Query 039013
Match_columns 77
No_of_seqs 32 out of 34
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 08:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039013.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039013hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1us7b_ a.205.1.1 (B:) Hsp90 c 30.7 6 0.00044 26.3 0.5 12 64-75 137-148 (201)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 17.7 39 0.0028 16.8 2.0 12 4-15 22-33 (37)
3 d1xk7a1 c.123.1.1 (A:4-405) Cr 17.6 24 0.0018 23.6 1.5 21 35-55 374-394 (402)
4 d1kona_ e.39.1.1 (A:) Hypothet 17.4 14 0.00099 24.5 0.1 7 69-75 36-42 (244)
5 d2cyua1 a.9.1.1 (A:2-40) E3-bi 17.0 31 0.0023 16.9 1.5 20 36-55 5-24 (39)
6 d1w85i_ a.9.1.1 (I:) E3/E1 bin 15.6 28 0.002 17.5 1.1 18 36-53 8-25 (42)
7 d1lfpa_ e.39.1.1 (A:) Hypothet 15.4 13 0.00096 24.4 -0.4 6 70-75 35-40 (243)
8 d1whna_ d.50.1.1 (A:) tRNA-dih 14.2 79 0.0057 18.7 3.2 36 36-74 85-123 (128)
9 d2vjma1 c.123.1.1 (A:2-428) Fo 13.1 42 0.003 22.4 1.8 20 35-54 403-422 (427)
10 d1q7ea_ c.123.1.1 (A:) Hypothe 11.5 45 0.0033 22.2 1.5 19 35-53 392-410 (417)
No 1
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.69 E-value=6 Score=26.33 Aligned_cols=12 Identities=50% Similarity=1.021 Sum_probs=10.2
Q ss_pred CCccCCCCCCCC
Q 039013 64 SDRVSPGGPDPQ 75 (77)
Q Consensus 64 s~RlSPGGPDPq 75 (77)
..|+-|||.||.
T Consensus 137 ~~r~gPggldp~ 148 (201)
T d1us7b_ 137 KKRLGPGGLDPV 148 (201)
T ss_dssp HTTCCTTSCCHH
T ss_pred hhcCCCCCCCHH
Confidence 568999999984
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.68 E-value=39 Score=16.83 Aligned_cols=12 Identities=50% Similarity=0.891 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhh
Q 039013 4 LFFIVFSLLFMS 15 (77)
Q Consensus 4 l~lil~s~~~~s 15 (77)
|++.++.++|++
T Consensus 22 Llifvl~vLFss 33 (37)
T d2axtl1 22 LLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344445555543
No 3
>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}
Probab=17.59 E-value=24 Score=23.55 Aligned_cols=21 Identities=14% Similarity=0.493 Sum_probs=16.8
Q ss_pred CHHHHHHHHhhhhhhhhhhcc
Q 039013 35 DSQLLLRELGFDLTKLKHYER 55 (77)
Q Consensus 35 ~s~~lLrelg~~~sk~k~~~r 55 (77)
+++-+|+||||+..+.+..+.
T Consensus 374 ht~eIL~eLG~s~~eI~~L~~ 394 (402)
T d1xk7a1 374 DTAAILKNIGYSENDIQELVS 394 (402)
T ss_dssp THHHHHHHTTCCHHHHHHHHH
T ss_pred cHHHHHHHcCCCHHHHHHHHH
Confidence 567799999999998877544
No 4
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]}
Probab=17.40 E-value=14 Score=24.51 Aligned_cols=7 Identities=57% Similarity=1.070 Sum_probs=1.0
Q ss_pred CCCCCCC
Q 039013 69 PGGPDPQ 75 (77)
Q Consensus 69 PGGPDPq 75 (77)
-|||||.
T Consensus 36 ~GG~DP~ 42 (244)
T d1kona_ 36 LGGGDPD 42 (244)
T ss_dssp C-----C
T ss_pred cCCCCCc
Confidence 4899995
No 5
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=16.98 E-value=31 Score=16.92 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhhhhhhhhcc
Q 039013 36 SQLLLRELGFDLTKLKHYER 55 (77)
Q Consensus 36 s~~lLrelg~~~sk~k~~~r 55 (77)
.+.+++|.|+|+++.+...+
T Consensus 5 arkla~e~gidl~~i~GtG~ 24 (39)
T d2cyua1 5 IRRLLAEHNLDASAIKGTGV 24 (39)
T ss_dssp HHHHHHHHTCCGGGSCCCSS
T ss_pred HHHHHHHcCCCHHHCcCCCC
Confidence 46799999999997765433
No 6
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=15.60 E-value=28 Score=17.49 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 039013 36 SQLLLRELGFDLTKLKHY 53 (77)
Q Consensus 36 s~~lLrelg~~~sk~k~~ 53 (77)
.+.+.+|.|+|+++.+..
T Consensus 8 arkla~e~gidl~~i~GT 25 (42)
T d1w85i_ 8 VRKYAREKGVDIRLVQGT 25 (42)
T ss_dssp HHHHHHHTTCCTTTSCCC
T ss_pred HHHHHHHcCCCHHHCccC
Confidence 356999999999977654
No 7
>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]}
Probab=15.40 E-value=13 Score=24.42 Aligned_cols=6 Identities=67% Similarity=1.791 Sum_probs=5.0
Q ss_pred CCCCCC
Q 039013 70 GGPDPQ 75 (77)
Q Consensus 70 GGPDPq 75 (77)
|||||.
T Consensus 35 GG~DP~ 40 (243)
T d1lfpa_ 35 GGPNPE 40 (243)
T ss_dssp HCSCGG
T ss_pred CCCCCc
Confidence 789985
No 8
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.21 E-value=79 Score=18.68 Aligned_cols=36 Identities=31% Similarity=0.539 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhhhhhhhhcccccccC---CCCCccCCCCCCC
Q 039013 36 SQLLLRELGFDLTKLKHYERLSSTIH---RESDRVSPGGPDP 74 (77)
Q Consensus 36 s~~lLrelg~~~sk~k~~~r~~~~~~---~~s~RlSPGGPDP 74 (77)
++..|..||+...+.... ..... .+..+=+|+||=|
T Consensus 85 A~~AL~~Lg~~~~~~~~~---~~~~~~~~~~~~~~~P~~~~~ 123 (128)
T d1whna_ 85 AIVCLRSQGLPEGRLGEE---SPSLNKRKREAPDQDPGGPRS 123 (128)
T ss_dssp HHHHHHHHTCSSSTTTSC---CCCCCCCCCCCCCSSCCCSCC
T ss_pred HHHHHHHhCCCCCCcccc---chhhhhhhhccCCCCCCCCCC
Confidence 456889998765432221 12111 4677888999854
No 9
>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}
Probab=13.08 E-value=42 Score=22.39 Aligned_cols=20 Identities=35% Similarity=0.600 Sum_probs=16.2
Q ss_pred CHHHHHHHHhhhhhhhhhhc
Q 039013 35 DSQLLLRELGFDLTKLKHYE 54 (77)
Q Consensus 35 ~s~~lLrelg~~~sk~k~~~ 54 (77)
+.+-+|.||||+.++.+..+
T Consensus 403 ht~eIL~elG~~~~eI~~L~ 422 (427)
T d2vjma1 403 HTDEVLKELGLDDAKIKELH 422 (427)
T ss_dssp THHHHHHHTTCCHHHHHHHH
T ss_pred cHHHHHHHcCCCHHHHHHHH
Confidence 56679999999999888743
No 10
>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]}
Probab=11.47 E-value=45 Score=22.21 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=15.4
Q ss_pred CHHHHHHHHhhhhhhhhhh
Q 039013 35 DSQLLLRELGFDLTKLKHY 53 (77)
Q Consensus 35 ~s~~lLrelg~~~sk~k~~ 53 (77)
+++-+|+||||+..+.+.-
T Consensus 392 ht~eIL~elG~s~~~I~~L 410 (417)
T d1q7ea_ 392 HTAAVLQELGYSDDEIAAM 410 (417)
T ss_dssp THHHHHHHTTCCHHHHHHH
T ss_pred cHHHHHHHcCCCHHHHHHH
Confidence 5677999999998877663
Done!