Query 039014
Match_columns 139
No_of_seqs 165 out of 288
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 08:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_Q 40S ribosomal protein S 100.0 1.3E-76 4.3E-81 456.5 8.9 125 1-125 1-125 (141)
2 2xzm_V RPS17E; ribosome, trans 100.0 9.1E-75 3.1E-79 441.5 9.7 125 1-125 1-125 (130)
3 3u5c_R RP51A, 40S ribosomal pr 100.0 8.1E-73 2.8E-77 433.2 9.1 125 1-126 1-129 (136)
4 3j20_S 30S ribosomal protein S 100.0 6.1E-40 2.1E-44 226.0 4.6 66 1-66 1-66 (67)
5 1rq6_A 30S ribosomal protein S 100.0 3.9E-37 1.3E-41 209.4 3.5 62 1-62 1-62 (62)
6 1wyu_A Glycine dehydrogenase ( 31.3 18 0.0006 29.1 1.4 19 99-117 8-26 (438)
7 3lvh_D LCB, clathrin light cha 22.6 19 0.00064 29.1 0.1 53 10-62 128-180 (205)
8 2pl3_A Probable ATP-dependent 21.0 64 0.0022 23.3 2.7 49 70-118 1-52 (236)
9 2fi0_A Conserved domain protei 18.4 14 0.00048 24.4 -1.3 23 94-116 17-39 (81)
10 2k53_A A3DK08 protein; NESG, C 16.8 39 0.0013 22.3 0.6 20 94-113 11-30 (76)
No 1
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-76 Score=456.49 Aligned_cols=125 Identities=77% Similarity=1.172 Sum_probs=123.8
Q ss_pred CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceeccchHHHhh
Q 039014 1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER 80 (139)
Q Consensus 1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriqrgpvrGisiklqEEerer 80 (139)
||+||||+||++|++|||+||++||+|||+||++|+|+|+||||+|||+||||||||||+||+|||||||||||||||||
T Consensus 1 MG~Vrtk~VKr~Ar~IiEkY~~~ft~DFetNK~vveeia~I~SKklRNkIAGYVThlmKriq~GpvrgisiklqEeERer 80 (141)
T 3iz6_Q 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEEERER 80 (141)
T ss_dssp CCCCCCSHHHHHHHHHHTTTCCCCSCCHHHHHHHHHHSSSCCCTTTHHHHHHHHHHHHHHHCSCCCCCSSCCSSCCCCCS
T ss_pred CCCcccHHHHHHHHHHHHHhhhhhcCcHHhhhHHHHHhccccchhhhhhhhheeeehhhccccCCccccceehhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccccccCcceechHHHHHHHHcCCCCCCCceeecCCCC
Q 039014 81 RMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSM 125 (139)
Q Consensus 81 rdnyvpe~S~ld~~~ieVD~~T~eMlk~l~~~~~~~~~v~~p~~~ 125 (139)
|||||||+|+||+|+|+|||||+||||+||||+|||++|+||+++
T Consensus 81 rdnyvpe~S~ld~~~ieVD~dT~eMlk~l~~~~~~~~~~~~~~~~ 125 (141)
T 3iz6_Q 81 RMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEVSA 125 (141)
T ss_dssp CSSSSCCCSEEEECCCCSSHHHHHHHHHTTTTCCSCEEEECCCSS
T ss_pred HhccCCccccccccceeECHHHHHHHHHcCCCCCCCceecCCccc
Confidence 999999999999999999999999999999999999999999864
No 2
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=100.00 E-value=9.1e-75 Score=441.49 Aligned_cols=125 Identities=65% Similarity=1.016 Sum_probs=120.8
Q ss_pred CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceeccchHHHhh
Q 039014 1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER 80 (139)
Q Consensus 1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriqrgpvrGisiklqEEerer 80 (139)
||+|||++||++|++|||+||++||+|||+||++|+|+|+||||+|||+||||||||||++|+|||||||||||||||||
T Consensus 1 MG~Vrtk~VKr~a~~liEkY~~~ft~DFe~NK~vv~eia~I~SKklRNkIAGYVThlmkriq~gpvrgis~klqEeerer 80 (130)
T 2xzm_V 1 MGRVRTKTVKRAAKSLIEHYYSKLTNDFHFNKKILSEVAQVPSKRLRNKIAGFATHLMKRIQKGPVRGISLKVQEEERER 80 (130)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHSBCCSHHHHHHHHHHHHHHHHHTTTSCCTTCCCTTTTHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhhhcCCHHHhhHHHHHHccCCChhheecccchhhhHhhhcccCcccccccchhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccccccCcceechHHHHHHHHcCCCCCCCceeecCCCC
Q 039014 81 RMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSM 125 (139)
Q Consensus 81 rdnyvpe~S~ld~~~ieVD~~T~eMlk~l~~~~~~~~~v~~p~~~ 125 (139)
|||||||+|+||+++|+|||||+||||+||||++||++|+||+++
T Consensus 81 rd~yvPe~S~ld~~~i~vD~~t~emlk~l~~~~~~~~~~~~~~~~ 125 (130)
T 2xzm_V 81 RLDYVPEKSIIDIEKVTIDNETKEMLKKLGYQNIPGLVSASAPAN 125 (130)
T ss_dssp TTSCCCSSCSSCSSSCCBCHHHHHHHHHHTCSSSSCCBCCCC---
T ss_pred hhccCCcccccccceeEECHHHHHHHHHcCCCCCCCceecCCCCc
Confidence 999999999999999999999999999999999999999999864
No 3
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Probab=100.00 E-value=8.1e-73 Score=433.23 Aligned_cols=125 Identities=58% Similarity=0.880 Sum_probs=114.6
Q ss_pred CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceeccchHHHhh
Q 039014 1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER 80 (139)
Q Consensus 1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriqrgpvrGisiklqEEerer 80 (139)
||+||||+||++|++|||+||++||+|||+||++|+|+|+||||+|||+|||||||||||||+|||||||||||||||||
T Consensus 1 MG~Vrtk~VKr~Ar~IiEkY~~~ft~DFetNK~vveeia~I~SKklRNkIAGYVThLmKriq~GpvrgisiklqEeERer 80 (136)
T 3u5c_R 1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERER 80 (136)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCCSCHHHHHHHHHHHEECSCHHHHHHHHHHHHHHHHHHTTSCBTTBCCSHHHHHHHT
T ss_pred CCCccchHHHHHHHHHHHHhhhhhcCcHHhhhHHHHHhhcccchhheeehhhhhhhhhcccccCCcccceeehhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccccccC----cceechHHHHHHHHcCCCCCCCceeecCCCCC
Q 039014 81 RMDFVPDESAIKTD----EIKVDKETLDMLAALGMSDISGLVEVEPQSMI 126 (139)
Q Consensus 81 rdnyvpe~S~ld~~----~ieVD~~T~eMlk~l~~~~~~~~~v~~p~~~~ 126 (139)
|||||||+|+||++ +|+|||||+||||+|||+ |||++|+.|....
T Consensus 81 rdnyvpe~S~ld~~~~~~~ieVD~~T~~mlk~l~~~-~~~~~~~~~~~~~ 129 (136)
T 3u5c_R 81 KDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLK-LPLSVINVSAQRD 129 (136)
T ss_dssp TCCCCSSCC-----CCSSSCCBCHHHHHHHHHHCCC-CCCCBCCCCC---
T ss_pred hhccCCcchhhcccccCCceEEChHHHHHHHHcCCC-CCcceeccccccc
Confidence 99999999999998 899999999999999998 9999998876443
No 4
>3j20_S 30S ribosomal protein S17E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=6.1e-40 Score=226.03 Aligned_cols=66 Identities=35% Similarity=0.691 Sum_probs=65.3
Q ss_pred CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhhcCcc
Q 039014 1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66 (139)
Q Consensus 1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriqrgpv 66 (139)
||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+||||||||||++|+||.
T Consensus 1 MG~vr~k~VKr~a~~liekY~~~~t~DF~~NK~vv~eia~i~SKklRNkIAGYvT~l~k~~~~g~~ 66 (67)
T 3j20_S 1 MGKIRQGFIKRVARELVNKYPNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTKLVRMKMEGKI 66 (67)
T ss_dssp CCCCCCHHHHHHHHHHHHHSGGGCCSCHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCcchHHHHHHHHHHHHHhhhhhcccHHHhhHHHHHHhcccchhhhHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999995
No 5
>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.15.1
Probab=100.00 E-value=3.9e-37 Score=209.39 Aligned_cols=62 Identities=42% Similarity=0.682 Sum_probs=60.7
Q ss_pred CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhh
Q 039014 1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQ 62 (139)
Q Consensus 1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriq 62 (139)
||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+||||||||||+++
T Consensus 1 MG~vr~k~iK~~a~~liekY~~~~t~DF~~NK~~v~e~a~i~SK~lRNkIAGYvT~l~k~~~ 62 (62)
T 1rq6_A 1 MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQQK 62 (62)
T ss_dssp CCCCCCHHHHHHHHHHHTTSCCCCCCCHHHHHHHHHTTCCCSSTTHHHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHHHHHhHhHhcCCHHHhhHHHHHHcccccHhHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999863
No 6
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=31.35 E-value=18 Score=29.05 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=15.9
Q ss_pred chHHHHHHHHcCCCCCCCc
Q 039014 99 DKETLDMLAALGMSDISGL 117 (139)
Q Consensus 99 D~~T~eMlk~l~~~~~~~~ 117 (139)
|.|.++||+.+|+.++.-+
T Consensus 8 ~~~~~~ml~~~g~~~~~~~ 26 (438)
T 1wyu_A 8 EEEIREMLRRVGAASLEDL 26 (438)
T ss_dssp HHHHHHHHHHHTCSSTGGG
T ss_pred HHHHHHHHHHcCCCCHHHH
Confidence 5689999999999987543
No 7
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=22.57 E-value=19 Score=29.05 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhh
Q 039014 10 KKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQ 62 (139)
Q Consensus 10 Kr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriq 62 (139)
+.-|+.=|+.+|.+....-+.||.--..-..-=-+..-.-++|||||+-....
T Consensus 128 rekAkKeLddwY~~yneqlEK~ka~NR~aeeeFlaqrd~~~~Gyv~~~~~~~~ 180 (205)
T 3lvh_D 128 REKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIXXXXXXXXXXX 180 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSTTTSSHHHHHHHCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCccchhhhhhcccccccc
Confidence 34455556666665555555444322100000001112237999999876554
No 8
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=21.01 E-value=64 Score=23.27 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=30.1
Q ss_pred eeccchHHHh-hccCCCCCc--cccccCcceechHHHHHHHHcCCCCCCCce
Q 039014 70 SLKLQEEERE-RRMDFVPDE--SAIKTDEIKVDKETLDMLAALGMSDISGLV 118 (139)
Q Consensus 70 siklqEEere-rrdnyvpe~--S~ld~~~ieVD~~T~eMlk~l~~~~~~~~~ 118 (139)
|+++++++=+ -+++|.+.. ...+-+...++++..+.|+.+||..+...|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q 52 (236)
T 2pl3_A 1 SMQVERESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQ 52 (236)
T ss_dssp CCHHHHHHHHHHHHTTTTCCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHH
T ss_pred CccccHhHHHHHHhccccCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHH
Confidence 4566654333 355555421 112234567899999999999998766444
No 9
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=18.44 E-value=14 Score=24.43 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=19.9
Q ss_pred CcceechHHHHHHHHcCCCCCCC
Q 039014 94 DEIKVDKETLDMLAALGMSDISG 116 (139)
Q Consensus 94 ~~ieVD~~T~eMlk~l~~~~~~~ 116 (139)
|+++-+|++.+.|..+||+++.+
T Consensus 17 elv~~~P~~~~vl~~~G~~~l~~ 39 (81)
T 2fi0_A 17 EVVDKHPEVLEILVELGFKPLAN 39 (81)
T ss_dssp HHHHHCGGGHHHHTTTTCGGGGS
T ss_pred HHHHHCHHHHHHHHHcCCccccC
Confidence 46888999999999999998754
No 10
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=16.84 E-value=39 Score=22.29 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=18.2
Q ss_pred CcceechHHHHHHHHcCCCC
Q 039014 94 DEIKVDKETLDMLAALGMSD 113 (139)
Q Consensus 94 ~~ieVD~~T~eMlk~l~~~~ 113 (139)
|++.-+|+|.+.|..+|+++
T Consensus 11 eIv~~~P~~~~vf~~~G~~C 30 (76)
T 2k53_A 11 DVLQMDRGTAPIFINNGMHC 30 (76)
T ss_dssp HHHHHCGGGHHHHHHTTCCC
T ss_pred HHHHHCHHHHHHHHHcCCCC
Confidence 57889999999999999986
Done!