVRDFLIMLDKSCKQVKITTK 828 (876)
Q Consensus 804 ~fF~iv~dFl~~f~ka~kEv~~~~~ 828 (876)
++-.....|...|+.-..|+.+++.
T Consensus 326 ~L~~~Y~~f~~aY~~lL~Ev~RRr~ 350 (413)
T 4hpq_C 326 NLLDFYANFERSYHNLLKEVKRRKE 350 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455777777777777777655
No 23
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=29.19 E-value=3e+02 Score=27.95 Aligned_cols=25 Identities=4% Similarity=0.151 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 039012 575 SHQEDMSSIKDSFKTLEVACDKLRS 599 (876)
Q Consensus 575 ~f~~~~~~l~~~l~~l~~A~~eLr~ 599 (876)
++++++..+...++.+..+|..|..
T Consensus 12 el~~d~~~lE~r~d~~~~~~~~l~k 36 (240)
T 2z0v_A 12 KLDDEFLDMERKIDVTNKVVAEILS 36 (240)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888887753
No 24
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=29.15 E-value=3e+02 Score=24.27 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=47.5
Q ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHh---hhcccccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 039012 717 KAAVIDADSVTATVSKLSTSLTKTKAFLDTE---MKNKDEKTEFYNVVTKFLERAETDIAW-LLEEEKRIMA 784 (876)
Q Consensus 717 kAA~vd~d~L~~~v~~L~~~L~~~k~~l~~~---~k~~~edd~F~e~m~~Fle~Ae~ei~~-L~e~~k~~~~ 784 (876)
.+...+.+.=...|..+..++..+.+.|.+. ..++.....+...|..-+..++.++.. |+.+.+++.+
T Consensus 23 ~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 23 EAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445566666667788888888888776432 233422345788888889999999998 8887777653
No 25
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=26.74 E-value=3.4e+02 Score=24.17 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039012 756 EFYNVVTKFLERAETDIAWLLEEEKRIMALV 786 (876)
Q Consensus 756 ~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~ 786 (876)
++...++.|.+.|.+.|..|.+..+-+.+.+
T Consensus 56 ~l~s~l~~f~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 56 NLKSTFNEFDEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHhHHHHHHHHHhHHHH
Confidence 4566788888989999988888776665543
No 26
>2ets_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.25A {Staphylococcus aureus subsp} SCOP: a.24.26.1
Probab=26.71 E-value=3e+02 Score=25.84 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=21.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHH
Q 039012 752 DEKTEFYNVVTKFLERAETDIAWLLE 777 (876)
Q Consensus 752 ~edd~F~e~m~~Fle~Ae~ei~~L~e 777 (876)
+.+-+|...+++|.+.....+..+..
T Consensus 38 ~~e~DFy~eVKPf~d~vd~~l~eW~~ 63 (128)
T 2ets_A 38 QQDHDFYQTVKPYTEHIDSILNEIKL 63 (128)
T ss_dssp TCCCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccccchHHHHHHHHHHHHH
Confidence 34667999999999999998887765
No 27
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=25.94 E-value=4.4e+02 Score=25.15 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccchh
Q 039012 724 DSVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNSGKDEGL 803 (876)
Q Consensus 724 d~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~~k~e~~ 803 (876)
+.|...|.+|..-+..++.-+-. .......+..+.+..=|..|..++..+.+..+...-.+|.+++- |=..-.+-.
T Consensus 24 d~LvtkVDDLQD~VE~LRkDV~~--RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~--EL~~VceEQ 99 (141)
T 3okq_A 24 DTLLSKVDDLQDVIEIMRKDVAE--RRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEA--ELDKVCEEQ 99 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH--HHHHHHHHH
Confidence 44444444444444433322211 12334556667777778888888888888877777777777641 000111224
Q ss_pred hhhHHHHHHHHHHHH
Q 039012 804 RLFTIVRDFLIMLDK 818 (876)
Q Consensus 804 ~fF~iv~dFl~~f~k 818 (876)
+||..-.+++..++.
T Consensus 100 qfl~~QedL~~DL~e 114 (141)
T 3okq_A 100 QFLTLQEELILDLKE 114 (141)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677666666555543
No 28
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=25.19 E-value=3.9e+02 Score=25.34 Aligned_cols=35 Identities=9% Similarity=0.233 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhH
Q 039012 725 SVTATVSKLSTSLTKTKAFLDTEMKNKDEKTEFYN 759 (876)
Q Consensus 725 ~L~~~v~~L~~~L~~~k~~l~~~~k~~~edd~F~e 759 (876)
.+..++..|...+..++.-+.-.+..+++++.|--
T Consensus 14 ~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV 48 (140)
T 1avo_B 14 RLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGV 48 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccCCCchhH
Confidence 34455666666666666666655666777888853
No 29
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=22.33 E-value=4.2e+02 Score=23.70 Aligned_cols=35 Identities=6% Similarity=0.045 Sum_probs=20.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039012 753 EKTEFYNVVTKFLERAETDIAWLLEEEKRIMALVK 787 (876)
Q Consensus 753 edd~F~e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k 787 (876)
.++.....|...+.........+....+.+.....
T Consensus 44 ~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 44 PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666655555554443
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.50 E-value=2.7e+02 Score=31.80 Aligned_cols=39 Identities=21% Similarity=0.061 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 039012 759 NVVTKFLERAETDIAWLLEEEKRIMALVKSTADYFHGNS 797 (876)
Q Consensus 759 e~m~~Fle~Ae~ei~~L~e~~k~~~~l~k~~~~YFged~ 797 (876)
+.|+..++..++++..+.++...+...++++.+-+.++.
T Consensus 547 ~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 547 IALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 356666666666666666666666666666666665554
No 31
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=21.04 E-value=4.4e+02 Score=23.39 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 039012 722 DADSVTATVSKLSTSLTKTKAFLDTE-MKNKDEKTEFYNVVTKFLERAETDIAWLLEEE 779 (876)
Q Consensus 722 d~d~L~~~v~~L~~~L~~~k~~l~~~-~k~~~edd~F~e~m~~Fle~Ae~ei~~L~e~~ 779 (876)
+.+.=...|.++...|..+.+.|++. +..-.-...+...|..-+..++.++..|+.+.
T Consensus 43 ~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 43 GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33555667888888888888877542 11111235577788888888888888776543
Done!