Query 039013
Match_columns 77
No_of_seqs 32 out of 34
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:43:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dg8_A Putative TETR-family tr 66.4 1.2 4.1E-05 27.9 0.0 13 65-77 180-192 (193)
2 2kvv_A Putative excisionase; D 64.7 3.6 0.00012 25.5 1.9 39 34-72 11-49 (78)
3 4ghu_A TNF receptor-associated 46.8 4.4 0.00015 27.6 0.2 9 69-77 187-195 (198)
4 2lfw_A PHYR sigma-like domain; 40.9 15 0.00052 23.0 2.0 46 32-77 108-156 (157)
5 1us7_B HSP90 CO-chaperone CDC3 34.2 10 0.00035 28.0 0.5 11 65-75 172-182 (265)
6 2lnb_A Z-DNA-binding protein 1 30.5 19 0.00064 22.4 1.1 54 17-75 21-80 (80)
7 2kuc_A Putative disulphide-iso 27.8 15 0.00052 21.4 0.4 13 65-77 118-130 (130)
8 2jju_A Signal regulatory prote 25.9 12 0.00043 22.2 -0.3 11 67-77 114-124 (127)
9 2fy1_A RNA-binding motif prote 24.9 29 0.00099 20.8 1.3 15 63-77 100-114 (116)
10 3nyw_A Putative oxidoreductase 22.9 18 0.00061 24.3 0.0 7 71-77 244-250 (250)
No 1
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=66.38 E-value=1.2 Score=27.92 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=0.9
Q ss_pred CccCCCCCCCCCC
Q 039013 65 DRVSPGGPDPQHH 77 (77)
Q Consensus 65 ~RlSPGGPDPqHH 77 (77)
....||+|||+||
T Consensus 180 ~~~~~~~~~~~~~ 192 (193)
T 2dg8_A 180 TDRPAPLEHHHHH 192 (193)
T ss_dssp CC-----------
T ss_pred ccCCCcccccccC
Confidence 3457889999887
No 2
>2kvv_A Putative excisionase; DNA binding, WHTH motif, structural genomics, N structural genomics consortium (NESG), PSI-2; NMR {Klebsiella pneumoniae}
Probab=64.69 E-value=3.6 Score=25.54 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=32.6
Q ss_pred CCHHHHHHHHhhhhhhhhhhcccccccCCCCCccCCCCC
Q 039013 34 IDSQLLLRELGFDLTKLKHYERLSSTIHRESDRVSPGGP 72 (77)
Q Consensus 34 ~~s~~lLrelg~~~sk~k~~~r~~~~~~~~s~RlSPGGP 72 (77)
+.-+.|..-.|+...-.++++...++.|..=+|+||-|=
T Consensus 11 V~e~~l~a~tGLs~~tIkryR~~~WlEGrhyrrvspdG~ 49 (78)
T 2kvv_A 11 MVEKALMVRTGLGARQIESYRQGAWIEGVHFKRVSPSGE 49 (78)
T ss_dssp ECHHHHHHHHCCCHHHHHHHHTTTCCBTTTEEEECSSSS
T ss_pred hCHHHHHHHHCCCHHHHHHHHhchhhheeeeEeeCCCCC
Confidence 345567777899999999988888989999999999983
No 3
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=46.79 E-value=4.4 Score=27.58 Aligned_cols=9 Identities=56% Similarity=1.080 Sum_probs=2.6
Q ss_pred CCCCCCCCC
Q 039013 69 PGGPDPQHH 77 (77)
Q Consensus 69 PGGPDPqHH 77 (77)
.+=|||+||
T Consensus 187 ~~~~~~~~~ 195 (198)
T 4ghu_A 187 SDLPDPHHH 195 (198)
T ss_dssp TTCC-----
T ss_pred ccCCCCccc
Confidence 456888887
No 4
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=40.92 E-value=15 Score=23.02 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=29.9
Q ss_pred cCCCHHHHHHHHhhhhhhhhh-hcccccccC--CCCCccCCCCCCCCCC
Q 039013 32 SNIDSQLLLRELGFDLTKLKH-YERLSSTIH--RESDRVSPGGPDPQHH 77 (77)
Q Consensus 32 ~~~~s~~lLrelg~~~sk~k~-~~r~~~~~~--~~s~RlSPGGPDPqHH 77 (77)
.....+-|...||+...-.+. ..|+...+. .+.....+.||+|.||
T Consensus 108 ~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~~~~~~~~~~~~~ 156 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALELVPRGSHHHHH 156 (157)
T ss_dssp SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCCCCCCCCCCCSSC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCC
Confidence 345666688889988776655 222222222 3677888899999887
No 5
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=34.19 E-value=10 Score=27.98 Aligned_cols=11 Identities=55% Similarity=1.111 Sum_probs=9.8
Q ss_pred CccCCCCCCCC
Q 039013 65 DRVSPGGPDPQ 75 (77)
Q Consensus 65 ~RlSPGGPDPq 75 (77)
+||.|||+||+
T Consensus 172 ~rL~pgglDP~ 182 (265)
T 1us7_B 172 KRLGPGGLDPV 182 (265)
T ss_dssp TTCCTTSCCHH
T ss_pred hccCCCCCCHH
Confidence 78899999994
No 6
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=30.49 E-value=19 Score=22.44 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=32.9
Q ss_pred hhhccchhhHHHHhhcCCCHHHHHHHHhhhhhhhhh-h---cccccccCCCCCc--cCCCCCCCC
Q 039013 17 QARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKH-Y---ERLSSTIHRESDR--VSPGGPDPQ 75 (77)
Q Consensus 17 eaR~L~~~~~~~~~~~~~~s~~lLrelg~~~sk~k~-~---~r~~~~~~~~s~R--lSPGGPDPq 75 (77)
+-++|.+-.-+ ++-+++..|..++|+|-.++.. . .+ +..+. ..+| .+||++||+
T Consensus 21 eekVLe~Lkea---G~PlkageIae~~GvdKKeVdKaik~LKk-EgkI~-SPkRCyw~~~~~~~~ 80 (80)
T 2lnb_A 21 EQRILQVLTEA---GSPVKLAQLVKECQAPKRELNQVLYRMKK-ELKVS-LTSPATWCLGGTDPE 80 (80)
T ss_dssp HHHHHHHHHHH---TSCEEHHHHHHHHTSCHHHHHHHHHHHHH-TTSEE-EEETTEEEESSSSCC
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHCCCHHHHHHHHHHHHH-cCCcc-CCCCceeeCCCCCCC
Confidence 45666554332 4677888899999999877655 1 22 11111 2333 467899985
No 7
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=27.79 E-value=15 Score=21.38 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=5.3
Q ss_pred CccCCCCCCCCCC
Q 039013 65 DRVSPGGPDPQHH 77 (77)
Q Consensus 65 ~RlSPGGPDPqHH 77 (77)
+.++|-||-|+||
T Consensus 118 ~~~~~~~~~~~~~ 130 (130)
T 2kuc_A 118 LGVESEGHHHHHH 130 (130)
T ss_dssp HHHSCCC------
T ss_pred HHHHhccccccCC
Confidence 4578888988887
No 8
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Probab=25.90 E-value=12 Score=22.25 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=1.6
Q ss_pred cCCCCCCCCCC
Q 039013 67 VSPGGPDPQHH 77 (77)
Q Consensus 67 lSPGGPDPqHH 77 (77)
|.+..+||+||
T Consensus 114 V~~~~~~~~~~ 124 (127)
T 2jju_A 114 VRAKPSTRHHH 124 (127)
T ss_dssp EEC--------
T ss_pred EeecCCCcccc
Confidence 45667888887
No 9
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=24.91 E-value=29 Score=20.78 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=7.1
Q ss_pred CCCccCCCCCCCCCC
Q 039013 63 ESDRVSPGGPDPQHH 77 (77)
Q Consensus 63 ~s~RlSPGGPDPqHH 77 (77)
...|--.+||-|+||
T Consensus 100 ~r~R~~~~~~~~~~~ 114 (116)
T 2fy1_A 100 SRNRSPSGSLEHHHH 114 (116)
T ss_dssp SSCCCSCCC------
T ss_pred CCCCccceecccccc
Confidence 467888899999987
No 10
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=22.91 E-value=18 Score=24.28 Aligned_cols=7 Identities=43% Similarity=0.857 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 039013 71 GPDPQHH 77 (77)
Q Consensus 71 GPDPqHH 77 (77)
||+||||
T Consensus 244 ~~~~~~~ 250 (250)
T 3nyw_A 244 GHHHHHH 250 (250)
T ss_dssp -------
T ss_pred cccccCC
Confidence 4555555
Done!