BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039013
         (77 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V3S|A Chain A, Crystal Structure Of Ges-18
 pdb|3V3S|B Chain B, Crystal Structure Of Ges-18
          Length = 287

 Score = 26.6 bits (57), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 20  ILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIHRESDRVSPGGPD 73
           +L   Q A  +  N  + LLLRE+G      +++ ++  ++ R  DR  P   D
Sbjct: 114 VLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSR-LDRKEPEMSD 166


>pdb|3TSG|A Chain A, Crystal Structure Of Ges-14
 pdb|3TSG|B Chain B, Crystal Structure Of Ges-14
          Length = 287

 Score = 26.6 bits (57), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 20  ILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIHRESDRVSPGGPD 73
           +L   Q A  +  N  + LLLRE+G      +++ ++  ++ R  DR  P   D
Sbjct: 114 VLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSR-LDRKEPEMSD 166


>pdb|2QPN|A Chain A, Ges-1 Beta-Lactamase
 pdb|2QPN|B Chain B, Ges-1 Beta-Lactamase
          Length = 287

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 20  ILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIHRESDRVSP 69
           +L   Q A  +  N  + LLLRE+G      +++ ++  ++ R  DR  P
Sbjct: 114 VLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSR-LDRKEP 162


>pdb|3NI9|A Chain A, Ges-2 Carbapenemase Apo Form
 pdb|3NI9|B Chain B, Ges-2 Carbapenemase Apo Form
 pdb|3NIA|A Chain A, Ges-2 Carbapenemase Tazobactam Complex
          Length = 269

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 20  ILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIHRESDRVSP 69
           +L   Q A  +  N  + LLLRE+G      +++ ++  ++ R  DR  P
Sbjct: 96  VLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSR-LDRKEP 144


>pdb|3V3R|A Chain A, Crystal Structure Of Ges-11
 pdb|3V3R|B Chain B, Crystal Structure Of Ges-11
          Length = 287

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 20  ILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIHRESDRVSP 69
           +L   Q A  +  N  + LLLRE+G      +++ ++  ++ R  DR  P
Sbjct: 114 VLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSR-LDRKEP 162


>pdb|2A98|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
           Inositol 1,4,5- Trisphosphate 3-kinase C
          Length = 259

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 20  ILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIHRESDRVSPGGPDPQHH 77
           +L D +  + M   + S+  L E   +L K +   R    ++ +   V PG P P+ H
Sbjct: 49  LLADFEGPSIMDCKMGSRTYLEE---ELVKARERPRPRKDMYEKMVAVDPGAPTPEEH 103


>pdb|2F8M|A Chain A, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum
 pdb|2F8M|B Chain B, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum
          Length = 244

 Score = 25.4 bits (54), Expect = 9.3,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 32 SNIDSQLLLRELGFDLTKLKHYERLSSTI 60
          ++ID++L  R+LG  LT L+ +  +  TI
Sbjct: 63 TSIDTELKARKLGIPLTTLEKHSNIDITI 91


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,090,736
Number of Sequences: 62578
Number of extensions: 60745
Number of successful extensions: 168
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 7
length of query: 77
length of database: 14,973,337
effective HSP length: 46
effective length of query: 31
effective length of database: 12,094,749
effective search space: 374937219
effective search space used: 374937219
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)