Query 039015
Match_columns 685
No_of_seqs 455 out of 2819
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:29:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 8.6E-28 1.9E-32 292.1 32.7 282 377-662 11-312 (2102)
2 PLN03200 cellulose synthase-in 100.0 4.3E-26 9.4E-31 277.4 31.9 282 378-665 445-767 (2102)
3 KOG4224 Armadillo repeat prote 99.9 3.7E-25 8E-30 222.7 20.6 277 380-663 168-447 (550)
4 KOG4224 Armadillo repeat prote 99.9 7.2E-25 1.6E-29 220.6 20.2 279 381-665 128-408 (550)
5 KOG0166 Karyopherin (importin) 99.9 1.9E-24 4.1E-29 232.6 24.2 281 379-662 109-393 (514)
6 KOG0166 Karyopherin (importin) 99.9 5.5E-21 1.2E-25 206.0 24.3 287 379-668 152-442 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 2.7E-21 5.9E-26 193.5 14.6 276 379-661 114-397 (526)
8 PF05804 KAP: Kinesin-associat 99.8 8.6E-18 1.9E-22 190.9 28.9 281 378-665 289-652 (708)
9 COG5064 SRP1 Karyopherin (impo 99.8 2E-18 4.3E-23 173.1 19.1 278 379-662 157-443 (526)
10 PF05804 KAP: Kinesin-associat 99.8 1.4E-17 3.1E-22 189.1 27.1 255 393-661 263-519 (708)
11 PF04564 U-box: U-box domain; 99.7 2.1E-18 4.6E-23 141.1 5.3 72 277-348 1-72 (73)
12 KOG1048 Neural adherens juncti 99.7 2.2E-15 4.7E-20 167.6 26.1 286 379-668 233-690 (717)
13 KOG4199 Uncharacterized conser 99.6 8.9E-14 1.9E-18 139.9 26.6 288 382-673 148-457 (461)
14 PF04826 Arm_2: Armadillo-like 99.6 4.4E-14 9.5E-19 143.5 22.5 236 380-627 13-252 (254)
15 KOG2122 Beta-catenin-binding p 99.6 1.5E-14 3.3E-19 166.2 18.9 263 396-664 315-603 (2195)
16 KOG4199 Uncharacterized conser 99.6 3E-13 6.5E-18 136.2 23.5 271 389-665 117-406 (461)
17 smart00504 Ubox Modified RING 99.5 5.7E-15 1.2E-19 117.7 5.7 63 280-343 1-63 (63)
18 PF04826 Arm_2: Armadillo-like 99.5 9.3E-13 2E-17 133.9 19.8 197 417-620 8-207 (254)
19 KOG1048 Neural adherens juncti 99.4 1.1E-11 2.4E-16 138.4 22.5 249 379-630 275-694 (717)
20 PF10508 Proteasom_PSMB: Prote 99.4 1.2E-10 2.5E-15 131.2 27.7 275 379-660 77-364 (503)
21 KOG4500 Rho/Rac GTPase guanine 99.3 2E-10 4.3E-15 119.4 20.2 266 379-646 87-458 (604)
22 KOG1222 Kinesin associated pro 99.3 5.2E-10 1.1E-14 117.5 22.7 280 378-664 303-665 (791)
23 KOG2122 Beta-catenin-binding p 99.3 4.8E-11 1E-15 138.0 14.2 226 394-621 366-604 (2195)
24 PF10508 Proteasom_PSMB: Prote 99.2 6.7E-09 1.5E-13 117.0 26.7 273 384-665 43-322 (503)
25 KOG1222 Kinesin associated pro 99.2 3.9E-10 8.5E-15 118.4 15.0 191 436-633 278-468 (791)
26 cd00020 ARM Armadillo/beta-cat 99.2 4.1E-10 9E-15 101.1 13.0 117 416-534 2-120 (120)
27 PF15227 zf-C3HC4_4: zinc fing 99.1 2.2E-11 4.7E-16 87.8 3.0 39 283-321 1-42 (42)
28 cd00020 ARM Armadillo/beta-cat 99.1 7.7E-10 1.7E-14 99.3 13.4 117 457-576 2-120 (120)
29 PLN03208 E3 ubiquitin-protein 99.1 3.6E-11 7.9E-16 114.3 4.0 60 276-335 14-88 (193)
30 TIGR00599 rad18 DNA repair pro 99.1 1.2E-10 2.7E-15 123.9 6.2 72 276-348 22-93 (397)
31 PRK09687 putative lyase; Provi 99.0 4.7E-08 1E-12 101.7 20.0 232 375-658 19-278 (280)
32 KOG0287 Postreplication repair 98.9 3E-10 6.5E-15 113.9 2.0 71 276-347 19-89 (442)
33 PF03224 V-ATPase_H_N: V-ATPas 98.9 1.8E-08 3.9E-13 107.0 14.9 232 422-656 56-308 (312)
34 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.5E-09 3.2E-14 77.3 3.1 38 283-321 1-39 (39)
35 PF03224 V-ATPase_H_N: V-ATPas 98.8 1.2E-07 2.6E-12 100.7 18.0 212 384-597 63-292 (312)
36 cd00256 VATPase_H VATPase_H, r 98.8 1.7E-06 3.7E-11 93.9 25.4 273 384-660 106-423 (429)
37 KOG2160 Armadillo/beta-catenin 98.8 4.8E-07 1E-11 93.8 20.2 186 389-577 93-283 (342)
38 KOG0946 ER-Golgi vesicle-tethe 98.8 1.7E-06 3.6E-11 96.6 25.0 261 379-645 22-327 (970)
39 KOG0823 Predicted E3 ubiquitin 98.8 2.9E-09 6.2E-14 103.0 2.9 59 278-336 45-105 (230)
40 PF14835 zf-RING_6: zf-RING of 98.8 2.2E-09 4.8E-14 82.4 1.2 59 279-340 6-65 (65)
41 PF00097 zf-C3HC4: Zinc finger 98.7 1.4E-08 2.9E-13 73.3 3.4 39 283-321 1-41 (41)
42 PF13445 zf-RING_UBOX: RING-ty 98.7 9.4E-09 2E-13 74.1 2.4 36 283-319 1-43 (43)
43 PRK09687 putative lyase; Provi 98.6 1.4E-06 3E-11 90.7 17.1 196 380-614 55-278 (280)
44 KOG0317 Predicted E3 ubiquitin 98.6 2.4E-08 5.2E-13 99.5 3.8 54 276-330 235-288 (293)
45 PF13920 zf-C3HC4_3: Zinc fing 98.6 2.5E-08 5.5E-13 75.2 3.0 46 280-326 2-48 (50)
46 PRK13800 putative oxidoreducta 98.6 5.3E-06 1.2E-10 100.2 23.8 228 379-660 621-865 (897)
47 COG5432 RAD18 RING-finger-cont 98.6 2.4E-08 5.3E-13 98.4 2.9 70 276-346 21-90 (391)
48 KOG0168 Putative ubiquitin fus 98.6 5.3E-06 1.2E-10 93.3 20.6 258 380-645 168-438 (1051)
49 PHA02929 N1R/p28-like protein; 98.6 5.1E-08 1.1E-12 97.2 4.3 48 278-326 172-227 (238)
50 KOG4646 Uncharacterized conser 98.5 6.2E-07 1.3E-11 79.9 10.2 132 379-513 16-149 (173)
51 PF13639 zf-RING_2: Ring finge 98.5 3.6E-08 7.7E-13 72.3 2.1 40 282-322 2-44 (44)
52 KOG0320 Predicted E3 ubiquitin 98.5 5.6E-08 1.2E-12 90.0 3.7 55 276-331 127-183 (187)
53 PRK13800 putative oxidoreducta 98.5 1.2E-05 2.6E-10 97.2 24.7 228 379-659 652-896 (897)
54 KOG4500 Rho/Rac GTPase guanine 98.5 2.2E-05 4.7E-10 82.6 21.8 271 381-657 225-514 (604)
55 KOG4642 Chaperone-dependent E3 98.5 2.3E-06 5E-11 83.6 13.7 76 276-351 207-282 (284)
56 cd00162 RING RING-finger (Real 98.4 1.8E-07 4E-12 68.3 3.8 43 282-324 1-44 (45)
57 KOG2160 Armadillo/beta-catenin 98.4 1.1E-05 2.3E-10 84.0 17.3 185 432-619 94-283 (342)
58 PF01602 Adaptin_N: Adaptin N 98.4 1.5E-05 3.2E-10 91.0 19.6 101 379-490 79-179 (526)
59 PF11789 zf-Nse: Zinc-finger o 98.4 1.6E-07 3.5E-12 72.3 1.7 44 279-322 10-55 (57)
60 smart00184 RING Ring finger. E 98.4 4E-07 8.7E-12 64.1 3.6 39 283-321 1-39 (39)
61 KOG2177 Predicted E3 ubiquitin 98.3 2.6E-07 5.7E-12 97.9 3.7 71 276-349 9-79 (386)
62 cd00256 VATPase_H VATPase_H, r 98.3 8.1E-05 1.8E-09 81.0 22.7 217 380-598 54-286 (429)
63 KOG2973 Uncharacterized conser 98.3 0.00015 3.3E-09 73.6 22.3 275 381-664 5-317 (353)
64 KOG3678 SARM protein (with ste 98.3 2.2E-05 4.8E-10 83.1 16.7 260 379-662 180-452 (832)
65 KOG4646 Uncharacterized conser 98.3 6.2E-06 1.4E-10 73.6 10.2 124 461-586 15-139 (173)
66 PHA02926 zinc finger-like prot 98.3 5.6E-07 1.2E-11 86.5 3.6 51 276-326 166-230 (242)
67 KOG0311 Predicted E3 ubiquitin 98.2 1.9E-07 4.1E-12 95.3 -0.2 71 276-346 39-111 (381)
68 KOG2171 Karyopherin (importin) 98.2 0.00028 6E-09 82.9 25.2 277 381-665 161-507 (1075)
69 PF01602 Adaptin_N: Adaptin N 98.2 9E-05 1.9E-09 84.6 21.5 254 378-661 113-368 (526)
70 KOG0978 E3 ubiquitin ligase in 98.2 1.6E-05 3.4E-10 89.8 14.2 57 276-332 639-695 (698)
71 KOG2164 Predicted E3 ubiquitin 98.2 7.4E-07 1.6E-11 95.6 3.2 72 278-349 184-263 (513)
72 TIGR00570 cdk7 CDK-activating 98.2 1.7E-06 3.7E-11 88.7 5.6 62 279-340 2-72 (309)
73 KOG2660 Locus-specific chromos 98.2 8.5E-07 1.9E-11 90.2 3.0 66 276-342 11-81 (331)
74 PF05536 Neurochondrin: Neuroc 98.2 6.6E-05 1.4E-09 85.2 18.3 197 463-667 6-215 (543)
75 PF14634 zf-RING_5: zinc-RING 98.2 1.4E-06 3.1E-11 63.7 3.2 41 282-323 1-44 (44)
76 KOG0168 Putative ubiquitin fus 98.1 4.1E-05 9E-10 86.4 15.4 147 504-656 210-358 (1051)
77 COG5574 PEX10 RING-finger-cont 98.1 1.2E-06 2.6E-11 86.5 3.0 54 276-329 211-265 (271)
78 KOG1293 Proteins containing ar 98.0 0.00025 5.4E-09 78.6 18.2 201 387-589 339-547 (678)
79 KOG1789 Endocytosis protein RM 98.0 0.0004 8.7E-09 79.8 19.2 259 381-645 1773-2142(2235)
80 PF12678 zf-rbx1: RING-H2 zinc 98.0 6.1E-06 1.3E-10 67.4 3.7 39 283-322 22-73 (73)
81 KOG2734 Uncharacterized conser 98.0 0.00099 2.1E-08 70.7 20.6 220 398-621 103-349 (536)
82 KOG2171 Karyopherin (importin) 98.0 0.00025 5.4E-09 83.2 17.6 246 380-628 349-604 (1075)
83 COG5113 UFD2 Ubiquitin fusion 97.9 6.6E-05 1.4E-09 82.0 11.4 73 276-349 850-923 (929)
84 KOG2973 Uncharacterized conser 97.9 0.0015 3.2E-08 66.6 20.1 236 376-619 41-316 (353)
85 PF05536 Neurochondrin: Neuroc 97.9 0.00057 1.2E-08 77.6 19.1 234 380-618 6-261 (543)
86 KOG1293 Proteins containing ar 97.9 0.00025 5.5E-09 78.6 15.5 275 384-662 237-533 (678)
87 KOG2759 Vacuolar H+-ATPase V1 97.9 0.0032 6.9E-08 66.9 22.4 272 382-660 117-436 (442)
88 PF00514 Arm: Armadillo/beta-c 97.9 1.1E-05 2.4E-10 57.9 3.0 40 410-449 1-40 (41)
89 PTZ00429 beta-adaptin; Provisi 97.9 0.0047 1E-07 72.4 25.9 246 380-655 33-278 (746)
90 COG5222 Uncharacterized conser 97.8 1.5E-05 3.2E-10 79.3 4.4 66 281-346 275-342 (427)
91 KOG2042 Ubiquitin fusion degra 97.8 6.3E-05 1.4E-09 87.4 10.0 72 276-348 866-938 (943)
92 KOG2759 Vacuolar H+-ATPase V1 97.8 0.00083 1.8E-08 71.1 17.2 235 381-619 158-439 (442)
93 PTZ00429 beta-adaptin; Provisi 97.8 0.0073 1.6E-07 70.8 26.5 147 379-535 140-286 (746)
94 PF14664 RICTOR_N: Rapamycin-i 97.8 0.0073 1.6E-07 65.4 24.2 273 382-662 28-364 (371)
95 PF10165 Ric8: Guanine nucleot 97.8 0.0026 5.6E-08 70.8 21.3 264 399-664 1-339 (446)
96 KOG4159 Predicted E3 ubiquitin 97.7 2.8E-05 6E-10 83.5 3.7 70 276-346 80-154 (398)
97 KOG2023 Nuclear transport rece 97.6 0.0011 2.4E-08 73.5 15.4 271 380-664 129-465 (885)
98 KOG0212 Uncharacterized conser 97.6 0.001 2.3E-08 72.5 15.0 234 379-619 208-445 (675)
99 TIGR02270 conserved hypothetic 97.6 0.0043 9.4E-08 67.9 19.8 220 380-663 55-297 (410)
100 KOG3678 SARM protein (with ste 97.6 0.00086 1.9E-08 71.3 12.7 175 413-591 172-351 (832)
101 KOG0297 TNF receptor-associate 97.5 4.8E-05 1E-09 82.8 3.3 67 276-343 17-85 (391)
102 PF00514 Arm: Armadillo/beta-c 97.5 0.00018 3.9E-09 51.6 4.6 40 493-533 1-40 (41)
103 PF12861 zf-Apc11: Anaphase-pr 97.5 0.00013 2.7E-09 60.3 3.9 49 278-326 30-82 (85)
104 KOG4628 Predicted E3 ubiquitin 97.4 6.7E-05 1.5E-09 78.4 2.7 47 281-327 230-279 (348)
105 KOG0946 ER-Golgi vesicle-tethe 97.4 0.0094 2E-07 67.6 19.4 239 381-620 63-348 (970)
106 KOG4413 26S proteasome regulat 97.4 0.0075 1.6E-07 61.9 16.8 259 386-650 89-364 (524)
107 KOG0824 Predicted E3 ubiquitin 97.4 6.9E-05 1.5E-09 75.4 2.0 48 281-328 8-55 (324)
108 KOG2734 Uncharacterized conser 97.4 0.024 5.2E-07 60.6 20.3 239 379-620 125-402 (536)
109 PF13646 HEAT_2: HEAT repeats; 97.4 0.001 2.2E-08 56.1 8.5 87 381-488 1-88 (88)
110 PF12348 CLASP_N: CLASP N term 97.4 0.002 4.4E-08 65.0 12.2 182 388-577 16-207 (228)
111 KOG2879 Predicted E3 ubiquitin 97.3 0.00017 3.8E-09 71.6 4.1 51 276-326 235-287 (298)
112 PF10165 Ric8: Guanine nucleot 97.3 0.01 2.2E-07 66.1 18.3 232 390-623 43-342 (446)
113 PF05659 RPW8: Arabidopsis bro 97.3 0.0036 7.8E-08 58.4 12.1 95 44-141 26-121 (147)
114 KOG0802 E3 ubiquitin ligase [P 97.3 0.00011 2.3E-09 83.9 2.1 49 278-327 289-342 (543)
115 COG5152 Uncharacterized conser 97.3 8.6E-05 1.9E-09 69.8 1.1 45 281-326 197-241 (259)
116 KOG1813 Predicted E3 ubiquitin 97.3 0.00013 2.8E-09 73.3 2.3 59 280-340 241-299 (313)
117 PF14664 RICTOR_N: Rapamycin-i 97.3 0.021 4.6E-07 61.8 19.2 254 403-663 7-270 (371)
118 KOG1789 Endocytosis protein RM 97.2 0.065 1.4E-06 62.6 23.3 138 395-535 1741-1884(2235)
119 PF13646 HEAT_2: HEAT repeats; 97.2 0.0013 2.8E-08 55.5 7.8 88 464-572 1-88 (88)
120 KOG1002 Nucleotide excision re 97.2 0.0003 6.6E-09 75.3 4.2 54 276-329 532-589 (791)
121 PF12348 CLASP_N: CLASP N term 97.1 0.0029 6.3E-08 63.8 10.6 188 475-669 19-213 (228)
122 smart00185 ARM Armadillo/beta- 97.1 0.00071 1.5E-08 48.1 4.3 40 411-450 2-41 (41)
123 COG5243 HRD1 HRD ubiquitin lig 97.1 0.00035 7.7E-09 71.9 3.5 47 278-325 285-344 (491)
124 TIGR02270 conserved hypothetic 97.1 0.055 1.2E-06 59.4 20.7 151 421-616 54-205 (410)
125 PF11841 DUF3361: Domain of un 97.1 0.012 2.7E-07 55.0 12.9 129 499-629 6-142 (160)
126 COG1413 FOG: HEAT repeat [Ener 97.0 0.11 2.3E-06 55.8 21.9 184 379-614 43-238 (335)
127 COG5540 RING-finger-containing 97.0 0.00037 8E-09 70.0 2.6 48 280-327 323-373 (374)
128 KOG4413 26S proteasome regulat 96.9 0.1 2.2E-06 53.8 18.7 235 380-618 129-377 (524)
129 KOG1059 Vesicle coat complex A 96.8 0.15 3.2E-06 57.7 20.7 255 377-659 179-440 (877)
130 COG5096 Vesicle coat complex, 96.7 0.038 8.3E-07 64.0 16.1 168 388-577 28-196 (757)
131 smart00185 ARM Armadillo/beta- 96.6 0.0043 9.3E-08 44.0 4.9 40 494-534 2-41 (41)
132 COG5369 Uncharacterized conser 96.6 0.013 2.9E-07 63.7 10.6 263 395-661 405-740 (743)
133 KOG0212 Uncharacterized conser 96.5 0.1 2.2E-06 57.5 16.8 272 385-663 130-407 (675)
134 KOG0826 Predicted E3 ubiquitin 96.5 0.0022 4.8E-08 65.5 3.7 50 276-326 296-346 (357)
135 COG1413 FOG: HEAT repeat [Ener 96.5 0.16 3.4E-06 54.5 18.2 163 420-619 42-210 (335)
136 KOG1242 Protein containing ada 96.5 0.15 3.2E-06 57.0 17.8 269 380-662 135-444 (569)
137 COG5369 Uncharacterized conser 96.4 0.035 7.5E-07 60.6 12.1 200 439-643 407-618 (743)
138 KOG4367 Predicted Zn-finger pr 96.4 0.0013 2.8E-08 68.9 1.4 35 278-312 2-36 (699)
139 KOG2023 Nuclear transport rece 96.4 0.068 1.5E-06 59.9 14.4 173 420-595 127-306 (885)
140 KOG3036 Protein involved in ce 96.4 0.78 1.7E-05 45.9 20.2 233 381-618 28-291 (293)
141 KOG1077 Vesicle coat complex A 96.3 0.68 1.5E-05 52.5 21.5 275 375-671 107-442 (938)
142 KOG4172 Predicted E3 ubiquitin 96.2 0.00096 2.1E-08 49.4 -0.4 46 281-326 8-54 (62)
143 KOG0804 Cytoplasmic Zn-finger 96.2 0.0015 3.3E-08 69.3 0.6 48 276-326 171-222 (493)
144 PF11793 FANCL_C: FANCL C-term 96.2 0.0012 2.7E-08 53.3 -0.1 47 280-326 2-66 (70)
145 KOG0289 mRNA splicing factor [ 96.1 0.013 2.9E-07 62.1 7.2 51 281-332 1-52 (506)
146 KOG1059 Vesicle coat complex A 96.1 1.3 2.8E-05 50.6 22.8 226 378-628 143-373 (877)
147 PF04078 Rcd1: Cell differenti 96.1 0.17 3.8E-06 51.2 14.7 194 392-586 8-228 (262)
148 KOG1248 Uncharacterized conser 96.1 0.27 5.8E-06 58.8 18.2 218 431-662 664-898 (1176)
149 KOG1062 Vesicle coat complex A 96.1 0.32 7E-06 55.9 18.2 141 510-663 257-416 (866)
150 KOG1517 Guanine nucleotide bin 96.1 0.21 4.5E-06 58.8 16.8 221 397-620 488-734 (1387)
151 KOG2259 Uncharacterized conser 96.1 0.18 3.8E-06 56.7 15.6 225 381-626 200-482 (823)
152 KOG3039 Uncharacterized conser 96.0 0.0043 9.2E-08 60.7 2.8 54 278-332 219-276 (303)
153 PF04063 DUF383: Domain of unk 95.9 0.047 1E-06 53.4 9.5 123 433-555 7-156 (192)
154 KOG1242 Protein containing ada 95.9 0.23 5.1E-06 55.6 15.9 228 378-621 253-486 (569)
155 PF09759 Atx10homo_assoc: Spin 95.9 0.023 5E-07 49.3 6.4 65 396-460 3-70 (102)
156 KOG1734 Predicted RING-contain 95.9 0.0026 5.5E-08 63.1 0.5 58 276-333 220-288 (328)
157 COG5240 SEC21 Vesicle coat com 95.9 0.23 5E-06 54.9 15.2 248 380-664 265-557 (898)
158 PF04641 Rtf2: Rtf2 RING-finge 95.8 0.0069 1.5E-07 62.5 3.5 55 276-332 109-167 (260)
159 PF13513 HEAT_EZ: HEAT-like re 95.7 0.018 4E-07 43.9 4.7 55 477-532 1-55 (55)
160 COG5231 VMA13 Vacuolar H+-ATPa 95.7 0.5 1.1E-05 48.9 15.9 226 433-661 161-427 (432)
161 PF11841 DUF3361: Domain of un 95.7 0.15 3.3E-06 47.9 11.4 120 415-534 5-131 (160)
162 KOG3036 Protein involved in ce 95.5 0.66 1.4E-05 46.3 15.6 177 480-661 96-290 (293)
163 PF09759 Atx10homo_assoc: Spin 95.5 0.068 1.5E-06 46.4 7.6 59 563-622 2-63 (102)
164 KOG1039 Predicted E3 ubiquitin 95.4 0.008 1.7E-07 63.5 2.3 50 277-326 158-221 (344)
165 KOG1241 Karyopherin (importin) 95.4 0.62 1.3E-05 53.4 16.9 239 384-629 264-541 (859)
166 PF05004 IFRD: Interferon-rela 95.4 0.55 1.2E-05 49.7 16.0 184 430-618 52-257 (309)
167 KOG1241 Karyopherin (importin) 95.4 3.8 8.2E-05 47.3 22.9 274 379-664 129-479 (859)
168 KOG0213 Splicing factor 3b, su 95.4 1.4 3.1E-05 50.3 19.4 277 376-662 633-954 (1172)
169 smart00744 RINGv The RING-vari 95.4 0.019 4.2E-07 42.8 3.5 41 282-322 1-49 (49)
170 KOG0828 Predicted E3 ubiquitin 95.4 0.0085 1.8E-07 64.2 2.2 51 277-327 568-635 (636)
171 KOG1645 RING-finger-containing 95.4 0.0086 1.9E-07 63.0 2.2 60 280-339 4-69 (463)
172 PF04078 Rcd1: Cell differenti 95.3 0.61 1.3E-05 47.3 14.8 143 476-619 8-169 (262)
173 KOG2817 Predicted E3 ubiquitin 95.2 0.014 2.9E-07 61.7 3.1 50 276-325 330-384 (394)
174 KOG2259 Uncharacterized conser 95.2 0.17 3.7E-06 56.7 11.6 106 456-574 367-473 (823)
175 COG5194 APC11 Component of SCF 95.1 0.021 4.6E-07 46.0 3.1 47 279-326 30-81 (88)
176 PF13513 HEAT_EZ: HEAT-like re 95.1 0.054 1.2E-06 41.2 5.4 55 435-490 1-55 (55)
177 KOG2999 Regulator of Rac1, req 95.0 0.55 1.2E-05 51.9 14.6 163 463-628 84-252 (713)
178 KOG0213 Splicing factor 3b, su 94.9 0.5 1.1E-05 53.8 14.2 215 379-617 883-1106(1172)
179 KOG1517 Guanine nucleotide bin 94.9 0.35 7.7E-06 57.0 13.5 193 464-662 474-671 (1387)
180 KOG4692 Predicted E3 ubiquitin 94.9 0.034 7.4E-07 57.2 4.7 48 278-326 420-467 (489)
181 PF08569 Mo25: Mo25-like; Int 94.8 1.5 3.3E-05 46.8 17.2 220 416-644 71-308 (335)
182 KOG2611 Neurochondrin/leucine- 94.8 0.84 1.8E-05 49.7 14.8 126 468-597 17-161 (698)
183 PF04063 DUF383: Domain of unk 94.7 0.29 6.2E-06 47.9 10.5 122 519-643 9-157 (192)
184 KOG3800 Predicted E3 ubiquitin 94.7 0.022 4.8E-07 57.6 2.8 49 282-330 2-55 (300)
185 PF13764 E3_UbLigase_R4: E3 ub 94.7 3.1 6.8E-05 49.4 20.7 241 416-662 112-406 (802)
186 COG5219 Uncharacterized conser 94.6 0.014 3.1E-07 67.0 1.4 51 276-326 1465-1523(1525)
187 COG5181 HSH155 U2 snRNP splice 94.5 0.59 1.3E-05 52.2 13.3 147 423-576 606-759 (975)
188 KOG2611 Neurochondrin/leucine- 94.5 3.3 7.1E-05 45.3 18.5 127 426-555 16-161 (698)
189 KOG1785 Tyrosine kinase negati 94.4 0.017 3.7E-07 60.3 1.4 47 282-328 371-418 (563)
190 KOG1493 Anaphase-promoting com 94.4 0.021 4.5E-07 45.6 1.5 51 276-326 27-81 (84)
191 PF08569 Mo25: Mo25-like; Int 94.2 0.9 1.9E-05 48.5 13.9 225 379-619 76-312 (335)
192 KOG0827 Predicted E3 ubiquitin 94.2 0.028 6E-07 58.8 2.4 50 279-328 3-58 (465)
193 KOG0825 PHD Zn-finger protein 94.2 0.011 2.3E-07 66.7 -0.8 49 278-327 121-172 (1134)
194 COG5231 VMA13 Vacuolar H+-ATPa 94.1 2 4.4E-05 44.6 15.3 223 392-617 162-427 (432)
195 PF11698 V-ATPase_H_C: V-ATPas 94.0 0.13 2.8E-06 45.9 5.9 70 379-448 43-113 (119)
196 KOG1061 Vesicle coat complex A 94.0 0.71 1.5E-05 53.1 13.2 178 380-579 14-192 (734)
197 PF14668 RICTOR_V: Rapamycin-i 93.7 0.25 5.5E-06 40.1 6.6 67 522-588 4-70 (73)
198 KOG1062 Vesicle coat complex A 93.7 9.3 0.0002 44.5 21.0 250 375-645 138-453 (866)
199 PF02891 zf-MIZ: MIZ/SP-RING z 93.7 0.073 1.6E-06 39.9 3.1 44 281-324 3-50 (50)
200 KOG2979 Protein involved in DN 93.6 0.056 1.2E-06 53.9 3.2 47 278-324 174-222 (262)
201 KOG3039 Uncharacterized conser 93.5 0.049 1.1E-06 53.6 2.5 38 276-313 39-76 (303)
202 KOG4265 Predicted E3 ubiquitin 93.4 0.046 1E-06 57.1 2.3 49 278-327 288-337 (349)
203 PF14570 zf-RING_4: RING/Ubox 93.3 0.057 1.2E-06 39.8 2.0 43 283-325 1-47 (48)
204 PF14447 Prok-RING_4: Prokaryo 93.1 0.045 9.8E-07 41.2 1.3 46 280-328 7-52 (55)
205 KOG1824 TATA-binding protein-i 93.1 1.3 2.8E-05 52.0 13.3 248 377-642 45-307 (1233)
206 KOG1571 Predicted E3 ubiquitin 93.0 0.054 1.2E-06 56.6 2.1 47 276-326 301-347 (355)
207 KOG1077 Vesicle coat complex A 93.0 18 0.0004 41.6 21.5 213 396-621 306-553 (938)
208 KOG1061 Vesicle coat complex A 92.9 1.8 3.9E-05 49.9 13.9 167 378-555 120-289 (734)
209 COG5175 MOT2 Transcriptional r 92.8 0.068 1.5E-06 54.8 2.5 50 279-329 14-67 (480)
210 KOG1001 Helicase-like transcri 92.8 0.028 6E-07 65.2 -0.3 47 281-328 455-502 (674)
211 COG5096 Vesicle coat complex, 92.7 18 0.0004 42.6 22.0 139 381-534 57-195 (757)
212 PF08045 CDC14: Cell division 92.7 0.93 2E-05 46.2 10.4 95 395-489 107-204 (257)
213 KOG1824 TATA-binding protein-i 92.6 2.3 5.1E-05 50.0 14.4 267 383-665 9-289 (1233)
214 KOG4151 Myosin assembly protei 92.6 1.5 3.2E-05 50.8 12.8 192 449-650 491-687 (748)
215 COG5181 HSH155 U2 snRNP splice 92.6 2.5 5.3E-05 47.5 14.0 252 379-664 688-949 (975)
216 PF12755 Vac14_Fab1_bd: Vacuol 92.4 0.98 2.1E-05 39.0 8.8 69 589-661 28-96 (97)
217 PF06371 Drf_GBD: Diaphanous G 92.2 0.76 1.6E-05 44.6 9.0 109 380-491 67-186 (187)
218 KOG0567 HEAT repeat-containing 92.2 15 0.00032 37.5 19.5 197 420-661 66-279 (289)
219 KOG4185 Predicted E3 ubiquitin 92.1 0.12 2.7E-06 54.3 3.5 63 281-343 4-77 (296)
220 PF08045 CDC14: Cell division 92.1 1.3 2.9E-05 45.1 10.6 99 521-619 107-208 (257)
221 PF12717 Cnd1: non-SMC mitotic 91.9 6 0.00013 38.2 14.7 92 392-493 1-93 (178)
222 KOG1078 Vesicle coat complex C 91.8 4.6 9.9E-05 46.8 15.4 262 380-665 246-535 (865)
223 PF06371 Drf_GBD: Diaphanous G 91.7 0.58 1.3E-05 45.4 7.5 79 539-618 100-187 (187)
224 PF13764 E3_UbLigase_R4: E3 ub 91.5 19 0.00041 43.0 20.6 234 381-619 119-407 (802)
225 PF05290 Baculo_IE-1: Baculovi 91.3 0.2 4.4E-06 44.8 3.3 50 279-328 79-134 (140)
226 PF12717 Cnd1: non-SMC mitotic 91.0 9.7 0.00021 36.7 15.2 93 476-577 1-93 (178)
227 PF11701 UNC45-central: Myosin 90.8 0.92 2E-05 43.0 7.6 146 423-573 5-156 (157)
228 KOG3113 Uncharacterized conser 90.7 0.18 4E-06 49.9 2.7 52 278-332 109-164 (293)
229 KOG1060 Vesicle coat complex A 90.6 10 0.00022 44.2 16.4 210 381-619 37-247 (968)
230 PF08324 PUL: PUL domain; Int 90.0 1.7 3.7E-05 44.9 9.6 187 423-609 65-265 (268)
231 PF05004 IFRD: Interferon-rela 89.9 23 0.00049 37.6 17.9 192 466-664 47-259 (309)
232 KOG1058 Vesicle coat complex C 89.4 14 0.0003 42.9 16.2 26 593-619 322-347 (948)
233 PF11701 UNC45-central: Myosin 89.1 1 2.3E-05 42.6 6.5 147 463-614 4-155 (157)
234 COG5215 KAP95 Karyopherin (imp 89.1 45 0.00097 37.7 20.4 271 380-665 134-440 (858)
235 KOG4275 Predicted E3 ubiquitin 89.0 0.073 1.6E-06 53.7 -1.5 42 279-325 299-341 (350)
236 PF06025 DUF913: Domain of Unk 88.9 16 0.00035 39.8 16.4 83 392-474 122-208 (379)
237 PF12755 Vac14_Fab1_bd: Vacuol 88.9 1.7 3.8E-05 37.5 7.2 70 461-533 26-95 (97)
238 KOG0301 Phospholipase A2-activ 88.9 6.5 0.00014 44.8 13.2 168 385-558 550-728 (745)
239 KOG2114 Vacuolar assembly/sort 88.8 0.47 1E-05 54.8 4.5 41 279-323 839-880 (933)
240 PF12719 Cnd3: Nuclear condens 88.7 14 0.0003 38.9 15.4 190 421-619 26-234 (298)
241 KOG2930 SCF ubiquitin ligase, 88.6 0.3 6.6E-06 41.5 2.1 27 297-324 80-106 (114)
242 PF10367 Vps39_2: Vacuolar sor 88.5 0.72 1.6E-05 40.4 4.7 34 275-308 73-108 (109)
243 KOG1814 Predicted E3 ubiquitin 88.5 0.44 9.5E-06 50.7 3.7 34 280-313 184-220 (445)
244 KOG2999 Regulator of Rac1, req 88.4 6.3 0.00014 43.9 12.4 155 506-662 84-242 (713)
245 KOG0567 HEAT repeat-containing 88.3 18 0.0004 36.8 14.7 197 380-619 68-281 (289)
246 COG5109 Uncharacterized conser 88.3 0.29 6.3E-06 50.0 2.2 49 276-324 332-385 (396)
247 KOG3002 Zn finger protein [Gen 88.2 0.47 1E-05 49.6 3.7 61 276-343 44-105 (299)
248 COG5220 TFB3 Cdk activating ki 88.2 0.18 3.9E-06 49.4 0.6 48 279-326 9-64 (314)
249 KOG4151 Myosin assembly protei 87.9 8.9 0.00019 44.6 13.8 207 381-595 506-719 (748)
250 KOG2274 Predicted importin 9 [ 87.9 14 0.00031 43.6 15.4 223 432-662 461-689 (1005)
251 KOG1240 Protein kinase contain 87.8 17 0.00037 44.3 16.3 259 392-664 436-727 (1431)
252 PF02985 HEAT: HEAT repeat; I 87.5 0.64 1.4E-05 30.8 2.8 28 423-450 2-29 (31)
253 PF11707 Npa1: Ribosome 60S bi 87.5 25 0.00054 37.6 16.5 166 377-544 54-247 (330)
254 COG5215 KAP95 Karyopherin (imp 87.4 20 0.00043 40.3 15.5 227 388-621 230-482 (858)
255 KOG3161 Predicted E3 ubiquitin 87.3 0.27 5.9E-06 54.8 1.3 41 276-319 7-51 (861)
256 PF12031 DUF3518: Domain of un 87.1 1.1 2.4E-05 44.8 5.4 84 435-518 138-229 (257)
257 COG5209 RCD1 Uncharacterized p 87.0 8.2 0.00018 38.2 11.1 193 389-584 57-276 (315)
258 PF02985 HEAT: HEAT repeat; I 86.7 0.86 1.9E-05 30.2 3.1 29 506-534 1-29 (31)
259 PF12530 DUF3730: Protein of u 86.6 31 0.00068 34.9 15.9 130 389-533 11-150 (234)
260 PF05918 API5: Apoptosis inhib 86.6 17 0.00038 41.3 15.0 122 390-530 33-158 (556)
261 KOG1248 Uncharacterized conser 86.5 18 0.00039 44.0 15.6 230 389-628 664-908 (1176)
262 PF07814 WAPL: Wings apart-lik 86.5 26 0.00056 38.0 16.1 235 379-623 21-304 (361)
263 KOG4535 HEAT and armadillo rep 86.1 1.9 4.2E-05 47.0 6.9 184 433-620 403-605 (728)
264 KOG2062 26S proteasome regulat 86.0 44 0.00095 38.9 17.5 97 504-616 553-651 (929)
265 KOG2274 Predicted importin 9 [ 85.9 38 0.00082 40.3 17.3 227 390-626 461-697 (1005)
266 PF11698 V-ATPase_H_C: V-ATPas 85.3 2 4.4E-05 38.4 5.6 71 547-618 44-115 (119)
267 KOG1058 Vesicle coat complex C 85.2 84 0.0018 36.8 20.7 179 392-600 219-408 (948)
268 KOG0211 Protein phosphatase 2A 85.2 31 0.00068 40.9 16.8 192 375-575 232-426 (759)
269 PF12460 MMS19_C: RNAPII trans 85.1 16 0.00034 40.5 13.9 129 506-641 272-414 (415)
270 KOG0298 DEAD box-containing he 85.0 0.27 5.9E-06 59.2 -0.1 49 276-325 1149-1198(1394)
271 PF14225 MOR2-PAG1_C: Cell mor 84.9 24 0.00052 36.4 14.1 136 435-576 76-254 (262)
272 COG5209 RCD1 Uncharacterized p 84.8 3 6.4E-05 41.2 6.9 99 561-660 114-216 (315)
273 PF12460 MMS19_C: RNAPII trans 84.8 23 0.00049 39.2 15.0 185 380-578 190-396 (415)
274 KOG1967 DNA repair/transcripti 84.6 3 6.5E-05 49.1 7.9 184 425-612 819-1018(1030)
275 KOG1941 Acetylcholine receptor 84.3 0.44 9.6E-06 50.1 1.1 46 277-322 362-412 (518)
276 COG5240 SEC21 Vesicle coat com 84.2 38 0.00082 38.3 15.6 108 380-495 224-335 (898)
277 PF06025 DUF913: Domain of Unk 84.0 8.2 0.00018 42.1 10.8 185 398-599 3-207 (379)
278 KOG1060 Vesicle coat complex A 83.5 49 0.0011 38.8 16.6 196 424-652 38-236 (968)
279 PF14668 RICTOR_V: Rapamycin-i 83.3 4.1 9E-05 33.1 6.1 68 438-506 4-71 (73)
280 PF12719 Cnd3: Nuclear condens 83.2 21 0.00045 37.5 13.3 167 380-556 27-207 (298)
281 KOG4362 Transcriptional regula 83.1 0.44 9.6E-06 54.4 0.6 64 278-341 19-84 (684)
282 PF12031 DUF3518: Domain of un 82.8 4.2 9.2E-05 40.8 7.2 88 562-650 139-233 (257)
283 COG5627 MMS21 DNA repair prote 82.7 0.82 1.8E-05 44.9 2.2 59 280-338 189-251 (275)
284 PF08324 PUL: PUL domain; Int 81.7 17 0.00036 37.4 11.8 163 381-545 65-242 (268)
285 KOG4464 Signaling protein RIC- 81.2 88 0.0019 34.1 16.9 157 380-537 46-234 (532)
286 KOG1240 Protein kinase contain 81.1 44 0.00094 41.1 15.7 228 379-619 462-726 (1431)
287 KOG3665 ZYG-1-like serine/thre 81.0 31 0.00067 40.8 14.7 93 528-620 494-589 (699)
288 PF12252 SidE: Dot/Icm substra 79.9 79 0.0017 38.3 16.9 146 91-248 1014-1172(1439)
289 KOG2038 CAATT-binding transcri 79.6 28 0.00061 40.5 12.9 218 381-629 198-421 (988)
290 PRK14707 hypothetical protein; 79.5 1.4E+02 0.003 39.3 19.6 266 381-653 165-436 (2710)
291 KOG0883 Cyclophilin type, U bo 79.1 1.4 3.1E-05 46.4 2.7 52 280-332 40-91 (518)
292 KOG0211 Protein phosphatase 2A 79.1 58 0.0013 38.8 15.9 266 381-663 357-626 (759)
293 KOG4653 Uncharacterized conser 79.0 18 0.0004 42.5 11.5 183 433-628 739-928 (982)
294 KOG2025 Chromosome condensatio 78.3 76 0.0017 36.9 15.7 111 376-494 82-192 (892)
295 PF12530 DUF3730: Protein of u 78.1 81 0.0018 31.8 16.2 137 423-575 2-150 (234)
296 KOG1788 Uncharacterized conser 77.9 58 0.0013 39.4 14.9 254 400-662 663-982 (2799)
297 KOG0414 Chromosome condensatio 77.7 18 0.00039 44.0 11.2 130 381-526 921-1056(1251)
298 KOG3268 Predicted E3 ubiquitin 77.6 1.8 3.9E-05 40.6 2.6 47 281-327 166-229 (234)
299 PF07800 DUF1644: Protein of u 77.5 2.5 5.5E-05 39.3 3.4 34 279-312 1-47 (162)
300 KOG3665 ZYG-1-like serine/thre 77.4 29 0.00062 41.1 13.0 169 402-571 494-692 (699)
301 KOG4739 Uncharacterized protei 77.4 0.74 1.6E-05 45.9 -0.0 49 282-333 5-55 (233)
302 cd03561 VHS VHS domain family; 77.1 12 0.00026 34.3 7.9 73 378-450 36-112 (133)
303 KOG1078 Vesicle coat complex C 76.9 1.6E+02 0.0035 34.7 18.4 149 378-533 204-363 (865)
304 cd03569 VHS_Hrs_Vps27p VHS dom 76.7 8.8 0.00019 35.6 6.9 71 379-449 41-113 (142)
305 KOG2034 Vacuolar sorting prote 76.6 3.4 7.4E-05 48.5 4.9 38 276-313 813-852 (911)
306 KOG1940 Zn-finger protein [Gen 76.1 1.7 3.7E-05 44.6 2.2 43 280-323 158-204 (276)
307 KOG2025 Chromosome condensatio 75.3 68 0.0015 37.3 14.4 116 420-544 84-200 (892)
308 PF05918 API5: Apoptosis inhib 74.7 9.5 0.0002 43.4 7.7 96 379-487 59-157 (556)
309 KOG0915 Uncharacterized conser 74.6 70 0.0015 40.3 15.2 240 380-628 1040-1316(1702)
310 PHA02825 LAP/PHD finger-like p 74.6 3.2 7E-05 38.7 3.3 48 278-326 6-59 (162)
311 PF14446 Prok-RING_1: Prokaryo 74.5 2.5 5.4E-05 32.0 2.1 30 280-309 5-38 (54)
312 KOG2032 Uncharacterized conser 74.0 1.5E+02 0.0033 33.0 17.8 120 419-538 252-375 (533)
313 PF05883 Baculo_RING: Baculovi 74.0 3.2 7E-05 37.7 3.1 46 280-326 26-80 (134)
314 PF08746 zf-RING-like: RING-li 73.8 3.4 7.4E-05 29.8 2.7 39 283-321 1-43 (43)
315 smart00288 VHS Domain present 73.6 13 0.00027 34.2 7.1 71 379-449 37-110 (133)
316 KOG1820 Microtubule-associated 73.6 61 0.0013 38.9 14.3 182 382-576 256-443 (815)
317 PF14569 zf-UDP: Zinc-binding 73.5 4 8.6E-05 33.2 3.2 47 280-326 9-62 (80)
318 PF11865 DUF3385: Domain of un 73.3 29 0.00062 32.9 9.7 145 462-616 10-155 (160)
319 KOG1566 Conserved protein Mo25 72.9 1.3E+02 0.0028 31.7 15.6 199 379-579 79-289 (342)
320 KOG2137 Protein kinase [Signal 72.3 38 0.00083 39.3 11.8 134 417-556 385-518 (700)
321 cd03572 ENTH_epsin_related ENT 71.9 14 0.0003 33.3 6.7 72 591-663 41-120 (122)
322 KOG2062 26S proteasome regulat 71.9 1.3E+02 0.0028 35.3 15.5 98 512-623 526-623 (929)
323 cd03568 VHS_STAM VHS domain fa 71.3 17 0.00036 33.9 7.4 72 378-449 36-109 (144)
324 KOG1812 Predicted E3 ubiquitin 71.2 3.6 7.7E-05 44.9 3.3 70 279-349 145-228 (384)
325 PHA03096 p28-like protein; Pro 71.0 2.5 5.5E-05 43.9 2.0 44 281-324 179-232 (284)
326 COG5116 RPN2 26S proteasome re 70.4 1.6E+02 0.0034 33.5 15.4 100 504-618 550-650 (926)
327 KOG1943 Beta-tubulin folding c 70.3 2.7E+02 0.0058 34.2 18.5 150 505-659 341-497 (1133)
328 KOG1788 Uncharacterized conser 70.2 1.5E+02 0.0033 36.1 15.8 98 520-619 871-983 (2799)
329 KOG1820 Microtubule-associated 70.1 67 0.0015 38.5 13.6 174 476-660 266-441 (815)
330 COG3813 Uncharacterized protei 70.0 3.9 8.5E-05 32.5 2.4 37 297-336 26-62 (84)
331 cd03567 VHS_GGA VHS domain fam 69.6 20 0.00043 33.2 7.4 71 379-449 38-115 (139)
332 PHA02862 5L protein; Provision 69.5 3.8 8.3E-05 37.5 2.5 45 282-327 4-54 (156)
333 PF12906 RINGv: RING-variant d 69.2 3 6.6E-05 30.7 1.5 39 283-321 1-47 (47)
334 COG5218 YCG1 Chromosome conden 69.2 39 0.00084 38.3 10.5 110 376-494 88-198 (885)
335 PF11707 Npa1: Ribosome 60S bi 68.2 1.7E+02 0.0037 31.2 18.5 159 423-582 58-243 (330)
336 KOG0915 Uncharacterized conser 68.1 3.3E+02 0.0072 34.8 18.8 182 394-579 972-1163(1702)
337 KOG0825 PHD Zn-finger protein 67.7 4.5 9.7E-05 46.6 3.2 49 274-322 90-150 (1134)
338 KOG3970 Predicted E3 ubiquitin 67.7 9.6 0.00021 37.4 5.0 45 281-325 51-104 (299)
339 KOG2933 Uncharacterized conser 67.4 35 0.00076 35.7 9.2 139 380-532 89-232 (334)
340 KOG4653 Uncharacterized conser 67.1 45 0.00096 39.5 10.9 174 476-662 740-918 (982)
341 KOG0414 Chromosome condensatio 66.9 43 0.00094 41.0 11.1 177 463-663 920-1104(1251)
342 PF05605 zf-Di19: Drought indu 66.7 6 0.00013 30.0 2.8 38 279-323 1-39 (54)
343 KOG0301 Phospholipase A2-activ 66.3 1.4E+02 0.003 34.6 14.2 165 427-600 550-728 (745)
344 KOG2956 CLIP-associating prote 66.2 2.2E+02 0.0048 31.7 15.3 184 380-575 287-476 (516)
345 cd03568 VHS_STAM VHS domain fa 66.2 31 0.00066 32.1 8.0 73 590-664 39-112 (144)
346 KOG3899 Uncharacterized conser 65.5 3.3 7.1E-05 42.1 1.4 31 298-328 325-367 (381)
347 PRK06266 transcription initiat 65.4 27 0.00058 33.8 7.7 53 278-346 115-168 (178)
348 KOG4535 HEAT and armadillo rep 64.8 13 0.00029 40.8 5.8 153 421-577 433-604 (728)
349 PF14500 MMS19_N: Dos2-interac 63.7 1.8E+02 0.004 29.9 18.3 222 383-622 3-241 (262)
350 PF08167 RIX1: rRNA processing 63.4 32 0.0007 32.7 7.8 112 506-619 26-144 (165)
351 KOG1943 Beta-tubulin folding c 63.3 1.9E+02 0.0042 35.4 15.3 151 420-576 340-500 (1133)
352 PF11865 DUF3385: Domain of un 63.3 86 0.0019 29.7 10.7 138 505-653 10-148 (160)
353 KOG4718 Non-SMC (structural ma 63.1 4.2 9.1E-05 39.6 1.6 46 281-327 182-228 (235)
354 PF10363 DUF2435: Protein of u 62.6 22 0.00048 30.3 5.8 71 380-452 4-74 (92)
355 PF14726 RTTN_N: Rotatin, an a 62.2 34 0.00073 29.6 6.9 94 478-572 2-96 (98)
356 KOG1832 HIV-1 Vpr-binding prot 61.3 20 0.00044 42.2 6.8 132 416-547 596-786 (1516)
357 PF10272 Tmpp129: Putative tra 61.3 5.3 0.00011 42.8 2.2 29 301-329 314-354 (358)
358 PF11864 DUF3384: Domain of un 60.5 2.7E+02 0.0059 31.3 15.8 252 380-649 28-317 (464)
359 KOG3579 Predicted E3 ubiquitin 60.5 7.2 0.00016 39.6 2.8 67 277-344 265-340 (352)
360 KOG1967 DNA repair/transcripti 59.9 22 0.00048 42.2 6.9 145 421-570 867-1018(1030)
361 KOG1243 Protein kinase [Genera 59.6 1.3E+02 0.0029 35.0 12.8 255 383-661 258-514 (690)
362 KOG1020 Sister chromatid cohes 59.6 68 0.0015 40.4 11.0 140 421-576 816-960 (1692)
363 PF14726 RTTN_N: Rotatin, an a 59.5 72 0.0016 27.6 8.4 93 394-487 2-95 (98)
364 KOG4445 Uncharacterized conser 59.1 5.7 0.00012 40.7 1.9 48 280-327 115-187 (368)
365 cd03561 VHS VHS domain family; 59.0 50 0.0011 30.1 8.0 75 590-666 39-116 (133)
366 COG5236 Uncharacterized conser 59.0 6.7 0.00014 40.9 2.3 48 278-325 59-107 (493)
367 KOG1815 Predicted E3 ubiquitin 57.8 9.2 0.0002 42.7 3.5 36 278-313 68-104 (444)
368 KOG1566 Conserved protein Mo25 57.7 2.6E+02 0.0055 29.6 19.2 220 416-644 74-311 (342)
369 PF03854 zf-P11: P-11 zinc fin 57.6 4.9 0.00011 29.4 0.8 30 297-327 18-47 (50)
370 PF06844 DUF1244: Protein of u 57.5 6.2 0.00013 31.0 1.4 13 301-313 11-23 (68)
371 cd03567 VHS_GGA VHS domain fam 57.3 56 0.0012 30.2 8.0 74 589-664 39-118 (139)
372 cd03569 VHS_Hrs_Vps27p VHS dom 57.3 55 0.0012 30.3 8.0 74 589-664 42-116 (142)
373 TIGR00634 recN DNA repair prot 57.0 3.6E+02 0.0078 31.1 18.5 78 51-134 180-263 (563)
374 PF08167 RIX1: rRNA processing 56.6 38 0.00081 32.2 7.0 110 463-576 26-143 (165)
375 PF14353 CpXC: CpXC protein 56.6 6.9 0.00015 35.5 1.8 47 280-326 1-49 (128)
376 PRK14707 hypothetical protein; 56.5 6.4E+02 0.014 33.9 20.9 226 391-619 386-614 (2710)
377 PF00790 VHS: VHS domain; Int 55.4 30 0.00064 31.9 5.9 72 378-449 41-117 (140)
378 PF07191 zinc-ribbons_6: zinc- 55.0 0.8 1.7E-05 36.6 -3.9 41 280-326 1-41 (70)
379 PF08216 CTNNBL: Catenin-beta- 54.6 14 0.0003 32.5 3.2 43 396-439 63-105 (108)
380 PF00790 VHS: VHS domain; Int 54.5 50 0.0011 30.4 7.2 73 590-664 44-120 (140)
381 PF06906 DUF1272: Protein of u 53.5 12 0.00027 28.4 2.4 27 299-328 28-54 (57)
382 PF13811 DUF4186: Domain of un 51.3 9.4 0.0002 33.3 1.7 44 292-345 64-110 (111)
383 PLN03205 ATR interacting prote 51.1 2.2E+02 0.0048 31.0 11.9 116 379-494 323-448 (652)
384 PLN02189 cellulose synthase 50.8 10 0.00022 45.8 2.5 47 280-326 34-87 (1040)
385 PF06497 DUF1098: Protein of u 50.6 1.2E+02 0.0025 26.1 8.1 56 19-76 13-70 (95)
386 smart00638 LPD_N Lipoprotein N 50.2 4.5E+02 0.0098 30.3 17.4 184 421-626 311-517 (574)
387 KOG0309 Conserved WD40 repeat- 49.7 11 0.00023 43.4 2.3 46 278-324 1026-1074(1081)
388 PLN02195 cellulose synthase A 48.3 13 0.00029 44.7 2.8 46 281-326 7-59 (977)
389 PF10363 DUF2435: Protein of u 48.1 68 0.0015 27.3 6.5 77 549-629 6-83 (92)
390 KOG2932 E3 ubiquitin ligase in 48.0 7.6 0.00017 40.0 0.7 43 280-325 90-133 (389)
391 PLN02436 cellulose synthase A 48.0 12 0.00026 45.4 2.4 47 280-326 36-89 (1094)
392 KOG1243 Protein kinase [Genera 47.6 53 0.0011 38.1 7.3 183 379-574 330-513 (690)
393 PF10235 Cript: Microtubule-as 47.5 11 0.00023 31.9 1.4 39 280-328 44-82 (90)
394 PRK10869 recombination and rep 47.1 5E+02 0.011 29.9 19.2 77 52-134 177-256 (553)
395 cd00350 rubredoxin_like Rubred 47.0 14 0.0003 24.9 1.7 10 315-324 17-26 (33)
396 PF01347 Vitellogenin_N: Lipop 46.6 2.4E+02 0.0052 32.8 13.1 131 424-573 434-586 (618)
397 PLN02638 cellulose synthase A 46.1 14 0.0003 45.0 2.6 47 280-326 17-70 (1079)
398 KOG2933 Uncharacterized conser 46.0 1.7E+02 0.0036 30.8 9.9 140 464-617 90-233 (334)
399 PF10521 DUF2454: Protein of u 45.8 2E+02 0.0044 29.8 11.0 71 506-576 120-203 (282)
400 PRK12495 hypothetical protein; 45.8 26 0.00057 34.6 3.9 32 213-250 8-39 (226)
401 PF06676 DUF1178: Protein of u 45.7 8.8 0.00019 35.7 0.7 24 297-325 9-42 (148)
402 KOG0314 Predicted E3 ubiquitin 45.6 11 0.00023 41.5 1.4 68 275-344 214-285 (448)
403 COG0497 RecN ATPase involved i 43.7 5.6E+02 0.012 29.5 17.2 76 50-131 175-254 (557)
404 smart00288 VHS Domain present 43.6 1.2E+02 0.0026 27.6 7.9 72 590-663 39-112 (133)
405 KOG2032 Uncharacterized conser 43.3 1.5E+02 0.0032 33.2 9.5 152 504-660 253-414 (533)
406 PF08216 CTNNBL: Catenin-beta- 42.8 26 0.00056 30.8 3.1 41 522-563 63-103 (108)
407 KOG1952 Transcription factor N 42.7 18 0.00038 42.5 2.6 47 279-325 190-246 (950)
408 PF13251 DUF4042: Domain of un 41.9 3.1E+02 0.0067 26.6 10.7 117 544-662 37-174 (182)
409 COG5116 RPN2 26S proteasome re 41.2 68 0.0015 36.3 6.6 72 545-624 550-621 (926)
410 PF10497 zf-4CXXC_R1: Zinc-fin 41.1 25 0.00054 30.8 2.8 26 299-324 37-70 (105)
411 COG5098 Chromosome condensatio 41.0 1.7E+02 0.0037 34.1 9.7 107 548-660 301-413 (1128)
412 PF06957 COPI_C: Coatomer (COP 41.0 4.2E+02 0.0092 29.3 12.7 53 81-151 195-247 (422)
413 TIGR00373 conserved hypothetic 41.0 20 0.00043 33.9 2.3 35 278-328 107-141 (158)
414 KOG1991 Nuclear transport rece 40.8 5.1E+02 0.011 31.7 13.9 195 421-619 410-649 (1010)
415 PLN02915 cellulose synthase A 40.7 18 0.0004 43.8 2.5 47 280-326 15-68 (1044)
416 PF01347 Vitellogenin_N: Lipop 40.5 2.1E+02 0.0047 33.2 11.4 197 423-647 349-572 (618)
417 KOG1908 Ribonuclease inhibitor 40.5 45 0.00098 30.0 4.2 83 11-95 43-140 (165)
418 PF06416 DUF1076: Protein of u 40.5 23 0.00051 31.0 2.4 51 277-328 37-93 (113)
419 PF12397 U3snoRNP10: U3 small 40.3 2.6E+02 0.0057 24.7 10.3 90 547-642 7-104 (121)
420 PRK04023 DNA polymerase II lar 40.1 23 0.00051 42.6 3.1 64 279-346 625-693 (1121)
421 COG1675 TFA1 Transcription ini 40.1 35 0.00077 32.8 3.8 54 277-346 110-164 (176)
422 PF15616 TerY-C: TerY-C metal 39.8 12 0.00026 34.1 0.6 44 276-326 73-116 (131)
423 KOG2676 Uncharacterized conser 39.5 29 0.00064 36.8 3.4 61 399-459 376-439 (478)
424 PF01417 ENTH: ENTH domain; I 39.0 2E+02 0.0044 25.7 8.6 96 562-662 18-121 (125)
425 PF05597 Phasin: Poly(hydroxya 38.9 1.8E+02 0.0039 26.6 8.1 29 194-222 94-125 (132)
426 PF12830 Nipped-B_C: Sister ch 37.9 1.6E+02 0.0034 28.6 8.2 67 378-449 7-73 (187)
427 smart00531 TFIIE Transcription 37.2 17 0.00037 33.9 1.2 38 278-327 97-135 (147)
428 COG5183 SSM4 Protein involved 36.9 24 0.00051 41.2 2.4 49 278-326 10-66 (1175)
429 COG2176 PolC DNA polymerase II 36.8 25 0.00054 43.0 2.7 46 276-333 910-958 (1444)
430 COG3492 Uncharacterized protei 36.7 18 0.00039 30.2 1.1 13 301-313 42-54 (104)
431 PRK11088 rrmA 23S rRNA methylt 35.7 20 0.00044 37.0 1.6 25 280-304 2-29 (272)
432 PF07814 WAPL: Wings apart-lik 35.3 2E+02 0.0044 31.1 9.3 92 464-556 23-116 (361)
433 PF10274 ParcG: Parkin co-regu 35.0 4E+02 0.0088 25.9 10.2 73 505-578 38-111 (183)
434 PF04216 FdhE: Protein involve 34.7 6.5 0.00014 41.2 -2.3 47 278-325 170-221 (290)
435 PLN02400 cellulose synthase 34.4 19 0.00042 43.8 1.4 47 280-326 36-89 (1085)
436 KOG0396 Uncharacterized conser 34.4 29 0.00064 36.9 2.5 47 281-327 331-380 (389)
437 KOG4464 Signaling protein RIC- 34.3 6.7E+02 0.015 27.6 14.1 174 459-644 10-198 (532)
438 KOG1100 Predicted E3 ubiquitin 34.2 21 0.00045 35.4 1.3 39 283-326 161-200 (207)
439 cd03565 VHS_Tom1 VHS domain fa 33.9 2.6E+02 0.0056 25.8 8.5 73 590-663 40-116 (141)
440 COG5098 Chromosome condensatio 33.2 1.1E+02 0.0025 35.5 6.9 112 423-537 301-418 (1128)
441 PF09889 DUF2116: Uncharacteri 32.9 58 0.0012 25.3 3.3 15 314-328 2-16 (59)
442 COG0068 HypF Hydrogenase matur 32.7 23 0.0005 41.0 1.6 52 275-326 96-184 (750)
443 COG5537 IRR1 Cohesin [Cell div 32.6 3.3E+02 0.0073 31.3 10.3 139 386-534 282-422 (740)
444 TIGR01562 FdhE formate dehydro 32.3 13 0.00027 39.2 -0.6 46 278-324 182-233 (305)
445 PF14666 RICTOR_M: Rapamycin-i 31.8 5.5E+02 0.012 25.8 12.1 130 519-661 78-224 (226)
446 PF10571 UPF0547: Uncharacteri 31.6 26 0.00055 22.4 1.0 9 282-290 2-10 (26)
447 PF14357 DUF4404: Domain of un 31.5 2.5E+02 0.0054 23.5 7.2 72 126-201 4-78 (85)
448 PF14663 RasGEF_N_2: Rapamycin 31.4 2E+02 0.0044 25.5 7.1 39 422-460 9-47 (115)
449 PF06012 DUF908: Domain of Unk 31.3 2.2E+02 0.0049 30.3 8.8 67 478-544 237-307 (329)
450 KOG2137 Protein kinase [Signal 31.1 3.5E+02 0.0077 31.7 10.5 133 505-646 389-521 (700)
451 KOG1428 Inhibitor of type V ad 29.5 45 0.00097 41.6 3.1 49 280-328 3486-3546(3738)
452 PF08317 Spc7: Spc7 kinetochor 29.2 7.2E+02 0.016 26.4 18.4 104 8-119 38-146 (325)
453 KOG4231 Intracellular membrane 29.2 38 0.00082 37.6 2.3 171 480-662 222-399 (763)
454 PF10083 DUF2321: Uncharacteri 29.0 2.6E+02 0.0056 26.3 7.3 90 299-412 27-119 (158)
455 PF04499 SAPS: SIT4 phosphatas 28.9 3.6E+02 0.0078 30.4 10.2 113 545-663 20-150 (475)
456 PF13251 DUF4042: Domain of un 28.7 3.8E+02 0.0082 26.0 9.0 110 506-619 40-175 (182)
457 PF01726 LexA_DNA_bind: LexA D 28.5 1.3E+02 0.0029 23.7 4.8 44 172-220 9-52 (65)
458 PF04641 Rtf2: Rtf2 RING-finge 27.9 48 0.001 34.1 2.9 35 279-313 33-68 (260)
459 COG1592 Rubrerythrin [Energy p 27.4 37 0.0008 32.3 1.7 25 280-324 134-158 (166)
460 cd00197 VHS_ENTH_ANTH VHS, ENT 27.2 2.6E+02 0.0056 24.5 7.1 69 379-447 37-112 (115)
461 PF08506 Cse1: Cse1; InterPro 27.1 8.4E+02 0.018 26.5 13.2 213 393-613 110-370 (370)
462 KOG1832 HIV-1 Vpr-binding prot 27.0 1.4E+02 0.0031 35.7 6.5 121 433-556 365-490 (1516)
463 PLN03229 acetyl-coenzyme A car 26.9 1.1E+03 0.025 28.0 15.2 165 54-246 490-679 (762)
464 COG1579 Zn-ribbon protein, pos 26.8 4.1E+02 0.0088 27.0 9.0 41 276-327 193-233 (239)
465 PF12830 Nipped-B_C: Sister ch 26.7 5.8E+02 0.013 24.6 10.7 61 506-577 9-75 (187)
466 KOG3476 Microtubule-associated 26.2 9.1 0.0002 31.6 -2.2 39 280-328 54-92 (100)
467 PF06012 DUF908: Domain of Unk 26.0 2.2E+02 0.0048 30.3 7.6 78 436-513 237-324 (329)
468 cd03565 VHS_Tom1 VHS domain fa 25.8 3.5E+02 0.0075 25.0 7.9 71 379-449 38-114 (141)
469 cd00197 VHS_ENTH_ANTH VHS, ENT 25.5 3.9E+02 0.0085 23.3 8.0 69 590-660 39-113 (115)
470 KOG1992 Nuclear export recepto 25.3 6.5E+02 0.014 30.3 11.2 175 421-598 498-705 (960)
471 KOG2462 C2H2-type Zn-finger pr 25.3 29 0.00064 35.5 0.7 52 277-328 158-228 (279)
472 cd00730 rubredoxin Rubredoxin; 25.2 35 0.00076 25.6 0.9 13 276-288 30-42 (50)
473 PRK06424 transcription factor; 25.2 2.3E+02 0.005 26.4 6.5 63 144-206 73-139 (144)
474 PF10521 DUF2454: Protein of u 25.1 4.3E+02 0.0093 27.4 9.4 70 379-448 119-201 (282)
475 KOG2169 Zn-finger transcriptio 24.9 54 0.0012 38.4 2.8 67 276-344 302-374 (636)
476 KOG4713 Cyclin-dependent kinas 24.8 93 0.002 29.5 3.7 43 63-105 138-180 (189)
477 PLN03086 PRLI-interacting fact 24.7 78 0.0017 36.3 3.9 51 276-326 449-515 (567)
478 COG1327 Predicted transcriptio 24.3 6E+02 0.013 23.8 10.0 88 125-222 64-151 (156)
479 KOG1609 Protein involved in mR 24.1 55 0.0012 34.4 2.6 49 280-328 78-136 (323)
480 PRK03564 formate dehydrogenase 23.6 27 0.00058 36.8 0.1 45 278-323 185-234 (309)
481 PF06160 EzrA: Septation ring 23.6 1.2E+03 0.025 27.0 15.4 83 79-169 162-247 (560)
482 KOG1992 Nuclear export recepto 23.3 4.6E+02 0.01 31.4 9.6 41 506-546 499-540 (960)
483 KOG0972 Huntingtin interacting 23.2 4.4E+02 0.0096 27.3 8.4 114 121-246 229-348 (384)
484 smart00638 LPD_N Lipoprotein N 23.0 1.2E+03 0.025 26.8 15.6 133 423-573 395-542 (574)
485 cd00729 rubredoxin_SM Rubredox 22.8 45 0.00096 22.7 1.0 10 315-324 18-27 (34)
486 cd08324 CARD_NOD1_CARD4 Caspas 22.8 4.6E+02 0.01 22.0 7.0 74 51-134 3-76 (85)
487 PF14631 FancD2: Fanconi anaem 22.4 9.1E+02 0.02 31.5 12.9 110 420-535 430-543 (1426)
488 PRK14714 DNA polymerase II lar 22.1 75 0.0016 39.5 3.3 48 280-327 667-721 (1337)
489 PF00301 Rubredoxin: Rubredoxi 22.0 39 0.00085 24.9 0.6 13 276-288 30-42 (47)
490 KOG2956 CLIP-associating prote 21.7 1.2E+03 0.025 26.3 16.1 139 506-654 330-469 (516)
491 PF09538 FYDLN_acid: Protein o 21.6 67 0.0014 28.3 2.1 14 315-328 26-39 (108)
492 PF14500 MMS19_N: Dos2-interac 21.5 8.9E+02 0.019 24.9 15.0 220 426-664 4-239 (262)
493 cd08329 CARD_BIRC2_BIRC3 Caspa 21.4 2E+02 0.0043 24.6 4.9 60 50-110 10-69 (94)
494 PF04499 SAPS: SIT4 phosphatas 21.4 6.2E+02 0.013 28.6 10.2 77 456-533 56-147 (475)
495 KOG1949 Uncharacterized conser 21.3 9.7E+02 0.021 28.4 11.4 145 465-618 177-331 (1005)
496 PRK11595 DNA utilization prote 21.3 62 0.0013 32.5 2.1 39 282-326 7-45 (227)
497 KOG3053 Uncharacterized conser 21.1 46 0.00099 33.7 1.1 51 276-326 16-82 (293)
498 PF00412 LIM: LIM domain; Int 20.8 86 0.0019 23.5 2.4 33 278-310 24-57 (58)
499 COG3357 Predicted transcriptio 20.7 2.5E+02 0.0055 23.8 5.1 33 174-211 4-36 (97)
500 COG4068 Uncharacterized protei 20.4 1.2E+02 0.0027 23.3 2.9 24 315-338 8-31 (64)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=8.6e-28 Score=292.11 Aligned_cols=282 Identities=20% Similarity=0.227 Sum_probs=249.2
Q ss_pred hhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCchhhHHHh-hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc
Q 039015 377 MKLLANFISDRLLEG--TSEEKNKVAYEVRLLTKSSIFNRSCLVE-VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK 453 (685)
Q Consensus 377 ~~~~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~ 453 (685)
....+.+|++.|+++ +++.+..|+..|+.+++.+++||..+++ .|+||.|+.+|.+++..++++|+.+|.||+.+++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 345689999999876 8899999999999999999999999997 7999999999999999999999999999999999
Q ss_pred hhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc---hhHHHHhhcCCCcHHHHHHHhccCCH---HHHHHHHH
Q 039015 454 SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI---EEYRKLIGENPEAIPALVDMVRDGTD---RSKKNALV 527 (685)
Q Consensus 454 ~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~---~~~~~A~~ 527 (685)
+|..|+..|+|++|+.+|++| +.+.+++|+++|++|+.+ ++++..|+...|+||.|++++++++. -.+..|+.
T Consensus 91 nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~ 169 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTG 169 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHH
Confidence 999999999999999999999 999999999999999987 55676766559999999999999863 23456789
Q ss_pred HHHHhcCCCCcHHH-HHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhH
Q 039015 528 AIFGLLMHSGNHWR-FLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAG 605 (685)
Q Consensus 528 aL~nLs~~~~n~~~-iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~ 605 (685)
+|+|||.+.+++.+ ++++|+||.|+.+| +++++.++..|+.+|.+++.+ ++++..+++.|+||.|+++|++++++.+
T Consensus 170 AL~nLs~~~en~~~~IIeaGaVp~LV~LL-sS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~V 248 (2102)
T PLN03200 170 ALRNLCGSTDGFWSATLEAGGVDILVKLL-SSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSV 248 (2102)
T ss_pred HHHHHhcCccchHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHH
Confidence 99999999998865 58999999999999 567889999999999988875 7799999999999999999987746689
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCCh---------HHHHHHHHHHHHHHH
Q 039015 606 KEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSS---------RASKKASALIRILHE 662 (685)
Q Consensus 606 ~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~---------~~k~~A~~lL~~l~~ 662 (685)
+++|+++|.+||.++ ++.+..+.+ .|+++.|+.++.+++. ..++.|.|.|..+.+
T Consensus 249 RE~AA~AL~nLAs~s-~e~r~~Iv~-aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 249 RAEAAGALEALSSQS-KEAKQAIAD-AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHH-CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 999999999999876 455666666 8999999999986542 347889998888766
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=4.3e-26 Score=277.40 Aligned_cols=282 Identities=17% Similarity=0.245 Sum_probs=245.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
.+.++.|+++|.+++.+.|..|++.|++++.+++++|..++++|+||.|+++|.+++..++++|+++|.||+.++++...
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 45799999999999999999999999999998889999999999999999999999999999999999999998877555
Q ss_pred HH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHH-------------------------------------HH
Q 039015 458 VV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYR-------------------------------------KL 499 (685)
Q Consensus 458 i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-------------------------------------~~ 499 (685)
++ +.|++++|+++|+++ +.+.+..|+++|++|+...+.. ..
T Consensus 525 iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 44 789999999999999 9999999999999996432211 11
Q ss_pred hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc--
Q 039015 500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-- 576 (685)
Q Consensus 500 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-- 576 (685)
.....|+++.|+++|++++...++.|+++|.|++.+. +++..++..|+|++|+.+| ++.+.+.+.+++.+|.+|+.
T Consensus 604 g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCC
Confidence 1123689999999999999999999999999999654 5788899999999999999 56777889999999999985
Q ss_pred ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 039015 577 KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASAL 656 (685)
Q Consensus 577 ~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~l 656 (685)
.+..+..+++.|+|+.|+++|++. +...++.|+.+|.+++.++ +....+.. .|+++.|+.++++|+++.|+.|++.
T Consensus 683 ~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~~~--e~~~ei~~-~~~I~~Lv~lLr~G~~~~k~~Aa~A 758 (2102)
T PLN03200 683 KENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLSDP--EVAAEALA-EDIILPLTRVLREGTLEGKRNAARA 758 (2102)
T ss_pred CHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHcCc--hHHHHHHh-cCcHHHHHHHHHhCChHHHHHHHHH
Confidence 455566788999999999999987 9999999999999999984 34455555 6889999999999999999999888
Q ss_pred HHHHHHhhc
Q 039015 657 IRILHEFYE 665 (685)
Q Consensus 657 L~~l~~~~~ 665 (685)
|..|.+...
T Consensus 759 L~~L~~~~~ 767 (2102)
T PLN03200 759 LAQLLKHFP 767 (2102)
T ss_pred HHHHHhCCC
Confidence 877766543
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.7e-25 Score=222.72 Aligned_cols=277 Identities=21% Similarity=0.245 Sum_probs=252.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV 459 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 459 (685)
.+..+.+.-++.+..+|..++..|.++.. ..+||+.++.+|++|.||.+|++.|.++|..+.+++.|++.+..+|+.++
T Consensus 168 aL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~La 246 (550)
T KOG4224|consen 168 ALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILA 246 (550)
T ss_pred chhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 35566665577788899999999999995 88999999999999999999999999999999999999999999999999
Q ss_pred hcC--cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015 460 ESG--GLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 460 ~~g--~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 537 (685)
+.| .++.||.++..| ++.++-.|.-+|.+|+.+.+|...|.+ .|.+|.+|++|+++........+.++.|++.++.
T Consensus 247 qaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 247 QAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred hcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 877 999999999999 999999999999999999999999999 9999999999998887777788899999999999
Q ss_pred cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015 538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL 616 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L 616 (685)
|-..++++|.+.+||.+|.-.++++++.+|..+|+|||. ...++..|.++|+||.+.+++.++ +-.+++.-.+++..|
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~L 403 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQL 403 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHH
Confidence 999999999999999999766788899999999999988 688999999999999999999988 888899888889999
Q ss_pred hccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 617 CINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 617 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
+.+ +..+..+.. .|++|.|..++.+.+...+.+|++.|-.|+..
T Consensus 404 al~--d~~k~~lld-~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 404 ALN--DNDKEALLD-SGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred Hhc--cccHHHHhh-cCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 988 445667776 99999999999999999998888887777653
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.2e-25 Score=220.63 Aligned_cols=279 Identities=25% Similarity=0.335 Sum_probs=251.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHh
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVE 460 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~ 460 (685)
++.|+..+.+...+.|..++.+|.+|+.. .+||..++..|++.++.++-+++|..+|.+|..+|.|++...+||..++.
T Consensus 128 l~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~ 206 (550)
T KOG4224|consen 128 LDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVH 206 (550)
T ss_pred hHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 45566666667778999999999999974 79999999999999999988899999999999999999999999999999
Q ss_pred cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCC--cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015 461 SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPE--AIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN 538 (685)
Q Consensus 461 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g--~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 538 (685)
+|++|.||.+++.+ +.+++..++.++.+++.+...|..+.+ .| .||.||+++.++++++|-.|..||.||+.+.+-
T Consensus 207 aG~lpvLVsll~s~-d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSG-DLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred cCCchhhhhhhccC-ChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence 99999999999999 999999999999999999999998887 66 999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015 539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI 618 (685)
Q Consensus 539 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~ 618 (685)
...++++|.+|.++++| .++.....-..++++.|++-+|-+...|.++|.+..||.+|+.+.+.+.+-+|+.+|++|+.
T Consensus 285 q~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELL-QSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 99999999999999999 56666777888999999999999999999999999999999988677799999999999998
Q ss_pred cCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015 619 NGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE 665 (685)
Q Consensus 619 ~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~ 665 (685)
.... -+..+.. .|++|+|.+|+.+|.-..+....+.+..|.-...
T Consensus 364 sse~-n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 364 SSEH-NVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIAQLALNDN 408 (550)
T ss_pred hhhh-hhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence 6533 3445544 8999999999999998888877777777665443
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.9e-24 Score=232.59 Aligned_cols=281 Identities=20% Similarity=0.261 Sum_probs=244.7
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hH
Q 039015 379 LLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KS 456 (685)
Q Consensus 379 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~ 456 (685)
+.++.+|..|.. .++..|..|+++|.++|.++.++...++++|++|.++.+|.+++..+++.|+|+|.|++.+... |.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 568999999974 4589999999999999999999999999999999999999999999999999999999998865 88
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015 457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS 536 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 536 (685)
.+.+.|++++|+.++..........+++|+|.||+.+...-..+.....++|.|..++.+.++++..+|++||..|+-+.
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 88999999999999998834478899999999999887544444443568999999999999999999999999999655
Q ss_pred -CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcH-HHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015 537 -GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGT-IAILHHGALDMIMKILDSCTSRAGKEYCVSLLL 614 (685)
Q Consensus 537 -~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~ 614 (685)
+.-+.++++|+++.|+.+| ...+..+...|+.++.|++...+.. ..+.+.|++|.|..++...+....+..|++++.
T Consensus 269 ne~iq~vi~~gvv~~LV~lL-~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLL-GHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred hHHHHHHHHccchHHHHHHH-cCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 4566778999999999999 5566778889999999998865554 557999999999999885436668899999999
Q ss_pred HHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015 615 ALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE 662 (685)
Q Consensus 615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 662 (685)
|++.++.+++..++. +|++|.|+.+++++.-+.|+.|+|.+..+..
T Consensus 348 NItAG~~~qiqaVid--a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 348 NITAGNQEQIQAVID--ANLIPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred HhhcCCHHHHHHHHH--cccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 999988767665554 7999999999999999999999998887644
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.5e-21 Score=206.02 Aligned_cols=287 Identities=18% Similarity=0.221 Sum_probs=250.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCH-HHHHHHHHHhhccccCcchhHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDS-STQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~-~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
++++.+++.|.+++.+++.+|+++|.+++.+++..|..+...|++++|+.++...+. ....++.|+|.||+.+..-...
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~ 231 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP 231 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 357889999999999999999999999999999999999999999999999988766 7899999999999988743222
Q ss_pred -HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015 458 -VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS 536 (685)
Q Consensus 458 -i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 536 (685)
-.-..+++.|..++.+. +.++...|+++|.+|+....-+..+.-+.|++|.||++|.+.++.++..|+.++.|++...
T Consensus 232 ~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~ 310 (514)
T KOG0166|consen 232 FDVVAPILPALLRLLHST-DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS 310 (514)
T ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence 23467899999999999 9999999999999999777555555544999999999999999999999999999999877
Q ss_pred Cc-HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh-cChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015 537 GN-HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA-EKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL 614 (685)
Q Consensus 537 ~n-~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La-~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~ 614 (685)
+. ...++..|++|.|..+|..++...++.+|++++.|++ ++++...++.++|.+|.|+.+|..+ ....+..|++++.
T Consensus 311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIs 389 (514)
T KOG0166|consen 311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAIS 389 (514)
T ss_pred HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHH
Confidence 75 4566899999999999954666678999999999995 5677888999999999999999998 8999999999999
Q ss_pred HHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcccC
Q 039015 615 ALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHS 668 (685)
Q Consensus 615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~ 668 (685)
|++..+.++-...+.+ .|++++|..++.-.+.+.-..+...+..+-+..+...
T Consensus 390 N~ts~g~~~qi~yLv~-~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~ 442 (514)
T KOG0166|consen 390 NLTSSGTPEQIKYLVE-QGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEK 442 (514)
T ss_pred hhcccCCHHHHHHHHH-cCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 9999988887788887 8999999999976778888888888888877765443
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.86 E-value=2.7e-21 Score=193.45 Aligned_cols=276 Identities=19% Similarity=0.221 Sum_probs=233.7
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hH
Q 039015 379 LLANFISDRLL-EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KS 456 (685)
Q Consensus 379 ~~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~ 456 (685)
+.++.+++.+. ....-.+.+|+++|.+++.+.......++++|++|.++++|.+.+.++++.++|+|.|++.+.+. |.
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 34777888884 44445688999999999997777777889999999999999999999999999999999998866 88
Q ss_pred HHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCch---hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015 457 MVVESGGLDFIVDMVKKGL-KVEARQHAAATLFYIASIE---EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGL 532 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~---~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 532 (685)
.+.+.|++++++.+|.+.. +.....++.++|.||+... ..-..|.. ++|.|.+|+-+.++++..+|+|||.-|
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq---alpiL~KLiys~D~evlvDA~WAiSYl 270 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ---ALPILAKLIYSRDPEVLVDACWAISYL 270 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH---HHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 8889999999999998652 3477899999999999765 23444544 899999999999999999999999999
Q ss_pred cCCCC-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcH-HHHHhcCChHHHHHHhhcCCChhHHHHHH
Q 039015 533 LMHSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGT-IAILHHGALDMIMKILDSCTSRAGKEYCV 610 (685)
Q Consensus 533 s~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~ 610 (685)
+-.+. -...+++.|..+.|+++| ++++..+...|+....|+....+.+ ..|.+.|+++.+-.+|.+. ....+..|+
T Consensus 271 sDg~~E~i~avld~g~~~RLvElL-s~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaC 348 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELL-SHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEAC 348 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHh-cCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhh
Confidence 97665 456678999999999999 7788888999999999998866555 4568999999999999877 778999999
Q ss_pred HHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015 611 SLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH 661 (685)
Q Consensus 611 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 661 (685)
+.+.++..++.++...++. .+++|+|+.+++.-.-++|+.|-|.+....
T Consensus 349 WTiSNITAGnteqiqavid--~nliPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 349 WTISNITAGNTEQIQAVID--ANLIPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred eeecccccCCHHHHHHHHh--cccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999998777665554 789999999999998888877776665543
No 8
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.81 E-value=8.6e-18 Score=190.91 Aligned_cols=281 Identities=20% Similarity=0.276 Sum_probs=227.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
++.+..|+..|.+++.+....++..|+.|+. ..+|+..+.+.|+||.|++++.+++..++..|+.+|+|||.+++.|..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 4568999999999999999999999999997 678999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCCC
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDG-TDRSKKNALVAIFGLLMHS 536 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~ 536 (685)
|+..|++|.|+.+|..+ ..+..+..+|++||.++++|..+.. .+++|.|++++-++ +.+....++.++.||+.+.
T Consensus 368 mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 99999999999999866 4667799999999999999999988 78999999987554 4555556677777777777
Q ss_pred CcHHHHHhcCChHHHHHHhc-------------------------------------cCCChhHHHHHHHHHH-------
Q 039015 537 GNHWRFLAAGAVPLLLNLLT-------------------------------------SSDSEELITDSLAVLA------- 572 (685)
Q Consensus 537 ~n~~~iv~~G~v~~Lv~lL~-------------------------------------~~~~~~~~~~al~~L~------- 572 (685)
.|...+++.|+++.|++... .+++++..-+++++|+
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l 523 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL 523 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc
Confidence 66666666555555443211 1123334444444444
Q ss_pred -------------------------------------HHhcChhcHHHHHhcCChHHHHHHhhcCC-ChhHHHHHHHHHH
Q 039015 573 -------------------------------------TLAEKLDGTIAILHHGALDMIMKILDSCT-SRAGKEYCVSLLL 614 (685)
Q Consensus 573 -------------------------------------~La~~~~~~~~i~~~g~v~~Lv~lL~~~~-s~~~~e~a~~~L~ 614 (685)
.+|.++..+..+.++|.++.|+++|+..+ +.+..-..+-++.
T Consensus 524 d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~ 603 (708)
T PF05804_consen 524 DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFY 603 (708)
T ss_pred CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 44456666667777777899999888652 4566667788888
Q ss_pred HHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015 615 ALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE 665 (685)
Q Consensus 615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~ 665 (685)
++..+ +..+..+.++.++...|+.++++.++.+++-|...|-++..+.+
T Consensus 604 ~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 604 QLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 88888 56677887778999999999999999999999999999988753
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.80 E-value=2e-18 Score=173.06 Aligned_cols=278 Identities=17% Similarity=0.178 Sum_probs=235.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCC--HHHHHHHHHHhhccccCc---c
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKD--SSTQENAIAALLNLSKHC---K 453 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~--~~~~~~A~~aL~nLs~~~---~ 453 (685)
++++.++++|.+++.+++.+|+++|.+++-.++..|..+.+.|++.+++.+|.++. ..+..++.|.|.||+... .
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P 236 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP 236 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC
Confidence 35899999999999999999999999999988899999999999999999998754 488999999999998653 2
Q ss_pred hhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 039015 454 SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLL 533 (685)
Q Consensus 454 ~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 533 (685)
+-..| .-++|.|..++..- ++++...|++++.+|+..+.-+..+.-..|+.+.||++|.+++.....-|+..+.|+.
T Consensus 237 ~w~~i--sqalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV 313 (526)
T COG5064 237 DWSNI--SQALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313 (526)
T ss_pred chHHH--HHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence 33333 34689999999988 9999999999999999988555544444899999999999999888999999999999
Q ss_pred CCCC-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH-hcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHH
Q 039015 534 MHSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATL-AEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVS 611 (685)
Q Consensus 534 ~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L-a~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~ 611 (685)
...+ --+.++..|+++.+..+| +++...++.+|++.+.|+ |++.+...++.+++-+|.|+.+|... .-..+..|++
T Consensus 314 TG~D~QTqviI~~G~L~a~~~lL-s~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACW 391 (526)
T COG5064 314 TGSDDQTQVIINCGALKAFRSLL-SSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACW 391 (526)
T ss_pred ecCccceehheecccHHHHHHHh-cChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHH
Confidence 7766 456678999999999999 677789999999999999 55677888899999999999999887 7889999999
Q ss_pred HHHHHhccCc--HHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015 612 LLLALCINGG--ANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE 662 (685)
Q Consensus 612 ~L~~L~~~~~--~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 662 (685)
++.+...++. ++....+.. .|++.+|..++.-.+.++-+-+...++.+-+
T Consensus 392 AisNatsgg~~~PD~iryLv~-qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 392 AISNATSGGLNRPDIIRYLVS-QGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHhhhccccCCchHHHHHHH-ccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 9999987652 455667776 8999999999988777766666555555433
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.80 E-value=1.4e-17 Score=189.12 Aligned_cols=255 Identities=20% Similarity=0.263 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhc
Q 039015 393 SEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVK 472 (685)
Q Consensus 393 ~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~ 472 (685)
......+++.|.+++. +..+...+.+.|.|+.|+++|++++.++...+++.|.+||.+.+||..|.+.|+++.|++++.
T Consensus 263 eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 3455578888999996 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHH
Q 039015 473 KGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLL 552 (685)
Q Consensus 473 ~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv 552 (685)
.+ +.+.+..+..+|+|||++++.|..+.. .|+||.|+.+|.+++ .+..++.+|+|||.+++++..+...+++|.++
T Consensus 342 s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~-~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~ 417 (708)
T PF05804_consen 342 SE-NEDLVNVALRLLFNLSFDPELRSQMVS-LGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLM 417 (708)
T ss_pred CC-CHHHHHHHHHHHHHhCcCHHHHHHHHH-CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHH
Confidence 98 899999999999999999999999999 999999999998754 44679999999999999999999999999999
Q ss_pred HHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhc
Q 039015 553 NLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKS 631 (685)
Q Consensus 553 ~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~ 631 (685)
++|...++..+...+++++.|||.++.+...+++.+|++.|++ .++.. + ...+.++.|++.+.++ .....
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~-D----~lLlKlIRNiS~h~~~-~k~~f--- 488 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTR-D----PLLLKLIRNISQHDGP-LKELF--- 488 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcc-c----HHHHHHHHHHHhcCch-HHHHH---
Confidence 9986666677777889999999999999999999889999999 44432 2 2355799999999754 23322
Q ss_pred CCcHHHHHHHHhcCC-hHHHHHHHHHHHHHH
Q 039015 632 PSLMGSLYSLLSQGS-SRASKKASALIRILH 661 (685)
Q Consensus 632 ~g~i~~L~~Ll~~g~-~~~k~~A~~lL~~l~ 661 (685)
.+.+..|..++.+++ +...-.+-.+|..|.
T Consensus 489 ~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 489 VDFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 346888888888874 334444555555543
No 11
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.73 E-value=2.1e-18 Score=141.09 Aligned_cols=72 Identities=42% Similarity=0.846 Sum_probs=63.3
Q ss_pred CCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcC
Q 039015 277 TPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNG 348 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~ 348 (685)
+|++|.||||+++|.|||+++|||||||.||++|+..++.+||.|++.++..+++||..|++.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 588999999999999999999999999999999999888999999999999999999999999999999875
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.71 E-value=2.2e-15 Score=167.58 Aligned_cols=286 Identities=19% Similarity=0.188 Sum_probs=232.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc---chh
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC---KSK 455 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~---~~k 455 (685)
..++..+.+|.+.++..|-.|+..|+.+|+.+...|..+.+.|+||.||.+|.+.+.++|.+|+.+|.||+... +||
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 45778899999999999999999999999999999999999999999999999999999999999999998554 579
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc---------------------------------
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE--------------------------------- 502 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~--------------------------------- 502 (685)
..|.+.++|+.++++|+...+.|++++.+++|+||+++|..|..|..
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeee
Confidence 99999999999999999744899999999999999999877766643
Q ss_pred ----------------------CCCcHHHHHHHhcc--------------------------------------------
Q 039015 503 ----------------------NPEAIPALVDMVRD-------------------------------------------- 516 (685)
Q Consensus 503 ----------------------~~g~i~~Lv~lL~~-------------------------------------------- 516 (685)
..|.|..|+..+++
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 44556666555541
Q ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHhcCCCC-
Q 039015 517 ----------------------------------------------------------GTDRSKKNALVAIFGLLMHSG- 537 (685)
Q Consensus 517 ----------------------------------------------------------~~~~~~~~A~~aL~nLs~~~~- 537 (685)
.++.+.++++.||.||+....
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 122333455556666653322
Q ss_pred ----cHHHH-HhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCC-----hhHHH
Q 039015 538 ----NHWRF-LAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTS-----RAGKE 607 (685)
Q Consensus 538 ----n~~~i-v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s-----~~~~e 607 (685)
.+..+ .+..+.++|+++| ..++..++..+.++|.||+.+..++..|. .++++.|+..|..+.. .++.-
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll-~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~ 630 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELL-RNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVR 630 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHH-hcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHH
Confidence 23333 5677899999999 55677899999999999999999999987 6789999999986533 56777
Q ss_pred HHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhhcccC
Q 039015 608 YCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSRASKKASALIRILHEFYERHS 668 (685)
Q Consensus 608 ~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~k~~A~~lL~~l~~~~~~~~ 668 (685)
..+.+|+++...+...++..+ . .+.++.|+.|..+. +++.-+.|..+|..|..+.+-++
T Consensus 631 ~vc~tl~niv~~~~~nAkdl~-~-~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~ 690 (717)
T KOG1048|consen 631 AVCHTLNNIVRKNVLNAKDLL-E-IKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHF 690 (717)
T ss_pred HHHHhHHHHHHHhHHHHHHHH-h-ccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999999987756555444 3 78899999999886 56889999999999998877443
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=8.9e-14 Score=139.94 Aligned_cols=288 Identities=15% Similarity=0.206 Sum_probs=234.6
Q ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchh---
Q 039015 382 NFISDRL--LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSK--- 455 (685)
Q Consensus 382 ~~Lv~~L--~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k--- 455 (685)
..++..| ++.+.+.-...+..++.-|-.++.||+.|++.|+.|.+...|.. +...+...+.++++-|..+++-|
T Consensus 148 ~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~f 227 (461)
T KOG4199|consen 148 AVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVF 227 (461)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeec
Confidence 3445555 45677778888889999888899999999999999999976655 34468888899999998877543
Q ss_pred -------HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHH----HHHH
Q 039015 456 -------SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDR----SKKN 524 (685)
Q Consensus 456 -------~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~----~~~~ 524 (685)
..|+..|++..|++.|+.+.++.....+..+|..|+..++.+..|.+ .|++..|++++.+.+.. ..+.
T Consensus 228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~r~l~k~ 306 (461)
T KOG4199|consen 228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSNEQGNRTLAKT 306 (461)
T ss_pred chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhchhhHHHHHHH
Confidence 46678889999999999988899999999999999999999999999 99999999999875432 4467
Q ss_pred HHHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc-CCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcC-C
Q 039015 525 ALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS-SDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSC-T 601 (685)
Q Consensus 525 A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~-~ 601 (685)
++..|..|+.++.++..+++.|+.+.++.++.. .+++.+..++++++.-|+- .|++...+++.|+-...++-|+.. .
T Consensus 307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV 386 (461)
T ss_pred HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Confidence 888999999999999999999999999998753 4578999999999999976 588888899999988888877754 3
Q ss_pred ChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH--HhhcccCCCCCC
Q 039015 602 SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH--EFYERHSSGSTT 673 (685)
Q Consensus 602 s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~--~~~~~~~~~~~~ 673 (685)
...++.+|+.++.|+..++.+. ...+.. .+++.|.......++.....|.+.|+-|. .+....|.|.+.
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~-~~~~l~--~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~wtg~~~ 457 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAEN-RTILLA--NGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREEWTGAEK 457 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhc-cchHHh--ccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHHhccccc
Confidence 4567889999999999987544 444443 44677777777777777788888888764 344567777543
No 14
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.63 E-value=4.4e-14 Score=143.52 Aligned_cols=236 Identities=18% Similarity=0.225 Sum_probs=193.4
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 380 LANFISDRLL-EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 380 ~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
.++.|+..|+ +.++..+..|+.++.+.+. .+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|+|.+.+|+..|
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 4789999997 4689999999999999886 7899999999999999999999999999999999999999999998887
Q ss_pred HhcCcHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015 459 VESGGLDFIVDMVKK-GLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 537 (685)
-. .++.+.+.+.. ..+.+++..+..+|.+|+..+++...+.. .++.++.+|..|+...+..++++|.|||.++.
T Consensus 92 k~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~ 166 (254)
T PF04826_consen 92 KM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD 166 (254)
T ss_pred HH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHHcCChHHHHHHHHHHHHhccCHH
Confidence 43 57777775544 34678999999999999999999888865 79999999999999999999999999999999
Q ss_pred cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHH-HH-hcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015 538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIA-IL-HHGALDMIMKILDSCTSRAGKEYCVSLLLA 615 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~-i~-~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~ 615 (685)
+...++.++++..++.++..+.+.++...++.++.||..+-..... +. ....-..|.-+++. .+..+.-|..
T Consensus 167 ~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e------~~~~~~~l~~ 240 (254)
T PF04826_consen 167 MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGE------SSQLAKKLQA 240 (254)
T ss_pred HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHcc------HHHHHHHHHH
Confidence 9999999999999999997666788999999999999775332222 22 22234555555543 2244455556
Q ss_pred HhccCcHHHHHH
Q 039015 616 LCINGGANVVAL 627 (685)
Q Consensus 616 L~~~~~~~~~~~ 627 (685)
|..+.+++++..
T Consensus 241 l~~h~d~ev~~~ 252 (254)
T PF04826_consen 241 LANHPDPEVKEQ 252 (254)
T ss_pred HHcCCCHHHhhh
Confidence 666766665543
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.61 E-value=1.5e-14 Score=166.18 Aligned_cols=263 Identities=19% Similarity=0.208 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC---------C---CHHHHHHHHHHhhccccCc-chhHHHH-hc
Q 039015 396 KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS---------K---DSSTQENAIAALLNLSKHC-KSKSMVV-ES 461 (685)
Q Consensus 396 ~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s---------~---~~~~~~~A~~aL~nLs~~~-~~k~~i~-~~ 461 (685)
...|+..|-.++. ++++|..+.+.|++..|-.||.- . ...++..|..+|.||+..+ .||..+- ..
T Consensus 315 lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r 393 (2195)
T KOG2122|consen 315 LCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR 393 (2195)
T ss_pred hHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence 3478888888886 88999999999998888886642 1 2478999999999999877 5577776 68
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHH-hccCCHHHHHHHHHHHHHhcCC-CC
Q 039015 462 GGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDM-VRDGTDRSKKNALVAIFGLLMH-SG 537 (685)
Q Consensus 462 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~-~~ 537 (685)
|+++.||..|... ..++...-+.+|.||+=.. ..++.+.+ .|-+..|+.. |++......+..+.|||||+.+ .+
T Consensus 394 gfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE-~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 394 GFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRE-TGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHh-hhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 9999999999998 8899999999999999544 45666666 8999999985 5666678889999999999976 47
Q ss_pred cHHHHHh-cCChHHHHHHhccC---CChhHHHHHHHHHHHHhc----ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHH
Q 039015 538 NHWRFLA-AGAVPLLLNLLTSS---DSEELITDSLAVLATLAE----KLDGTIAILHHGALDMIMKILDSCTSRAGKEYC 609 (685)
Q Consensus 538 n~~~iv~-~G~v~~Lv~lL~~~---~~~~~~~~al~~L~~La~----~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a 609 (685)
|+..|++ -|++..||.+|.-. ..-.+++.+-+||.|... ++..|..+.+++-+..|++.|++. +-.+..++
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNa 550 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNA 550 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecc
Confidence 9999998 68999999999322 235678889999998754 677788888888899999999998 99999999
Q ss_pred HHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015 610 VSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 610 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 664 (685)
+++||||...+++ .++.+-. .|+++.|..|+++.+..+...+++.|++|-.+.
T Consensus 551 CGTLWNLSAR~p~-DQq~LwD-~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 551 CGTLWNLSARSPE-DQQMLWD-DGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhhcCCHH-HHHHHHh-cccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999998754 4555555 899999999999999888877777777766655
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=3e-13 Score=136.21 Aligned_cols=271 Identities=15% Similarity=0.190 Sum_probs=219.0
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--CCHHHHHHHHHHhhcc-ccCcchhHHHHhcCcHH
Q 039015 389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--KDSSTQENAIAALLNL-SKHCKSKSMVVESGGLD 465 (685)
Q Consensus 389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nL-s~~~~~k~~i~~~g~i~ 465 (685)
.+++.....+++..|..+... +.-+.++.+...++.+|.. ++.++....+..+..- ..|+.||..+++.++++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~----qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHK----QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcC----CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 566777888899988888753 4557888889999998865 5667777777766544 46788999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc---------CCCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCC
Q 039015 466 FIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE---------NPEAIPALVDMVRDG-TDRSKKNALVAIFGLLMH 535 (685)
Q Consensus 466 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~---------~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~ 535 (685)
.+.+.|.+.....+...+.+++..|..+++.|..+|. ..|+...|++.++.+ ++.....+..+|..|+..
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 9998776432456777889999999888876654432 256788999999875 477888999999999999
Q ss_pred CCcHHHHHhcCChHHHHHHhccCCC---hhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHHH
Q 039015 536 SGNHWRFLAAGAVPLLLNLLTSSDS---EELITDSLAVLATLAEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCVS 611 (685)
Q Consensus 536 ~~n~~~iv~~G~v~~Lv~lL~~~~~---~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~ 611 (685)
++.+..+.++|++..|+.++.++.. ..+...++.+|..||+++.++..|++.||.+.++. ++++..+|.+.+.++.
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a 352 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMA 352 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHH
Confidence 9999999999999999999954333 34567899999999999999999999999999999 5666568999999999
Q ss_pred HHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCCh--HHHHHHHHHHHHHHHhhc
Q 039015 612 LLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSS--RASKKASALIRILHEFYE 665 (685)
Q Consensus 612 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~--~~k~~A~~lL~~l~~~~~ 665 (685)
++.-||...+++....+. .|+-...+.-++.... ..+++|.++++.+-.+..
T Consensus 353 ~i~~l~LR~pdhsa~~ie--~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 353 IISILCLRSPDHSAKAIE--AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred HHHHHHhcCcchHHHHHh--cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999888766654 6777777777777643 468999999999876643
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.55 E-value=5.7e-15 Score=117.72 Aligned_cols=63 Identities=52% Similarity=0.981 Sum_probs=60.2
Q ss_pred CccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHH
Q 039015 280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDW 343 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~ 343 (685)
+|.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|++.++..++.+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 4899999999999999999999999999999988 78999999999988999999999999988
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=9.3e-13 Score=133.85 Aligned_cols=197 Identities=24% Similarity=0.293 Sum_probs=174.3
Q ss_pred HHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh
Q 039015 417 LVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE 495 (685)
Q Consensus 417 i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~ 495 (685)
+.+++-+..|+.+|++ .|+.+++.|+.++.|.+.++.+++.|.+.|+++.+..+|.++ ++.+++.|..+|.||+.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChh
Confidence 4677888999999985 789999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHhhcCCCcHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 039015 496 YRKLIGENPEAIPALVDMVRDG--TDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLAT 573 (685)
Q Consensus 496 ~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~ 573 (685)
++..|-. .|+.+++.+.+. +..++..++.+|.||+..++.+..+. +.++.|+.+| ..++..++..++.+|.|
T Consensus 87 n~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL-~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 87 NQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLL-SSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHH-HcCChHHHHHHHHHHHH
Confidence 9999855 688888876654 46788899999999998888777664 4799999999 56678899999999999
Q ss_pred HhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccC
Q 039015 574 LAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCING 620 (685)
Q Consensus 574 La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~ 620 (685)
|+.++.....++.+.++..++.++....+......++.+..+|..+-
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998887546777888888888887643
No 19
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.43 E-value=1.1e-11 Score=138.43 Aligned_cols=249 Identities=19% Similarity=0.181 Sum_probs=197.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc--hhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCc---
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF--NRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHC--- 452 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~--~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~--- 452 (685)
+.|+.|+.+|.+.+.+++.+|+.+|++|..++.. |+..|.+.|+||.++++|.. .|.++++....+|.|||.++
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK 354 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALK 354 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHH
Confidence 4689999999999999999999999999987766 99999999999999999986 89999999999999998872
Q ss_pred ----------------------------------------------------chhHHHHh-cCcHHHHHHHhcC-----C
Q 039015 453 ----------------------------------------------------KSKSMVVE-SGGLDFIVDMVKK-----G 474 (685)
Q Consensus 453 ----------------------------------------------------~~k~~i~~-~g~i~~Lv~lL~~-----~ 474 (685)
+.|+.|.+ .|.|..|+..+++ .
T Consensus 355 ~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~ 434 (717)
T KOG1048|consen 355 MLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSD 434 (717)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhcc
Confidence 22445553 6788888887751 1
Q ss_pred CCHHHHHHHHHHHHHhcCchh-----------------------------------------------------------
Q 039015 475 LKVEARQHAAATLFYIASIEE----------------------------------------------------------- 495 (685)
Q Consensus 475 ~~~e~~~~Aa~~L~~Ls~~~~----------------------------------------------------------- 495 (685)
.+....++++.+|.||+.--+
T Consensus 435 ~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~L 514 (717)
T KOG1048|consen 435 LDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWL 514 (717)
T ss_pred ccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceee
Confidence 134445666666666653211
Q ss_pred ------------------------------------------HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 039015 496 ------------------------------------------YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLL 533 (685)
Q Consensus 496 ------------------------------------------~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 533 (685)
.+..++....+.|.|+++|+.+++.++..++.+|.||+
T Consensus 515 w~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls 594 (717)
T KOG1048|consen 515 WHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLS 594 (717)
T ss_pred ecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhc
Confidence 12222114567899999999999999999999999999
Q ss_pred CCCCcHHHHHhcCChHHHHHHhccCC-----ChhHHHHHHHHHHHHh-cChhcHHHHHhcCChHHHHHHhhcCCChhHHH
Q 039015 534 MHSGNHWRFLAAGAVPLLLNLLTSSD-----SEELITDSLAVLATLA-EKLDGTIAILHHGALDMIMKILDSCTSRAGKE 607 (685)
Q Consensus 534 ~~~~n~~~iv~~G~v~~Lv~lL~~~~-----~~~~~~~al~~L~~La-~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e 607 (685)
.+..|+..|- .++++-|++.|-... ++++...++.+|.++. .+..+...+.+.++++.|+.|.++..+++.-+
T Consensus 595 ~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~k 673 (717)
T KOG1048|consen 595 RDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFK 673 (717)
T ss_pred cCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHH
Confidence 9999998777 889999999995333 3788889999999997 67899999999999999999888766888888
Q ss_pred HHHHHHHHHhccCcHHHHHHHHh
Q 039015 608 YCVSLLLALCINGGANVVALLVK 630 (685)
Q Consensus 608 ~a~~~L~~L~~~~~~~~~~~l~~ 630 (685)
.|..+|..|=.. .+..-...+
T Consensus 674 aAs~vL~~lW~y--~eLh~~~kk 694 (717)
T KOG1048|consen 674 AASSVLDVLWQY--KELHFKLKK 694 (717)
T ss_pred HHHHHHHHHHHH--HHHhhhHhh
Confidence 888888777665 344444443
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.39 E-value=1.2e-10 Score=131.23 Aligned_cols=275 Identities=17% Similarity=0.161 Sum_probs=214.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
...++|...|.+.++.+|.-+++.|+.++.++......+.+.+.++.++.+|.++|..+...|+.+|.+|+.++.+-..+
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 35688889999999999999999999999866666777888999999999999999999999999999999999888888
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 537 (685)
+..+.+..|..++.+. +..+|..+..++.+++... +....+.. .|.++.++..|.+.+.-++.+|+..|..|+..+.
T Consensus 157 ~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~~dDiLvqlnalell~~La~~~~ 234 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELDSDDILVQLNALELLSELAETPH 234 (503)
T ss_pred hCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence 8999999999999987 7889999999999998665 55555555 8999999999999888899999999999999888
Q ss_pred cHHHHHhcCChHHHHHHhccCCCh-----hHHHHHHHHHHHHhcC-hhcHHHHHhcC-ChHHHHHHhhcCCChhHHHHHH
Q 039015 538 NHWRFLAAGAVPLLLNLLTSSDSE-----ELITDSLAVLATLAEK-LDGTIAILHHG-ALDMIMKILDSCTSRAGKEYCV 610 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~~~~~~-----~~~~~al~~L~~La~~-~~~~~~i~~~g-~v~~Lv~lL~~~~s~~~~e~a~ 610 (685)
+...+.+.|+++.|.+++.....+ -+....+....+++.. +. ..+.... .+..+..++.+. ++..+..|+
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~--~v~~~~p~~~~~l~~~~~s~-d~~~~~~A~ 311 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ--EVLELYPAFLERLFSMLESQ-DPTIREVAF 311 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHhCCC-ChhHHHHHH
Confidence 999999999999999999543222 2334455777777774 22 1111111 134444556666 888999999
Q ss_pred HHHHHHhccCcHHHHHHH-HhcCC----cHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015 611 SLLLALCINGGANVVALL-VKSPS----LMGSLYSLLSQGSSRASKKASALIRIL 660 (685)
Q Consensus 611 ~~L~~L~~~~~~~~~~~l-~~~~g----~i~~L~~Ll~~g~~~~k~~A~~lL~~l 660 (685)
.++..+|.. .+....+ .+..+ ++...-....+|+...|-++-..+..+
T Consensus 312 dtlg~igst--~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 312 DTLGQIGST--VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHHHHhCC--HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 999999977 4555555 33222 344444455556666666665555555
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.30 E-value=2e-10 Score=119.42 Aligned_cols=266 Identities=13% Similarity=0.106 Sum_probs=206.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC----CC---HHHHHHHHHHhhccccC
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS----KD---SSTQENAIAALLNLSKH 451 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s----~~---~~~~~~A~~aL~nLs~~ 451 (685)
+.++.|.+..+|.+.++-.+..+.|.++|..+.++|..+.+.||-..++++|+. ++ .+...-+...|.|-+.+
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~ 166 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD 166 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence 357888888888889999999999999999999999999999997777777765 22 35566677788888877
Q ss_pred cch-hHHHHhcCcHHHHHHHhcCCC---------------------------------------------CHHHHHHHHH
Q 039015 452 CKS-KSMVVESGGLDFIVDMVKKGL---------------------------------------------KVEARQHAAA 485 (685)
Q Consensus 452 ~~~-k~~i~~~g~i~~Lv~lL~~~~---------------------------------------------~~e~~~~Aa~ 485 (685)
.+. +...++.|+++.|+..+.=++ .++.++....
T Consensus 167 ~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe 246 (604)
T KOG4500|consen 167 SRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE 246 (604)
T ss_pred cHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence 765 889999999998887653221 1233333344
Q ss_pred HHHHhcCchhHHHHhhc-------------------------------------------------CCCcHHHHHHHhcc
Q 039015 486 TLFYIASIEEYRKLIGE-------------------------------------------------NPEAIPALVDMVRD 516 (685)
Q Consensus 486 ~L~~Ls~~~~~~~~i~~-------------------------------------------------~~g~i~~Lv~lL~~ 516 (685)
+|...+.++..+-.+.+ .+..+..++.++.+
T Consensus 247 ila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S 326 (604)
T KOG4500|consen 247 ILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRS 326 (604)
T ss_pred HHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcC
Confidence 44444444443333332 12255666666666
Q ss_pred CCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc----CCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHH
Q 039015 517 GTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS----SDSEELITDSLAVLATLAEKLDGTIAILHHGALDM 592 (685)
Q Consensus 517 ~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~----~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~ 592 (685)
.+.+....+.-||.|++..++++..+++.|.+..|+.+|.. +++...+..++++|.|++--..++..+..+|.+..
T Consensus 327 ~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvtea 406 (604)
T KOG4500|consen 327 DDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEA 406 (604)
T ss_pred CchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHH
Confidence 66666677888999999999999999999999999999954 34677889999999999999999999999999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCC
Q 039015 593 IMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGS 646 (685)
Q Consensus 593 Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~ 646 (685)
++..++.. +|.++..-.+.|..+-.. .+.....+.+....+..|++...+.+
T Consensus 407 IL~~lk~~-~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 407 ILLQLKLA-SPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPD 458 (604)
T ss_pred HHHHHHhc-CCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCc
Confidence 99999998 999999999998776544 35577778877778999999988774
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=5.2e-10 Score=117.51 Aligned_cols=280 Identities=17% Similarity=0.207 Sum_probs=203.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
+..+..||+.|..++.+.-.-+..-|..|+. -.+|+..+.+.|.|..|+++....+++++...+..|.|||.+...|..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 3467888899988888877788888888987 568999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCC-HHHHHHHHHHHHHhcCCC
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT-DRSKKNALVAIFGLLMHS 536 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~ 536 (685)
|+..|.+|.++.+|.+. .-..-|...|+++|.+++.+..+.- ..+|+.|++.+-.++ .++-...+..-.|||.+.
T Consensus 382 Mv~~GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HhhccchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 99999999999999866 3345689999999999999999988 899999999776654 333333333335676666
Q ss_pred CcHHHHHhcCChHHH-------------------------------------HHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015 537 GNHWRFLAAGAVPLL-------------------------------------LNLLTSSDSEELITDSLAVLATLAEKLD 579 (685)
Q Consensus 537 ~n~~~iv~~G~v~~L-------------------------------------v~lL~~~~~~~~~~~al~~L~~La~~~~ 579 (685)
.|.+.+++-.++..| ...+..+.++...-+|+++|+||+-..-
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl 537 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL 537 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence 665555443333333 3333234556677788888888874222
Q ss_pred c--------------------------------------------HHHHHhcCChHHHHHHhhcCC-ChhHHHHHHHHHH
Q 039015 580 G--------------------------------------------TIAILHHGALDMIMKILDSCT-SRAGKEYCVSLLL 614 (685)
Q Consensus 580 ~--------------------------------------------~~~i~~~g~v~~Lv~lL~~~~-s~~~~e~a~~~L~ 614 (685)
. ...+..++.|+.++++|+..+ .++..-.-+-+..
T Consensus 538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~ 617 (791)
T KOG1222|consen 538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFL 617 (791)
T ss_pred CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 1 122233344566677666532 2222223333344
Q ss_pred HHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015 615 ALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 664 (685)
.+-.+ +..+..+.++...-..|..|+++.+..+++-+...|-++..+.
T Consensus 618 Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 618 QFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred HHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 44555 5556677776778889999999999998888777777776653
No 23
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.25 E-value=4.8e-11 Score=138.04 Aligned_cols=226 Identities=16% Similarity=0.125 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-ch-hHHHHhcCcHHHHHHH
Q 039015 394 EEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KS-KSMVVESGGLDFIVDM 470 (685)
Q Consensus 394 ~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~-k~~i~~~g~i~~Lv~l 470 (685)
..|.-|..+|.||..++..|+..+... |++..+|..|.+...+++..-..+|.|||=.- .| |+.+-+.|-+..|+..
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~ 445 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC 445 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence 357778899999999999999998876 99999999999887888889999999998543 34 7777789999999987
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccC----CHHHHHHHHHHHHHhcCC----CCcHHH
Q 039015 471 VKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDG----TDRSKKNALVAIFGLLMH----SGNHWR 541 (685)
Q Consensus 471 L~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~----~~n~~~ 541 (685)
--...........+.+||||+.+. +||..|....|++.+||.+|.-. +....++|-..|.|.+.+ .+.|+.
T Consensus 446 al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQI 525 (2195)
T KOG2122|consen 446 ALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQI 525 (2195)
T ss_pred HHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHH
Confidence 544426677888999999999877 99999999899999999999643 356677888999998754 446778
Q ss_pred HHhcCChHHHHHHhccCCChhHHHHHHHHHHHH-hcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccC
Q 039015 542 FLAAGAVPLLLNLLTSSDSEELITDSLAVLATL-AEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCING 620 (685)
Q Consensus 542 iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L-a~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~ 620 (685)
+.+...+..|++.| .+++-.++.+++++|+|| |.+++.++.+.+.|+|+.|..++++. +..+-+-++++|.||-.+.
T Consensus 526 LR~~NCLq~LLQ~L-KS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 526 LRRHNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHhhHHHHHHHHh-hhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence 88999999999999 566778889999999999 66899999999999999999999987 8888899999999998875
Q ss_pred c
Q 039015 621 G 621 (685)
Q Consensus 621 ~ 621 (685)
+
T Consensus 604 P 604 (2195)
T KOG2122|consen 604 P 604 (2195)
T ss_pred c
Confidence 4
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.18 E-value=6.7e-09 Score=117.04 Aligned_cols=273 Identities=18% Similarity=0.209 Sum_probs=212.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh-HHHHhcC
Q 039015 384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK-SMVVESG 462 (685)
Q Consensus 384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k-~~i~~~g 462 (685)
+...|.+.+.+....++..|..+.... . -..+ ..+..+.|...|.++++.++..+++.|.++..+++.. ..+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~-~~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-S-PDSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-C-HHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 677787777887778888888877522 2 2222 5678899999999999999999999999999888774 4445899
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-cHHH
Q 039015 463 GLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG-NHWR 541 (685)
Q Consensus 463 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~ 541 (685)
.++.++..|..+ +.++...|+.+|..|+..+.....+.. .+.+..|..++...++..+..+..++.+++...+ ....
T Consensus 120 l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l~~-~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 120 LLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQLFD-SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred HHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHHhC-cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999 999999999999999998887777877 7779999999988788888899999999986654 6666
Q ss_pred HHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCC-ChhHH----HHHHHHHHHH
Q 039015 542 FLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCT-SRAGK----EYCVSLLLAL 616 (685)
Q Consensus 542 iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~-s~~~~----e~a~~~L~~L 616 (685)
+..+|.++.+++.| .+++.-++..|+.+|..||..+.|..-+.+.|.++.|..++.... +|... -..+....++
T Consensus 198 ~~~sgll~~ll~eL-~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~l 276 (503)
T PF10508_consen 198 VVNSGLLDLLLKEL-DSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNL 276 (503)
T ss_pred HHhccHHHHHHHHh-cCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHH
Confidence 77799999999999 457788899999999999999999999999999999999876531 23111 1233455556
Q ss_pred hccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015 617 CINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE 665 (685)
Q Consensus 617 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~ 665 (685)
+...+..+.... +.++..|..++.+++...+..|-..+..+....+
T Consensus 277 a~~~~~~v~~~~---p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 277 ARVSPQEVLELY---PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred HhcChHHHHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 654434333222 3456667777777777777777766666654433
No 25
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=3.9e-10 Score=118.43 Aligned_cols=191 Identities=18% Similarity=0.223 Sum_probs=163.2
Q ss_pred HHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc
Q 039015 436 STQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR 515 (685)
Q Consensus 436 ~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~ 515 (685)
.+...|+..|.||+.+-.--..|...+.+..||..|... +.+........|..||..++++..+++ .|.|..|+++..
T Consensus 278 qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~~M~~-~~iveKL~klfp 355 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKIVMEQ-NGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchHHHHh-ccHHHHHHHhcC
Confidence 445678889999999888888899999999999999999 899999999999999999999999999 999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH
Q 039015 516 DGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK 595 (685)
Q Consensus 516 ~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~ 595 (685)
...++.++..+..|+||+.+.+++.+|+..|.+|.|+.+|.++.. ..-|+.+|..++.+...+..+.....|+.+++
T Consensus 356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk 432 (791)
T KOG1222|consen 356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMK 432 (791)
T ss_pred CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999954433 34589999999999999999999999999999
Q ss_pred HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCC
Q 039015 596 ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPS 633 (685)
Q Consensus 596 lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g 633 (685)
.+-.++..++.-.-++...+||.+. .-.+.+..|.|
T Consensus 433 ~v~~~~~~~vdl~lia~ciNl~lnk--RNaQlvceGqg 468 (791)
T KOG1222|consen 433 DVLSGTGSEVDLALIALCINLCLNK--RNAQLVCEGQG 468 (791)
T ss_pred HHHhcCCceecHHHHHHHHHHHhcc--ccceEEecCcc
Confidence 4444535666666677778999763 33344444444
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.16 E-value=4.1e-10 Score=101.07 Aligned_cols=117 Identities=31% Similarity=0.407 Sum_probs=107.0
Q ss_pred HHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch
Q 039015 416 CLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE 494 (685)
Q Consensus 416 ~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 494 (685)
.+++.|+++.|+.+|.+.+..++..|+.+|.+++.+ ++.+..+++.|+++.++.+|..+ +..++..|+++|.+|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence 467889999999999999999999999999999988 57788888999999999999998 9999999999999999877
Q ss_pred -hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 495 -EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 495 -~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
..+..+.. .|+++.|++++..++...++.|+++|.||+.
T Consensus 81 ~~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 55666666 8999999999999999999999999999873
No 27
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.15 E-value=2.2e-11 Score=87.83 Aligned_cols=39 Identities=36% Similarity=0.911 Sum_probs=31.2
Q ss_pred CcCccccCCCceeccCcccccHHHHHHHHHcCC---CCCCCC
Q 039015 283 CPISLEIMKDPVTLSTGHTYDRASILKWFRAGN---STCPKT 321 (685)
Q Consensus 283 CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~---~~CP~c 321 (685)
||||+++|.|||+++|||+||+.||.+|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998632 479987
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.14 E-value=7.7e-10 Score=99.33 Aligned_cols=117 Identities=28% Similarity=0.425 Sum_probs=106.1
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc-hhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015 457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI-EEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH 535 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 535 (685)
.+++.|+++.++.+|+++ +.+.+..++.+|.+++.. ++++..+.. .|+++.|+.+|.+++++++..|+++|.||+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 466899999999999999 899999999999999988 688888887 89999999999999999999999999999987
Q ss_pred CC-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 039015 536 SG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE 576 (685)
Q Consensus 536 ~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~ 576 (685)
.+ ....+++.|+++.|+++| .+.+..+++.++.+|.+|+.
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 74 667788899999999999 56678999999999999874
No 29
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.12 E-value=3.6e-11 Score=114.26 Aligned_cols=60 Identities=28% Similarity=0.486 Sum_probs=52.6
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc---------------CCCCCCCCCccccCCCCcccHH
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA---------------GNSTCPKTGERLQSKELLVNLV 335 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~---------------~~~~CP~c~~~l~~~~l~~n~~ 335 (685)
+..++|.||||++.+.|||+++|||.||+.||.+|+.. +...||.|+..++...++|.+.
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 56678999999999999999999999999999999852 2458999999999888888653
No 30
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.08 E-value=1.2e-10 Score=123.95 Aligned_cols=72 Identities=19% Similarity=0.319 Sum_probs=65.8
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNG 348 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~ 348 (685)
.+...+.|+||.+++.+||+++|||+||..||..|+.. ...||.|+..+....+.+|..+.++|+.|...+.
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLRP 93 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhhH
Confidence 67889999999999999999999999999999999987 5689999999988789999999999999976543
No 31
>PRK09687 putative lyase; Provisional
Probab=98.97 E-value=4.7e-08 Score=101.66 Aligned_cols=232 Identities=16% Similarity=0.137 Sum_probs=124.8
Q ss_pred hhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch
Q 039015 375 GAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS 454 (685)
Q Consensus 375 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~ 454 (685)
+.....++.|...|.+.+..++..|++.|..+-. ..+++.+..++.++++.++..|+++|..|......
T Consensus 19 ~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~ 87 (280)
T PRK09687 19 QCKKLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC 87 (280)
T ss_pred HHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc
Confidence 3445567888888888888888888877765532 33456667777777888888888888776542221
Q ss_pred hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHH--------------------H-------HhhcCCCcH
Q 039015 455 KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYR--------------------K-------LIGENPEAI 507 (685)
Q Consensus 455 k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~--------------------~-------~i~~~~g~i 507 (685)
...+++.|..++.+..+..+|..|+.+|.++....... . .++. ..++
T Consensus 88 -----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai 161 (280)
T PRK09687 88 -----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAI 161 (280)
T ss_pred -----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHH
Confidence 22345666666333336777777777777764321100 0 0011 2344
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhc
Q 039015 508 PALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHH 587 (685)
Q Consensus 508 ~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~ 587 (685)
+.|+.+|.+.++.++..|+.+|.++.... ..+++.|+.+| .+.+..++..|+..|..+-. .
T Consensus 162 ~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L-~D~~~~VR~~A~~aLg~~~~----------~ 222 (280)
T PRK09687 162 PLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAML-QDKNEEIRIEAIIGLALRKD----------K 222 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHh-cCCChHHHHHHHHHHHccCC----------h
Confidence 44444444444444444444444441100 12344444444 34444444444444443311 1
Q ss_pred CChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHh-cCChHHHHHHHHHHH
Q 039015 588 GALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLS-QGSSRASKKASALIR 658 (685)
Q Consensus 588 g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-~g~~~~k~~A~~lL~ 658 (685)
.++|.|++.++++ . .+..++.+|..+.. .-++|.|..++. +++++++++|.+.|+
T Consensus 223 ~av~~Li~~L~~~-~--~~~~a~~ALg~ig~-------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 223 RVLSVLIKELKKG-T--VGDLIIEAAGELGD-------------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC-------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 2355555555543 2 23333333333221 114677777876 667788888877665
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.93 E-value=3e-10 Score=113.92 Aligned_cols=71 Identities=21% Similarity=0.381 Sum_probs=64.9
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDN 347 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~ 347 (685)
.+.+-++|-||+++|+-|++++||||||.-||..++.. ++.||.|....+...++-|+.+..+|+.+...+
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence 55677999999999999999999999999999999998 899999999999999999999999998875553
No 33
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.91 E-value=1.8e-08 Score=106.98 Aligned_cols=232 Identities=17% Similarity=0.165 Sum_probs=165.9
Q ss_pred CHHHHHHhhcC--CCHHHHHHHHHHhhccccCcchhHH-HHh------cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 039015 422 CIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKSKSM-VVE------SGGLDFIVDMVKKGLKVEARQHAAATLFYIAS 492 (685)
Q Consensus 422 ~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~-i~~------~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~ 492 (685)
....++.+|+. .+.++....+..+..|..++..+.. +.. .....+++.++.++ +.-++..|+.+|..|..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 35566666654 5889999999999998877765443 332 23688999989888 99999999999999987
Q ss_pred chhHHHHhhcCCCcHHHHHHHhcc----CCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHh------ccCCChh
Q 039015 493 IEEYRKLIGENPEAIPALVDMVRD----GTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLL------TSSDSEE 562 (685)
Q Consensus 493 ~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL------~~~~~~~ 562 (685)
....+..-.. .+.++.++.++.+ .+......|+.+|.+|...++.|..+.+.|+++.|+.+| .+..+..
T Consensus 135 ~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 135 QGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp STTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred cCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 6655444433 4578888888875 233455789999999999999999999999999999999 3445678
Q ss_pred HHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHH
Q 039015 563 LITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLL 642 (685)
Q Consensus 563 ~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll 642 (685)
+.-.++-+++.|+.+++....+.+.+.++.|+++++..+...+..-++++|.|++..+.......|.. .|+.+.|..|.
T Consensus 214 l~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~~l~~l~~L~ 292 (312)
T PF03224_consen 214 LQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CGLLKTLQNLS 292 (312)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-ccHHHHHHHHh
Confidence 88999999999999999999999988899999999987688899999999999998876656666665 56666666655
Q ss_pred hcC--ChHHHHHHHHH
Q 039015 643 SQG--SSRASKKASAL 656 (685)
Q Consensus 643 ~~g--~~~~k~~A~~l 656 (685)
... ++...+--..+
T Consensus 293 ~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 293 ERKWSDEDLTEDLEFL 308 (312)
T ss_dssp SS--SSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHH
Confidence 443 55555544443
No 34
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.87 E-value=1.5e-09 Score=77.33 Aligned_cols=38 Identities=37% Similarity=0.855 Sum_probs=33.6
Q ss_pred CcCccccCCCc-eeccCcccccHHHHHHHHHcCCCCCCCC
Q 039015 283 CPISLEIMKDP-VTLSTGHTYDRASILKWFRAGNSTCPKT 321 (685)
Q Consensus 283 CpIc~~~m~dP-v~~~cghtfcr~ci~~~~~~~~~~CP~c 321 (685)
||||.+.+.+| ++++|||+||+.||.+|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 7899987
No 35
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.84 E-value=1.2e-07 Score=100.69 Aligned_cols=212 Identities=20% Similarity=0.219 Sum_probs=160.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHh------hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVE------VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~------~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
|+..+ +.+.+...-++..+..+...++.....+.. .....+++++|.++|.-++..|+.+|..|......+..
T Consensus 63 lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~ 141 (312)
T PF03224_consen 63 LLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSE 141 (312)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--H
T ss_pred HHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcccc
Confidence 33444 567888889999999999877766655555 23688899999999999999999999999877766554
Q ss_pred HHhcCcHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHh------cc-CCHHHHHHHHH
Q 039015 458 VVESGGLDFIVDMVKKGL---KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMV------RD-GTDRSKKNALV 527 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~---~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL------~~-~~~~~~~~A~~ 527 (685)
-...+.++.++..|++.. +.+.+..|+..|.+|...+++|..+.+ .|+++.|+.++ .+ .+.+..-.++-
T Consensus 142 ~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 142 KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 444677888888887632 345568999999999999999999999 99999999999 22 22567779999
Q ss_pred HHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh--cHHHHHhcCChHHHHHHh
Q 039015 528 AIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD--GTIAILHHGALDMIMKIL 597 (685)
Q Consensus 528 aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~--~~~~i~~~g~v~~Lv~lL 597 (685)
++|.|+.+++....+...+.|+.|+++++....+.+..-++++|.||..... ....++..|+++.+-.+.
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 9999999999999999999999999999877889999999999999998766 677777766555444433
No 36
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.80 E-value=1.7e-06 Score=93.93 Aligned_cols=273 Identities=11% Similarity=0.061 Sum_probs=195.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCC-CHHHHHHHHHHhhccccCcchhHHHHhcC
Q 039015 384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSK-DSSTQENAIAALLNLSKHCKSKSMVVESG 462 (685)
Q Consensus 384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~-~~~~~~~A~~aL~nLs~~~~~k~~i~~~g 462 (685)
++..|..++.-.+..|+..|..+...+..+.......-....|...|.+. +...+.-|+.+|.+|...++.|..+.+.+
T Consensus 106 fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~ 185 (429)
T cd00256 106 FFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD 185 (429)
T ss_pred HHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc
Confidence 34577778888899999999988765543322211111334556666653 47788889999999999999999999988
Q ss_pred cHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCC-HHHHHHHHHHHHHhcCCC----
Q 039015 463 GLDFIVDMVKKGL-KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT-DRSKKNALVAIFGLLMHS---- 536 (685)
Q Consensus 463 ~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~---- 536 (685)
+++.|+.+|+... +...+-+++-+++-||++++....... .+.|+.|+++++... ..+..-++.+|.||....
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~ 264 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDRE 264 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Confidence 9999999998753 568889999999999999987777765 899999999998754 678889999999998743
Q ss_pred ---CcHHHHHhcCChHHHHHHhccC--CChhHHHHHHHHHHHHh-------c------------------C------hhc
Q 039015 537 ---GNHWRFLAAGAVPLLLNLLTSS--DSEELITDSLAVLATLA-------E------------------K------LDG 580 (685)
Q Consensus 537 ---~n~~~iv~~G~v~~Lv~lL~~~--~~~~~~~~al~~L~~La-------~------------------~------~~~ 580 (685)
.....|++.|+.+.+-.+. .. .++++.+..-.+-..|. + | .++
T Consensus 265 ~~~~~~~~mv~~~l~~~l~~L~-~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN 343 (429)
T cd00256 265 VKKTAALQMVQCKVLKTLQSLE-QRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWREN 343 (429)
T ss_pred hhhhHHHHHHHcChHHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHH
Confidence 2345677777766544444 32 34555444333222222 1 1 234
Q ss_pred HHHHHhcCC--hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 039015 581 TIAILHHGA--LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIR 658 (685)
Q Consensus 581 ~~~i~~~g~--v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~ 658 (685)
...+-+.+. +..|+++|..+.++.+..-|+-=+..++.+-| ..+..+.+ -|+-..+..|+.+.++.++..|-..++
T Consensus 344 ~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P-~gr~i~~~-lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 344 ADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYP-RGKDVVEQ-LGGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCc-cHHHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 455655554 68888888654467777777777888888753 34455555 789999999999999999998877766
Q ss_pred HH
Q 039015 659 IL 660 (685)
Q Consensus 659 ~l 660 (685)
.|
T Consensus 422 kl 423 (429)
T cd00256 422 KL 423 (429)
T ss_pred HH
Confidence 54
No 37
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.8e-07 Score=93.83 Aligned_cols=186 Identities=20% Similarity=0.193 Sum_probs=152.4
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhHHHHhcCcHHHH
Q 039015 389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFI 467 (685)
Q Consensus 389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~i~~L 467 (685)
.+.+.+.+..|+..|..++. +.+|..-+...|++++++..|.+.+..+++.|+++|...+.++ .....+++.|+++.|
T Consensus 93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 45688999999999999996 8899999999999999999999999999999999999998776 569999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCchh-HHHHhhcCCCcHHHHHHHhccC--CHHHHHHHHHHHHHhcCCC-CcHHHHH
Q 039015 468 VDMVKKGLKVEARQHAAATLFYIASIEE-YRKLIGENPEAIPALVDMVRDG--TDRSKKNALVAIFGLLMHS-GNHWRFL 543 (685)
Q Consensus 468 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~-~n~~~iv 543 (685)
+.+|.+..+..++.+|..++.+|..+.. ....+-. .+++..|.+.++++ +...+..|+..|..|.... .....+.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 9999977678889999999999998774 4445555 66799999999984 5778888999999888544 4555555
Q ss_pred hcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015 544 AAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 544 ~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~ 577 (685)
..|....++.+. +..+....+.++.++..+...
T Consensus 251 ~~~f~~~~~~l~-~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 251 SLGFQRVLENLI-SSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HhhhhHHHHHHh-hccchhhhHHHHHHHHHHHHH
Confidence 566666666666 555666777777766665553
No 38
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.7e-06 Score=96.61 Aligned_cols=261 Identities=16% Similarity=0.236 Sum_probs=197.5
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcc--
Q 039015 379 LLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCK-- 453 (685)
Q Consensus 379 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~-- 453 (685)
.+|+.|+....+ .=.+.|+.|+..|..+++ .+|..++..| +++|+..|.. .|+++...++..++++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 369999999854 457889999999999998 6788877665 7888998876 689999999999999987763
Q ss_pred ----h-h------HHH----H-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhc
Q 039015 454 ----S-K------SMV----V-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVR 515 (685)
Q Consensus 454 ----~-k------~~i----~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~ 515 (685)
+ + .+| + ..+-|..++..+... +--+|..|+..|.+|-... +.+..+...+-+|..|+.+|.
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 2 2 222 2 578899999999988 8899999999999886544 788888776899999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCcHHHHHh-cCChHHHHHHhccCC--C-hhHHHHHHHHHHHHhcChh-cHHHHHhcCCh
Q 039015 516 DGTDRSKKNALVAIFGLLMHSGNHWRFLA-AGAVPLLLNLLTSSD--S-EELITDSLAVLATLAEKLD-GTIAILHHGAL 590 (685)
Q Consensus 516 ~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-~G~v~~Lv~lL~~~~--~-~~~~~~al~~L~~La~~~~-~~~~i~~~g~v 590 (685)
+.-...+..|+-.|..|+.+..+.++++. ..+...|..++...+ + .-+.+.|+.+|-||-.+.. ++.-+.+.+-|
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 87888899999999999999998888887 689999999996433 2 3588999999999988654 55555555559
Q ss_pred HHHHHHhhcCC--Ch----h------HHHHHHHHHHHHhccCc-----HHHHHHHHhcCCcHHHHHHHHhcC
Q 039015 591 DMIMKILDSCT--SR----A------GKEYCVSLLLALCINGG-----ANVVALLVKSPSLMGSLYSLLSQG 645 (685)
Q Consensus 591 ~~Lv~lL~~~~--s~----~------~~e~a~~~L~~L~~~~~-----~~~~~~l~~~~g~i~~L~~Ll~~g 645 (685)
|.|.++|...- +. + ..-.++.++..+..-+. .....++.. .+++..|..++-+.
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~s-s~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVS-SHLLDVLCTILMHP 327 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cchHHHHHHHHcCC
Confidence 99998775310 21 1 11235555555554332 234456666 67777777666544
No 39
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.9e-09 Score=103.04 Aligned_cols=59 Identities=22% Similarity=0.484 Sum_probs=52.2
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHHHc--CCCCCCCCCccccCCCCcccHHH
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA--GNSTCPKTGERLQSKELLVNLVL 336 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~--~~~~CP~c~~~l~~~~l~~n~~l 336 (685)
-..|.|.||++.-+|||++.|||-||..||++|+.. ....||+|+..++.+.++|-+.-
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 457999999999999999999999999999999984 35578999999999999886543
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.76 E-value=2.2e-09 Score=82.40 Aligned_cols=59 Identities=24% Similarity=0.488 Sum_probs=34.4
Q ss_pred CCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhH
Q 039015 279 DDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRII 340 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i 340 (685)
.-++|++|.++|++||.+ .|.|.||+.||...+.. .||.|..+....+++.|..|.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 458999999999999975 89999999999875543 499999999999999999999886
No 41
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.69 E-value=1.4e-08 Score=73.27 Aligned_cols=39 Identities=44% Similarity=0.977 Sum_probs=36.4
Q ss_pred CcCccccCCCce-eccCcccccHHHHHHHHH-cCCCCCCCC
Q 039015 283 CPISLEIMKDPV-TLSTGHTYDRASILKWFR-AGNSTCPKT 321 (685)
Q Consensus 283 CpIc~~~m~dPv-~~~cghtfcr~ci~~~~~-~~~~~CP~c 321 (685)
||||.+.+.+|+ +++|||+||+.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999999 567889987
No 42
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.68 E-value=9.4e-09 Score=74.07 Aligned_cols=36 Identities=31% Similarity=0.711 Sum_probs=23.4
Q ss_pred CcCccccCCC----ceeccCcccccHHHHHHHHHcC---CCCCC
Q 039015 283 CPISLEIMKD----PVTLSTGHTYDRASILKWFRAG---NSTCP 319 (685)
Q Consensus 283 CpIc~~~m~d----Pv~~~cghtfcr~ci~~~~~~~---~~~CP 319 (685)
||||.+ |.+ |+.++|||+||+.||++++..+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999853 56777
No 43
>PRK09687 putative lyase; Provisional
Probab=98.61 E-value=1.4e-06 Score=90.68 Aligned_cols=196 Identities=15% Similarity=0.146 Sum_probs=138.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHh-hcCCCHHHHHHHHHHhhccccCcc-----
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKL-LSSKDSSTQENAIAALLNLSKHCK----- 453 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~l-L~s~~~~~~~~A~~aL~nLs~~~~----- 453 (685)
.+..+...+.+.++.+|..|++.|..+-... .. ..-++|.|..+ +.++++.++..|+.+|.++.....
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~ 128 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPK 128 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchH
Confidence 3566677778889999999999888875311 11 22356777766 567888899999999888742211
Q ss_pred -------------h--hHHHH-------hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHH
Q 039015 454 -------------S--KSMVV-------ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALV 511 (685)
Q Consensus 454 -------------~--k~~i~-------~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv 511 (685)
. |...+ ...+++.|+.+|+.. +.++|..|+.+|..+.. .. ..+++.|+
T Consensus 129 a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~--------~~-~~~~~~L~ 198 (280)
T PRK09687 129 IVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDP-NGDVRNWAAFALNSNKY--------DN-PDIREAFV 198 (280)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCC--------CC-HHHHHHHH
Confidence 1 11111 244677888888877 77888888888877722 12 46899999
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChH
Q 039015 512 DMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALD 591 (685)
Q Consensus 512 ~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~ 591 (685)
.+|.+.+..++..|+.+|..+ -+..+||.|++.|. +++ +...++.+|..+.. ..++|
T Consensus 199 ~~L~D~~~~VR~~A~~aLg~~----------~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~----------~~a~p 255 (280)
T PRK09687 199 AMLQDKNEEIRIEAIIGLALR----------KDKRVLSVLIKELK-KGT--VGDLIIEAAGELGD----------KTLLP 255 (280)
T ss_pred HHhcCCChHHHHHHHHHHHcc----------CChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCC----------HhHHH
Confidence 999999999999999999775 23368999999994 333 55666666666644 13589
Q ss_pred HHHHHhhcCCChhHHHHHHHHHH
Q 039015 592 MIMKILDSCTSRAGKEYCVSLLL 614 (685)
Q Consensus 592 ~Lv~lL~~~~s~~~~e~a~~~L~ 614 (685)
.|..+++...++.++..|..+|.
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHHh
Confidence 99998873338899999888774
No 44
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.4e-08 Score=99.47 Aligned_cols=54 Identities=24% Similarity=0.573 Sum_probs=48.8
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKEL 330 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l 330 (685)
..+..++|.+|++-+.+|..++|||.||.+||..|..+ ...||.||..+++.++
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 56777999999999999999999999999999999998 6779999999877654
No 45
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.61 E-value=2.5e-08 Score=75.19 Aligned_cols=46 Identities=26% Similarity=0.536 Sum_probs=41.2
Q ss_pred CccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 280 DFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
++.|+||++...++++++|||. ||..|+.+|+.. ...||.|++++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 5789999999999999999999 999999999995 889999999875
No 46
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.59 E-value=5.3e-06 Score=100.24 Aligned_cols=228 Identities=13% Similarity=0.059 Sum_probs=138.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
..++.|+..|.+.++.+|..|+..|..+. ..+++|.|+..|++++..++..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence 45788899999999999999998887653 2457899999999999999999999987763211
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh-------------HH----HHhhcCCCcHHHHHHHhccCCHHH
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE-------------YR----KLIGENPEAIPALVDMVRDGTDRS 521 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-------------~~----~~i~~~~g~i~~Lv~lL~~~~~~~ 521 (685)
...+.+...|.+. ++.+|..|+.+|..+...+. .| ..++. .+..+.|..++.++++.+
T Consensus 684 ---~~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~-~~~~~~l~~~l~D~~~~V 758 (897)
T PRK13800 684 ---PPAPALRDHLGSP-DPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVS-VDDVESVAGAATDENREV 758 (897)
T ss_pred ---CchHHHHHHhcCC-CHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhc-ccCcHHHHHHhcCCCHHH
Confidence 1234555666665 66777777666655421100 00 00000 111233344444444444
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCC
Q 039015 522 KKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCT 601 (685)
Q Consensus 522 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~ 601 (685)
+..++.+|..+... +.++++.|+.++ .++++.++..|+..|..+...+ ..++.++..+.+.
T Consensus 759 R~~aa~aL~~~~~~--------~~~~~~~L~~ll-~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~- 819 (897)
T PRK13800 759 RIAVAKGLATLGAG--------GAPAGDAVRALT-GDPDPLVRAAALAALAELGCPP---------DDVAAATAALRAS- 819 (897)
T ss_pred HHHHHHHHHHhccc--------cchhHHHHHHHh-cCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCC-
Confidence 44444444443221 112245566666 4555666666666665552210 0123455566655
Q ss_pred ChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015 602 SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660 (685)
Q Consensus 602 s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l 660 (685)
++.++..|+.+|..+.. ...++.|..++.+.+..++..|...|..+
T Consensus 820 d~~VR~~Aa~aL~~l~~-------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 820 AWQVRQGAARALAGAAA-------------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred ChHHHHHHHHHHHhccc-------------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 66677777777655432 12357889999999999999988888775
No 47
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.58 E-value=2.4e-08 Score=98.38 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=60.9
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHh
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVD 346 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~ 346 (685)
.+..-++|-||..+++-|+.++||||||.-||..++.. ++.||.|+......-+.-+..++..++.+...
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHARN 90 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence 45556899999999999999999999999999999998 88999999998877778888888887776443
No 48
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5.3e-06 Score=93.33 Aligned_cols=258 Identities=18% Similarity=0.152 Sum_probs=189.7
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHH-HhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhcccc-Ccchh
Q 039015 380 LANFISDRLLEG-TSEEKNKVAYEVRL-LTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSK-HCKSK 455 (685)
Q Consensus 380 ~i~~Lv~~L~s~-~~~~~~~a~~~L~~-La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~-~~~~k 455 (685)
.+..|++.|... ++-.|.+|+.+|.. |+-.+++.-..|--.-.+|.|+.+|+. .+.+++..|+++|.+|.. .+...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 478888888654 88889999988865 454444444444445679999999988 679999999999999985 56678
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM- 534 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~- 534 (685)
..+++.++||.+++-|..=...++.+.+..+|-.+|.... ..|.+ .|++-..+..|.--+..++..|+..-.|.|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~-AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQ-AGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888999999999988765578999999999999987443 34445 8899999988876677888899999999995
Q ss_pred -CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc----ChhcHHHHHhcCChHHHHHHhhcCC---ChhHH
Q 039015 535 -HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE----KLDGTIAILHHGALDMIMKILDSCT---SRAGK 606 (685)
Q Consensus 535 -~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~----~~~~~~~i~~~g~v~~Lv~lL~~~~---s~~~~ 606 (685)
..+.-..+++ ++|.|..+| +..+....+.++-+++.++. .++--+++...|-|.-..+++...+ +-...
T Consensus 325 i~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 325 IRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred CCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 3444455555 499999999 66777788888888888865 3555567888887887877776531 11122
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC
Q 039015 607 EYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG 645 (685)
Q Consensus 607 e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g 645 (685)
---+..|..+|.+++ -....+.+ .++...|..++..-
T Consensus 402 ~~vIrmls~msS~~p-l~~~tl~k-~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSP-LLFRTLLK-LDIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHHHHccCCh-HHHHHHHH-hhHHHHHHHHHhcc
Confidence 234455555565543 44445555 67788888887543
No 49
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.55 E-value=5.1e-08 Score=97.19 Aligned_cols=48 Identities=23% Similarity=0.437 Sum_probs=41.1
Q ss_pred CCCccCcCccccCCCc--------eeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 278 PDDFTCPISLEIMKDP--------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dP--------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
.++..||||++.+.++ +..+|||.||+.||.+|+.. +.+||.||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4568999999987764 45689999999999999986 789999999875
No 50
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.54 E-value=6.2e-07 Score=79.86 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=114.5
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 379 LLANFISDRL-LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 379 ~~i~~Lv~~L-~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
..+..||... ...+.+.+.+.+..|.+++. ++.|...+.+..++...+.-|..+|..+.+.++..|+|++.+..|++.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3467777766 45688999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHH
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDM 513 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~l 513 (685)
|.++++++.++.++.+. ...+...|+.+|..|+... ..+..+.. +.++..+-+.
T Consensus 95 I~ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell~-p~Vv~~v~r~ 149 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELLS-PAVVRTVQRW 149 (173)
T ss_pred HHHhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhcc-HHHHHHHHHH
Confidence 99999999999999998 8888889999999998766 66777766 4444444443
No 51
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.54 E-value=3.6e-08 Score=72.25 Aligned_cols=40 Identities=38% Similarity=0.870 Sum_probs=34.2
Q ss_pred cCcCccccCC---CceeccCcccccHHHHHHHHHcCCCCCCCCC
Q 039015 282 TCPISLEIMK---DPVTLSTGHTYDRASILKWFRAGNSTCPKTG 322 (685)
Q Consensus 282 ~CpIc~~~m~---dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~ 322 (685)
.|+||++.+. .++.++|||.|+..||.+|+.. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999994 4566799999999999999998 67999995
No 52
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=5.6e-08 Score=90.02 Aligned_cols=55 Identities=22% Similarity=0.571 Sum_probs=46.0
Q ss_pred CCCCCccCcCccccCCC--ceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCc
Q 039015 276 LTPDDFTCPISLEIMKD--PVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELL 331 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~d--Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~ 331 (685)
....-|.||||++-+.. ||.+.|||.||+.||+..++. ...||.|++.+++..+.
T Consensus 127 ~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFH 183 (187)
T ss_pred ccccccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhe
Confidence 34455999999999886 455789999999999999998 67899999988876554
No 53
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.53 E-value=1.2e-05 Score=97.17 Aligned_cols=228 Identities=17% Similarity=0.109 Sum_probs=152.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc------
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC------ 452 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~------ 452 (685)
..++.|+..|+..+..+|..|+..|..+....+ ..+.|...|.++|+.++..|+.+|..+...+
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~ 721 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAA 721 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHH
Confidence 457888999999999999999999887753111 1245556666666666666666665543111
Q ss_pred -----ch--hHHHH----hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHH
Q 039015 453 -----KS--KSMVV----ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRS 521 (685)
Q Consensus 453 -----~~--k~~i~----~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 521 (685)
+. |...+ ..+..+.|...+... +.++|..++.+|..+... ..+.++.|..+++++++.+
T Consensus 722 ~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~-~~~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~d~~V 791 (897)
T PRK13800 722 ALGDPDHRVRIEAVRALVSVDDVESVAGAATDE-NREVRIAVAKGLATLGAG---------GAPAGDAVRALTGDPDPLV 791 (897)
T ss_pred HhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCC-CHHHHHHHHHHHHHhccc---------cchhHHHHHHHhcCCCHHH
Confidence 00 00000 112223444455555 555666555555554321 1335789999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCC
Q 039015 522 KKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCT 601 (685)
Q Consensus 522 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~ 601 (685)
+..|+.+|.++... ..+++.|+..| .+++..++..|+.+|..+.. ...++.|+.+|++.
T Consensus 792 R~aA~~aLg~~g~~---------~~~~~~l~~aL-~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~- 850 (897)
T PRK13800 792 RAAALAALAELGCP---------PDDVAAATAAL-RASAWQVRQGAARALAGAAA----------DVAVPALVEALTDP- 850 (897)
T ss_pred HHHHHHHHHhcCCc---------chhHHHHHHHh-cCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCC-
Confidence 99999999887322 11235678888 67788899999999987642 23468899999987
Q ss_pred ChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 039015 602 SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRI 659 (685)
Q Consensus 602 s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~ 659 (685)
++.++..|+.+|..+- .++. ..+.|...+.+.+..+++.|...|..
T Consensus 851 ~~~VR~~A~~aL~~~~--~~~~----------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 851 HLDVRKAAVLALTRWP--GDPA----------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred CHHHHHHHHHHHhccC--CCHH----------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999999998862 1122 24467788889999999999888763
No 54
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.49 E-value=2.2e-05 Score=82.57 Aligned_cols=271 Identities=14% Similarity=0.117 Sum_probs=183.3
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHH-------HHHHHHHHhhccccC
Q 039015 381 ANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSS-------TQENAIAALLNLSKH 451 (685)
Q Consensus 381 i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~-------~~~~A~~aL~nLs~~ 451 (685)
...+++.|.+ -.++...-.+..+...+. ++..+-.+++.|.+..++.++.. ++.. .-..+.....-|...
T Consensus 225 ~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG 303 (604)
T KOG4500|consen 225 VFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG 303 (604)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC
Confidence 4445566643 344555555666777775 77889999999999999998876 3322 222333333344455
Q ss_pred cchhHHHHh-cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc-----cCCHHHHHHH
Q 039015 452 CKSKSMVVE-SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR-----DGTDRSKKNA 525 (685)
Q Consensus 452 ~~~k~~i~~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-----~~~~~~~~~A 525 (685)
++.-..+.+ ...+..++.-+.+. +......++-++.|++..++++..+.+ .|.+..|+++|- +|+.+.+-.+
T Consensus 304 DeSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~ 381 (604)
T KOG4500|consen 304 DESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHAC 381 (604)
T ss_pred chHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHH
Confidence 555444444 44899999999988 889999999999999999999999999 999999999884 3567778899
Q ss_pred HHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh-cHHHHHhcCC-hHHHHHHhhcCCCh
Q 039015 526 LVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD-GTIAILHHGA-LDMIMKILDSCTSR 603 (685)
Q Consensus 526 ~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~-~~~~i~~~g~-v~~Lv~lL~~~~s~ 603 (685)
+.||.||..--.|+..++.+|+++.++..+ ....+.++-.-++.|..+--..+ ...++..+.. +..|++--+++ +.
T Consensus 382 lsALRnl~IPv~nka~~~~aGvteaIL~~l-k~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~-D~ 459 (604)
T KOG4500|consen 382 LSALRNLMIPVSNKAHFAPAGVTEAILLQL-KLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSP-DF 459 (604)
T ss_pred HHHHHhccccCCchhhccccchHHHHHHHH-HhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCC-cc
Confidence 999999999999999999999999999999 45567777777777777654433 3334443322 33344333332 22
Q ss_pred h-HHHHHHHHHHHHhccCc-HHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHH
Q 039015 604 A-GKEYCVSLLLALCINGG-ANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALI 657 (685)
Q Consensus 604 ~-~~e~a~~~L~~L~~~~~-~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL 657 (685)
. +....-..|..+..++- .++...+-+ .|++..++.......-..+..|.-.|
T Consensus 460 aGv~gESnRll~~lIkHs~~kdv~~tvpk-sg~ik~~Vsm~t~~hi~mqnEalVal 514 (604)
T KOG4500|consen 460 AGVAGESNRLLLGLIKHSKYKDVILTVPK-SGGIKEKVSMFTKNHINMQNEALVAL 514 (604)
T ss_pred chhhhhhhHHHHHHHHhhHhhhhHhhccc-cccHHHHHHHHHHhhHHHhHHHHHHH
Confidence 2 34455666666666632 234444444 66777777776665544444443333
No 55
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.3e-06 Score=83.62 Aligned_cols=76 Identities=33% Similarity=0.433 Sum_probs=71.1
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCccc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSI 351 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~~~ 351 (685)
++|+.++|.|++++|++||+.++|-||+|.-|..++..-...-|.++.+++...++||..|+..|..|.+.|.+..
T Consensus 207 Evpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~ 282 (284)
T KOG4642|consen 207 EVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWAD 282 (284)
T ss_pred cccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccccc
Confidence 7899999999999999999999999999999999998756679999999999999999999999999999998753
No 56
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.44 E-value=1.8e-07 Score=68.31 Aligned_cols=43 Identities=42% Similarity=0.901 Sum_probs=38.7
Q ss_pred cCcCccccCCCceecc-CcccccHHHHHHHHHcCCCCCCCCCcc
Q 039015 282 TCPISLEIMKDPVTLS-TGHTYDRASILKWFRAGNSTCPKTGER 324 (685)
Q Consensus 282 ~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~~~~~CP~c~~~ 324 (685)
.|+||.+.+.+|+.+. |||.||..|+..|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888775 999999999999999877889999875
No 57
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.1e-05 Score=84.02 Aligned_cols=185 Identities=20% Similarity=0.239 Sum_probs=150.8
Q ss_pred CCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHH
Q 039015 432 SKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPAL 510 (685)
Q Consensus 432 s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~L 510 (685)
+.+.+-++.|+.-|..+..+-+|...+...|++.+++..++++ +.++|..|+++|...+.++ ...+.+.+ .|+.+.|
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIE-LGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHH-cccHHHH
Confidence 4678889999999999999999999999999999999999999 9999999999999998766 67778887 8999999
Q ss_pred HHHhccCC-HHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcChhcHHHHHhc
Q 039015 511 VDMVRDGT-DRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSS-DSEELITDSLAVLATLAEKLDGTIAILHH 587 (685)
Q Consensus 511 v~lL~~~~-~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~La~~~~~~~~i~~~ 587 (685)
+..+...+ ..++..|+.|+.+|-.+. .....+...++...|..+|.+. .+..++..++..+..|.........+...
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 99997654 566789999999999765 5888899999999999999543 56788899999999997754333334443
Q ss_pred CC-hHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015 588 GA-LDMIMKILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 588 g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
-+ ...++.+.... ...+.+.++.++..+...
T Consensus 252 ~~f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 252 LGFQRVLENLISSL-DFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhhHHHHHHhhcc-chhhhHHHHHHHHHHHHH
Confidence 34 44444466666 778899988888776653
No 58
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.39 E-value=1.5e-05 Score=91.00 Aligned_cols=101 Identities=17% Similarity=0.150 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
..+..+.+.|.+.++..+..|++.|.+++ +++.... .+|.+..+|.++++.++..|+.++..+....++ .+
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~ 149 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LV 149 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HH
Confidence 34555666666666666666666666655 2222111 255566666666666666666666665543221 11
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYI 490 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L 490 (685)
-.. .++.+..+|... ++.++..|+.++..+
T Consensus 150 ~~~-~~~~l~~lL~d~-~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 150 EDE-LIPKLKQLLSDK-DPSVVSAALSLLSEI 179 (526)
T ss_dssp HGG-HHHHHHHHTTHS-SHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHhhhccCC-cchhHHHHHHHHHHH
Confidence 112 456666666555 566666666666666
No 59
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.36 E-value=1.6e-07 Score=72.31 Aligned_cols=44 Identities=36% Similarity=0.887 Sum_probs=31.7
Q ss_pred CCccCcCccccCCCceec-cCcccccHHHHHHHHH-cCCCCCCCCC
Q 039015 279 DDFTCPISLEIMKDPVTL-STGHTYDRASILKWFR-AGNSTCPKTG 322 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~-~~~~~CP~c~ 322 (685)
..+.|||++..|.+||.. .|||+|++.+|..|+. .+...||..+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 359999999999999986 8999999999999994 3467899844
No 60
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.35 E-value=4e-07 Score=64.10 Aligned_cols=39 Identities=56% Similarity=1.126 Sum_probs=36.2
Q ss_pred CcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCC
Q 039015 283 CPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKT 321 (685)
Q Consensus 283 CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c 321 (685)
|+||++...++++++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999999667789986
No 61
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.6e-07 Score=97.86 Aligned_cols=71 Identities=27% Similarity=0.537 Sum_probs=61.3
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV 349 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 349 (685)
...+++.||||++++.+|++++|||+||+.|+..++. +...||.|+. ... .+.+|..+.+++..+...+..
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~ 79 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLS 79 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCCc
Confidence 4567899999999999999999999999999999998 6789999996 332 777999999999888766543
No 62
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.34 E-value=8.1e-05 Score=81.02 Aligned_cols=217 Identities=14% Similarity=0.135 Sum_probs=161.0
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-----CCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc
Q 039015 380 LANFISDRLL-EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-----GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK 453 (685)
Q Consensus 380 ~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-----G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~ 453 (685)
.+..++..|+ .+.++...-.+..+..+...++..-..|.+. ....+++.+|..+|.-++..|..+|..|.....
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~ 133 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL 133 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc
Confidence 4566667664 4566777778888888887665555556654 467777889988999999999999988865432
Q ss_pred hh-HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccC--CHHHHHHHHHHHH
Q 039015 454 SK-SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDG--TDRSKKNALVAIF 530 (685)
Q Consensus 454 ~k-~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~ 530 (685)
.+ ......-...-+...|+++.+...+..|+..|..|...+++|..+.+ .++++.|+.+|+.. +.+..-.++-++|
T Consensus 134 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~-~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 134 AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL-ADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH-ccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 21 11111113345556666654578888899999999999999999988 67899999999763 3577779999999
Q ss_pred HhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCh-------hcHHHHHhcCChHHHHHHhh
Q 039015 531 GLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL-------DGTIAILHHGALDMIMKILD 598 (685)
Q Consensus 531 nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~-------~~~~~i~~~g~v~~Lv~lL~ 598 (685)
-|+.+++....+...|.|+.|+++++....+.+..-++++|.||...+ .....+++.| ++.++..|.
T Consensus 213 lLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~-l~~~l~~L~ 286 (429)
T cd00256 213 LLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK-VLKTLQSLE 286 (429)
T ss_pred HHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC-hHHHHHHHh
Confidence 999998877777888999999999977778889999999999998843 1223445544 455556444
No 63
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00015 Score=73.58 Aligned_cols=275 Identities=14% Similarity=0.075 Sum_probs=191.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHh-hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVE-VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV 459 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 459 (685)
...++..|.+.++.++..|+.-+-.+..+ ..+.+... .-.++.+.+++...++ .+.|+++|.|+|.++.-++.++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 45678889999999999999888877753 44444443 3578889999987666 7889999999999999888888
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc-C----CCcHHHHHHH-hccC-CH-HHHHHHHHHHHH
Q 039015 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE-N----PEAIPALVDM-VRDG-TD-RSKKNALVAIFG 531 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~----~g~i~~Lv~l-L~~~-~~-~~~~~A~~aL~n 531 (685)
.. .+..++..+-+. ....-...+.+|.||+..++....+.. - ..++.-|+.- ...+ +. .--..-+..+.|
T Consensus 81 ~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 77 888888888877 566677889999999998865554432 1 1334444443 3322 21 223466778899
Q ss_pred hcCCCCcHHHHHhcCChHHHHHHhccCCChh-HHHHHHHHHHHHhcChhcHHHHHhcCC--hHHHHH-H-----------
Q 039015 532 LLMHSGNHWRFLAAGAVPLLLNLLTSSDSEE-LITDSLAVLATLAEKLDGTIAILHHGA--LDMIMK-I----------- 596 (685)
Q Consensus 532 Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~-~~~~al~~L~~La~~~~~~~~i~~~g~--v~~Lv~-l----------- 596 (685)
|+.....|..+.+...++.=.-+-....+.. -+...+++|.|++.+......++..+. +|.|+. +
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 9999988888887764433222211232222 335578899999888777777766332 333332 1
Q ss_pred ---------hhc----CCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHHH
Q 039015 597 ---------LDS----CTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSRASKKASALIRILHE 662 (685)
Q Consensus 597 ---------L~~----~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~k~~A~~lL~~l~~ 662 (685)
+-. .++|.++..-+.+|..||.. ...++.+.. .|+.+.|.++=... ++.+++++..+.+++.+
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~-kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRS-KGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHh-cCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 210 12678888999999999987 566777776 78888777776554 56788889999998887
Q ss_pred hh
Q 039015 663 FY 664 (685)
Q Consensus 663 ~~ 664 (685)
-.
T Consensus 316 ~e 317 (353)
T KOG2973|consen 316 LE 317 (353)
T ss_pred cc
Confidence 43
No 64
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.31 E-value=2.2e-05 Score=83.07 Aligned_cols=260 Identities=17% Similarity=0.145 Sum_probs=185.4
Q ss_pred HHHHHHHHHhcCCCHHH--HHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcch-
Q 039015 379 LLANFISDRLLEGTSEE--KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKS- 454 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~--~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~- 454 (685)
+.+..|++++.+.+.+. +.+|.+.|..+. ..+||..++..| ...++.+-+. +.++.+...+.+|.++.++.+.
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet 256 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEET 256 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH
Confidence 45788899998887765 888998888876 458999999887 5555554433 5678899999999999998754
Q ss_pred hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015 455 KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGL 532 (685)
Q Consensus 455 k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 532 (685)
...+++.|++..++--.++. ++....+++-+|.|.+.+. +.+..|.+ ..+-+-|+.+-.+.++-.+-.|+-|...|
T Consensus 257 ~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence 88899999999999999988 8999999999999987654 77888887 77788888887777777888999999999
Q ss_pred cCCCCcHHHHHhcCC---hHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhc-CChHHHHHHhhcCCChhHHHH
Q 039015 533 LMHSGNHWRFLAAGA---VPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHH-GALDMIMKILDSCTSRAGKEY 608 (685)
Q Consensus 533 s~~~~n~~~iv~~G~---v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~-g~v~~Lv~lL~~~~s~~~~e~ 608 (685)
+.+.+.-..+.++|- |++|+..+ ++.. .|.+ ....+-... +.++.|+.+|.+. +....
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~----DP~~----------FARD-~hd~aQG~~~d~LqRLvPlLdS~---R~EAq 396 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASL----DPGR----------FARD-AHDYAQGRGPDDLQRLVPLLDSN---RLEAQ 396 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhcc----Ccch----------hhhh-hhhhhccCChHHHHHhhhhhhcc---hhhhh
Confidence 999988777777774 55555555 2211 1110 000000011 1267788888743 33344
Q ss_pred HHHHHHHHhcc---CcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015 609 CVSLLLALCIN---GGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE 662 (685)
Q Consensus 609 a~~~L~~L~~~---~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 662 (685)
++++....+.. ..+.-..+.. +-|+++.|.++.++.+..+..-|...|.++.+
T Consensus 397 ~i~AF~l~~EAaIKs~Q~K~kVFs-eIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 397 CIGAFYLCAEAAIKSLQGKTKVFS-EIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred hhHHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 45544322211 1011122233 36889999999998888888889999999876
No 65
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.28 E-value=6.2e-06 Score=73.60 Aligned_cols=124 Identities=18% Similarity=0.155 Sum_probs=108.9
Q ss_pred cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHH
Q 039015 461 SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHW 540 (685)
Q Consensus 461 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 540 (685)
.+.+..||.-.+...+.++++...+-|.|.+.++-|-..+.+ ..+++..|+-|...+...+.-++..|+|||.+..|..
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 466788888888776899999999999999999988888887 8999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCh-hcHHHHHh
Q 039015 541 RFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL-DGTIAILH 586 (685)
Q Consensus 541 ~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~-~~~~~i~~ 586 (685)
-+++++++|..+..+ +++.+.....|+..|..|+... ..+..+..
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 999999999999999 7888888888888898887643 34455554
No 66
>PHA02926 zinc finger-like protein; Provisional
Probab=98.27 E-value=5.6e-07 Score=86.55 Aligned_cols=51 Identities=22% Similarity=0.420 Sum_probs=41.0
Q ss_pred CCCCCccCcCccccCCC---------ceeccCcccccHHHHHHHHHcC-----CCCCCCCCcccc
Q 039015 276 LTPDDFTCPISLEIMKD---------PVTLSTGHTYDRASILKWFRAG-----NSTCPKTGERLQ 326 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~d---------Pv~~~cghtfcr~ci~~~~~~~-----~~~CP~c~~~l~ 326 (685)
...++..|+||++...+ ++..+|+|+||..||.+|.... ...||.||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34567999999988644 3556899999999999999752 356999999875
No 67
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.9e-07 Score=95.31 Aligned_cols=71 Identities=25% Similarity=0.441 Sum_probs=62.1
Q ss_pred CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccC-CCCcccHHHHhhHHHHHHh
Q 039015 276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQS-KELLVNLVLKRIIQDWSVD 346 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~-~~l~~n~~l~~~i~~~~~~ 346 (685)
.+..++.||||+.+++.-+++ .|+|.||..||.+-+..|+..||.|++.+.. ..|.++.....+|.+....
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYPS 111 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhcc
Confidence 567789999999999999988 5999999999999999999999999999854 4788888888888776444
No 68
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00028 Score=82.89 Aligned_cols=277 Identities=16% Similarity=0.199 Sum_probs=173.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHHhhc----CCCHHHHHHHHHHhhccccCcch-
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLKLLS----SKDSSTQENAIAALLNLSKHCKS- 454 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~lL~----s~~~~~~~~A~~aL~nLs~~~~~- 454 (685)
.+.+.+-+..++..+|..|++++..++...+.+....... ..+|.++..|. .+|.+....++.+|-.|.....-
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 3444455555555599999999999887665555554443 56777776554 35666667777777777654422
Q ss_pred -hHHHHhcCcHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCchhHHHH----hh---------------------------
Q 039015 455 -KSMVVESGGLDFIVDMVKKG-LKVEARQHAAATLFYIASIEEYRKL----IG--------------------------- 501 (685)
Q Consensus 455 -k~~i~~~g~i~~Lv~lL~~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~----i~--------------------------- 501 (685)
+..+ ...|.....+.++. .+..+|..|...|..++.......+ ++
T Consensus 241 l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d 318 (1075)
T KOG2171|consen 241 LRPHL--SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD 318 (1075)
T ss_pred HHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence 2222 22344444444432 2456666666666666554210000 00
Q ss_pred -------------------cCCC---c----HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHh--cCChHHHHH
Q 039015 502 -------------------ENPE---A----IPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLA--AGAVPLLLN 553 (685)
Q Consensus 502 -------------------~~~g---~----i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~--~G~v~~Lv~ 553 (685)
..-| . ++.+-.+|++.+..-+..|+.||..++.... ..|.. ..+++..++
T Consensus 319 ed~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~--~~m~~~l~~Il~~Vl~ 396 (1075)
T KOG2171|consen 319 EDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCS--DVMIGNLPKILPIVLN 396 (1075)
T ss_pred cccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHh
Confidence 0111 2 3333344556666777777777766643322 11211 235666777
Q ss_pred HhccCCChhHHHHHHHHHHHHhcC--hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhc
Q 039015 554 LLTSSDSEELITDSLAVLATLAEK--LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKS 631 (685)
Q Consensus 554 lL~~~~~~~~~~~al~~L~~La~~--~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~ 631 (685)
.| .|+++.++-.|+.++..++.+ ++.... ...-.++.|+..+.+..+++++.+|+++|.++....+.....-..
T Consensus 397 ~l-~DphprVr~AA~naigQ~stdl~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-- 472 (1075)
T KOG2171|consen 397 GL-NDPHPRVRYAALNAIGQMSTDLQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-- 472 (1075)
T ss_pred hc-CCCCHHHHHHHHHHHHhhhhhhcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--
Confidence 77 789999999999999999986 332222 222346788887776558999999999999999887666665555
Q ss_pred CCcHH-HHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015 632 PSLMG-SLYSLLSQGSSRASKKASALIRILHEFYE 665 (685)
Q Consensus 632 ~g~i~-~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~ 665 (685)
.+++. .|..|.+++++.+++.+.+.+.-.....+
T Consensus 473 d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 473 DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 46677 78888899999999998888776655433
No 69
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.24 E-value=9e-05 Score=84.57 Aligned_cols=254 Identities=19% Similarity=0.163 Sum_probs=157.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
...++.+.+.+.++++.+|.+|+-++..+.+.+++ .+... .++.+..+|.+.|+.++..|+.++..+ ..++.-..
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~ 187 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK 187 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh
Confidence 44577788888999999999999999999876544 23333 689999999999999999999999999 11111100
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 537 (685)
-.-...+..|..++... ++-.+...+.+|..++........- ...++.+..++++.++.+.-.|+.++..+.....
T Consensus 188 ~~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~ 263 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE 263 (526)
T ss_dssp THHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH
T ss_pred hhHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH
Confidence 11133344555555555 7777888888888776644322210 2356777777777667777777777777655444
Q ss_pred cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhh-cCCChhHHHHHHHHHHHH
Q 039015 538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILD-SCTSRAGKEYCVSLLLAL 616 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~-~~~s~~~~e~a~~~L~~L 616 (685)
.-..+++.|+.+| .+++..++-.++..|..++... ...+ . .....+..+. +. +..++..++.+|..+
T Consensus 264 -----~~~~~~~~L~~lL-~s~~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 264 -----LLQKAINPLIKLL-SSSDPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLYDD-DPSIRKKALDLLYKL 331 (526)
T ss_dssp -----HHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHCSS-SHHHHHHHHHHHHHH
T ss_pred -----HHHhhHHHHHHHh-hcccchhehhHHHHHHHhhccc--chhh-h--hhhhhhheecCCC-ChhHHHHHHHHHhhc
Confidence 3344677788888 4666777777888777777643 2222 2 2222333444 44 777777888888777
Q ss_pred hccCcHHHHHHHHhcCCcHHHHHHHHh-cCChHHHHHHHHHHHHHH
Q 039015 617 CINGGANVVALLVKSPSLMGSLYSLLS-QGSSRASKKASALIRILH 661 (685)
Q Consensus 617 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~-~g~~~~k~~A~~lL~~l~ 661 (685)
+.. ..+... ++-|...+. .++...++.+...+..+.
T Consensus 332 ~~~--~n~~~I-------l~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 332 ANE--SNVKEI-------LDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp --H--HHHHHH-------HHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred ccc--cchhhH-------HHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 765 333332 224445553 335545554444444333
No 70
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.6e-05 Score=89.81 Aligned_cols=57 Identities=16% Similarity=0.348 Sum_probs=51.2
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV 332 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~ 332 (685)
....-++||.|..-.+|-|++.|||.||..||++.+....+.||.|+..+...++.+
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 445669999999999999999999999999999999988999999999998777654
No 71
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.4e-07 Score=95.62 Aligned_cols=72 Identities=29% Similarity=0.485 Sum_probs=58.1
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHHHc----CCCCCCCCCccccCCCCccc----HHHHhhHHHHHHhcCc
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA----GNSTCPKTGERLQSKELLVN----LVLKRIIQDWSVDNGV 349 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~----~~~~CP~c~~~l~~~~l~~n----~~l~~~i~~~~~~~~~ 349 (685)
..+..||||++...-|+.+.|||.||..||..+|.. +...||+|+..+...++.|- ..-+.-+..++..||.
T Consensus 184 ~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~ 263 (513)
T KOG2164|consen 184 STDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGI 263 (513)
T ss_pred CcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCC
Confidence 338999999999999999999999999999999985 46689999999987666553 2333446777777773
No 72
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.20 E-value=1.7e-06 Score=88.72 Aligned_cols=62 Identities=23% Similarity=0.465 Sum_probs=46.5
Q ss_pred CCccCcCcccc-CCCce----eccCcccccHHHHHHHHHcCCCCCCCCCccccCCC----CcccHHHHhhH
Q 039015 279 DDFTCPISLEI-MKDPV----TLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKE----LLVNLVLKRII 340 (685)
Q Consensus 279 ~~~~CpIc~~~-m~dPv----~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~----l~~n~~l~~~i 340 (685)
++..||+|..- +..|- +.+|||+||.+|+...|..|...||.|+..+.... +.++..+..-|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV 72 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV 72 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence 45789999972 33442 22799999999999999888889999999988766 44455544444
No 73
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.19 E-value=8.5e-07 Score=90.24 Aligned_cols=66 Identities=18% Similarity=0.359 Sum_probs=56.7
Q ss_pred CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCC----CCcccHHHHhhHHH
Q 039015 276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSK----ELLVNLVLKRIIQD 342 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~----~l~~n~~l~~~i~~ 342 (685)
++.....|++|..+|.|+.++ .|-||||++||.+++.. ..+||.|...+-.. .+.++..|+.++..
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 567789999999999999987 69999999999999998 89999999877544 46778888877743
No 74
>PF05536 Neurochondrin: Neurochondrin
Probab=98.17 E-value=6.6e-05 Score=85.18 Aligned_cols=197 Identities=23% Similarity=0.272 Sum_probs=141.8
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh----HHHHhhcCCCcHHHHHHHhccCC-------HHHHHHHHHHHHH
Q 039015 463 GLDFIVDMVKKGLKVEARQHAAATLFYIASIEE----YRKLIGENPEAIPALVDMVRDGT-------DRSKKNALVAIFG 531 (685)
Q Consensus 463 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~lL~~~~-------~~~~~~A~~aL~n 531 (685)
.++..+.+|+.. +++.|-.+...+.++...++ .+..|.+ .=+.+.|-+||+.+. ...+.-|+..|..
T Consensus 6 ~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 6 SLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 467778899988 77888888888889887654 2445666 444799999998732 4567788999999
Q ss_pred hcCCCCc--HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHH
Q 039015 532 LLMHSGN--HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYC 609 (685)
Q Consensus 532 Ls~~~~n--~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a 609 (685)
+|..++. ...++.. ||.|++.+...++..+...|+.+|..++.+++|+.++++.|+++.|.+++.+ ++...+.|
T Consensus 84 f~~~~~~a~~~~~~~~--IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A 159 (543)
T PF05536_consen 84 FCRDPELASSPQMVSR--IPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN--QSFQMEIA 159 (543)
T ss_pred HcCChhhhcCHHHHHH--HHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence 9997764 4556654 9999999954444499999999999999999999999999999999998876 67889999
Q ss_pred HHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhccc
Q 039015 610 VSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERH 667 (685)
Q Consensus 610 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~ 667 (685)
+.+|.+++...+.+.... ...+....+..+.........+.+-.++..|..+-.+.
T Consensus 160 l~lL~~Lls~~~~~~~~~--~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAE--DSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHhcchhhhhh--hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 999999998765332221 11122222333333333333344555666666665444
No 75
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.17 E-value=1.4e-06 Score=63.69 Aligned_cols=41 Identities=24% Similarity=0.446 Sum_probs=35.2
Q ss_pred cCcCccccC---CCceeccCcccccHHHHHHHHHcCCCCCCCCCc
Q 039015 282 TCPISLEIM---KDPVTLSTGHTYDRASILKWFRAGNSTCPKTGE 323 (685)
Q Consensus 282 ~CpIc~~~m---~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~ 323 (685)
.|++|.+.+ ..|++++|||+||..|+.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999998 357788999999999999998 44779999974
No 76
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=4.1e-05 Score=86.41 Aligned_cols=147 Identities=19% Similarity=0.220 Sum_probs=122.1
Q ss_pred CCcHHHHHHHhccC-CHHHHHHHHHHHHHhcC-CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcH
Q 039015 504 PEAIPALVDMVRDG-TDRSKKNALVAIFGLLM-HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGT 581 (685)
Q Consensus 504 ~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~ 581 (685)
...+|.|+.+|+.. +.+....|+.||.+|+. .++....+|+.|+||.|+.-|..-...++.++++.+|..|+.. .-
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~ 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HP 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--cc
Confidence 56899999999875 58999999999999994 7889999999999999999886777899999999999999873 34
Q ss_pred HHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 039015 582 IAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASAL 656 (685)
Q Consensus 582 ~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~l 656 (685)
.+|+++|++...+..+.-= +-.++..|+++-.|.|..-..+....+.+ ++|.|..+++..+.+.-+.+.-.
T Consensus 288 ~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~e---alPlL~~lLs~~D~k~ies~~ic 358 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVME---ALPLLTPLLSYQDKKPIESVCIC 358 (1051)
T ss_pred HHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHHH---HHHHHHHHHhhccchhHHHHHHH
Confidence 6789999999998877765 77899999999999998665554555544 39999999999887765544433
No 77
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.2e-06 Score=86.46 Aligned_cols=54 Identities=22% Similarity=0.471 Sum_probs=46.9
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHH-HHHcCCCCCCCCCccccCCC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILK-WFRAGNSTCPKTGERLQSKE 329 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~-~~~~~~~~CP~c~~~l~~~~ 329 (685)
.+..++.|+||++.+.+|+.++|||.||..||.. |-......||.||+......
T Consensus 211 ip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 211 IPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 3477999999999999999999999999999999 87775667999998775543
No 78
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.02 E-value=0.00025 Score=78.59 Aligned_cols=201 Identities=14% Similarity=0.121 Sum_probs=143.8
Q ss_pred HhcCCCHHHHHHHHHHHHHHh---hcC-CchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hHHHHhc
Q 039015 387 RLLEGTSEEKNKVAYEVRLLT---KSS-IFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KSMVVES 461 (685)
Q Consensus 387 ~L~s~~~~~~~~a~~~L~~La---~~~-~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~ 461 (685)
.+..+.++.+.-++.....+. .+. ..+|..+-+.-....+..+.-..|......|+-.+.+++..-.. +.-....
T Consensus 339 sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~ 418 (678)
T KOG1293|consen 339 SLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRN 418 (678)
T ss_pred HHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 344555555554444432222 111 23445555544444444445557888888888888888866543 5555678
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHH
Q 039015 462 GGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHW 540 (685)
Q Consensus 462 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 540 (685)
.+..++|++|..+ ...+...+.++|.||.. ...+|..+.. .|+|+.|..++.+.+...++.++++|+++..+.++..
T Consensus 419 dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~ 496 (678)
T KOG1293|consen 419 DVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE 496 (678)
T ss_pred hhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence 8999999999888 88889999999999975 4488999988 9999999999999999999999999999998877544
Q ss_pred HH-HhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCC
Q 039015 541 RF-LAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGA 589 (685)
Q Consensus 541 ~i-v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~ 589 (685)
+. ..+.+-..++..+-++++.++++.|+.+|.||.- +.+..+-+++.-+
T Consensus 497 k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~ 547 (678)
T KOG1293|consen 497 KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK 547 (678)
T ss_pred HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence 43 3344444444444488999999999999999955 4555666666543
No 79
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0004 Score=79.81 Aligned_cols=259 Identities=19% Similarity=0.171 Sum_probs=179.7
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015 381 ANFISDRL-LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV 459 (685)
Q Consensus 381 i~~Lv~~L-~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 459 (685)
.+.+...| ..+++..+.-|+..+..+.. +.+.-..+++.|.+..|+.+|.+ -+..++.++..|..|+.+.+-...-+
T Consensus 1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred cHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34444455 34567788888888777664 55666678888999999999966 68889999999999999988766667
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhh--c---------------------------------
Q 039015 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIG--E--------------------------------- 502 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~--~--------------------------------- 502 (685)
+.|++.-|..++-...+...|..||..|..|..++ ..|..|- +
T Consensus 1851 ~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn 1930 (2235)
T KOG1789|consen 1851 EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWN 1930 (2235)
T ss_pred hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccC
Confidence 88998888888876646777888888887775443 1111110 0
Q ss_pred ----------------------------------------------------------------------CCCcHHHHHH
Q 039015 503 ----------------------------------------------------------------------NPEAIPALVD 512 (685)
Q Consensus 503 ----------------------------------------------------------------------~~g~i~~Lv~ 512 (685)
-.|.++.+..
T Consensus 1931 ~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~le 2010 (2235)
T KOG1789|consen 1931 EVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLE 2010 (2235)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHH
Confidence 0112223333
Q ss_pred HhccCCHHH--HHHHHHHHHHhcC-CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCC
Q 039015 513 MVRDGTDRS--KKNALVAIFGLLM-HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGA 589 (685)
Q Consensus 513 lL~~~~~~~--~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~ 589 (685)
++...++.. ..--..|+..|.. ++.-...+-.-|.+|.++..+ ...+..+-..|+.+|..|+.+.-..+++.+...
T Consensus 2011 lm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am-~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~ 2089 (2235)
T KOG1789|consen 2011 LMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM-CLQNTSAPRSAIRVLHELSENQFCCDAMAQLPC 2089 (2235)
T ss_pred HhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH-HhcCCcCcHHHHHHHHHHhhccHHHHHHhcccc
Confidence 333322211 1111123333333 444455566678999999887 333444557899999999999999999988888
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG 645 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g 645 (685)
+..++..|.. .+.....|+.+|-.+........+....+ .|++|.|+.|+...
T Consensus 2090 i~~~m~~mkK--~~~~~GLA~EalkR~~~r~~~eLVAQ~LK-~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2090 IDGIMKSMKK--QPSLMGLAAEALKRLMKRNTGELVAQMLK-CGLVPYLLQLLDSS 2142 (2235)
T ss_pred chhhHHHHHh--cchHHHHHHHHHHHHHHHhHHHHHHHHhc-cCcHHHHHHHhccc
Confidence 8888886664 45566689999999888776666777777 89999999999754
No 80
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.98 E-value=6.1e-06 Score=67.38 Aligned_cols=39 Identities=33% Similarity=0.722 Sum_probs=32.2
Q ss_pred CcCccccCCCc------------e-eccCcccccHHHHHHHHHcCCCCCCCCC
Q 039015 283 CPISLEIMKDP------------V-TLSTGHTYDRASILKWFRAGNSTCPKTG 322 (685)
Q Consensus 283 CpIc~~~m~dP------------v-~~~cghtfcr~ci~~~~~~~~~~CP~c~ 322 (685)
|+||++.+.+| + ..+|||.|...||.+|+.. +.+||.||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999999544 2 3379999999999999987 66999996
No 81
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.00099 Score=70.71 Aligned_cols=220 Identities=18% Similarity=0.213 Sum_probs=169.0
Q ss_pred HHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc------chh----HHHHhcCcHHHH
Q 039015 398 KVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC------KSK----SMVVESGGLDFI 467 (685)
Q Consensus 398 ~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~------~~k----~~i~~~g~i~~L 467 (685)
..+..+..+|. -|+--..+++.++++.|+.+|.+.|.++....+..|..|+..+ ++. ..+++.++++.|
T Consensus 103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 44556677774 7788888999999999999999999999999999999997543 222 234578999999
Q ss_pred HHHhcCC-----CCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccC-C-HHHHHHHHHHHHHhcCCCC-c
Q 039015 468 VDMVKKG-----LKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDG-T-DRSKKNALVAIFGLLMHSG-N 538 (685)
Q Consensus 468 v~lL~~~-----~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~-~-~~~~~~A~~aL~nLs~~~~-n 538 (685)
++-+.+= .......++.+++-||...+ +++..+.+ .|.+..|+.-+... . ...+..|...|.-+-.+.. |
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 9988743 01233456777777876544 77888888 68888888765543 2 4567788888888776554 8
Q ss_pred HHHHHhcCChHHHHHHhc----cC----CChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHH
Q 039015 539 HWRFLAAGAVPLLLNLLT----SS----DSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCV 610 (685)
Q Consensus 539 ~~~iv~~G~v~~Lv~lL~----~~----~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~ 610 (685)
+.....-.++..|++-+. .+ +..++.++....|+.+...+.++..++...|++...-+++. ....+..|+
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk~sr~Sal 338 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KKVSRGSAL 338 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HHHhhhhHH
Confidence 888888899999988774 12 24678899999999999999999999999999877767775 556778899
Q ss_pred HHHHHHhccCc
Q 039015 611 SLLLALCINGG 621 (685)
Q Consensus 611 ~~L~~L~~~~~ 621 (685)
.+|-....+.+
T Consensus 339 kvLd~am~g~~ 349 (536)
T KOG2734|consen 339 KVLDHAMFGPE 349 (536)
T ss_pred HHHHHHHhCCC
Confidence 99988776653
No 82
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.00025 Score=83.24 Aligned_cols=246 Identities=14% Similarity=0.165 Sum_probs=160.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc-hhHHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK-SKSMV 458 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~-~k~~i 458 (685)
..+.+-.+|.|.+...|..|+-+|..++.+..+.-... -...++..+..|.++++.+|-.|+.++..+|.+=. .-..-
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~-l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN-LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 45677778899999999999999999987543322221 12567778889999999999999999999997642 22333
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHH-HHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIP-ALVDMVRDGTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~-~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 537 (685)
...-.++.|+..+.+..++.++.+|+++|.|++..........=-++.+. .|..+++++++.+++.+++||...+...+
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 34556778999998776889999999999999876543222211123444 23335567889999999999998875544
Q ss_pred cHHHHHhcCChHHHHHHhccCCChhHHH---HHHHHHHHHhcChhcHHHHHhcC--ChHHHHHH---hhcCCChhHHHHH
Q 039015 538 NHWRFLAAGAVPLLLNLLTSSDSEELIT---DSLAVLATLAEKLDGTIAILHHG--ALDMIMKI---LDSCTSRAGKEYC 609 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~---~al~~L~~La~~~~~~~~i~~~g--~v~~Lv~l---L~~~~s~~~~e~a 609 (685)
..-.=.=.-.+|.|.+.|.+..+++.++ +...++..++. .-|++.+...- -++.+..+ .... ++..+++.
T Consensus 508 ~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~-AVGke~F~~~a~eliqll~~~~~~~~~~-dd~~~sy~ 585 (1075)
T KOG2171|consen 508 EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR-AVGKEKFLPLAEELIQLLLELQGSDQDD-DDPLRSYM 585 (1075)
T ss_pred hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH-HhhhhhhhHhHHHHHHHHHhhcccchhh-ccccHHHH
Confidence 3322222336788888886544344443 33333333332 34445543321 13333333 1112 56677888
Q ss_pred HHHHHHHhccCcHHHHHHH
Q 039015 610 VSLLLALCINGGANVVALL 628 (685)
Q Consensus 610 ~~~L~~L~~~~~~~~~~~l 628 (685)
.+...++|+--+++....+
T Consensus 586 ~~~warmc~ilg~~F~p~L 604 (1075)
T KOG2171|consen 586 IAFWARMCRILGDDFAPFL 604 (1075)
T ss_pred HHHHHHHHHHhchhhHhHH
Confidence 8888899986666655554
No 83
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=6.6e-05 Score=82.00 Aligned_cols=73 Identities=30% Similarity=0.408 Sum_probs=68.0
Q ss_pred CCCCCccCcCccccCCCceecc-CcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLS-TGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV 349 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 349 (685)
++|++|.-|+...+|+|||+++ +|-+.+|+-|..++-. ..+.|.-|.+++.++++||..|++.|..|.+..+.
T Consensus 850 DvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~ 923 (929)
T COG5113 850 DVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQ 923 (929)
T ss_pred CCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcccc
Confidence 8999999999999999999995 8899999999999887 77899999999999999999999999999877664
No 84
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0015 Score=66.60 Aligned_cols=236 Identities=17% Similarity=0.176 Sum_probs=163.7
Q ss_pred hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh
Q 039015 376 AMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 376 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
..+..++.+.+++....+ -..|+.+|-+++. +...|..+... .+..++..+..+........+..|.||+.+++.-
T Consensus 41 ~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~ 116 (353)
T KOG2973|consen 41 YSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEV 116 (353)
T ss_pred chhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHH
Confidence 344567878888765554 5568888999997 77788888887 8888888887777788889999999999998763
Q ss_pred HHH-H--h----cCcHHHHHHHhcCCCCHHH-HHHHHHHHHHhcCchhHHHHhhcCCCcHH--HHHHHhccCCHHH-HHH
Q 039015 456 SMV-V--E----SGGLDFIVDMVKKGLKVEA-RQHAAATLFYIASIEEYRKLIGENPEAIP--ALVDMVRDGTDRS-KKN 524 (685)
Q Consensus 456 ~~i-~--~----~g~i~~Lv~lL~~~~~~e~-~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~--~Lv~lL~~~~~~~-~~~ 524 (685)
..+ . . .|.++....+...+.+..+ -.+.|.++.+|+.....|..+.. ...++ .|+.+ .+.+..+ +..
T Consensus 117 ~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~-~k~~p~~kll~f-t~~~s~vRr~G 194 (353)
T KOG2973|consen 117 AALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLE-PKRFPDQKLLPF-TSEDSQVRRGG 194 (353)
T ss_pred HHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcc-hhhhhHhhhhcc-cccchhhhccc
Confidence 333 2 2 5667777777776634222 35677888899999999998877 54332 22222 2333344 446
Q ss_pred HHHHHHHhcCCCCcHHHHHhcCChHHHHHHhc----------------------------cCCChhHHHHHHHHHHHHhc
Q 039015 525 ALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT----------------------------SSDSEELITDSLAVLATLAE 576 (685)
Q Consensus 525 A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~----------------------------~~~~~~~~~~al~~L~~La~ 576 (685)
.+.+|.|.|.+..++..+++.+ +..|..+|. .++++.++..-+-+|..|+.
T Consensus 195 vagtlkN~cFd~~~h~~lL~e~-~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca 273 (353)
T KOG2973|consen 195 VAGTLKNCCFDAKLHEVLLDES-INLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA 273 (353)
T ss_pred hHHHHHhhhccchhHHHHhcch-HHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh
Confidence 7889999999999998888743 333333221 13568899999999999999
Q ss_pred ChhcHHHHHhcCChHHHHHHhhcC-CChhHHHHHHHHHHHHhcc
Q 039015 577 KLDGTIAILHHGALDMIMKILDSC-TSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 577 ~~~~~~~i~~~g~v~~Lv~lL~~~-~s~~~~e~a~~~L~~L~~~ 619 (685)
...||+.+...|+-|.+-+ ++.+ ..+...+.+-.+...|...
T Consensus 274 T~~GRe~lR~kgvYpilRE-lhk~e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 274 TRAGREVLRSKGVYPILRE-LHKWEEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred hhHhHHHHHhcCchHHHHH-HhcCCCcHHHHHHHHHHHHHHHhc
Confidence 9999999988766554444 4433 3566666655555555543
No 85
>PF05536 Neurochondrin: Neurochondrin
Probab=97.90 E-value=0.00057 Score=77.64 Aligned_cols=234 Identities=18% Similarity=0.117 Sum_probs=163.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCch---hhHHHhhCCHHHHHHhhcC-------CCHHHHHHHHHHhhccc
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFN---RSCLVEVGCIPSLLKLLSS-------KDSSTQENAIAALLNLS 449 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~---r~~i~~~G~ip~Lv~lL~s-------~~~~~~~~A~~aL~nLs 449 (685)
.++..+..|++.+.+.|..++-.+..+.+.++.+ ++.+.++=+.+.|-++|.+ +....+.-|+++|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4677789999888888999999999999866633 4457888667888899988 34678889999999999
Q ss_pred cCcchh--HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHH
Q 039015 450 KHCKSK--SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALV 527 (685)
Q Consensus 450 ~~~~~k--~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~ 527 (685)
.+++.. ..|+ +-||.|++++.++...++...|..+|..++..++.+..+.+ .|+|+.|++.+.+ .+.....|+.
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHHHH
Confidence 877653 4443 56999999999883449999999999999999999999999 9999999999988 6667889999
Q ss_pred HHHHhcCCCCcHHHHHhc----CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcH--HHHHhcCC----hHHHHHHh
Q 039015 528 AIFGLLMHSGNHWRFLAA----GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGT--IAILHHGA----LDMIMKIL 597 (685)
Q Consensus 528 aL~nLs~~~~n~~~iv~~----G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~--~~i~~~g~----v~~Lv~lL 597 (685)
+|.+++...+....--.. .+++.+-..+ ........-..+..|..+-...... .......- ...+..++
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~f-s~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDF-SSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHH-HhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 999987654421111111 2344444444 2333444556677777665443211 11111111 23344477
Q ss_pred hcCCChhHHHHHHHHHHHHhc
Q 039015 598 DSCTSRAGKEYCVSLLLALCI 618 (685)
Q Consensus 598 ~~~~s~~~~e~a~~~L~~L~~ 618 (685)
++..++..+..+..+...|..
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 766567777766655555544
No 86
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.90 E-value=0.00025 Score=78.55 Aligned_cols=275 Identities=13% Similarity=0.076 Sum_probs=170.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhcCCch-----hhHHHhhCC--HHH--HHHhhcCCCHHHHHHHHHHhhccc-cCcc
Q 039015 384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFN-----RSCLVEVGC--IPS--LLKLLSSKDSSTQENAIAALLNLS-KHCK 453 (685)
Q Consensus 384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~-----r~~i~~~G~--ip~--Lv~lL~s~~~~~~~~A~~aL~nLs-~~~~ 453 (685)
+.+.+++++...+..++.+|..+...+... ...+.+.|- +-. .+.++..+-...-..+....+.++ .-+.
T Consensus 237 v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sk 316 (678)
T KOG1293|consen 237 VTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASK 316 (678)
T ss_pred hhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHh
Confidence 344556777778888888888877644111 112333331 111 111122222222223333334444 2234
Q ss_pred hhHHHHhcCcHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCch-----hHHHHhhcCCCcHHHHHHHhccCCHHHHH
Q 039015 454 SKSMVVESGGLDFIVDMVKKGL-----KVEARQHAAATLFYIASIE-----EYRKLIGENPEAIPALVDMVRDGTDRSKK 523 (685)
Q Consensus 454 ~k~~i~~~g~i~~Lv~lL~~~~-----~~e~~~~Aa~~L~~Ls~~~-----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 523 (685)
+.....+...++.++++|..+. .++.+.-++.-..-+.... .+++.+-+ .-....+..+....+.....
T Consensus 317 lq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~-~~t~~~l~~~~~~kd~~~~a 395 (678)
T KOG1293|consen 317 LQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILE-TTTESHLMCLPPIKDHDFVA 395 (678)
T ss_pred hhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHH-HHHHHHHccccccccHHHHH
Confidence 4556667778888888876441 2233333322222222211 23333333 22222333333344566677
Q ss_pred HHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCC
Q 039015 524 NALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSCT 601 (685)
Q Consensus 524 ~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~ 601 (685)
.|+-.+.+++..- .-+.-+-+..++.+|+++| .+++..+...++++|.|+... ..-+..+++.|||..+..++...
T Consensus 396 aa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~- 473 (678)
T KOG1293|consen 396 AALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP- 473 (678)
T ss_pred HHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC-
Confidence 7777777776321 1222245667899999999 788888999999999999875 66788899999999999999887
Q ss_pred ChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015 602 SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE 662 (685)
Q Consensus 602 s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 662 (685)
.+..+.++.++|.++..++.+.......+ .=....|..+..+.+..+++.+-.+||.|.-
T Consensus 474 ~~n~r~~~~~~Lr~l~f~~de~~k~~~~~-ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 474 DFNSRANSLWVLRHLMFNCDEEEKFQLLA-KIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred CchHHHHHHHHHHHHHhcchHHHHHHHHH-HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 88999999999999998876554444333 2235678899999999999999999998854
No 87
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.87 E-value=0.0032 Score=66.85 Aligned_cols=272 Identities=13% Similarity=0.084 Sum_probs=190.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCch---hhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchhHH
Q 039015 382 NFISDRLLEGTSEEKNKVAYEVRLLTKSSIFN---RSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 382 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~---r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
.+.+..|..++.-....+.+.|..++..+... -..-...|.+ -..+.+ .+.....-|+.+|..+...++-|-.
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l---~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~ 193 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFL---KEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA 193 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHH---HHHHhccCCCchHHHHHHHHHHHhcCcchhhe
Confidence 45567777777777776778888877644221 1122222323 234444 6777888899999999999999999
Q ss_pred HHhcCcHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCC-HHHHHHHHHHHHHhcCC
Q 039015 458 VVESGGLDFIVDMV-KKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT-DRSKKNALVAIFGLLMH 535 (685)
Q Consensus 458 i~~~g~i~~Lv~lL-~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~ 535 (685)
++.++++..++..+ .+..+-..+-...-.++-|++++...+.+.. .+.|+.|.+++++.. ..+..-.+.++.|+...
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999 4333678889999999999999998888855 899999999998765 66777889999999865
Q ss_pred CC-------cHHHHHhcCChHHHHHHhccC--CChhHHHHHHHHHHHH-------hc---------------C-------
Q 039015 536 SG-------NHWRFLAAGAVPLLLNLLTSS--DSEELITDSLAVLATL-------AE---------------K------- 577 (685)
Q Consensus 536 ~~-------n~~~iv~~G~v~~Lv~lL~~~--~~~~~~~~al~~L~~L-------a~---------------~------- 577 (685)
.+ ....|+..++.+. ++.|... +++++.+..--+-..| ++ +
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~-l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKT-LQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHH-HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence 52 3355666655554 4544332 3445544333222222 22 1
Q ss_pred --hhcHHHHHhcCC--hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHH
Q 039015 578 --LDGTIAILHHGA--LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKA 653 (685)
Q Consensus 578 --~~~~~~i~~~g~--v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A 653 (685)
.++...+-+.+- +..|+++|.....|..-..|+-=+....++-| .....+.+ -|+-+.+..|+...+++++-.|
T Consensus 352 FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP-~gk~vv~k-~ggKe~vM~Llnh~d~~Vry~A 429 (442)
T KOG2759|consen 352 FWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYP-EGKAVVEK-YGGKERVMNLLNHEDPEVRYHA 429 (442)
T ss_pred hHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCc-hHhHHHHH-hchHHHHHHHhcCCCchHHHHH
Confidence 123333433332 57888888876457777778888888887764 34555655 8999999999999999999888
Q ss_pred HHHHHHH
Q 039015 654 SALIRIL 660 (685)
Q Consensus 654 ~~lL~~l 660 (685)
-..++.|
T Consensus 430 LlavQ~l 436 (442)
T KOG2759|consen 430 LLAVQKL 436 (442)
T ss_pred HHHHHHH
Confidence 7777655
No 88
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.87 E-value=1.1e-05 Score=57.95 Aligned_cols=40 Identities=48% Similarity=0.566 Sum_probs=37.8
Q ss_pred CCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccc
Q 039015 410 SIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLS 449 (685)
Q Consensus 410 ~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs 449 (685)
+++++..+++.|+||.|+.+|.+.+.++++.|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999999999999997
No 89
>PTZ00429 beta-adaptin; Provisional
Probab=97.85 E-value=0.0047 Score=72.39 Aligned_cols=246 Identities=14% Similarity=0.126 Sum_probs=164.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV 459 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 459 (685)
.+..|...|.+.+...+..|++.+-.+...+.+.- .+.+.+++++.++|.+++....-.|.+.+.....-..+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL- 105 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL- 105 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-
Confidence 35667788888888888888876544433232221 24567788899999999999888888887644443333
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH
Q 039015 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH 539 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 539 (685)
++..+.+=+.+. ++..|..|+.+|.++-. ++ .+. -.++.+.+.+.+.++-+++.|+.++..+-....
T Consensus 106 ---aINtl~KDl~d~-Np~IRaLALRtLs~Ir~-~~---i~e---~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-- 172 (746)
T PTZ00429 106 ---AVNTFLQDTTNS-SPVVRALAVRTMMCIRV-SS---VLE---YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-- 172 (746)
T ss_pred ---HHHHHHHHcCCC-CHHHHHHHHHHHHcCCc-HH---HHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--
Confidence 366677777777 99999999999988744 12 121 246677888888899999999999999864333
Q ss_pred HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015 540 WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 540 ~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
..+.+.|.++.|.++| .+.++.+...|+.+|..+.......-. ...+.+..|+..+... +++.+-..+.+|....-.
T Consensus 173 elv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~y~P~ 249 (746)
T PTZ00429 173 QLFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPEC-NEWGQLYILELLAAQRPS 249 (746)
T ss_pred ccccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcC-ChHHHHHHHHHHHhcCCC
Confidence 3345678889999998 788999999999999999764322211 2233456666666655 777777766666443222
Q ss_pred CcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHH
Q 039015 620 GGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASA 655 (685)
Q Consensus 620 ~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~ 655 (685)
+..+.. .++..+...+++.++.+.-.|..
T Consensus 250 ~~~e~~-------~il~~l~~~Lq~~N~AVVl~Aik 278 (746)
T PTZ00429 250 DKESAE-------TLLTRVLPRMSHQNPAVVMGAIK 278 (746)
T ss_pred CcHHHH-------HHHHHHHHHhcCCCHHHHHHHHH
Confidence 212211 12445555566655554433333
No 90
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.84 E-value=1.5e-05 Score=79.29 Aligned_cols=66 Identities=17% Similarity=0.344 Sum_probs=57.8
Q ss_pred ccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCcc-ccCCCCcccHHHHhhHHHHHHh
Q 039015 281 FTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGER-LQSKELLVNLVLKRIIQDWSVD 346 (685)
Q Consensus 281 ~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~-l~~~~l~~n~~l~~~i~~~~~~ 346 (685)
+.||+|..++++|+-+ +|||+||..||..-+-...+.||.|... +-.+.+.|+...+.-|+.+.+.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 9999999999999988 7999999999999887779999999763 4445799999999888888764
No 91
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=6.3e-05 Score=87.45 Aligned_cols=72 Identities=31% Similarity=0.424 Sum_probs=68.1
Q ss_pred CCCCCccCcCccccCCCceecc-CcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLS-TGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNG 348 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~ 348 (685)
++|++|.-|+...+|.|||++| +|++.||+-|.+++-. ..+-|.||.+|+.+.+.||..++..|..|..++.
T Consensus 866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 6899999999999999999998 9999999999999987 7789999999999999999999999999988755
No 92
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.83 E-value=0.00083 Score=71.14 Aligned_cols=235 Identities=12% Similarity=0.111 Sum_probs=171.9
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcchhHH
Q 039015 381 ANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 381 i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
..+|...+++ .+.+...-|+++|..+.. -+++|..+..++++..++..|.+ .+-.+|-..+-++.-|+.++...+.
T Consensus 158 ~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~ 236 (442)
T KOG2759|consen 158 KGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEK 236 (442)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHH
Confidence 4566666655 677888889999999997 67999999999999999998843 4678888999999999999988888
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh-------HHHHhhcCCCcHHHHHHHhccC---CHHHHHHH--
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE-------YRKLIGENPEAIPALVDMVRDG---TDRSKKNA-- 525 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-------~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~A-- 525 (685)
+...+.|+.|..+++......+-.-.++++.||....+ ....+. .+-++.-++.|... +++...+-
T Consensus 237 ~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv--~~~v~k~l~~L~~rkysDEDL~~di~~ 314 (442)
T KOG2759|consen 237 LKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV--LCKVLKTLQSLEERKYSDEDLVDDIEF 314 (442)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH--hcCchHHHHHHHhcCCCcHHHHHHHHH
Confidence 87889999999999977456667788899999876552 223333 34566666766542 23322211
Q ss_pred -----HHHHHHhcCCC------------------------CcHHHHHhc--CChHHHHHHhccCCChhHHHHHHHHHHHH
Q 039015 526 -----LVAIFGLLMHS------------------------GNHWRFLAA--GAVPLLLNLLTSSDSEELITDSLAVLATL 574 (685)
Q Consensus 526 -----~~aL~nLs~~~------------------------~n~~~iv~~--G~v~~Lv~lL~~~~~~~~~~~al~~L~~L 574 (685)
-.-...||+.+ +|..++-+. .++..|+++|..+.++....-|+.=+...
T Consensus 315 L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~ 394 (442)
T KOG2759|consen 315 LTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEY 394 (442)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHH
Confidence 11122233321 244445443 37888999997766666665555555555
Q ss_pred hc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015 575 AE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 575 a~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
.. .|+|+..+-+.||=..++++|.+. +|.++-+|+.++..|-.+
T Consensus 395 Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 395 VRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHhh
Confidence 55 699999999999999999999998 999999999998776543
No 93
>PTZ00429 beta-adaptin; Provisional
Probab=97.81 E-value=0.0073 Score=70.85 Aligned_cols=147 Identities=9% Similarity=0.044 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
..+..+.+.|.+.++-+|..|+-++..+-..++ ..+.+.|.++.|..+|.+.|+.++.+|+.+|..+......+ .-
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~ 215 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IE 215 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hH
Confidence 456777788888999999999999999876454 34556789999999999999999999999999997654432 22
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH 535 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 535 (685)
...+.+..++..|..- +.=.+.....+|.... +...... ...+..+...|++.++.+.-.|+.+++++..+
T Consensus 216 l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~y~--P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 216 SSNEWVNRLVYHLPEC-NEWGQLYILELLAAQR--PSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHHHHHHHHhhcC-ChHHHHHHHHHHHhcC--CCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 2455566677776654 4445555555554321 1111111 23577777778888888888888888888754
No 94
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.78 E-value=0.0073 Score=65.37 Aligned_cols=273 Identities=20% Similarity=0.206 Sum_probs=190.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcchhHHHH
Q 039015 382 NFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKSKSMVV 459 (685)
Q Consensus 382 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~i~ 459 (685)
+.+...+-+.+.+++..+.+.+|.+.. +...-..+.+.+.--.++.-|.. .+..-++.|++.+..+.....+... +
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~ 105 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-I 105 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-C
Confidence 333334445558899999999999886 66777778887766666666655 3456778999988777655444322 3
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH
Q 039015 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH 539 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 539 (685)
..|.+..|+.+.... ++..+..|..+|..|+..+. ..+.. .|++..|++.+.+|+.+.....+.++..+..++..|
T Consensus 106 ~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P--~lv~~-~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 106 PRGVVRALVAIAEHE-DDRLRRICLETLCELALLNP--ELVAE-CGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--HHHHH-cCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 678899999999987 88999999999999987543 33444 889999999998888777778888999998888888
Q ss_pred HHHHhcCChHHHHHHhccC------CCh--hHHHHHHHHHHHHhcChhcHHHHHhcC--ChHHHHHHhhcCCChhHHHHH
Q 039015 540 WRFLAAGAVPLLLNLLTSS------DSE--ELITDSLAVLATLAEKLDGTIAILHHG--ALDMIMKILDSCTSRAGKEYC 609 (685)
Q Consensus 540 ~~iv~~G~v~~Lv~lL~~~------~~~--~~~~~al~~L~~La~~~~~~~~i~~~g--~v~~Lv~lL~~~~s~~~~e~a 609 (685)
..+...--++.++.-+... ++. +....+..++..+-.+-.|--.+...+ ++..|+..|+.+ ++.+++.-
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p-~~~ir~~I 260 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLP-NPEIRKAI 260 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCC-CHHHHHHH
Confidence 7665543455555554211 112 344555666666666666666555444 578888888776 77777766
Q ss_pred HHHHHHHhccC-----------------c----------------------------------HHHHHHHHhcCCcHHHH
Q 039015 610 VSLLLALCING-----------------G----------------------------------ANVVALLVKSPSLMGSL 638 (685)
Q Consensus 610 ~~~L~~L~~~~-----------------~----------------------------------~~~~~~l~~~~g~i~~L 638 (685)
+.++..+-.-. + .-...++.+ .|+++.|
T Consensus 261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~-~gL~~~L 339 (371)
T PF14664_consen 261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIE-AGLLEAL 339 (371)
T ss_pred HHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHH-cChHHHH
Confidence 66666552200 0 002334455 8999999
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHHHH
Q 039015 639 YSLLSQG-SSRASKKASALIRILHE 662 (685)
Q Consensus 639 ~~Ll~~g-~~~~k~~A~~lL~~l~~ 662 (685)
++++.+. ++...+||.-||.-+-.
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHH
Confidence 9999998 77888999988876543
No 95
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.77 E-value=0.0026 Score=70.79 Aligned_cols=264 Identities=16% Similarity=0.210 Sum_probs=179.2
Q ss_pred HHHHHHHHhhcCCchhhHHHhhCCHHHHHHhh----------cCCCHHHHHHHHHHhhccccCc-chhHHHHhcCcHHHH
Q 039015 399 VAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL----------SSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFI 467 (685)
Q Consensus 399 a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL----------~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~i~~L 467 (685)
|+.+|+.+++ ++.+-..+....++..|.++- ...+..+...|+++|+|+-.+. ..|..+++.|+.+.+
T Consensus 1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3567888886 677777777777777777754 2367899999999999998766 558888899999999
Q ss_pred HHHhcCC----CCHHHHHHHHHHHHHhcC-chhHHHHhhcCCCcHHHHHHHhccC-----------------CHHHHHHH
Q 039015 468 VDMVKKG----LKVEARQHAAATLFYIAS-IEEYRKLIGENPEAIPALVDMVRDG-----------------TDRSKKNA 525 (685)
Q Consensus 468 v~lL~~~----~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~-----------------~~~~~~~A 525 (685)
+..|+.. .+.+..-....+||-++. ..+.+..+..+.+++..|+..|... +......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999876 267888899999998876 4477777777678888888866410 12345578
Q ss_pred HHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc--------CCChhHHHHHHHHHHHHhcC-hhc-------HHHHH----
Q 039015 526 LVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS--------SDSEELITDSLAVLATLAEK-LDG-------TIAIL---- 585 (685)
Q Consensus 526 ~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~--------~~~~~~~~~al~~L~~La~~-~~~-------~~~i~---- 585 (685)
++++||+..+......--..+.++.|+.+|.. .+.......++.+|.|+--. ... ...+.
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 89999998765544332334556666665431 12356667788888887321 111 11111
Q ss_pred hcCChHHHHHHhhcC----CC---hhHHHHHHHHHHHHhccCcHHHHHHHH---------------hcCCcHHHHHHHHh
Q 039015 586 HHGALDMIMKILDSC----TS---RAGKEYCVSLLLALCINGGANVVALLV---------------KSPSLMGSLYSLLS 643 (685)
Q Consensus 586 ~~g~v~~Lv~lL~~~----~s---~~~~e~a~~~L~~L~~~~~~~~~~~l~---------------~~~g~i~~L~~Ll~ 643 (685)
....+..|+.+|... .. ...-..-+.+|..++..+ ..+++.+. ++..+-..|+.|+.
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 111256677766531 11 123334566666777654 33444443 35668899999999
Q ss_pred cCChHHHHHHHHHHHHHHHhh
Q 039015 644 QGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 644 ~g~~~~k~~A~~lL~~l~~~~ 664 (685)
+..+..|..++.+|..|.+-.
T Consensus 319 ~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCCchHHHHHHHHHHHHHhhh
Confidence 999999999999999997643
No 96
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.8e-05 Score=83.46 Aligned_cols=70 Identities=19% Similarity=0.371 Sum_probs=58.1
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC-----CCcccHHHHhhHHHHHHh
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK-----ELLVNLVLKRIIQDWSVD 346 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~-----~l~~n~~l~~~i~~~~~~ 346 (685)
.+..+|.|.||...+.+||+++|||+||..||.+-+.. ...||.|+..+... ...+|..+..+|..|+..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 56889999999999999999999999999999997774 78999999988642 233466777788777655
No 97
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0011 Score=73.49 Aligned_cols=271 Identities=15% Similarity=0.135 Sum_probs=176.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhh--HHHh--hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRS--CLVE--VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~--~i~~--~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
.++.|.+.|.+.+...+..|..+|..+++.+++--. +.-+ .-.||.++.+.+++++.++..|+..+...-.... .
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~-q 207 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT-Q 207 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-H
Confidence 588999999999888899999999999985533211 1111 1358999999999999999999998865544332 2
Q ss_pred HHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 456 SMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 456 ~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
..+. -...++.+..+-... ++++|.+.+.+|..|.....-|-.=.- .++|+.++...++.+..+--.|+.....++.
T Consensus 208 al~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 208 ALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 3333 244566666666555 999999999999988765543322222 4688888888888888888889999988988
Q ss_pred CCCcHHHHHh--cCChHHHHHHhc-cCCC---------------------------------------------------
Q 039015 535 HSGNHWRFLA--AGAVPLLLNLLT-SSDS--------------------------------------------------- 560 (685)
Q Consensus 535 ~~~n~~~iv~--~G~v~~Lv~lL~-~~~~--------------------------------------------------- 560 (685)
.+--+..+.. ...||.|++=+. ++.+
T Consensus 286 qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 286 QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccc
Confidence 7743333322 346666655332 0000
Q ss_pred ---hhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH----HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCC
Q 039015 561 ---EELITDSLAVLATLAEKLDGTIAILHHGALDMIMK----ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPS 633 (685)
Q Consensus 561 ---~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~----lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g 633 (685)
=.++.-++++|..|+. +.....++.++- .|.+. .=.++|.++-+|..++.++.+.....+ +.
T Consensus 366 ~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L---pe 434 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL---PE 434 (885)
T ss_pred cccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch---HH
Confidence 0122223333333333 112222344444 44333 445788899999999987644443333 23
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015 634 LMGSLYSLLSQGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 634 ~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 664 (685)
++|.|+.++.+..+-+|.-.-|.|...+.|-
T Consensus 435 Lip~l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 435 LIPFLLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred HHHHHHHHhccCccceeeeeeeeHhhhhhhH
Confidence 6899999999988877777777776666653
No 98
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.001 Score=72.47 Aligned_cols=234 Identities=16% Similarity=0.148 Sum_probs=164.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHh-hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVE-VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
...+-|..+|+.++++++.-+--.|..+-.+- .+.....+ ...++.++.-+.++++.+|..|+.-+.....-....-.
T Consensus 208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI-~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI-RSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-hcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 34677788898888888865544444443211 11111212 35788999999999999999999888777655555555
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHH---HHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAA---TLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~---~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
..-.|++..++..+........++.|.. .|..+......+..|.- ...|..|.+.+.+...+++..++.-+..|-.
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~ 365 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY-GSIIEVLTKYLSDDREETRIAVLNWIILLYH 365 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHh
Confidence 5578889999998887633334444333 24445444444444432 4578899999999899999999999988877
Q ss_pred CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015 535 HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL 614 (685)
Q Consensus 535 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~ 614 (685)
..++....-...+.+.|++-| ++.++.+...++.+++++|.++....- -..+..|+++.+.. ..-....+.-++.
T Consensus 366 ~~p~ql~~h~~~if~tLL~tL-sd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~-~~~l~~Rg~lIIR 440 (675)
T KOG0212|consen 366 KAPGQLLVHNDSIFLTLLKTL-SDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKED-TKLLEVRGNLIIR 440 (675)
T ss_pred hCcchhhhhccHHHHHHHHhh-cCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhh-hHHHHhhhhHHHH
Confidence 777777666778899999999 888899999999999999998776521 11244556655553 4455667777888
Q ss_pred HHhcc
Q 039015 615 ALCIN 619 (685)
Q Consensus 615 ~L~~~ 619 (685)
.||..
T Consensus 441 qlC~l 445 (675)
T KOG0212|consen 441 QLCLL 445 (675)
T ss_pred HHHHH
Confidence 88864
No 99
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.63 E-value=0.0043 Score=67.92 Aligned_cols=220 Identities=13% Similarity=0.029 Sum_probs=122.5
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 380 LANFISDRLL-EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 380 ~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
.++.|+..|. ..+.++...++..+. ...++ .++..|+..|.+.+..++..++.+|..+
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i---------- 113 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL--AQEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWL---------- 113 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence 4666677773 344555444333322 11111 1266777777777777777777777643
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN 538 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 538 (685)
...++.+.|+..|++. ++.++..++.++.. .+ ....+.|..+|++.++.++..|+.+|..|
T Consensus 114 ~~~~a~~~L~~~L~~~-~p~vR~aal~al~~----------r~--~~~~~~L~~~L~d~d~~Vra~A~raLG~l------ 174 (410)
T TIGR02270 114 GGRQAEPWLEPLLAAS-EPPGRAIGLAALGA----------HR--HDPGPALEAALTHEDALVRAAALRALGEL------ 174 (410)
T ss_pred CchHHHHHHHHHhcCC-ChHHHHHHHHHHHh----------hc--cChHHHHHHHhcCCCHHHHHHHHHHHHhh------
Confidence 2455666777777666 66666665555444 11 23456777777777777777777777665
Q ss_pred HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHh----cC------------------ChHHHHHH
Q 039015 539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILH----HG------------------ALDMIMKI 596 (685)
Q Consensus 539 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~----~g------------------~v~~Lv~l 596 (685)
-...+++.|...+ .+.++.++..|+..|..+-. +.....+.. .| .++.|..+
T Consensus 175 ----~~~~a~~~L~~al-~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~l 248 (410)
T TIGR02270 175 ----PRRLSESTLRLYL-RDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLREL 248 (410)
T ss_pred ----ccccchHHHHHHH-cCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHH
Confidence 2344555566666 56667777777776655533 222222111 11 12223333
Q ss_pred hhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 597 LDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 597 L~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
++.. .++..++.+|..+- .+.+++.|...+.+.. .++.|...++.+..-
T Consensus 249 l~d~---~vr~~a~~AlG~lg-------------~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 249 LQAA---ATRREALRAVGLVG-------------DVEAAPWCLEAMREPP--WARLAGEAFSLITGM 297 (410)
T ss_pred hcCh---hhHHHHHHHHHHcC-------------CcchHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence 3321 23333333333221 2346778888776544 888898888888773
No 100
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.57 E-value=0.00086 Score=71.34 Aligned_cols=175 Identities=19% Similarity=0.191 Sum_probs=141.8
Q ss_pred hhhHHHhhCCHHHHHHhhcCCCHHH--HHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 039015 413 NRSCLVEVGCIPSLLKLLSSKDSST--QENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYI 490 (685)
Q Consensus 413 ~r~~i~~~G~ip~Lv~lL~s~~~~~--~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L 490 (685)
-...|..-|++..|++++.+++.+. +..|...|-.+. ..+|++.++.-| +..|+.+-+....++.....+.+|.+|
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3456777899999999999987655 667777765543 357889998777 667777666555789999999999999
Q ss_pred cCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC--cHHHHHhcCChHHHHHHhccCCChhHHHHH
Q 039015 491 ASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG--NHWRFLAAGAVPLLLNLLTSSDSEELITDS 567 (685)
Q Consensus 491 s~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~a 567 (685)
-.+. +.+..+.. .|++..++-..+..++.....++-||.|.+.+.. .+.+|++..+.+-|.-+- .+.++-++-.|
T Consensus 250 FKHSeet~~~Lva-a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~A 327 (832)
T KOG3678|consen 250 FKHSEETCQRLVA-AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHA 327 (832)
T ss_pred hhhhHHHHHHHHh-hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHH
Confidence 8765 67777877 8999999999888889999999999999997764 788999999999999887 45577778888
Q ss_pred HHHHHHHhcChhcHHHHHhcCChH
Q 039015 568 LAVLATLAEKLDGTIAILHHGALD 591 (685)
Q Consensus 568 l~~L~~La~~~~~~~~i~~~g~v~ 591 (685)
+-+.+.|+.+.+.-..+..+|.+.
T Consensus 328 ClAV~vlat~KE~E~~VrkS~Tla 351 (832)
T KOG3678|consen 328 CLAVAVLATNKEVEREVRKSGTLA 351 (832)
T ss_pred HHHHhhhhhhhhhhHHHhhccchh
Confidence 888899999888888887777543
No 101
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.55 E-value=4.8e-05 Score=82.76 Aligned_cols=67 Identities=24% Similarity=0.523 Sum_probs=56.2
Q ss_pred CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcc-cHHHHhhHHHH
Q 039015 276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV-NLVLKRIIQDW 343 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~-n~~l~~~i~~~ 343 (685)
++.+++.||+|..++.||+.. .|||.||+.|+..|... +..||.|+..+......+ ...++..+..|
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 477889999999999999995 99999999999999998 899999988887665555 34556666555
No 102
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.49 E-value=0.00018 Score=51.61 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=37.3
Q ss_pred chhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 039015 493 IEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLL 533 (685)
Q Consensus 493 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 533 (685)
+++++..+.+ .|+||.|+.+|+++++.+++.|++||.||+
T Consensus 1 ~~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVE-AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHH-TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3678899998 999999999999999999999999999997
No 103
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.46 E-value=0.00013 Score=60.33 Aligned_cols=49 Identities=27% Similarity=0.518 Sum_probs=38.2
Q ss_pred CCCccCcCccccCCC-ceec-cCcccccHHHHHHHHHc--CCCCCCCCCcccc
Q 039015 278 PDDFTCPISLEIMKD-PVTL-STGHTYDRASILKWFRA--GNSTCPKTGERLQ 326 (685)
Q Consensus 278 ~~~~~CpIc~~~m~d-Pv~~-~cghtfcr~ci~~~~~~--~~~~CP~c~~~l~ 326 (685)
+-+-.||.|...-.| |++. .|+|.|...||.+|+.. ...+||+||+...
T Consensus 30 ~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 30 PFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 444567777776666 5555 79999999999999985 3679999998764
No 104
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=6.7e-05 Score=78.45 Aligned_cols=47 Identities=23% Similarity=0.456 Sum_probs=40.5
Q ss_pred ccCcCccccCCCc---eeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 281 FTCPISLEIMKDP---VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 281 ~~CpIc~~~m~dP---v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
+.|.||++-+.+- .++||+|.|...||..|+......||.|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 6999999999865 3579999999999999999855669999997654
No 105
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0094 Score=67.59 Aligned_cols=239 Identities=15% Similarity=0.150 Sum_probs=173.9
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhhcCC------chh------hHHH-----hhCCHHHHHHhhcCCCHHHHHHH
Q 039015 381 ANFISDRLLE--GTSEEKNKVAYEVRLLTKSSI------FNR------SCLV-----EVGCIPSLLKLLSSKDSSTQENA 441 (685)
Q Consensus 381 i~~Lv~~L~s--~~~~~~~~a~~~L~~La~~~~------~~r------~~i~-----~~G~ip~Lv~lL~s~~~~~~~~A 441 (685)
.+.|++-|.. .|++...-++..+..+..+++ ..+ .||. ..+.|..|+..+...|-.++..|
T Consensus 63 mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~a 142 (970)
T KOG0946|consen 63 MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYA 142 (970)
T ss_pred cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHH
Confidence 4666677754 478888888999888876552 222 2333 34899999999999999999999
Q ss_pred HHHhhccccCc--chhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc-C
Q 039015 442 IAALLNLSKHC--KSKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRD-G 517 (685)
Q Consensus 442 ~~aL~nLs~~~--~~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~ 517 (685)
+..|.+|-.+. +-+..+. .+-+|..++.+|... ...+|-.|+-.|..|..+...-..+..-..++..|+.++.. |
T Consensus 143 IqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 143 IQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG 221 (970)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 99998886554 3355555 689999999999987 67778888888899998886666665546799999999975 3
Q ss_pred CH---HHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccC--CCh----------hHHHHHHHHHHHHhcC----
Q 039015 518 TD---RSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSS--DSE----------ELITDSLAVLATLAEK---- 577 (685)
Q Consensus 518 ~~---~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~--~~~----------~~~~~al~~L~~La~~---- 577 (685)
.. -+..+++..|.||..+. .|...+.+.+.||.|.++|... .+. .-...++.++..|..-
T Consensus 222 g~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~ 301 (970)
T KOG0946|consen 222 GLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTS 301 (970)
T ss_pred CCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 22 35789999999999755 5999999999999999998421 111 1123356666666541
Q ss_pred ---hhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHHHHHHHHhccC
Q 039015 578 ---LDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCVSLLLALCING 620 (685)
Q Consensus 578 ---~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~L~~~~ 620 (685)
..++.++...+.+..|.. ++..|-...+...++-++.++.+++
T Consensus 302 ~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn 348 (970)
T KOG0946|consen 302 SITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGN 348 (970)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc
Confidence 123345667777888888 5555445567777888888887765
No 106
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0075 Score=61.87 Aligned_cols=259 Identities=15% Similarity=0.093 Sum_probs=168.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhhcCCchh----hHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhc
Q 039015 386 DRLLEGTSEEKNKVAYEVRLLTKSSIFNR----SCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVES 461 (685)
Q Consensus 386 ~~L~s~~~~~~~~a~~~L~~La~~~~~~r----~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~ 461 (685)
..|...+..++.-+++.+.-+..+.+.|- ..++++|..|.++..+..+|.++...|+..+..++..++.-..|.+.
T Consensus 89 rGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeS 168 (524)
T KOG4413|consen 89 RGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFES 168 (524)
T ss_pred hcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhccc
Confidence 33444455556666666666655444232 23457899999999999999999999999999999999998888877
Q ss_pred CcHHHHHHH--hcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCC
Q 039015 462 GGLDFIVDM--VKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRD-GTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 462 g~i~~Lv~l--L~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~ 537 (685)
.....+-.. --+. +.-+|......+..+++.. +.....-. .|.+..|..=|+. .+.-+..+++...+.|...+.
T Consensus 169 ellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckk-SGLldlLeaElkGteDtLVianciElvteLaeteH 246 (524)
T KOG4413|consen 169 ELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKK-SGLLDLLEAELKGTEDTLVIANCIELVTELAETEH 246 (524)
T ss_pred ccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhh-hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh
Confidence 665554322 2223 4566777777777775544 44444444 7888887777665 455677788899999988888
Q ss_pred cHHHHHhcCChHHHHHHhcc-CCChhHHHHHHHHHHHHhcC----hhcHHHHHhcC--ChHHHHHHhhcCCChhHHHHHH
Q 039015 538 NHWRFLAAGAVPLLLNLLTS-SDSEELITDSLAVLATLAEK----LDGTIAILHHG--ALDMIMKILDSCTSRAGKEYCV 610 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~~-~~~~~~~~~al~~L~~La~~----~~~~~~i~~~g--~v~~Lv~lL~~~~s~~~~e~a~ 610 (685)
.+..+.+.|.|+.+-+++.. +.++--.-.++.....+-+. ...-+++++.- +|....+++... ++...+.|+
T Consensus 247 greflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAi 325 (524)
T KOG4413|consen 247 GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAI 325 (524)
T ss_pred hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHH
Confidence 88999999999999999832 22333333355554444332 22233444332 244555566665 899999999
Q ss_pred HHHHHHhccCcHHHHHHHHhcCC--cHHHHHHHHhcCChHHH
Q 039015 611 SLLLALCINGGANVVALLVKSPS--LMGSLYSLLSQGSSRAS 650 (685)
Q Consensus 611 ~~L~~L~~~~~~~~~~~l~~~~g--~i~~L~~Ll~~g~~~~k 650 (685)
-+|..+..+. +..+.+.+ .| ....++.-..+.+..++
T Consensus 326 DalGilGSnt--eGadlllk-Tgppaaehllarafdqnahak 364 (524)
T KOG4413|consen 326 DALGILGSNT--EGADLLLK-TGPPAAEHLLARAFDQNAHAK 364 (524)
T ss_pred HHHHhccCCc--chhHHHhc-cCChHHHHHHHHHhcccccch
Confidence 9999998773 44455555 33 34444433333344443
No 107
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=6.9e-05 Score=75.38 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=44.6
Q ss_pred ccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 281 FTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 281 ~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
-.|+||+..+.-||.++|+|.||.-||+--+..+..+||+|+.+++++
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 469999999999999999999999999998888888999999999864
No 108
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.024 Score=60.56 Aligned_cols=239 Identities=21% Similarity=0.222 Sum_probs=171.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-----chh----hHHHhhCCHHHHHHhhcC------CCHHHHHHHHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSI-----FNR----SCLVEVGCIPSLLKLLSS------KDSSTQENAIA 443 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~-----~~r----~~i~~~G~ip~Lv~lL~s------~~~~~~~~A~~ 443 (685)
..++.|+..|...+.++-...+..|+.|...+. +.. ..+++.++++.|++-+.. ....-..+++.
T Consensus 125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~ 204 (536)
T KOG2734|consen 125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLA 204 (536)
T ss_pred ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHH
Confidence 358899999999999999999999999986552 222 245667899999986654 23445667788
Q ss_pred HhhccccCc-chhHHHHhcCcHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhc----c
Q 039015 444 ALLNLSKHC-KSKSMVVESGGLDFIVDMVK-KGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVR----D 516 (685)
Q Consensus 444 aL~nLs~~~-~~k~~i~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~----~ 516 (685)
++-|+.... +-...+++.|.+.-|+.-+. .+.-..-+..|..+|.-+-.+. +++...+. -.+|..|++-+. +
T Consensus 205 vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 205 VVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhhcchhhcc
Confidence 888887655 44778888887777776443 4323455778888888776655 58888888 788998888663 2
Q ss_pred C----C-HHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHH---HHHhcC
Q 039015 517 G----T-DRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTI---AILHHG 588 (685)
Q Consensus 517 ~----~-~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~---~i~~~g 588 (685)
+ + .+..++--.+|+.+...++|+.+++...+++...-+++ .....+-.++.+|..+..++++.. .+++..
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr--~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLR--EKKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHH--HHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 2 1 24556777788888889999999999988887666663 245566779999999888776554 468888
Q ss_pred ChHHHHH-HhhcC--------CChhHHHHHHHHHHHHhccC
Q 039015 589 ALDMIMK-ILDSC--------TSRAGKEYCVSLLLALCING 620 (685)
Q Consensus 589 ~v~~Lv~-lL~~~--------~s~~~~e~a~~~L~~L~~~~ 620 (685)
|+..+.. +|+.+ +.....++-+++|+.+-.+.
T Consensus 362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 8888877 56432 13445567888888876643
No 109
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.36 E-value=0.001 Score=56.09 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=70.6
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015 381 ANFISDRL-LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV 459 (685)
Q Consensus 381 i~~Lv~~L-~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 459 (685)
|+.|++.| ++.++.+|..|++.|..+- ...++|.|+.++.++++.++..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889988 8889999999988887332 1245999999999999999999999999883
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039015 460 ESGGLDFIVDMVKKGLKVEARQHAAATLF 488 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~ 488 (685)
...+++.|.+++.++.+..+|..|+.+|.
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45689999999988746667888888763
No 110
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.36 E-value=0.002 Score=64.96 Aligned_cols=182 Identities=19% Similarity=0.120 Sum_probs=119.7
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcC--CchhhHHHhh--CCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCc
Q 039015 388 LLEGTSEEKNKVAYEVRLLTKSS--IFNRSCLVEV--GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGG 463 (685)
Q Consensus 388 L~s~~~~~~~~a~~~L~~La~~~--~~~r~~i~~~--G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~ 463 (685)
-.+.+.+.|..|+..|+.+..++ ......+.+. ..++.+...+.+.+..+...|+.++..|+..-...-.-.-...
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 36688999999999999999877 3444444433 6677888888888888999999999999876554432234567
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCc-HHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-cHHH
Q 039015 464 LDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEA-IPALVDMVRDGTDRSKKNALVAIFGLLMHSG-NHWR 541 (685)
Q Consensus 464 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~ 541 (685)
++.|+..+..+ +..++..|..+|..+...-.+.. .+ ++.+...+.+.++..+..++..|..+....+ +...
T Consensus 96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 89999999988 88899999999999876544221 22 5667777888899999999999988875444 2222
Q ss_pred HHh----cCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015 542 FLA----AGAVPLLLNLLTSSDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 542 iv~----~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~ 577 (685)
+-. ..+++.+...+ .|.++++++.|-.++..+...
T Consensus 169 l~~~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLL-SDADPEVREAARECLWALYSH 207 (228)
T ss_dssp G--HHHHHHHHHHHHHHH-TSS-HHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHH
Confidence 211 33677778888 789999999999999999664
No 111
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00017 Score=71.58 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=43.8
Q ss_pred CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHc-CCCCCCCCCcccc
Q 039015 276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRA-GNSTCPKTGERLQ 326 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~-~~~~CP~c~~~l~ 326 (685)
.-..+-.||+|++.-..|.+. +|||.||..||..-+.. ..++||.|+....
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 556788999999999999988 59999999999987763 4689999998764
No 112
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.33 E-value=0.01 Score=66.14 Aligned_cols=232 Identities=19% Similarity=0.205 Sum_probs=156.7
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCC-----CHHHHHHHHHHhhccccC-cchhHHHH-hcC
Q 039015 390 EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSK-----DSSTQENAIAALLNLSKH-CKSKSMVV-ESG 462 (685)
Q Consensus 390 s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~-----~~~~~~~A~~aL~nLs~~-~~~k~~i~-~~g 462 (685)
..+.++..+|+++|.|+...++..|..+.+.|+.+.++..|+.. +.++.--..++|.-++.. .+.+..++ +.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 45778899999999999999999999999999999999999875 678888888888777644 45565555 568
Q ss_pred cHHHHHHHhcCC----------------CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccC---------
Q 039015 463 GLDFIVDMVKKG----------------LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDG--------- 517 (685)
Q Consensus 463 ~i~~Lv~lL~~~----------------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~--------- 517 (685)
++..|+..|... ...+....+..++||+......... ....+.++.|+.++..-
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 888888876310 1345567788899999765432222 11134555555554311
Q ss_pred CHHHHHHHHHHHHHhcCCCC-c-------HH----HHHhcCChHHHHHHhcc----CC---ChhHHHHHHHHHHHHhcC-
Q 039015 518 TDRSKKNALVAIFGLLMHSG-N-------HW----RFLAAGAVPLLLNLLTS----SD---SEELITDSLAVLATLAEK- 577 (685)
Q Consensus 518 ~~~~~~~A~~aL~nLs~~~~-n-------~~----~iv~~G~v~~Lv~lL~~----~~---~~~~~~~al~~L~~La~~- 577 (685)
.......++.+|.|+-.... . .. ......++..|+++|.. .. -.+...-.+.+|..++..
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 24567788889988821110 0 00 01223356777777742 11 135666788888888876
Q ss_pred hhcHHHHHh--------------cCC--hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHH
Q 039015 578 LDGTIAILH--------------HGA--LDMIMKILDSCTSRAGKEYCVSLLLALCINGGAN 623 (685)
Q Consensus 578 ~~~~~~i~~--------------~g~--v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~ 623 (685)
...|..+.. .|. -..|+++|.+. .+.+++.+...|+.||..+...
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vaellf~Lc~~d~~~ 342 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAELLFVLCKEDASR 342 (446)
T ss_pred HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHHHHHHHhhhHHH
Confidence 344444322 132 47788888877 6899999999999999875433
No 113
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.31 E-value=0.0036 Score=58.39 Aligned_cols=95 Identities=15% Similarity=0.264 Sum_probs=79.5
Q ss_pred cCCccccchhhHHHHHHHHHhhHHhHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhccCcchhHhHHhhhHHHHH
Q 039015 44 KSEFFSTNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQ 123 (685)
Q Consensus 44 ~~~~~~~~k~~~~~l~r~l~lL~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~~i~~~ 123 (685)
.+... ..|..+..+..-++.|.|+++||...+..++.+-..-++.|...|++|+.|++.|+ +. +-|=++.-..+..+
T Consensus 26 ~~k~~-~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~s-k~-~r~n~~kk~~y~~K 102 (147)
T PF05659_consen 26 SKKSL-SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCS-KV-RRWNLYKKPRYARK 102 (147)
T ss_pred HHHHH-hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhc-cc-cHHHHHhhHhHHHH
Confidence 33434 56788889999999999999999987765666658889999999999999999999 54 56777788999999
Q ss_pred HHHHHHHHHHHhhc-cCCc
Q 039015 124 LRLFIRAIGTALDV-LPLA 141 (685)
Q Consensus 124 f~~~~~~l~~~L~~-lP~~ 141 (685)
++++..+|.+.++. +|+.
T Consensus 103 i~~le~~l~~f~~v~~q~~ 121 (147)
T PF05659_consen 103 IEELEESLRRFIQVDLQLH 121 (147)
T ss_pred HHHHHHHHHHHhcchhHHH
Confidence 99999999999884 5554
No 114
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00011 Score=83.94 Aligned_cols=49 Identities=31% Similarity=0.619 Sum_probs=43.7
Q ss_pred CCCccCcCccccCCC-----ceeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 278 PDDFTCPISLEIMKD-----PVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 278 ~~~~~CpIc~~~m~d-----Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
..+-.|+||.+.|.. |-.++|||.|+..|+.+|++. ..+||.|+..+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhhc
Confidence 447899999999999 788999999999999999998 8899999985443
No 115
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.28 E-value=8.6e-05 Score=69.78 Aligned_cols=45 Identities=20% Similarity=0.451 Sum_probs=40.7
Q ss_pred ccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 281 FTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 281 ~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
|.|-||.+-++.||++.|||.||..|.-+-+.. ..+|-.|++...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence 999999999999999999999999998887776 678999988654
No 116
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00013 Score=73.27 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=47.0
Q ss_pred CccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhH
Q 039015 280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRII 340 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i 340 (685)
.|.|-||.+.+.+||++.|||+||..|-.+.+.. ...|++|++.... .+.+...|....
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g-~~~~akeL~~~L 299 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG-SFNVAKELLVSL 299 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccc-ccchHHHHHHHH
Confidence 3999999999999999999999999998888876 6789999887643 444444444443
No 117
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.26 E-value=0.021 Score=61.82 Aligned_cols=254 Identities=17% Similarity=0.085 Sum_probs=174.5
Q ss_pred HHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCC-CCHHHHH
Q 039015 403 VRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKG-LKVEARQ 481 (685)
Q Consensus 403 L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~e~~~ 481 (685)
|-.+-+.++.-|..+.-.-..+.+..++-+++.+++-.+.+++..+..+.+.-..+.+.+.--.++.-|... .+...|+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~ 86 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVERE 86 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHH
Confidence 334444455555555555556666655555569999999999999999999988888888888888888764 2567799
Q ss_pred HHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCCh
Q 039015 482 HAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSE 561 (685)
Q Consensus 482 ~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~ 561 (685)
.|...+..+...++....+- .|++..+|.+..+.+++.+..|+.+|.-|+..+. ..+..+||+..|++.+. ++.-
T Consensus 87 QALkliR~~l~~~~~~~~~~--~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~-d~~~ 161 (371)
T PF14664_consen 87 QALKLIRAFLEIKKGPKEIP--RGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALI-DGSF 161 (371)
T ss_pred HHHHHHHHHHHhcCCcccCC--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHH-hccH
Confidence 99999998877655444442 5889999999999889999999999999986543 34679999999999994 4444
Q ss_pred hHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH-Hhhc----C-CCh--hHHHHHHHHHHHHh-ccCcHHHHHHHHhcC
Q 039015 562 ELITDSLAVLATLAEKLDGTIAILHHGALDMIMK-ILDS----C-TSR--AGKEYCVSLLLALC-INGGANVVALLVKSP 632 (685)
Q Consensus 562 ~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~----~-~s~--~~~e~a~~~L~~L~-~~~~~~~~~~l~~~~ 632 (685)
.+.+..+.++..+-.+|..|.-+...-.+..++. +... . .+. ..-..+..++..+- .-+| ....-..+-
T Consensus 162 ~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G--Ll~l~~~~~ 239 (371)
T PF14664_consen 162 SISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG--LLYLSMNDF 239 (371)
T ss_pred hHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc--eeeeecCCc
Confidence 5888899999999999998887755334777766 3322 1 011 11223333333332 2211 000001111
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 633 SLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 633 g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
..+..|+..+.-+++..++..-.++--+=+.
T Consensus 240 ~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 240 RGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 3566788888888888888777776665544
No 118
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.065 Score=62.58 Aligned_cols=138 Identities=14% Similarity=0.113 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHh----hCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHH
Q 039015 395 EKNKVAYEVRLLTKSSIFNRSCLVE----VGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVD 469 (685)
Q Consensus 395 ~~~~a~~~L~~La~~~~~~r~~i~~----~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~ 469 (685)
-..-++.+|+++.+.+++-...+.. .|..+.+..+|.+ .++.++..|+.++..++.+.+.-..|++.|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 3445788899998888866555543 3788888888876 7889999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCC
Q 039015 470 MVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDG-TDRSKKNALVAIFGLLMH 535 (685)
Q Consensus 470 lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~ 535 (685)
+|.+. +..|+.+..+|+.|+++.+....-.+ .|++..+..++-.. +++.+..|+..|..|..+
T Consensus 1821 lLHS~--PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1821 LLHSQ--PSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHhcC--hHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 99876 78899999999999999988777777 88888888877544 477777888888777543
No 119
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.24 E-value=0.0013 Score=55.48 Aligned_cols=88 Identities=26% Similarity=0.431 Sum_probs=69.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHH
Q 039015 464 LDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFL 543 (685)
Q Consensus 464 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv 543 (685)
|+.|++.|.+..++.+|..|+.+|..+ +. ..+++.|+.+++++++.++..|+.+|..+ -
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GD-PEAIPALIELLKDEDPMVRRAAARALGRI----------G 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------TH-HHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CC-HhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------C
Confidence 678999994343999999999998844 22 34799999999999999999999999987 2
Q ss_pred hcCChHHHHHHhccCCChhHHHHHHHHHH
Q 039015 544 AAGAVPLLLNLLTSSDSEELITDSLAVLA 572 (685)
Q Consensus 544 ~~G~v~~Lv~lL~~~~~~~~~~~al~~L~ 572 (685)
...+++.|.+++.++.+..++..|+.+|+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45589999999966666667888887764
No 120
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.20 E-value=0.0003 Score=75.30 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=45.9
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc----CCCCCCCCCccccCCC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA----GNSTCPKTGERLQSKE 329 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~----~~~~CP~c~~~l~~~~ 329 (685)
+-..+..|.+|.+.-.||+...|.|+|||.||..|... .+-+||.|...++-+.
T Consensus 532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 33556889999999999999999999999999998863 3579999999887653
No 121
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.13 E-value=0.0029 Score=63.81 Aligned_cols=188 Identities=19% Similarity=0.189 Sum_probs=117.0
Q ss_pred CCHHHHHHHHHHHHHhcCch---hHHHHhhc-CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHH
Q 039015 475 LKVEARQHAAATLFYIASIE---EYRKLIGE-NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPL 550 (685)
Q Consensus 475 ~~~e~~~~Aa~~L~~Ls~~~---~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~ 550 (685)
.+++.|..|+..|..+.... +....+.. -...+..++..+.+....+.+.|+.++..|+..-++.-.-.-...+|.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~ 98 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP 98 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 38999999999999887655 33333322 013445666666666667788999999998865554433334457899
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCc---HHHHHH
Q 039015 551 LLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGG---ANVVAL 627 (685)
Q Consensus 551 Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~---~~~~~~ 627 (685)
|++.+ .++...+.+.|..+|..+..+-.....+. ++.+...+.+. ++.++..++..|..+....+ ......
T Consensus 99 Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 99 LLKKL-GDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHGG-G---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHH-ccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 99999 56778899999999999988633111111 24445567777 99999999999998877654 111111
Q ss_pred HHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcccCC
Q 039015 628 LVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHSS 669 (685)
Q Consensus 628 l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~~ 669 (685)
..- ..+++.+..++.++++.+|+.|..++..+.+++..+..
T Consensus 173 ~~~-~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 173 AFL-KQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp HHH-HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred chH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 000 23577999999999999999999999999988765433
No 122
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.12 E-value=0.00071 Score=48.11 Aligned_cols=40 Identities=35% Similarity=0.477 Sum_probs=36.7
Q ss_pred CchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc
Q 039015 411 IFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSK 450 (685)
Q Consensus 411 ~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~ 450 (685)
++++..+.+.|++|.|+.+|.+++..++..|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3578899999999999999999999999999999999873
No 123
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00035 Score=71.89 Aligned_cols=47 Identities=28% Similarity=0.570 Sum_probs=40.6
Q ss_pred CCCccCcCccccCCC-------------ceeccCcccccHHHHHHHHHcCCCCCCCCCccc
Q 039015 278 PDDFTCPISLEIMKD-------------PVTLSTGHTYDRASILKWFRAGNSTCPKTGERL 325 (685)
Q Consensus 278 ~~~~~CpIc~~~m~d-------------Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l 325 (685)
.++-.|.||++-|.. |-.++|||.+.-+|+..|.+. ..+||+|+.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 567899999988543 357899999999999999998 78999999985
No 124
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.11 E-value=0.055 Score=59.35 Aligned_cols=151 Identities=16% Similarity=0.135 Sum_probs=113.7
Q ss_pred CCHHHHHHhhc-CCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHH
Q 039015 421 GCIPSLLKLLS-SKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKL 499 (685)
Q Consensus 421 G~ip~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 499 (685)
.+++.|+..|. ..+.++...++.++.... ...++..++..|... +..++..++.+|..
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~----------~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~---------- 112 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQE----------DALDLRSVLAVLQAG-PEGLCAGIQAALGW---------- 112 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccC----------ChHHHHHHHHHhcCC-CHHHHHHHHHHHhc----------
Confidence 45888888884 466777666665553211 112489999999988 88899999888874
Q ss_pred hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015 500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD 579 (685)
Q Consensus 500 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~ 579 (685)
|+. .++.+.|+.+|.+.++.++..++.++.. ......+.|..+| .+.+..+...|+.+|..+..
T Consensus 113 i~~-~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~--- 176 (410)
T TIGR02270 113 LGG-RQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAAL-THEDALVRAAALRALGELPR--- 176 (410)
T ss_pred CCc-hHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHh-cCCCHHHHHHHHHHHHhhcc---
Confidence 444 7789999999999999998888877765 2233567899999 68889999999999988753
Q ss_pred cHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015 580 GTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL 616 (685)
Q Consensus 580 ~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L 616 (685)
...++.|...+.+. ++.++..|+..|..+
T Consensus 177 -------~~a~~~L~~al~d~-~~~VR~aA~~al~~l 205 (410)
T TIGR02270 177 -------RLSESTLRLYLRDS-DPEVRFAALEAGLLA 205 (410)
T ss_pred -------ccchHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 23466677777776 999999998888665
No 125
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.06 E-value=0.012 Score=55.04 Aligned_cols=129 Identities=17% Similarity=0.289 Sum_probs=102.5
Q ss_pred HhhcCCCcHHHHHHHhccCCH------HHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCC-ChhHHHHHHHHH
Q 039015 499 LIGENPEAIPALVDMVRDGTD------RSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSD-SEELITDSLAVL 571 (685)
Q Consensus 499 ~i~~~~g~i~~Lv~lL~~~~~------~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~~~al~~L 571 (685)
.+.. .||+..|++++.+|+. .....++.|+..|-.++-.....++...|...+..+.... +..+...|+++|
T Consensus 6 EFI~-~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFIS-RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHh-ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 3445 6889999999998873 6677889999998776655566666677788888885433 678999999999
Q ss_pred HHHhcChhcHHHHHhcCC-hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHH
Q 039015 572 ATLAEKLDGTIAILHHGA-LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLV 629 (685)
Q Consensus 572 ~~La~~~~~~~~i~~~g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~ 629 (685)
.++..+.......+.... ++.|+..|+.+ ++..+.+|++.+-.|....++.-++.+.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 999998777666666665 99999999987 9999999999999998877665555444
No 126
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.02 E-value=0.11 Score=55.77 Aligned_cols=184 Identities=21% Similarity=0.237 Sum_probs=127.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
..+..+++.+.+.+...+..|+..+..+.. .-++|.|..+|.+.+..++..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 357888888888888888888877544432 346899999999999999999999776653
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCH------------HHHHHHH
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTD------------RSKKNAL 526 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~------------~~~~~A~ 526 (685)
...+++.++..|.+..+..+|..|+.+|..+-. ..++..|+..+.+... ..+..++
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 456789999999953389999999999988743 3347777887776552 2334444
Q ss_pred HHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHH
Q 039015 527 VAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGK 606 (685)
Q Consensus 527 ~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~ 606 (685)
.+|..+ -+.-.++.+...+ .+....++..|...|..+.... ....+.+...+... +..++
T Consensus 171 ~~l~~~----------~~~~~~~~l~~~l-~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~-~~~vr 230 (335)
T COG1413 171 EALGEL----------GDPEAIPLLIELL-EDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE-SLEVR 230 (335)
T ss_pred HHHHHc----------CChhhhHHHHHHH-hCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC-CHHHH
Confidence 444433 3344678888888 5666788888888888887764 12234444455544 55555
Q ss_pred HHHHHHHH
Q 039015 607 EYCVSLLL 614 (685)
Q Consensus 607 e~a~~~L~ 614 (685)
..++.+|.
T Consensus 231 ~~~~~~l~ 238 (335)
T COG1413 231 KAALLALG 238 (335)
T ss_pred HHHHHHhc
Confidence 54444443
No 127
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00037 Score=70.02 Aligned_cols=48 Identities=17% Similarity=0.418 Sum_probs=39.7
Q ss_pred CccCcCccccCCC--c-eeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 280 DFTCPISLEIMKD--P-VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 280 ~~~CpIc~~~m~d--P-v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
...|.||++-+.+ - +.+||.|.|...|+.+|+..-...||.|+..++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3689999987753 2 4569999999999999999667899999988753
No 128
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.1 Score=53.81 Aligned_cols=235 Identities=14% Similarity=0.143 Sum_probs=156.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHH--HhhcCCCHHHHHHHHHHhhccc-cCcchhH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLL--KLLSSKDSSTQENAIAALLNLS-KHCKSKS 456 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv--~lL~s~~~~~~~~A~~aL~nLs-~~~~~k~ 456 (685)
..+.++..+...+.++-..|.+.|..++. .+..-..+.+......+- .+-...+.-++...+..+..++ ..+....
T Consensus 129 ilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesan 207 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESAN 207 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHh
Confidence 45667777777888888899999999997 566666777765544432 2222234445555566655554 4455566
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCC--HHHHHHHHH----HHH
Q 039015 457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT--DRSKKNALV----AIF 530 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~A~~----aL~ 530 (685)
.....|.+..|..-|+...+.-++.++......|+.....++.+.. .|.|..+..++...+ |-.+-.++. .+.
T Consensus 208 eckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfralmgfgkffg 286 (524)
T KOG4413|consen 208 ECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRALMGFGKFFG 286 (524)
T ss_pred HhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc
Confidence 6668899999998888644677788999999999999999999988 999999999886432 333333333 333
Q ss_pred HhcCCCCcHHHHHhc--CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCC--hHHHHH-HhhcCCChhH
Q 039015 531 GLLMHSGNHWRFLAA--GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGA--LDMIMK-ILDSCTSRAG 605 (685)
Q Consensus 531 nLs~~~~n~~~iv~~--G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~--v~~Lv~-lL~~~~s~~~ 605 (685)
++...+-.-..++++ -+|..-..++ ...++++.+.|..++..+.++.+|++.+...|. ...++- ..... ...-
T Consensus 287 keaimdvseeaicealiiaidgsfEmi-EmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqn-ahak 364 (524)
T KOG4413|consen 287 KEAIMDVSEEAICEALIIAIDGSFEMI-EMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQN-AHAK 364 (524)
T ss_pred chHHhhcCHHHHHHHHHHHHHhhHHhh-hcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccc-ccch
Confidence 443333222222222 1234445555 345788999999999999999999999988774 333433 44332 3344
Q ss_pred HHHHHHHHHHHhc
Q 039015 606 KEYCVSLLLALCI 618 (685)
Q Consensus 606 ~e~a~~~L~~L~~ 618 (685)
++.++-+|.+++.
T Consensus 365 qeaaihaLaaIag 377 (524)
T KOG4413|consen 365 QEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHHHhhc
Confidence 5667777777764
No 129
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.15 Score=57.74 Aligned_cols=255 Identities=15% Similarity=0.174 Sum_probs=143.2
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcch-
Q 039015 377 MKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKS- 454 (685)
Q Consensus 377 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~- 454 (685)
.+..++.|+.+|...|+.++-.|+..|..||+.++.|--.+ -|.+..+|.+ .|-=+...-+..+.+|+-.+.-
T Consensus 179 lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL 253 (877)
T KOG1059|consen 179 LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL 253 (877)
T ss_pred HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchh
Confidence 34456677777776777777777777777777666655433 3555665544 3333445555666666655432
Q ss_pred hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHH--HhcCc-hhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 039015 455 KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLF--YIASI-EEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFG 531 (685)
Q Consensus 455 k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~--~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 531 (685)
.. -.+++|..++.+..-+...-.++.++. +++.. ++.-..|.- ++..|-.++.+.++..+--++-|+.-
T Consensus 254 gK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL---CvqKLr~fiedsDqNLKYlgLlam~K 325 (877)
T KOG1059|consen 254 GK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL---CVQKLRIFIEDSDQNLKYLGLLAMSK 325 (877)
T ss_pred hh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH---HHHHHhhhhhcCCccHHHHHHHHHHH
Confidence 22 236777777766533334444444432 33332 233334433 67777778888888888889999888
Q ss_pred hcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHH
Q 039015 532 LLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCV 610 (685)
Q Consensus 532 Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~ 610 (685)
+..-+. ..+.+ --+.+++.| ++.++.++-.|+.+|..+... ++-.+|+ ..|+. +.+.. ....+..-+
T Consensus 326 I~ktHp---~~Vqa-~kdlIlrcL-~DkD~SIRlrALdLl~gmVsk-kNl~eIV-----k~LM~~~~~ae-~t~yrdell 393 (877)
T KOG1059|consen 326 ILKTHP---KAVQA-HKDLILRCL-DDKDESIRLRALDLLYGMVSK-KNLMEIV-----KTLMKHVEKAE-GTNYRDELL 393 (877)
T ss_pred HhhhCH---HHHHH-hHHHHHHHh-ccCCchhHHHHHHHHHHHhhh-hhHHHHH-----HHHHHHHHhcc-chhHHHHHH
Confidence 864322 22222 134467888 788999999999999988764 3333332 34555 33332 235566666
Q ss_pred HHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhc-CChHHHHHHHHHHHH
Q 039015 611 SLLLALCINGGANVVALLVKSPSLMGSLYSLLSQ-GSSRASKKASALIRI 659 (685)
Q Consensus 611 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~-g~~~~k~~A~~lL~~ 659 (685)
.-+..+|..+.-...... .=.+..|++|..- |+.++..-|..++.+
T Consensus 394 ~~II~iCS~snY~~ItdF---EWYlsVlveLa~l~~~~~G~~I~eQi~Dv 440 (877)
T KOG1059|consen 394 TRIISICSQSNYQYITDF---EWYLSVLVELARLEGTRHGSLIAEQIIDV 440 (877)
T ss_pred HHHHHHhhhhhhhhhhhH---HHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 666677766432211111 1123455555543 344444444444433
No 130
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.73 E-value=0.038 Score=64.01 Aligned_cols=168 Identities=17% Similarity=0.213 Sum_probs=118.1
Q ss_pred hcCCCHHHHHHHHHHH-HHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHH
Q 039015 388 LLEGTSEEKNKVAYEV-RLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDF 466 (685)
Q Consensus 388 L~s~~~~~~~~a~~~L-~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~ 466 (685)
|.+++...|..|++.+ ..++. +... .-..|-+++...+.|.++..-.--=|.+.+...+....+ ++..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~-G~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSL-GEDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhc-CCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHH
Confidence 5666777777777664 34443 3221 122455566666777887777766666767666543333 3667
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcC
Q 039015 467 IVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAG 546 (685)
Q Consensus 467 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G 546 (685)
+..=|++. ++..|..|..++..| ...+.++. +++++.+++.++++.+++.|+-|++++ +.-.+....+.|
T Consensus 97 i~kDl~d~-N~~iR~~AlR~ls~l----~~~el~~~---~~~~ik~~l~d~~ayVRk~Aalav~kl--y~ld~~l~~~~g 166 (757)
T COG5096 97 IQKDLQDP-NEEIRGFALRTLSLL----RVKELLGN---IIDPIKKLLTDPHAYVRKTAALAVAKL--YRLDKDLYHELG 166 (757)
T ss_pred HHhhccCC-CHHHHHHHHHHHHhc----ChHHHHHH---HHHHHHHHccCCcHHHHHHHHHHHHHH--HhcCHhhhhccc
Confidence 77777777 889998888888777 33455554 788888888888889999999888887 444555667788
Q ss_pred ChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015 547 AVPLLLNLLTSSDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 547 ~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~ 577 (685)
.+..+..++ .+.++.++..|+..|..+...
T Consensus 167 ~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 167 LIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 888888888 677888888888888888553
No 131
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.61 E-value=0.0043 Score=43.98 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=35.7
Q ss_pred hhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 494 EEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 494 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
++++..+.+ .|+++.|++++.+++++.++.|+++|.||+.
T Consensus 2 ~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVD-AGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 357778888 9999999999998899999999999999973
No 132
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.013 Score=63.73 Aligned_cols=263 Identities=14% Similarity=0.124 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hHHHHhcCcHHHHHHHhcC
Q 039015 395 EKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KSMVVESGGLDFIVDMVKK 473 (685)
Q Consensus 395 ~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g~i~~Lv~lL~~ 473 (685)
.-..++..|..+++.-..-|.-+..+....+|+++|+.++..+.--+...++|+..--.| +..+.+.|.|..|+.++.+
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 344566677788876667788888999999999999987777777788888998755444 8999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHhcCchhHH--HHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----cHHHHHhcCC
Q 039015 474 GLKVEARQHAAATLFYIASIEEYR--KLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG----NHWRFLAAGA 547 (685)
Q Consensus 474 ~~~~e~~~~Aa~~L~~Ls~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~----n~~~iv~~G~ 547 (685)
. +...|.+..|+|.+|..+++.- -.... .-++..++++..++.-.+....+..|.|+..+.. .+.-.+++.-
T Consensus 485 K-DdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p 562 (743)
T COG5369 485 K-DDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATP 562 (743)
T ss_pred c-hhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecCh
Confidence 7 7889999999999999877544 23333 3468889999888777888899999999976432 2332333322
Q ss_pred ----hHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHH-hcCC-hHHHHHHhh---------cCCCh---------
Q 039015 548 ----VPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAIL-HHGA-LDMIMKILD---------SCTSR--------- 603 (685)
Q Consensus 548 ----v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~-~~g~-v~~Lv~lL~---------~~~s~--------- 603 (685)
...|++.+ ...++......+-+|.++|.+.+....++ +... +..+-++|- -|+.+
T Consensus 563 ~~ylfk~l~~k~-e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~ 641 (743)
T COG5369 563 RRYLFKRLIDKY-EENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISY 641 (743)
T ss_pred HHHHHHHHHHHH-HhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccce
Confidence 22344444 33455556666778888877666665543 3332 333333322 11100
Q ss_pred -------------------------------h---HHHHHHHHHHHHhcc--CcH------HHHHHHHhcCCcHHHHHHH
Q 039015 604 -------------------------------A---GKEYCVSLLLALCIN--GGA------NVVALLVKSPSLMGSLYSL 641 (685)
Q Consensus 604 -------------------------------~---~~e~a~~~L~~L~~~--~~~------~~~~~l~~~~g~i~~L~~L 641 (685)
. ......+++.++... +.+ +..+.+.. .|+-+.|+.+
T Consensus 642 ~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~-~G~~e~l~k~ 720 (743)
T COG5369 642 TIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCA-NGIREWLVKI 720 (743)
T ss_pred eeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHH-ccHHHHHHHH
Confidence 0 111122222222211 111 23445555 7888888888
Q ss_pred HhcCChHHHHHHHHHHHHHH
Q 039015 642 LSQGSSRASKKASALIRILH 661 (685)
Q Consensus 642 l~~g~~~~k~~A~~lL~~l~ 661 (685)
....+..+++++..+|..++
T Consensus 721 q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 721 QAKDSLIVREKIGTALENLR 740 (743)
T ss_pred hccCcHHHHHHHHHHHHhhh
Confidence 88888899999999998875
No 133
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.1 Score=57.55 Aligned_cols=272 Identities=16% Similarity=0.131 Sum_probs=171.4
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCCchhh-HHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH-hcC
Q 039015 385 SDRLLEGTSEEKNKVAYEVRLLTKSSIFNRS-CLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV-ESG 462 (685)
Q Consensus 385 v~~L~s~~~~~~~~a~~~L~~La~~~~~~r~-~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~-~~g 462 (685)
..++..++......+++.+-.+-+.-.-.+. .+--.+.||.|-.-+...++.++..-+.-|..|=.-++ .+.+- -..
T Consensus 130 L~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~ 208 (675)
T KOG0212|consen 130 LCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-LEMISYLPS 208 (675)
T ss_pred HHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-HHHHhcchH
Confidence 3444444444445556655555543222222 55556778888777777788888877777666543333 23332 467
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHH
Q 039015 463 GLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRF 542 (685)
Q Consensus 463 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 542 (685)
.++.|..+|... +.++|..+-.+|.++-..=.+..........++.|+.-+++..+..+..|+.-|.-...-.++....
T Consensus 209 ~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~ 287 (675)
T KOG0212|consen 209 LLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL 287 (675)
T ss_pred HHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh
Confidence 788899999988 8999987777666543211222222233567999999999999999999999999888777766666
Q ss_pred HhcCChHHHHHHhccCCChhHHHHHHH---HHHHHhcChhcHHHHHhcCC-hHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015 543 LAAGAVPLLLNLLTSSDSEELITDSLA---VLATLAEKLDGTIAILHHGA-LDMIMKILDSCTSRAGKEYCVSLLLALCI 618 (685)
Q Consensus 543 v~~G~v~~Lv~lL~~~~~~~~~~~al~---~L~~La~~~~~~~~i~~~g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~ 618 (685)
.-+|+...++..+...+.+...+.+.. .|..+...+..... .+-|. +..+.+.+.+. ...++-.+..-+..|-.
T Consensus 288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~ 365 (675)
T KOG0212|consen 288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYH 365 (675)
T ss_pred hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHh
Confidence 677888888888832222233333322 34555555555544 45554 67777777766 77777777777766665
Q ss_pred cCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 619 NGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 619 ~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
..+.+ .+.....+.+.|+.-+++.++.+-..+..++..+...
T Consensus 366 ~~p~q---l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 366 KAPGQ---LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred hCcch---hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 54433 2333345677777777777777666666666655443
No 134
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0022 Score=65.50 Aligned_cols=50 Identities=28% Similarity=0.576 Sum_probs=44.5
Q ss_pred CCCCCccCcCccccCCCceecc-CcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLS-TGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
..++.-.||+|..--.+|..+. +|..||..||-.+... +.+||+|+.+..
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS 346 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence 5678899999999999998774 7999999999999996 899999988764
No 135
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.48 E-value=0.16 Score=54.46 Aligned_cols=163 Identities=23% Similarity=0.286 Sum_probs=112.7
Q ss_pred hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHH
Q 039015 420 VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKL 499 (685)
Q Consensus 420 ~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 499 (685)
.-.++.++.+|.+.+..++..|...+..+. ..-+++.+..++... +..+|..|+.+|..+
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~--------- 101 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDE-DPRVRDAAADALGEL--------- 101 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCC-CHHHHHHHHHHHHcc---------
Confidence 356889999999998999999988854432 456799999999988 888888888855443
Q ss_pred hhcCCCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH-HHhcC
Q 039015 500 IGENPEAIPALVDMVR-DGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLA-TLAEK 577 (685)
Q Consensus 500 i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~-~La~~ 577 (685)
+. ..+++.|+.++. +++..++..|+.+|..+ .+..++..|+..+. +..... +...+. .+...
T Consensus 102 -~~-~~a~~~li~~l~~d~~~~vR~~aa~aL~~~----------~~~~a~~~l~~~l~-~~~~~~---a~~~~~~~~~~~ 165 (335)
T COG1413 102 -GD-PEAVPPLVELLENDENEGVRAAAARALGKL----------GDERALDPLLEALQ-DEDSGS---AAAALDAALLDV 165 (335)
T ss_pred -CC-hhHHHHHHHHHHcCCcHhHHHHHHHHHHhc----------CchhhhHHHHHHhc-cchhhh---hhhhccchHHHH
Confidence 33 568999999998 58889999999999887 33344888999984 332211 111110 00000
Q ss_pred -hhcHHHHH---hcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015 578 -LDGTIAIL---HHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 578 -~~~~~~i~---~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
......+. ....++.+...+... ...++..|+.+|..+...
T Consensus 166 r~~a~~~l~~~~~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 166 RAAAAEALGELGDPEAIPLLIELLEDE-DADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHHHHcCChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcc
Confidence 00011112 222478888888877 788999999999888876
No 136
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.15 Score=57.05 Aligned_cols=269 Identities=17% Similarity=0.200 Sum_probs=171.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHH-HHHHhhccccCcchhHHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQEN-AIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~-A~~aL~nLs~~~~~k~~i 458 (685)
..+.+.+.+.+.....+..|.+.+..+..+. .-..+.+.+.+..|-....+........ +.-+.-....+- ..-
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L---g~~ 209 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL---GPP 209 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc---CCC
Confidence 4566677778888889999999999988633 4566777888999988887754433332 222211111000 023
Q ss_pred HhcCcHHHHHHHhcC---CCCHHHHHHHHHHHHHhc-CchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 459 VESGGLDFIVDMVKK---GLKVEARQHAAATLFYIA-SIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~---~~~~e~~~~Aa~~L~~Ls-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
.+.+.++.+..+|.+ . ...+|..|..+...+- ..+.+.. .-.+|.++.-+.....+.+..++..|..|+.
T Consensus 210 ~EPyiv~~lp~il~~~~d~-~~~Vr~Aa~~a~kai~~~~~~~aV-----K~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDK-INKVREAAVEAAKAIMRCLSAYAV-----KLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred CCchHHhhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhcCcchh-----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 356667777666652 3 4566665555554331 1222221 2234555554444467889999999999998
Q ss_pred CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHH------------------------HH------
Q 039015 535 HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTI------------------------AI------ 584 (685)
Q Consensus 535 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~------------------------~i------ 584 (685)
.........-..+||.+.+.| .+..++++..+-.+|..++.--++.. .+
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl-~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV 362 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVL-WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFV 362 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHH-ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeee
Confidence 888888888899999999999 78889999999999988875222111 01
Q ss_pred --HhcCChHHHHHHhhcC---CChhHHHHHHHHHHHHhccC-cHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 039015 585 --LHHGALDMIMKILDSC---TSRAGKEYCVSLLLALCING-GANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIR 658 (685)
Q Consensus 585 --~~~g~v~~Lv~lL~~~---~s~~~~e~a~~~L~~L~~~~-~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~ 658 (685)
++...+..++.+++.+ .+...+..++.+.+|+|.-- ++....... .-++|-|...+.+.-|.+|.-|+..|.
T Consensus 363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCCChhHHHHHHHHHH
Confidence 1122234445555432 25567788999999999865 233333332 346777888888887888887777774
Q ss_pred HHHH
Q 039015 659 ILHE 662 (685)
Q Consensus 659 ~l~~ 662 (685)
.+.+
T Consensus 441 ~l~e 444 (569)
T KOG1242|consen 441 ALLE 444 (569)
T ss_pred HHHH
Confidence 4444
No 137
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.035 Score=60.65 Aligned_cols=200 Identities=11% Similarity=0.143 Sum_probs=142.4
Q ss_pred HHHHHHhhccccCcch-hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHHHHhhcCCCcHHHHHHHhcc
Q 039015 439 ENAIAALLNLSKHCKS-KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYRKLIGENPEAIPALVDMVRD 516 (685)
Q Consensus 439 ~~A~~aL~nLs~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~ 516 (685)
..++..|..+|..-.. |.-+.+..+.++|+++|.++ ...+.--+...++|+.. ....+..+.+ .|.|..|+.++.+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~-~~iIdvl~~~v~s 484 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLE-KSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHH-hhHHHHHHHHhhc
Confidence 3445556666655533 77788899999999999986 45555566777788754 3466777777 8999999999998
Q ss_pred CCHHHHHHHHHHHHHhcCCCC--cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC----hhcHHHHHhcCC-
Q 039015 517 GTDRSKKNALVAIFGLLMHSG--NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK----LDGTIAILHHGA- 589 (685)
Q Consensus 517 ~~~~~~~~A~~aL~nLs~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~----~~~~~~i~~~g~- 589 (685)
.+...+++..|.|+++-.+.+ .+-+.+..-++..++.+. +++.-.+.+.++.+|.|+.-+ ++.++-+....-
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 888889999999999987665 355678888899999999 788889999999999999652 222332222221
Q ss_pred ---hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHh
Q 039015 590 ---LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLS 643 (685)
Q Consensus 590 ---v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~ 643 (685)
...|++.++.. +|-..+..+-+|.+++..++. ....+......+..+.+++.
T Consensus 564 ~ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~-l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 564 RYLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDT-LDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred HHHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccch-HHHHHHhHHHHHHHHHHHHH
Confidence 24455666666 888888888999998877643 34444442444444444443
No 138
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.39 E-value=0.0013 Score=68.94 Aligned_cols=35 Identities=17% Similarity=0.468 Sum_probs=31.7
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHHH
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFR 312 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~ 312 (685)
++++.||||...+++|++++|||+.|+.|-...+-
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 57899999999999999999999999999876554
No 139
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.068 Score=59.86 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=124.1
Q ss_pred hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh---HHHHh--cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch
Q 039015 420 VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK---SMVVE--SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE 494 (685)
Q Consensus 420 ~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k---~~i~~--~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 494 (685)
..++|.|..+|.+++-..++-|..+|..+..+.... +..-. .-.+|.++++.++. ++..|..|.+.+-......
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC
Confidence 567999999999999999999999999998776431 11111 23588999999999 9999999998886554333
Q ss_pred hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH
Q 039015 495 EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATL 574 (685)
Q Consensus 495 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L 574 (685)
. ...+......++.|..+-.+.+++++++.+.+|..|......+..--=.++|+.++..- .+.++++.-+|+.....+
T Consensus 206 ~-qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~t-qd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 206 T-QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRT-QDVDENVALEACEFWLAL 283 (885)
T ss_pred c-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHc-cCcchhHHHHHHHHHHHH
Confidence 2 22222224478888888878889999999999998865443332111134566666666 677888999999999999
Q ss_pred hcChhcHHHHHhcC--ChHHHHH
Q 039015 575 AEKLDGTIAILHHG--ALDMIMK 595 (685)
Q Consensus 575 a~~~~~~~~i~~~g--~v~~Lv~ 595 (685)
|..+..+..+...= -+|.|++
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHc
Confidence 99987776654332 2566654
No 140
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.37 E-value=0.78 Score=45.86 Aligned_cols=233 Identities=16% Similarity=0.164 Sum_probs=148.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHH-------hhcC-----CCHHHHHHHHHHhhc
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLK-------LLSS-----KDSSTQENAIAALLN 447 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~-------lL~s-----~~~~~~~~A~~aL~n 447 (685)
+..++-.+.+ +..+..|+-+|..--+..++-...+-.. |.+..|++ .|.. ....-..+|+..|.-
T Consensus 28 ~~~~i~~l~~--~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQc 105 (293)
T KOG3036|consen 28 AYQLILSLVS--PPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQC 105 (293)
T ss_pred hhhHHHHhhC--CchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHH
Confidence 3444444443 3445566655544433223333333332 65555554 1111 233456688888899
Q ss_pred cccCcchhHHHHhcCcHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHH
Q 039015 448 LSKHCKSKSMVVESGGLDFIVDMVKKG----LKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRS 521 (685)
Q Consensus 448 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~----~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 521 (685)
++.+++.|..+..+..---+-.+|..+ ...-.|..+.+++..|..++ +.-..+.. .++||..++.+..|+...
T Consensus 106 vASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~-TeIVPlCLrime~GSelS 184 (293)
T KOG3036|consen 106 VASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLT-TEIVPLCLRIMESGSELS 184 (293)
T ss_pred HhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHH-hhhHHHHHHHHhcccHHH
Confidence 999999999999877655555555433 13456889999999998766 33344445 899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHhc----CC----hHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcC--Ch-
Q 039015 522 KKNALVAIFGLLMHSGNHWRFLAA----GA----VPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHG--AL- 590 (685)
Q Consensus 522 ~~~A~~aL~nLs~~~~n~~~iv~~----G~----v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g--~v- 590 (685)
|..|...+..+-.++..-..+.+. -+ ...++.-|.+.++..+...++.+..+|+.++..+.++...- ++
T Consensus 185 KtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lr 264 (293)
T KOG3036|consen 185 KTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLR 264 (293)
T ss_pred HHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhc
Confidence 999999988887777643333321 12 22233333356788899999999999999999988874421 11
Q ss_pred -HHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015 591 -DMIMKILDSCTSRAGKEYCVSLLLALCI 618 (685)
Q Consensus 591 -~~Lv~lL~~~~s~~~~e~a~~~L~~L~~ 618 (685)
...-.++++ ++..+..-...+.++|.
T Consensus 265 d~tfs~~l~~--D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 265 DGTFSLLLKD--DPETKQWLQQLLKNLCT 291 (293)
T ss_pred cchHHHHHhc--ChhHHHHHHHHHHHhcc
Confidence 112224443 55666666666666654
No 141
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.68 Score=52.53 Aligned_cols=275 Identities=19% Similarity=0.173 Sum_probs=141.5
Q ss_pred hhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCC--HHHHHHHHHHhhccccCc
Q 039015 375 GAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKD--SSTQENAIAALLNLSKHC 452 (685)
Q Consensus 375 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~--~~~~~~A~~aL~nLs~~~ 452 (685)
+.++..+..+...|.|.++.-+.-|+.++.++- +.++++.+.. -|| ++|-+++ .-++..|+-+|+.|-...
T Consensus 107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG--~re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~s 179 (938)
T KOG1077|consen 107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIG--SREMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKS 179 (938)
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhc--cHhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcC
Confidence 345567888888898999988889999998885 3455555432 244 5665533 446666666666665432
Q ss_pred chhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhc-------------------------CCC
Q 039015 453 KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGE-------------------------NPE 505 (685)
Q Consensus 453 ~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~-------------------------~~g 505 (685)
+ +.+--.+....++++|... +..+...++..+-.|+... +++..+.. .+=
T Consensus 180 p--Dl~~~~~W~~riv~LL~D~-~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 180 P--DLVNPGEWAQRIVHLLDDQ-HMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred c--cccChhhHHHHHHHHhCcc-ccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence 1 1222234556666666655 3444444444444444322 22222211 000
Q ss_pred cHHHHHHHhcc----CCHHHHH---HHHHHHHHhcCCCCcHHHHHhcC-------------------------ChHHHHH
Q 039015 506 AIPALVDMVRD----GTDRSKK---NALVAIFGLLMHSGNHWRFLAAG-------------------------AVPLLLN 553 (685)
Q Consensus 506 ~i~~Lv~lL~~----~~~~~~~---~A~~aL~nLs~~~~n~~~iv~~G-------------------------~v~~Lv~ 553 (685)
..-.|+++|+. .++..+. ..+.-|.|.+..+.-...+.+.. ++..|-+
T Consensus 257 L~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~ 336 (938)
T KOG1077|consen 257 LQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQ 336 (938)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11234444442 1122222 23334444443221111111111 1222333
Q ss_pred HhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCC
Q 039015 554 LLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPS 633 (685)
Q Consensus 554 lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g 633 (685)
+| ++....++-.|+.-++.|+++....+++..+ ...++..|+...+-.++..|+-.|..+|.. +++..++.
T Consensus 337 fl-s~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~IV~---- 407 (938)
T KOG1077|consen 337 FL-SHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQIVA---- 407 (938)
T ss_pred Hh-hcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHHHH----
Confidence 33 2223334444444444444444444444333 455666777433778899999999999987 44444443
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcccCCCC
Q 039015 634 LMGSLYSLLSQGSSRASKKASALIRILHEFYERHSSGS 671 (685)
Q Consensus 634 ~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~~~~ 671 (685)
-|+..+.+-+..+|+.-.-=..+|.+-+..+|+-+
T Consensus 408 ---elLqYL~tAd~sireeivlKvAILaEKyAtDy~Wy 442 (938)
T KOG1077|consen 408 ---ELLQYLETADYSIREEIVLKVAILAEKYATDYSWY 442 (938)
T ss_pred ---HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchh
Confidence 34555555677777766666666776666666544
No 142
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.00096 Score=49.38 Aligned_cols=46 Identities=26% Similarity=0.326 Sum_probs=39.3
Q ss_pred ccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 281 FTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 281 ~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
-.|.||.+--.|.|+..|||. .|..|=.+.+..++..||.||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 579999999999999999996 5888877777767999999998764
No 143
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.20 E-value=0.0015 Score=69.30 Aligned_cols=48 Identities=27% Similarity=0.554 Sum_probs=39.4
Q ss_pred CCCCCccCcCccccCCCce----eccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 276 LTPDDFTCPISLEIMKDPV----TLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv----~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
.+-+--+||+|++-|.+-+ ++.|.|+|...|+.+|+. .+||.||....
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 4455569999999999876 347999999999999965 48999987655
No 144
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.19 E-value=0.0012 Score=53.32 Aligned_cols=47 Identities=21% Similarity=0.526 Sum_probs=23.7
Q ss_pred CccCcCccccCC-C---ceec----cCcccccHHHHHHHHHc--C--------CCCCCCCCcccc
Q 039015 280 DFTCPISLEIMK-D---PVTL----STGHTYDRASILKWFRA--G--------NSTCPKTGERLQ 326 (685)
Q Consensus 280 ~~~CpIc~~~m~-d---Pv~~----~cghtfcr~ci~~~~~~--~--------~~~CP~c~~~l~ 326 (685)
+..|+||..... + |+.+ .|+++|...|+.+||.. + ..+||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 578999998765 2 4443 69999999999999974 1 125999998875
No 145
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.14 E-value=0.013 Score=62.07 Aligned_cols=51 Identities=29% Similarity=0.535 Sum_probs=45.8
Q ss_pred ccCcCccccCCCceecc-CcccccHHHHHHHHHcCCCCCCCCCccccCCCCcc
Q 039015 281 FTCPISLEIMKDPVTLS-TGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV 332 (685)
Q Consensus 281 ~~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~ 332 (685)
+.|.|++++-++||+.+ +||.|++.-|++++.+ ..+||+++++++..++++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 46999999999999885 9999999999999998 889999999998766655
No 146
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=1.3 Score=50.55 Aligned_cols=226 Identities=13% Similarity=0.170 Sum_probs=148.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc-CcchhH
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSK-HCKSKS 456 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~-~~~~k~ 456 (685)
+...+-++.+|+++-+-+|.+|+-.+..+.-.-++ .+. -.+|.|+.-|.++|+.++..|+.+++.|+. ++.|--
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Alr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---ALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 45567778899999999999999888776543332 222 357999999999999999999999999995 556644
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHH-HHHHHHHHHH--Hhc
Q 039015 457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDR-SKKNALVAIF--GLL 533 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~A~~aL~--nLs 533 (685)
.+ -|.+.++|-...+.=..........+|+-.. ..+|. ..+++|.+++.+.... ..-.++.++. |++
T Consensus 218 ~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplE---PRLgK--KLieplt~li~sT~AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 218 QL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLE---PRLGK--KLIEPITELMESTVAMSLLYECVNTVVAVSMS 287 (877)
T ss_pred cc-----cHHHHHHHhccCCCeehHHHHHHHhhccccC---chhhh--hhhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence 33 3556666654433333444455555555332 33443 4789999999876532 2222222222 455
Q ss_pred CCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHH
Q 039015 534 MHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSL 612 (685)
Q Consensus 534 ~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~ 612 (685)
....++...++. +|+.|-.++ .+.+..+.--++-++..++. |+....+ + -..++++|.+. ++.++-.|+-.
T Consensus 288 ~g~~d~~asiqL-CvqKLr~fi-edsDqNLKYlgLlam~KI~ktHp~~Vqa---~--kdlIlrcL~Dk-D~SIRlrALdL 359 (877)
T KOG1059|consen 288 SGMSDHSASIQL-CVQKLRIFI-EDSDQNLKYLGLLAMSKILKTHPKAVQA---H--KDLILRCLDDK-DESIRLRALDL 359 (877)
T ss_pred cCCCCcHHHHHH-HHHHHhhhh-hcCCccHHHHHHHHHHHHhhhCHHHHHH---h--HHHHHHHhccC-CchhHHHHHHH
Confidence 444454444443 466666666 67778888777777777765 3432222 2 24567788877 89999999999
Q ss_pred HHHHhccCcHHHHHHH
Q 039015 613 LLALCINGGANVVALL 628 (685)
Q Consensus 613 L~~L~~~~~~~~~~~l 628 (685)
|..+... .+..+++
T Consensus 360 l~gmVsk--kNl~eIV 373 (877)
T KOG1059|consen 360 LYGMVSK--KNLMEIV 373 (877)
T ss_pred HHHHhhh--hhHHHHH
Confidence 9998876 4544443
No 147
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.12 E-value=0.17 Score=51.21 Aligned_cols=194 Identities=16% Similarity=0.148 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHH-------hhcCCC-----HHHHHHHHHHhhccccCcchhHHH
Q 039015 392 TSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLK-------LLSSKD-----SSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 392 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~-------lL~s~~-----~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
+++.|..|+.+|..--+..++-.-.+-.. |.+..|++ .|+.+. ..-..+|+..|.-++.|++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 67778877766554332222222223333 77777765 233221 244557788888889999999999
Q ss_pred HhcCcHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015 459 VESGGLDFIVDMVKKGL----KVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGL 532 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 532 (685)
.++...--|..+|+... -.-.|..+.+++..|...+ +.-..+.. .+.||..++.+..|+.-.|..|.-.+..+
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~-tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ-TEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC-TTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh-hchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99888777777776441 2355788999999998755 44555555 89999999999999999999999999888
Q ss_pred cCCCCcHHHHHh--------cCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHh
Q 039015 533 LMHSGNHWRFLA--------AGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILH 586 (685)
Q Consensus 533 s~~~~n~~~iv~--------~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~ 586 (685)
-.++..-..+.+ ..+...++.-|..++++.+......+-..|+.++.++.++.+
T Consensus 167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 766653333222 123444444444677889999999999999999999998864
No 148
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.27 Score=58.83 Aligned_cols=218 Identities=17% Similarity=0.202 Sum_probs=133.9
Q ss_pred cCCCHHHHHHHHHHhhccccCcchhHHHHh--cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--chhHHHHhhcCCCc
Q 039015 431 SSKDSSTQENAIAALLNLSKHCKSKSMVVE--SGGLDFIVDMVKKGLKVEARQHAAATLFYIAS--IEEYRKLIGENPEA 506 (685)
Q Consensus 431 ~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~--~~~~~~~i~~~~g~ 506 (685)
++.+..+|..+..+|..|+..+.+.....+ ...-..+...++.. ...++..+..+|..|-. ..+....+.. .
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i~k---~ 739 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLIPK---L 739 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHHHH---H
Confidence 345789999999999999887554433332 23344444555544 45555555555555432 2466666655 6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcC------ChHHHHHHhccC-CChhHHHHH--HHHHHHHhcC
Q 039015 507 IPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAG------AVPLLLNLLTSS-DSEELITDS--LAVLATLAEK 577 (685)
Q Consensus 507 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G------~v~~Lv~lL~~~-~~~~~~~~a--l~~L~~La~~ 577 (685)
|+-++-.++..+...+..|-.+|+.++. .....+.| ++...+.++... ..+.....| +-++..+...
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 7777777788888899999999988873 11122222 444455555211 011222222 2223333221
Q ss_pred hhcHHHHHhcCChHHHHH----HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHH
Q 039015 578 LDGTIAILHHGALDMIMK----ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKA 653 (685)
Q Consensus 578 ~~~~~~i~~~g~v~~Lv~----lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A 653 (685)
...+++.+.++.+++ .|.++ ++.+...|++.+..++..-++....... +-+++.+..++++++...+.+.
T Consensus 816 ---~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~--~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 816 ---FKNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHL--EELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred ---HhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhH--HHHHHHHHHHHHhhhHHHHHHH
Confidence 111233333444443 56666 9999999999999999887665555444 2468999999999999999999
Q ss_pred HHHHHHHHH
Q 039015 654 SALIRILHE 662 (685)
Q Consensus 654 ~~lL~~l~~ 662 (685)
.-|+..|-+
T Consensus 890 r~LlekLir 898 (1176)
T KOG1248|consen 890 RLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHH
Confidence 988877644
No 149
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.32 Score=55.87 Aligned_cols=141 Identities=15% Similarity=0.199 Sum_probs=78.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCC---cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHH---
Q 039015 510 LVDMVRDGTDRSKKNALVAIFGLLMHSG---NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIA--- 583 (685)
Q Consensus 510 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~---n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~--- 583 (685)
++++|..++++....-...|..++.+.+ |....+=...|..++.+. ++.+++..|+.+|...-.++++-..
T Consensus 257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~---~~~~LrvlainiLgkFL~n~d~NirYva 333 (866)
T KOG1062|consen 257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR---SNSGLRVLAINILGKFLLNRDNNIRYVA 333 (866)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHhcCCccceeeee
Confidence 3444555555555555566666665443 333333333444444443 3455666666666655443322111
Q ss_pred ------HHhcC--Ch----HHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHH
Q 039015 584 ------ILHHG--AL----DMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASK 651 (685)
Q Consensus 584 ------i~~~g--~v----~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~ 651 (685)
+++.. ++ ..+++.|++. +...+..|+..+..|... .+++..+. -|+.++.+.++.-|.
T Consensus 334 Ln~L~r~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~mv~-------eLl~fL~~~d~~~k~ 403 (866)
T KOG1062|consen 334 LNMLLRVVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRVMVK-------ELLEFLESSDEDFKA 403 (866)
T ss_pred hhhHHhhhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHHHHH-------HHHHHHHhccHHHHH
Confidence 01111 11 5567788887 889999999999998876 44444333 567777777766663
Q ss_pred -HHHHHHHHHHHh
Q 039015 652 -KASALIRILHEF 663 (685)
Q Consensus 652 -~A~~lL~~l~~~ 663 (685)
.|..+..+-.+|
T Consensus 404 ~~as~I~~laEkf 416 (866)
T KOG1062|consen 404 DIASKIAELAEKF 416 (866)
T ss_pred HHHHHHHHHHHhc
Confidence 444455444444
No 150
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.09 E-value=0.21 Score=58.82 Aligned_cols=221 Identities=15% Similarity=0.135 Sum_probs=152.5
Q ss_pred HHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHh-hccccCcchhHHHHhcCcHHHHHHHhcCC-
Q 039015 397 NKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAAL-LNLSKHCKSKSMVVESGGLDFIVDMVKKG- 474 (685)
Q Consensus 397 ~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL-~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~- 474 (685)
.+|+..|..+-.-.+..-..-..-|..|..++||.++..+++---+-+= ..|+.++..+.-+++.++-.-.+++|..+
T Consensus 488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~ 567 (1387)
T KOG1517|consen 488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQ 567 (1387)
T ss_pred HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcC
Confidence 3444444444332222222333459999999999998888776555444 46678877888888888888888888763
Q ss_pred -CCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccC-CHHHHHHHHHHHHHhcC-CCCcHHHHHhcCChHH
Q 039015 475 -LKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDG-TDRSKKNALVAIFGLLM-HSGNHWRFLAAGAVPL 550 (685)
Q Consensus 475 -~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~ 550 (685)
-++|-|..||-+|..+..+- -.++...+ .+.|..-+..|.++ .+-.+.=.+-+|..|-. +++.|..=++.++.+.
T Consensus 568 ~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 568 AIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 24578888998998887765 33444444 78888888888775 35666677778887765 4557777788999999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHhcC-----hhcHHHH---Hh--------cCChH----HHHHHhhcCCChhHHHHHH
Q 039015 551 LLNLLTSSDSEELITDSLAVLATLAEK-----LDGTIAI---LH--------HGALD----MIMKILDSCTSRAGKEYCV 610 (685)
Q Consensus 551 Lv~lL~~~~~~~~~~~al~~L~~La~~-----~~~~~~i---~~--------~g~v~----~Lv~lL~~~~s~~~~e~a~ 610 (685)
|+.+| +++-++++..|+-+|..+..+ ++....+ .+ ...+. .++.++..| ++.++..-+
T Consensus 647 L~~~L-sD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~ 724 (1387)
T KOG1517|consen 647 LILLL-SDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVV 724 (1387)
T ss_pred HHHHh-cCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHH
Confidence 99999 788899999999999988763 2222221 11 11122 455567777 888887777
Q ss_pred HHHHHHhccC
Q 039015 611 SLLLALCING 620 (685)
Q Consensus 611 ~~L~~L~~~~ 620 (685)
-+|..+..+.
T Consensus 725 v~ls~~~~g~ 734 (1387)
T KOG1517|consen 725 VALSHFVVGY 734 (1387)
T ss_pred HHHHHHHHhh
Confidence 7777777654
No 151
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.18 Score=56.69 Aligned_cols=225 Identities=16% Similarity=0.172 Sum_probs=149.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC------cch
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH------CKS 454 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~------~~~ 454 (685)
+..|......++..++..|++.|-.|.....-.+.+ ....+++|++.+..++..|+.++.-.+.- .++
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~------Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKAC------YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHH------HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 444777778889999999999988887633222222 34567889888899999997766444321 122
Q ss_pred -hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh-------HHHHhh----------------c--------
Q 039015 455 -KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE-------YRKLIG----------------E-------- 502 (685)
Q Consensus 455 -k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-------~~~~i~----------------~-------- 502 (685)
...+ ...+...+.+.+... +..+|..|+.+|..+-...+ .|+.++ .
T Consensus 274 ~e~kl-~D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 274 EEEKL-KDAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhh-HHHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 2222 244677778888777 77777777777765432221 111111 0
Q ss_pred -------------------CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhccCCChh
Q 039015 503 -------------------NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLTSSDSEE 562 (685)
Q Consensus 503 -------------------~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~ 562 (685)
.+|+=.++|.-|.++-.+++++|+..++.|+.... ...+ ++..|+.++ +++.+.
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMf-NDE~~~ 425 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMF-NDEIEV 425 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHh-ccHHHH
Confidence 14555677777777668999999999999987544 3332 467799999 788889
Q ss_pred HHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHH
Q 039015 563 LITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVA 626 (685)
Q Consensus 563 ~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~ 626 (685)
++..|.-.|..++.+-..++ .-++.+.+.|.+. ++.+++..-.+|.+ |.-.+.++..
T Consensus 426 VRL~ai~aL~~Is~~l~i~e-----eql~~il~~L~D~-s~dvRe~l~elL~~-~~~~d~~~i~ 482 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHLAIRE-----EQLRQILESLEDR-SVDVREALRELLKN-ARVSDLECID 482 (823)
T ss_pred HHHHHHHHHHHHHHHheecH-----HHHHHHHHHHHhc-CHHHHHHHHHHHHh-cCCCcHHHHH
Confidence 99999999999988733222 3356777778776 88888877766654 4443333333
No 152
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.0043 Score=60.75 Aligned_cols=54 Identities=17% Similarity=0.463 Sum_probs=46.8
Q ss_pred CCCccCcCccccCCCce----eccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcc
Q 039015 278 PDDFTCPISLEIMKDPV----TLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV 332 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv----~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~ 332 (685)
...|.||+|...+.+.+ .-+|||.||..|.++.+.. ...||+|+.++.++++++
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 36799999999999854 2389999999999998876 789999999999888766
No 153
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.92 E-value=0.047 Score=53.39 Aligned_cols=123 Identities=19% Similarity=0.188 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHhhccccCcchhHHHHh----------------cCcHHHHHHHhcCCC-----CHHHHHHHHHHHHHhc
Q 039015 433 KDSSTQENAIAALLNLSKHCKSKSMVVE----------------SGGLDFIVDMVKKGL-----KVEARQHAAATLFYIA 491 (685)
Q Consensus 433 ~~~~~~~~A~~aL~nLs~~~~~k~~i~~----------------~g~i~~Lv~lL~~~~-----~~e~~~~Aa~~L~~Ls 491 (685)
++......++.+|.||+..+.+...+.+ ..++..|+..+..|. ........+.++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 4455677888999999998888765542 236888888887731 3455678999999999
Q ss_pred CchhHHHHhhcCC-Cc--HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhc---CChHHHHHHh
Q 039015 492 SIEEYRKLIGENP-EA--IPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAA---GAVPLLLNLL 555 (685)
Q Consensus 492 ~~~~~~~~i~~~~-g~--i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~---G~v~~Lv~lL 555 (685)
..++.|..+.... +. +..|+..+.+.+.--+.-++.+|.|+|.+.+.+..+... +++|.|+--|
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 9999999997733 33 667777777777767778999999999999999888874 4555555544
No 154
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=0.23 Score=55.55 Aligned_cols=228 Identities=14% Similarity=0.134 Sum_probs=142.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
+..++.++..+.......+..++..|..+++. ..-.-.......||.+...|-+..+++++.+..+|.++..-.+|...
T Consensus 253 K~llpsll~~l~~~kWrtK~aslellg~m~~~-ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI 331 (569)
T KOG1242|consen 253 KLLLPSLLGSLLEAKWRTKMASLELLGAMADC-APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI 331 (569)
T ss_pred hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh-chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH
Confidence 33455556555444677888999999998874 34455666778999999999999999999999999999887777662
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc----CCHHHHHHHHHHHHHhc
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRD----GTDRSKKNALVAIFGLL 533 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs 533 (685)
.-.++.|+..+... +..+. .++..|.... .-..+ . .-.+..++.+|+. -+...++.++..+.|+|
T Consensus 332 ---~~~ip~Lld~l~dp-~~~~~----e~~~~L~~tt-FV~~V-~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 332 ---QKIIPTLLDALADP-SCYTP----ECLDSLGATT-FVAEV-D-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMC 400 (569)
T ss_pred ---HHHHHHHHHHhcCc-ccchH----HHHHhhccee-eeeee-c-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 22477788888766 22221 2223332211 11111 1 2345555555544 34667889999999999
Q ss_pred CCCCcHHHHHhc--CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHH
Q 039015 534 MHSGNHWRFLAA--GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVS 611 (685)
Q Consensus 534 ~~~~n~~~iv~~--G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~ 611 (685)
.--++...+..- -.+|.|-..+ .+..++++..+..+|.-+-..-..... .+.+|.+.+.++...+...+.-++.
T Consensus 401 ~LveDp~~lapfl~~Llp~lk~~~-~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~~~~~~g~aq 476 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLPSLLPGLKENL-DDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKSLVDRSGAAQ 476 (569)
T ss_pred HhhcCHHHHhhhHHHHhhHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchhhhhhHHHhh
Confidence 766554444321 1344444444 344688998888888766553222221 3446777776655434455555666
Q ss_pred HHHHHhccCc
Q 039015 612 LLLALCINGG 621 (685)
Q Consensus 612 ~L~~L~~~~~ 621 (685)
.|..++...+
T Consensus 477 ~l~evl~~~~ 486 (569)
T KOG1242|consen 477 DLSEVLAGLG 486 (569)
T ss_pred hHHHHHhccc
Confidence 6666665443
No 155
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.91 E-value=0.023 Score=49.30 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhh--cCCCHHHHHHHHHHhhccccCc-chhHHHHh
Q 039015 396 KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL--SSKDSSTQENAIAALLNLSKHC-KSKSMVVE 460 (685)
Q Consensus 396 ~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL--~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~ 460 (685)
+...++.|.+++..++.++..+.+.|+||.+++.- +..+|-+++.|+.++.||..+. +|+..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45667889999999999999999999999999854 4578999999999999999765 77888874
No 156
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.0026 Score=63.09 Aligned_cols=58 Identities=26% Similarity=0.480 Sum_probs=45.4
Q ss_pred CCCCCccCcCccccCCCce----------eccCcccccHHHHHHHHHcC-CCCCCCCCccccCCCCccc
Q 039015 276 LTPDDFTCPISLEIMKDPV----------TLSTGHTYDRASILKWFRAG-NSTCPKTGERLQSKELLVN 333 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv----------~~~cghtfcr~ci~~~~~~~-~~~CP~c~~~l~~~~l~~n 333 (685)
.-.++-.|.+|++-+.+.+ .++|+|.|...||.-|.--| ..+||.|++.+....+..|
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 4456789999998877665 56999999999999998755 5699999988765444444
No 157
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.86 E-value=0.23 Score=54.85 Aligned_cols=248 Identities=21% Similarity=0.204 Sum_probs=136.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH-
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV- 458 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i- 458 (685)
..++|-.+|++.-+-+..++++.+..++..+. -..+.+ -+|..|-.+|++.+...|-.|+++|..|+.-.+.+...
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 35677777777667788899999988887541 222222 34777888999999999999999999998654332221
Q ss_pred -------H-h---cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHH
Q 039015 459 -------V-E---SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALV 527 (685)
Q Consensus 459 -------~-~---~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~ 527 (685)
+ + .=..-+|..+|+.| +.+....-...+-++.. +-++..|..++.
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLKTG-t~e~idrLv~~I~sfvh-----------------------D~SD~FKiI~id 397 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLKTG-TEETIDRLVNLIPSFVH-----------------------DMSDGFKIIAID 397 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHHcC-chhhHHHHHHHHHHHHH-----------------------hhccCceEEeHH
Confidence 1 1 11233444555555 44444433333333322 111222222333
Q ss_pred HHHHhcCCCCcH---------HHHHhcCC-------hHHHHHHhccCCChhHHHHHHHHHHHHhcChh-cH--HHH----
Q 039015 528 AIFGLLMHSGNH---------WRFLAAGA-------VPLLLNLLTSSDSEELITDSLAVLATLAEKLD-GT--IAI---- 584 (685)
Q Consensus 528 aL~nLs~~~~n~---------~~iv~~G~-------v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~-~~--~~i---- 584 (685)
|+..||..-+.+ ..+.+.|+ |..+.+++. ..++.++.|+..|+..-.+-+ .+ ..|
T Consensus 398 a~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~--~~p~skEraLe~LC~fIEDcey~~I~vrIL~iL 475 (898)
T COG5240 398 ALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME--NDPDSKERALEVLCTFIEDCEYHQITVRILGIL 475 (898)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Confidence 333333211111 01122232 333444442 234555666655555433211 11 111
Q ss_pred HhcC------C--hHHHHH--HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHH
Q 039015 585 LHHG------A--LDMIMK--ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKAS 654 (685)
Q Consensus 585 ~~~g------~--v~~Lv~--lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~ 654 (685)
.+.| + +..+.. +|. +.-++..|+.+|...+.+-.+.+... .+...|...+.+.++.++..|.
T Consensus 476 G~EgP~a~~P~~yvrhIyNR~iLE---N~ivRsaAv~aLskf~ln~~d~~~~~-----sv~~~lkRclnD~DdeVRdrAs 547 (898)
T COG5240 476 GREGPRAKTPGKYVRHIYNRLILE---NNIVRSAAVQALSKFALNISDVVSPQ-----SVENALKRCLNDQDDEVRDRAS 547 (898)
T ss_pred cccCCCCCCcchHHHHHHHHHHHh---hhHHHHHHHHHHHHhccCccccccHH-----HHHHHHHHHhhcccHHHHHHHH
Confidence 1111 1 233333 232 45788889999988877654433222 2355788889999999999999
Q ss_pred HHHHHHHHhh
Q 039015 655 ALIRILHEFY 664 (685)
Q Consensus 655 ~lL~~l~~~~ 664 (685)
-+|+.++...
T Consensus 548 f~l~~~~~~d 557 (898)
T COG5240 548 FLLRNMRLSD 557 (898)
T ss_pred HHHHhhhhhh
Confidence 9999998644
No 158
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.83 E-value=0.0069 Score=62.46 Aligned_cols=55 Identities=16% Similarity=0.443 Sum_probs=43.3
Q ss_pred CCCCCccCcCccccCCCc---eec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcc
Q 039015 276 LTPDDFTCPISLEIMKDP---VTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV 332 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dP---v~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~ 332 (685)
.-...|.|||++..|..- |.+ +|||+|+..+|...- ....||.|+.++...++++
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 346679999999999542 333 999999999998873 2567999999998776554
No 159
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.73 E-value=0.018 Score=43.91 Aligned_cols=55 Identities=27% Similarity=0.189 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015 477 VEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGL 532 (685)
Q Consensus 477 ~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 532 (685)
+.+|..|+.+|.+++........-.. ..+++.|+.+|.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999998865533333333 56999999999998999999999999875
No 160
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.71 E-value=0.5 Score=48.87 Aligned_cols=226 Identities=14% Similarity=0.158 Sum_probs=155.9
Q ss_pred CCHHHHHHHHHHhhccccCcchhHHHH-hcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHH
Q 039015 433 KDSSTQENAIAALLNLSKHCKSKSMVV-ESGGLDFIVDMVKKGL-KVEARQHAAATLFYIASIEEYRKLIGENPEAIPAL 510 (685)
Q Consensus 433 ~~~~~~~~A~~aL~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~L 510 (685)
-++-++--|+.+|.+|....+-|..+- +..+-..+++++++.. ..+.+-+..-.++-|+..+++.+.|....+.|.-|
T Consensus 161 i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 161 IDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 355678889999999999888876665 6678888999998642 46888999999999999999887776655678888
Q ss_pred HHHhccCC-HHHHHHHHHHHHHhcCCC--CcHHHHHhcCChHHHHHHhccC--CChhHHHHHHHHHHHHhc---------
Q 039015 511 VDMVRDGT-DRSKKNALVAIFGLLMHS--GNHWRFLAAGAVPLLLNLLTSS--DSEELITDSLAVLATLAE--------- 576 (685)
Q Consensus 511 v~lL~~~~-~~~~~~A~~aL~nLs~~~--~n~~~iv~~G~v~~Lv~lL~~~--~~~~~~~~al~~L~~La~--------- 576 (685)
+.+++... ..+..-++..+.|++.-. +....+.-.|-+..-+++|... .+++++...-.+=..|..
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 88887643 556667888899988622 3445556667677777777432 233333222111111110
Q ss_pred -------------C---------hhcHHHHHhcC-C-hHHHHHHhhcCCChh-HHHHHHHHHHHHhccCcHHHHHHHHhc
Q 039015 577 -------------K---------LDGTIAILHHG-A-LDMIMKILDSCTSRA-GKEYCVSLLLALCINGGANVVALLVKS 631 (685)
Q Consensus 577 -------------~---------~~~~~~i~~~g-~-v~~Lv~lL~~~~s~~-~~e~a~~~L~~L~~~~~~~~~~~l~~~ 631 (685)
+ ..+...+.+.+ . +..|.++++.. .|. .-..|+.=+.++.+.. ++....+.+
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~-PE~~~vl~K- 397 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRAS-PEINAVLSK- 397 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhC-chHHHHHHH-
Confidence 1 12233333333 1 57777788765 444 4456777777777766 455677777
Q ss_pred CCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015 632 PSLMGSLYSLLSQGSSRASKKASALIRILH 661 (685)
Q Consensus 632 ~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 661 (685)
.|+-..+.+|+...++++|-.|-..++.+-
T Consensus 398 yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 398 YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 899999999999999999998888887764
No 161
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.69 E-value=0.15 Score=47.91 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=97.6
Q ss_pred hHHHhhCCHHHHHHhhcCCC------HHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHH
Q 039015 415 SCLVEVGCIPSLLKLLSSKD------SSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGL-KVEARQHAAATL 487 (685)
Q Consensus 415 ~~i~~~G~ip~Lv~lL~s~~------~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L 487 (685)
..|++.||++.|++++.++. .++...+++++.+|-.+..--....+...|..++....... +..+...|.+.|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45778899999999998755 47888899999999988765556778888999999998663 578889999999
Q ss_pred HHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 488 FYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 488 ~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
-++..+...........=-++.|+..|+.++++.+.+|+..|-.|-.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99988776644444435679999999999999999999888777754
No 162
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.53 E-value=0.66 Score=46.34 Aligned_cols=177 Identities=20% Similarity=0.136 Sum_probs=120.2
Q ss_pred HHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc----cCC-HHHHHHHHHHHHHhcCCCC--cHHHHHhcCChHHHH
Q 039015 480 RQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR----DGT-DRSKKNALVAIFGLLMHSG--NHWRFLAAGAVPLLL 552 (685)
Q Consensus 480 ~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~----~~~-~~~~~~A~~aL~nLs~~~~--n~~~iv~~G~v~~Lv 552 (685)
.-+|.+.|-.++++++-|..+.. ...--.|-..|. +.. +-.+-.++++|..|...++ ....+...++||..+
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~-A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLR-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHH-ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 45888888999999999988877 554334444443 222 4567799999999997665 556678899999999
Q ss_pred HHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcC----Ch----HHHHH-HhhcCCChhHHHHHHHHHHHHhccCcHH
Q 039015 553 NLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHG----AL----DMIMK-ILDSCTSRAGKEYCVSLLLALCINGGAN 623 (685)
Q Consensus 553 ~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g----~v----~~Lv~-lL~~~~s~~~~e~a~~~L~~L~~~~~~~ 623 (685)
+.+ ..+++.-+..|.-++..+-.++.|-.-+++.- +| ..++. +.+.+ +++.-.+.+.+..+|+.+ +.
T Consensus 175 rim-e~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p-s~RllKhviRcYlrLsdn--pr 250 (293)
T KOG3036|consen 175 RIM-ESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP-SPRLLKHVIRCYLRLSDN--PR 250 (293)
T ss_pred HHH-hcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCC--HH
Confidence 999 55667778889999999988888877665433 12 33333 44455 999999999999999988 67
Q ss_pred HHHHHHhc--CCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015 624 VVALLVKS--PSLMGSLYSLLSQGSSRASKKASALIRILH 661 (685)
Q Consensus 624 ~~~~l~~~--~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 661 (685)
++..+..- .++...=...+-..++..|+--+.+++.+.
T Consensus 251 ar~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 251 ARAALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHHHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 77766530 011111112222234455666666666543
No 163
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.45 E-value=0.068 Score=46.43 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHH--HhhcCCChhHHHHHHHHHHHHhccCcH
Q 039015 563 LITDSLAVLATLAE-KLDGTIAILHHGALDMIMK--ILDSCTSRAGKEYCVSLLLALCINGGA 622 (685)
Q Consensus 563 ~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~--lL~~~~s~~~~e~a~~~L~~L~~~~~~ 622 (685)
++...+.+|+||+. ++..+..+.+.||+|.++. .+... +|-.+|.|+.++.+||.++.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~-nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDH-NPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcc-cHHHHHHHHHHHHHHHhCCHH
Confidence 35567889999987 5889999999999999998 34445 999999999999999998754
No 164
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.008 Score=63.54 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=41.4
Q ss_pred CCCCccCcCccccCCCce-----e---ccCcccccHHHHHHHHHcC------CCCCCCCCcccc
Q 039015 277 TPDDFTCPISLEIMKDPV-----T---LSTGHTYDRASILKWFRAG------NSTCPKTGERLQ 326 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~dPv-----~---~~cghtfcr~ci~~~~~~~------~~~CP~c~~~l~ 326 (685)
.-.+..|.||++...+++ . .+|.|+||..||.+|-... .+.||.||....
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 356899999999999887 3 4699999999999998542 478999998764
No 165
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.62 Score=53.36 Aligned_cols=239 Identities=16% Similarity=0.126 Sum_probs=147.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhcCCchh---------------hHHHh---hCCHHHHHHhhcCCC-------HHHH
Q 039015 384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFNR---------------SCLVE---VGCIPSLLKLLSSKD-------SSTQ 438 (685)
Q Consensus 384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r---------------~~i~~---~G~ip~Lv~lL~s~~-------~~~~ 438 (685)
-+..++|+++++..++++-...++.+.-+-- ..+.+ .+.+|.|+.+|...| -...
T Consensus 264 tl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~ 343 (859)
T KOG1241|consen 264 TLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPA 343 (859)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHH
Confidence 3455678888888888877776664322210 11111 267888998886521 1344
Q ss_pred HHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCC
Q 039015 439 ENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT 518 (685)
Q Consensus 439 ~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 518 (685)
..|-.+|.-++..- +..|+. -+++.+-+-++++ ++.-++.|+-++.+.-..++-...-.-..+++|.++.++.+.+
T Consensus 344 kAAg~CL~l~A~~~--~D~Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s 419 (859)
T KOG1241|consen 344 KAAGVCLMLFAQCV--GDDIVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS 419 (859)
T ss_pred HHHHHHHHHHHHHh--cccchh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch
Confidence 44444444433211 223333 4555565667777 8899999999988887766433222222689999999999877
Q ss_pred HHHHHHHHHHHHHhcCCCC--cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC--hhc----HHHHHhcCCh
Q 039015 519 DRSKKNALVAIFGLLMHSG--NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK--LDG----TIAILHHGAL 590 (685)
Q Consensus 519 ~~~~~~A~~aL~nLs~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~--~~~----~~~i~~~g~v 590 (685)
.-++..++++|..++..-. .-....-.+.++.|+.=|. +.+.+..++.+++.+|+.. +.. ...... ...
T Consensus 420 l~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~--DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y 496 (859)
T KOG1241|consen 420 LWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN--DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFY 496 (859)
T ss_pred hhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh--hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhH
Confidence 8888899999999985432 2222334556677777662 4578889999999999852 111 111211 123
Q ss_pred HHHHH-Hhhc-----CCChhHHHHHHHHHHHHhccCcHHHHHHHH
Q 039015 591 DMIMK-ILDS-----CTSRAGKEYCVSLLLALCINGGANVVALLV 629 (685)
Q Consensus 591 ~~Lv~-lL~~-----~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~ 629 (685)
+.++. +++. |+....+-.|-.+|..+..++++.+-..++
T Consensus 497 ~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~ 541 (859)
T KOG1241|consen 497 EAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ 541 (859)
T ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 44444 5542 223456667888999998888766554443
No 166
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.42 E-value=0.55 Score=49.74 Aligned_cols=184 Identities=26% Similarity=0.257 Sum_probs=106.0
Q ss_pred hcCCCHHHHHHHHHHhhccccCcchhHHHH--hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc---hhHHHHhhcCC
Q 039015 430 LSSKDSSTQENAIAALLNLSKHCKSKSMVV--ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI---EEYRKLIGENP 504 (685)
Q Consensus 430 L~s~~~~~~~~A~~aL~nLs~~~~~k~~i~--~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~---~~~~~~i~~~~ 504 (685)
|.......++.|+..|.++-...---..+. ....+..+.+.+++| ..+.+..|+.++.-|+.. .+....+.+
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-- 128 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDSEEIFE-- 128 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccHHHHHH--
Confidence 444456677777777766654433333333 234688899999999 667777777777666554 123334432
Q ss_pred CcHHHHHHHhccCC--HHHHHHHHHHHHHhcCCCCc-HHHHHh-cCChHH--HHHHhccC---------CChhHHHHHHH
Q 039015 505 EAIPALVDMVRDGT--DRSKKNALVAIFGLLMHSGN-HWRFLA-AGAVPL--LLNLLTSS---------DSEELITDSLA 569 (685)
Q Consensus 505 g~i~~Lv~lL~~~~--~~~~~~A~~aL~nLs~~~~n-~~~iv~-~G~v~~--Lv~lL~~~---------~~~~~~~~al~ 569 (685)
...|.|...+.+++ +..+..++.+|.-++....+ -..+.+ ...+.. .+..+..+ +++.+...|+.
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 47889999988765 34555666676666543221 111110 011221 11112112 13467777777
Q ss_pred HHHHHhcC-hhcH-HHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015 570 VLATLAEK-LDGT-IAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI 618 (685)
Q Consensus 570 ~L~~La~~-~~~~-~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~ 618 (685)
.-..|... +... .... ...+|.|+.+|.+. +..++-.|-.+|.-|..
T Consensus 209 aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 77777654 3321 2222 23589999999987 88888877777666654
No 167
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=3.8 Score=47.28 Aligned_cols=274 Identities=13% Similarity=0.109 Sum_probs=157.3
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHHhhcC--CCHHHHHHHHHHhhcccc----
Q 039015 379 LLANFISDRLLEGTS-EEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLKLLSS--KDSSTQENAIAALLNLSK---- 450 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~-~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~---- 450 (685)
+.+..|+........ ..+..++.+|..+|. +..-....... .++..++.-... ++..++..|+.+|.|--.
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice-~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICE-DIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHc-cCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 356677776654443 478899999999996 33333222222 455666654433 577899999999976521
Q ss_pred ---CcchhHHHH--------------hcCcHHHHHHHh-----------------------cCCCCHHHHHHHHHHHHHh
Q 039015 451 ---HCKSKSMVV--------------ESGGLDFIVDMV-----------------------KKGLKVEARQHAAATLFYI 490 (685)
Q Consensus 451 ---~~~~k~~i~--------------~~g~i~~Lv~lL-----------------------~~~~~~e~~~~Aa~~L~~L 490 (685)
++.+|..|+ ...++..|++++ ++. ++++...++..-.+.
T Consensus 208 nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~-~deValQaiEFWsti 286 (859)
T KOG1241|consen 208 NFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSD-NDEVALQAIEFWSTI 286 (859)
T ss_pred hhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHH
Confidence 222244332 112233333332 334 566666665555545
Q ss_pred cCch-hHHHHhh------c-----------CCCcHHHHHHHhcc--CC-----HHHHHHHHHHHHHhcCCCCcHHHHHhc
Q 039015 491 ASIE-EYRKLIG------E-----------NPEAIPALVDMVRD--GT-----DRSKKNALVAIFGLLMHSGNHWRFLAA 545 (685)
Q Consensus 491 s~~~-~~~~~i~------~-----------~~g~i~~Lv~lL~~--~~-----~~~~~~A~~aL~nLs~~~~n~~~iv~~ 545 (685)
+... +....++ . -.+.+|.|+++|.. ++ -..-+.|-.+|.-++. .+..
T Consensus 287 ceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-------~~~D 359 (859)
T KOG1241|consen 287 CEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGD 359 (859)
T ss_pred HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-------Hhcc
Confidence 4322 2111111 1 12678889998853 21 1334555556655433 2334
Q ss_pred CChHHHHHHhc---cCCChhHHHHHHHHHHHHhcChhcH-HHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCc
Q 039015 546 GAVPLLLNLLT---SSDSEELITDSLAVLATLAEKLDGT-IAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGG 621 (685)
Q Consensus 546 G~v~~Lv~lL~---~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~ 621 (685)
.+|++.+..+. ..++-.-++.|+.++..+-..++.. ..=...+++|.++.++.+. +-.+++.+++.|..+|...+
T Consensus 360 ~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhch
Confidence 45555555553 3556667788888888776654432 2234557899999999876 88999999999999998875
Q ss_pred HHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015 622 ANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 622 ~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 664 (685)
+.+...... .+.++.|..-+.+ .++...++.|.+-.|.+..
T Consensus 439 e~~~n~~~l-~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~ 479 (859)
T KOG1241|consen 439 EAIINQELL-QSKLSALLEGLND-EPRVASNVCWAFISLAEAA 479 (859)
T ss_pred hhcccHhhh-hHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHH
Confidence 443332222 2333444443333 4666666666666666543
No 168
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.38 E-value=1.4 Score=50.32 Aligned_cols=277 Identities=12% Similarity=0.110 Sum_probs=154.8
Q ss_pred hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--------CCHHHHHHHHHHhhc
Q 039015 376 AMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--------KDSSTQENAIAALLN 447 (685)
Q Consensus 376 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--------~~~~~~~~A~~aL~n 447 (685)
.++...-.+++...|.+++.+.-.++.+...|..+ ..-........+|.+....-. ....+...++.+-..
T Consensus 633 yTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~-Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~K 711 (1172)
T KOG0213|consen 633 YTREVMLILIREFGSPDEEMKKIVLKVVKQCCATD-GVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAK 711 (1172)
T ss_pred hHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhccc-CCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHH
Confidence 34445667777788889999988888888888643 333344444556665543322 112333333333222
Q ss_pred cccC------------cchhHHHHhcCcHHHHHHHhcCCCCHHH--HHH-HHHHHHHhcCch-h----------HHHHhh
Q 039015 448 LSKH------------CKSKSMVVESGGLDFIVDMVKKGLKVEA--RQH-AAATLFYIASIE-E----------YRKLIG 501 (685)
Q Consensus 448 Ls~~------------~~~k~~i~~~g~i~~Lv~lL~~~~~~e~--~~~-Aa~~L~~Ls~~~-~----------~~~~i~ 501 (685)
+-.+ +...-+-+..+.+..++..|... +.+. -+. -=++|+.+.... + ....++
T Consensus 712 vG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~-diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg 790 (1172)
T KOG0213|consen 712 VGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAA-DIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALG 790 (1172)
T ss_pred hCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccc-cccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 2111 11111112345566666665533 1111 111 122223332221 1 011111
Q ss_pred c-----CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH---HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 039015 502 E-----NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH---WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLAT 573 (685)
Q Consensus 502 ~-----~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~---~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~ 573 (685)
. .+..+...+..|.+.++.++..|+..+..|+.--.++ ..+...|+| |.+.| ....+++.-..++++..
T Consensus 791 ~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEyl-geeypEvLgsILgAika 867 (1172)
T KOG0213|consen 791 GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYL-GEEYPEVLGSILGAIKA 867 (1172)
T ss_pred hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhc-CcccHHHHHHHHHHHHH
Confidence 1 1224556667788899999999999988887433333 223334443 66777 56678888877777777
Q ss_pred HhcChhcHHHH-HhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHH--HHHHHHhcCCcHHHHHHHHhcCChHHH
Q 039015 574 LAEKLDGTIAI-LHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGAN--VVALLVKSPSLMGSLYSLLSQGSSRAS 650 (685)
Q Consensus 574 La~~~~~~~~i-~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~--~~~~l~~~~g~i~~L~~Ll~~g~~~~k 650 (685)
+...-..-... =-.+.+|.|.-+|++. ...++++++..+..+|.++++. +++-|.- -=-|++++.+....++
T Consensus 868 I~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRI----cfeLlelLkahkK~iR 942 (1172)
T KOG0213|consen 868 IVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRI----CFELLELLKAHKKEIR 942 (1172)
T ss_pred HHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 76532111111 0123489999999987 8899999999999999988653 2222221 1246777777777777
Q ss_pred HHHHHHHHHHHH
Q 039015 651 KKASALIRILHE 662 (685)
Q Consensus 651 ~~A~~lL~~l~~ 662 (685)
+.|...+-.+.+
T Consensus 943 Raa~nTfG~Iak 954 (1172)
T KOG0213|consen 943 RAAVNTFGYIAK 954 (1172)
T ss_pred HHHHhhhhHHHH
Confidence 777655544443
No 169
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.38 E-value=0.019 Score=42.81 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=32.1
Q ss_pred cCcCccc--cCCCceeccCc-----ccccHHHHHHHHHc-CCCCCCCCC
Q 039015 282 TCPISLE--IMKDPVTLSTG-----HTYDRASILKWFRA-GNSTCPKTG 322 (685)
Q Consensus 282 ~CpIc~~--~m~dPv~~~cg-----htfcr~ci~~~~~~-~~~~CP~c~ 322 (685)
.|-||++ .-.+|.+.||. +.+.+.|+.+|+.. +..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4788886 44567778875 67899999999975 366899985
No 170
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.0085 Score=64.21 Aligned_cols=51 Identities=18% Similarity=0.389 Sum_probs=40.3
Q ss_pred CCCCccCcCccccCC-----------------CceeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 277 TPDDFTCPISLEIMK-----------------DPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~-----------------dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
....-.|+||+.... +-+.+||.|.|.+.|+++|.+.-.-.||.|+.+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 556678999986543 123459999999999999999646699999998863
No 171
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.0086 Score=62.96 Aligned_cols=60 Identities=23% Similarity=0.495 Sum_probs=48.6
Q ss_pred CccCcCccccCCCce-----eccCcccccHHHHHHHHHc-CCCCCCCCCccccCCCCcccHHHHhh
Q 039015 280 DFTCPISLEIMKDPV-----TLSTGHTYDRASILKWFRA-GNSTCPKTGERLQSKELLVNLVLKRI 339 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv-----~~~cghtfcr~ci~~~~~~-~~~~CP~c~~~l~~~~l~~n~~l~~~ 339 (685)
.-+||||++-+.-|+ ++.|||-|-..||++|+.. ....||.|...-..+++.+-+.++..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 468999999988774 4589999999999999963 24579999888877788887777644
No 172
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.26 E-value=0.61 Score=47.32 Aligned_cols=143 Identities=20% Similarity=0.215 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHh-cCchhHHHHhhcCCCcHHHHHHHhc-------cCC--H---HHHHHHHHHHHHhcCCCCcHHHH
Q 039015 476 KVEARQHAAATLFYI-ASIEEYRKLIGENPEAIPALVDMVR-------DGT--D---RSKKNALVAIFGLLMHSGNHWRF 542 (685)
Q Consensus 476 ~~e~~~~Aa~~L~~L-s~~~~~~~~i~~~~g~i~~Lv~lL~-------~~~--~---~~~~~A~~aL~nLs~~~~n~~~i 542 (685)
+++.|++|..-|..- ...++....+....|.+..|++=+- .++ . .-.-+|+..|..++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 578888887666544 3345666677776788888876332 221 1 22347888888999999999999
Q ss_pred HhcCChHHHHHHhccCC----ChhHHHHHHHHHHHHhcC--hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015 543 LAAGAVPLLLNLLTSSD----SEELITDSLAVLATLAEK--LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL 616 (685)
Q Consensus 543 v~~G~v~~Lv~lL~~~~----~~~~~~~al~~L~~La~~--~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L 616 (685)
+++.+.-.|.-.|.... -+.++-.++++++.|.+. ++...-+.+.+.+|..++.|..| +...|-.|.-++..+
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKI 166 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKI 166 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHH
Confidence 99999888888885322 267788899999999884 44555567777799999999999 999999999998877
Q ss_pred hcc
Q 039015 617 CIN 619 (685)
Q Consensus 617 ~~~ 619 (685)
-.+
T Consensus 167 L~d 169 (262)
T PF04078_consen 167 LLD 169 (262)
T ss_dssp HHS
T ss_pred Hcc
Confidence 654
No 173
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.014 Score=61.71 Aligned_cols=50 Identities=24% Similarity=0.447 Sum_probs=42.0
Q ss_pred CCCCCccCcCccccCCC---ceeccCcccccHHHHHHHHHcCC--CCCCCCCccc
Q 039015 276 LTPDDFTCPISLEIMKD---PVTLSTGHTYDRASILKWFRAGN--STCPKTGERL 325 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~d---Pv~~~cghtfcr~ci~~~~~~~~--~~CP~c~~~l 325 (685)
....-|.|||..+--.| |+.+.|||..++..+.+....|. +.||.|....
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred cccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 34556899999877664 89999999999999999999887 8999996543
No 174
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.17 Score=56.75 Aligned_cols=106 Identities=21% Similarity=0.264 Sum_probs=77.7
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
..|+..|+-.++|+-|... -.|+|..|++.+..|+.+. ... ..++..|++++.++...++..|+.+|..++.
T Consensus 367 ~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA------~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~ 439 (823)
T KOG2259|consen 367 ESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFA------VRALDFLVDMFNDEIEVVRLKAIFALTMISV 439 (823)
T ss_pred cccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888877 7899999999999998754 322 2368999999988888999999999999887
Q ss_pred CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH
Q 039015 535 HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATL 574 (685)
Q Consensus 535 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L 574 (685)
+-. ++..-++.+...| .+.+.++++..-.+|.+.
T Consensus 440 ~l~-----i~eeql~~il~~L-~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 440 HLA-----IREEQLRQILESL-EDRSVDVREALRELLKNA 473 (823)
T ss_pred Hhe-----ecHHHHHHHHHHH-HhcCHHHHHHHHHHHHhc
Confidence 632 3334455666666 455666666655555544
No 175
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.11 E-value=0.021 Score=45.99 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=35.6
Q ss_pred CCccCcCccccCCC----ceec-cCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 279 DDFTCPISLEIMKD----PVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 279 ~~~~CpIc~~~m~d----Pv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
-.-.||-|..-|.. |+.. .|.|.|.-.||.+|+.. ...||.+++...
T Consensus 30 im~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 30 IMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred ccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 34567777765521 3333 69999999999999998 789999998753
No 176
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.08 E-value=0.054 Score=41.24 Aligned_cols=55 Identities=18% Similarity=0.117 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 039015 435 SSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYI 490 (685)
Q Consensus 435 ~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L 490 (685)
+.++..|+++|.+++........-....+++.|+.+|+++ +.++|.+|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 3678999999999887776655556788999999999888 889999999999765
No 177
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.04 E-value=0.55 Score=51.86 Aligned_cols=163 Identities=13% Similarity=0.169 Sum_probs=114.8
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCH----HHHHHHHHHHHHhcCCCCc
Q 039015 463 GLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTD----RSKKNALVAIFGLLMHSGN 538 (685)
Q Consensus 463 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~----~~~~~A~~aL~nLs~~~~n 538 (685)
....+.+++.+| +...+..|...|.+|+.+......+.. ..++..|..++.+|+. ......+.|+..|-.+.-.
T Consensus 84 ~a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv 161 (713)
T KOG2999|consen 84 YAKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV 161 (713)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence 355677888999 899998999999999999998888888 7889999999998864 4555666666665433322
Q ss_pred HHHHHhcCChHHHHHHhc-cCCChhHHHHHHHHHHHHhcChhcHHH-HHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015 539 HWRFLAAGAVPLLLNLLT-SSDSEELITDSLAVLATLAEKLDGTIA-ILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL 616 (685)
Q Consensus 539 ~~~iv~~G~v~~Lv~lL~-~~~~~~~~~~al~~L~~La~~~~~~~~-i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L 616 (685)
-...+....|.....+.. .-.+..+...|+.+|.++..+...... |.+.--+..|+..+..+ +......|++.+-.+
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~-n~~i~~~aial~nal 240 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS-NQRIQTCAIALLNAL 240 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc-chHHHHHHHHHHHHH
Confidence 222222233333333331 123456678899999999887665554 44444599999988887 778888899999888
Q ss_pred hccCcHHHHHHH
Q 039015 617 CINGGANVVALL 628 (685)
Q Consensus 617 ~~~~~~~~~~~l 628 (685)
....++.-+..+
T Consensus 241 ~~~a~~~~R~~~ 252 (713)
T KOG2999|consen 241 FRKAPDDKRFEM 252 (713)
T ss_pred HhhCChHHHHHH
Confidence 876655443333
No 178
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.94 E-value=0.5 Score=53.82 Aligned_cols=215 Identities=19% Similarity=0.175 Sum_probs=135.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc---hhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF---NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~---~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
..++.|...|++..+.++.+.+..+..+|...++ .|+|+.-. =-|+.+|.+.+.+++.+|+..+..++.
T Consensus 883 dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIc---feLlelLkahkK~iRRaa~nTfG~Iak----- 954 (1172)
T KOG0213|consen 883 DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC---FELLELLKAHKKEIRRAAVNTFGYIAK----- 954 (1172)
T ss_pred hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHH-----
Confidence 4578888888888899999999999999987765 46665532 246778888899999999999887763
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH 535 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 535 (685)
.-|--+.|..+|++= ..+.|.+-+.+-..++...+.+..+ .++|+|+.=-..+...++.-.+.+|.-+-.+
T Consensus 955 ----aIGPqdVLatLlnnL-kvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~Fey 1025 (1172)
T KOG0213|consen 955 ----AIGPQDVLATLLNNL-KVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEY 1025 (1172)
T ss_pred ----hcCHHHHHHHHHhcc-hHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHH
Confidence 124445555555543 4455555444444444444444333 2466666655555666666667777666544
Q ss_pred CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhc------CCChhHHHHH
Q 039015 536 SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDS------CTSRAGKEYC 609 (685)
Q Consensus 536 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~------~~s~~~~e~a 609 (685)
-.+-.+=.-.-+.|.|-..| .+.+..-+.-|+.++.+|+-+..| .|....++.+|+- .++|.+...-
T Consensus 1026 igemskdYiyav~PlleDAl-mDrD~vhRqta~~~I~Hl~Lg~~g------~g~eda~iHLLN~iWpNIle~sPhviqa~ 1098 (1172)
T KOG0213|consen 1026 IGEMSKDYIYAVTPLLEDAL-MDRDLVHRQTAMNVIKHLALGVPG------TGCEDALIHLLNLIWPNILETSPHVIQAF 1098 (1172)
T ss_pred HHHHhhhHHHHhhHHHHHhh-ccccHHHHHHHHHHHHHHhcCCCC------cCcHHHHHHHHHHhhhhhcCCChHHHHHH
Confidence 33222212223567777777 667777778899999999876442 2334445554441 1267777666
Q ss_pred HHHHHHHh
Q 039015 610 VSLLLALC 617 (685)
Q Consensus 610 ~~~L~~L~ 617 (685)
..++-.+.
T Consensus 1099 ~e~~eg~r 1106 (1172)
T KOG0213|consen 1099 DEAMEGLR 1106 (1172)
T ss_pred HHHHHHHH
Confidence 65554444
No 179
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.93 E-value=0.35 Score=56.96 Aligned_cols=193 Identities=15% Similarity=0.129 Sum_probs=137.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHH--HhcCCCCcHHH
Q 039015 464 LDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF--GLLMHSGNHWR 541 (685)
Q Consensus 464 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~--nLs~~~~n~~~ 541 (685)
+|.++++|-+. --|..|...|...-.-..-..-+.-.-|++|..++||++...+.+. .+..|| -|+.++..+..
T Consensus 474 LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrp-iLVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 474 LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRP-ILVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhh-hHHHHHHHHHhcCchhHHH
Confidence 34444554332 2344555555544443333444444469999999999997776664 444444 25677778888
Q ss_pred HHhcCChHHHHHHhccCC--ChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015 542 FLAAGAVPLLLNLLTSSD--SEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI 618 (685)
Q Consensus 542 iv~~G~v~~Lv~lL~~~~--~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~ 618 (685)
+++.++-...++.|..+. +++-+..|+-+|+.++.+ +-|+.+.++.+-+...++.|.+++.+-.+.-++-+|..|=.
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~ 629 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE 629 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Confidence 999999888898884322 346667788888888775 77888888877788778888875357888888888888887
Q ss_pred cCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015 619 NGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE 662 (685)
Q Consensus 619 ~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 662 (685)
+.+.. +-.....++.+.|+.++.+.-+.++..|.-.|..|-.
T Consensus 630 d~~~A--rw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 630 DYDEA--RWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred hcchh--hhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 75443 3333336889999999999999999999988888765
No 180
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.034 Score=57.24 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=41.8
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
.++-.||||.---...|+.||||.-|..||.+++-. ...|-.|+..+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 467899999988888999999999999999999987 678888876554
No 181
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.81 E-value=1.5 Score=46.81 Aligned_cols=220 Identities=17% Similarity=0.145 Sum_probs=158.5
Q ss_pred HHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc-hhH-----HHHh--cCcHHHHHHHhcCCCCHHHHHHHHHHH
Q 039015 416 CLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK-SKS-----MVVE--SGGLDFIVDMVKKGLKVEARQHAAATL 487 (685)
Q Consensus 416 ~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~-~k~-----~i~~--~g~i~~Lv~lL~~~~~~e~~~~Aa~~L 487 (685)
.+...|.++.|+..|..-+-+.+..++.+..++-.... ++. .+.. ...+..|+.--. +++.-..+...|
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~ml 147 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDML 147 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHHH
Confidence 45567999999999999999999999999999976653 232 2221 233333333332 567888899999
Q ss_pred HHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhcC---ChHHHHHHhccCCChhH
Q 039015 488 FYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM-HSGNHWRFLAAG---AVPLLLNLLTSSDSEEL 563 (685)
Q Consensus 488 ~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G---~v~~Lv~lL~~~~~~~~ 563 (685)
.....++.....|-. ...+..+.+.++.++-++-.+|..++.-|-. +........... .+.....+| .+++=-.
T Consensus 148 Rec~k~e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll-~s~NYvt 225 (335)
T PF08569_consen 148 RECIKHESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL-ESSNYVT 225 (335)
T ss_dssp HHHTTSHHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC-T-SSHHH
T ss_pred HHHHhhHHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc-cCCCeEe
Confidence 999999887888877 7888899999999999999999999988654 444555555543 355667777 5667778
Q ss_pred HHHHHHHHHHHhcChhcHHHH---HhcCC-hHHHHHHhhcCCChhHHHHHHHHHHHHhccC--cHHHHHHHHhcCCcHHH
Q 039015 564 ITDSLAVLATLAEKLDGTIAI---LHHGA-LDMIMKILDSCTSRAGKEYCVSLLLALCING--GANVVALLVKSPSLMGS 637 (685)
Q Consensus 564 ~~~al~~L~~La~~~~~~~~i---~~~g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~--~~~~~~~l~~~~g~i~~ 637 (685)
+..++.+|..|-.++.+...+ +.... +..++.+|++. +..++-.|.-+.--...+. ++.+...+.+ . -..
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~-N--r~k 301 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDILIK-N--REK 301 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHHHH-T--HHH
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHHHHH-H--HHH
Confidence 899999999999988887654 33333 88888899997 9999999999987777654 4667777776 3 566
Q ss_pred HHHHHhc
Q 039015 638 LYSLLSQ 644 (685)
Q Consensus 638 L~~Ll~~ 644 (685)
|+.++.+
T Consensus 302 Ll~fl~~ 308 (335)
T PF08569_consen 302 LLRFLKD 308 (335)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777755
No 182
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.76 E-value=0.84 Score=49.65 Aligned_cols=126 Identities=17% Similarity=0.283 Sum_probs=96.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCchh----HHHHhhcCCCcHHHHHHHhccCC------H-HHHHHHHHHHHHhcCCC
Q 039015 468 VDMVKKGLKVEARQHAAATLFYIASIEE----YRKLIGENPEAIPALVDMVRDGT------D-RSKKNALVAIFGLLMHS 536 (685)
Q Consensus 468 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~lL~~~~------~-~~~~~A~~aL~nLs~~~ 536 (685)
..+++.. +.+.+-.|.-.+..+..+++ +|..+.+ .=+++.+=++|..++ + -.+..++..|...|..+
T Consensus 17 ~~L~~~k-~D~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 17 LKLLKGK-RDEERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHhccc-ChHHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 3344444 67777777777777877664 5666777 666888999987532 2 34567888899999888
Q ss_pred C--cHHHHHhcCChHHHHHHhccCCChh------HHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHh
Q 039015 537 G--NHWRFLAAGAVPLLLNLLTSSDSEE------LITDSLAVLATLAEKLDGTIAILHHGALDMIMKIL 597 (685)
Q Consensus 537 ~--n~~~iv~~G~v~~Lv~lL~~~~~~~------~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL 597 (685)
+ .+..+++. ||.|..++....+++ +.+.+-.+|..+|+++.|...++..|+++.+.++-
T Consensus 95 ElAsh~~~v~~--IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y 161 (698)
T KOG2611|consen 95 ELASHEEMVSR--IPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMY 161 (698)
T ss_pred hhccCHHHHHh--hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHH
Confidence 7 66777765 999999996444444 88999999999999999999999999999998843
No 183
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.68 E-value=0.29 Score=47.94 Aligned_cols=122 Identities=15% Similarity=0.134 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHhc----------------CChHHHHHHhcc-----CCChhHHHHHHHHHHHHhcC
Q 039015 519 DRSKKNALVAIFGLLMHSGNHWRFLAA----------------GAVPLLLNLLTS-----SDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 519 ~~~~~~A~~aL~nLs~~~~n~~~iv~~----------------G~v~~Lv~lL~~-----~~~~~~~~~al~~L~~La~~ 577 (685)
......++..|.||+..++.+..+++. .++..|+..+.. .....-.+....+|.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 334456777888888877776655443 256777887744 12355668899999999999
Q ss_pred hhcHHHHHhcC--C--hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhc--CCcHHHHHHHHh
Q 039015 578 LDGTIAILHHG--A--LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKS--PSLMGSLYSLLS 643 (685)
Q Consensus 578 ~~~~~~i~~~g--~--v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~--~g~i~~L~~Ll~ 643 (685)
++||..+++.. . +..|+.++.+. |..-+.-++++|.|+|...+ ....+... .+++|.|+.-+.
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~--~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTD--SHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHh--HHHHhcCchhhhhHHHHHhhcc
Confidence 99999997765 2 56677777776 88888899999999998843 33555542 367777777776
No 184
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.022 Score=57.57 Aligned_cols=49 Identities=20% Similarity=0.412 Sum_probs=39.3
Q ss_pred cCcCcc-ccCCCcee----ccCcccccHHHHHHHHHcCCCCCCCCCccccCCCC
Q 039015 282 TCPISL-EIMKDPVT----LSTGHTYDRASILKWFRAGNSTCPKTGERLQSKEL 330 (685)
Q Consensus 282 ~CpIc~-~~m~dPv~----~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l 330 (685)
.||+|. ..+..|-+ -+|||+.|.+|+...|..|...||-|+..+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 589987 45556632 28999999999999999999999999888765433
No 185
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.65 E-value=3.1 Score=49.39 Aligned_cols=241 Identities=17% Similarity=0.155 Sum_probs=143.0
Q ss_pred HHHhhCCHHHHHHhhcC-----CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhc----CCCC----HHHHHH
Q 039015 416 CLVEVGCIPSLLKLLSS-----KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVK----KGLK----VEARQH 482 (685)
Q Consensus 416 ~i~~~G~ip~Lv~lL~s-----~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~----~~~~----~e~~~~ 482 (685)
.+.+.|++..|+.+|.+ .+.......+.+|...++-..||..+.+.|+++.|++.|. .+ . .+.-+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~-~~~~~~~i~E~ 190 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQAN-QNSSQAEIAEQ 190 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCc-cccccchHHHH
Confidence 35668999999999976 3456667777888888888999999999999999999985 22 2 445555
Q ss_pred HHHHHHHhcCch---hHHHHhh--c-------CCCcHHHHHHHhccC----CHHHHHHHHHHHHHhcCCCCcHHHHHhcC
Q 039015 483 AAATLFYIASIE---EYRKLIG--E-------NPEAIPALVDMVRDG----TDRSKKNALVAIFGLLMHSGNHWRFLAAG 546 (685)
Q Consensus 483 Aa~~L~~Ls~~~---~~~~~i~--~-------~~g~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~n~~~iv~~G 546 (685)
...++-.|.... ....... . ...-+..|++.+.++ ++......+..|-+|+........++-.-
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 555554443222 1111111 1 112366777766543 46777778888888887766554332111
Q ss_pred ChHHHHHHhc--cCCChhHHHHHHHHHHHHhc----Ch---hcHHHHHhcCChHHHHHHhhcC-------CChhHHH---
Q 039015 547 AVPLLLNLLT--SSDSEELITDSLAVLATLAE----KL---DGTIAILHHGALDMIMKILDSC-------TSRAGKE--- 607 (685)
Q Consensus 547 ~v~~Lv~lL~--~~~~~~~~~~al~~L~~La~----~~---~~~~~i~~~g~v~~Lv~lL~~~-------~s~~~~e--- 607 (685)
+.+.+++=. ....++- ..-+..++.++. +. .-+..|++.|.+...+..|... .++++++
T Consensus 271 -F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 271 -FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred -HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 111112110 0111110 122444444433 33 3466789999898888854422 1455555
Q ss_pred -----HHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHHH
Q 039015 608 -----YCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSRASKKASALIRILHE 662 (685)
Q Consensus 608 -----~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~k~~A~~lL~~l~~ 662 (685)
.++.+|..||.+. ...+.+.. .++++.|..|=+.. +.++-..|..+|..|..
T Consensus 349 ~psLp~iL~lL~GLa~gh--~~tQ~~~~-~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGH--EPTQLLIA-EQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CCcHHHHHHHHHHHHhcC--HHHHHHHH-hhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 5888999999874 32334443 55677777776555 34455566666666655
No 186
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.62 E-value=0.014 Score=66.97 Aligned_cols=51 Identities=20% Similarity=0.526 Sum_probs=39.8
Q ss_pred CCCCCccCcCccccCC--C---ceec--cCcccccHHHHHHHHHc-CCCCCCCCCcccc
Q 039015 276 LTPDDFTCPISLEIMK--D---PVTL--STGHTYDRASILKWFRA-GNSTCPKTGERLQ 326 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~--d---Pv~~--~cghtfcr~ci~~~~~~-~~~~CP~c~~~l~ 326 (685)
.+...-.|+||..++. | |--. .|.|.|...|+.+||.. +..+||.||..++
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4566678999998876 3 2222 48899999999999985 5779999997654
No 187
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.54 E-value=0.59 Score=52.22 Aligned_cols=147 Identities=17% Similarity=0.226 Sum_probs=99.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhccccCcch---hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHH
Q 039015 423 IPSLLKLLSSKDSSTQENAIAALLNLSKHCKS---KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKL 499 (685)
Q Consensus 423 ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~---k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 499 (685)
|..++.+|.++.+.++..|+.....|+.--.+ -+.+...|. .|.+-|... .+|+......+++.+......+..
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~-ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGED-YPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcc-cHHHHHHHHHHHHHHhhhhccccc
Confidence 55666788899999999999888877644332 222223333 245566655 788888777777777655544432
Q ss_pred hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 039015 500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN----HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA 575 (685)
Q Consensus 500 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n----~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La 575 (685)
---..|.+|.|..+|++....+..+.+..+..+|.+... +..|. +---|+++| .+.+.+++..|...+..++
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~L-ks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSL-KSWNKEIRRNATETFGCIS 758 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHhhHHHHHhhhhhhhhHH
Confidence 222368999999999998888989998888888866543 33332 222367777 4566778888777777665
Q ss_pred c
Q 039015 576 E 576 (685)
Q Consensus 576 ~ 576 (685)
.
T Consensus 759 ~ 759 (975)
T COG5181 759 R 759 (975)
T ss_pred h
Confidence 4
No 188
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.50 E-value=3.3 Score=45.27 Aligned_cols=127 Identities=17% Similarity=0.265 Sum_probs=97.1
Q ss_pred HHHhhcCCCHHHHHHHHHHhhccccCc----chhHHHHhcCcHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCchh
Q 039015 426 LLKLLSSKDSSTQENAIAALLNLSKHC----KSKSMVVESGGLDFIVDMVKKGL------KVEARQHAAATLFYIASIEE 495 (685)
Q Consensus 426 Lv~lL~s~~~~~~~~A~~aL~nLs~~~----~~k~~i~~~g~i~~Lv~lL~~~~------~~e~~~~Aa~~L~~Ls~~~~ 495 (685)
+..++...+.+-+-.|+-....+.+++ .||..+.++-+.+.+=++|.+++ +.-.+..+.++|...+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 456666667777777777777777665 35888999999999999997542 33457788888999998886
Q ss_pred HH--HHhhcCCCcHHHHHHHhccC-CHH------HHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHh
Q 039015 496 YR--KLIGENPEAIPALVDMVRDG-TDR------SKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLL 555 (685)
Q Consensus 496 ~~--~~i~~~~g~i~~Lv~lL~~~-~~~------~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL 555 (685)
.. +.+.. .||.|...+..+ +++ ...++-.+|+..+..+.....++..|+++.+-++-
T Consensus 96 lAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y 161 (698)
T KOG2611|consen 96 LASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMY 161 (698)
T ss_pred hccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHH
Confidence 42 33333 599999998653 333 56788999999999999999999999999999875
No 189
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.43 E-value=0.017 Score=60.33 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=40.3
Q ss_pred cCcCccccCCCceeccCcccccHHHHHHHHHc-CCCCCCCCCccccCC
Q 039015 282 TCPISLEIMKDPVTLSTGHTYDRASILKWFRA-GNSTCPKTGERLQSK 328 (685)
Q Consensus 282 ~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~-~~~~CP~c~~~l~~~ 328 (685)
.|.||-+-=+|=-+=+|||-.|-.|+..|..+ +..+||.||..+.-+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 69999998888667799999999999999964 478999999887644
No 190
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.021 Score=45.61 Aligned_cols=51 Identities=27% Similarity=0.466 Sum_probs=39.0
Q ss_pred CCCCCccCcCccccCCC-ceec-cCcccccHHHHHHHHHc--CCCCCCCCCcccc
Q 039015 276 LTPDDFTCPISLEIMKD-PVTL-STGHTYDRASILKWFRA--GNSTCPKTGERLQ 326 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~d-Pv~~-~cghtfcr~ci~~~~~~--~~~~CP~c~~~l~ 326 (685)
..+-+-.||-|.-.-.| |.+. -|.|.|...||.+|+.. ....||.||+...
T Consensus 27 Rm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 27 RMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 45666778877766666 4444 79999999999999985 2468999998753
No 191
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.24 E-value=0.9 Score=48.52 Aligned_cols=225 Identities=17% Similarity=0.155 Sum_probs=157.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhh-HHHh--hCCHHHHHHhh-cC-CCHHHHHHHHHHhhccccCcc
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRS-CLVE--VGCIPSLLKLL-SS-KDSSTQENAIAALLNLSKHCK 453 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~-~i~~--~G~ip~Lv~lL-~s-~~~~~~~~A~~aL~nLs~~~~ 453 (685)
+.+..|+..|..-+-+.+..++....++.+.....+. ..++ ..-.|-++..| .. +++++...+-.+|.....++.
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~ 155 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHES 155 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHH
Confidence 3467778888888899999988888888877666654 2221 12223333323 22 578888899999999999998
Q ss_pred hhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCchhHHHHh-hcC-CCcHHHHHHHhccCCHHHHHHHHHHHH
Q 039015 454 SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYI-ASIEEYRKLI-GEN-PEAIPALVDMVRDGTDRSKKNALVAIF 530 (685)
Q Consensus 454 ~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L-s~~~~~~~~i-~~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 530 (685)
-...|.....+..+......+ +-++...|..++..| ..+....... ..+ ...+.....+|.+++.-++..++..|.
T Consensus 156 l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ 234 (335)
T PF08569_consen 156 LAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLG 234 (335)
T ss_dssp HHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHH
Confidence 888888888999999999988 999999999999885 4444443333 221 146777888999999999999999999
Q ss_pred HhcCCCCcHHHHHhc----CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHH
Q 039015 531 GLLMHSGNHWRFLAA----GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGK 606 (685)
Q Consensus 531 nLs~~~~n~~~iv~~----G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~ 606 (685)
.|-.+..|...|... .-+..++.+| .+.+..++-+|..++-....+|.. -+.+..+|... +
T Consensus 235 ellldr~n~~vm~~yi~~~~nLkl~M~lL-~d~sk~Iq~eAFhvFKvFVANp~K---------~~~I~~iL~~N-----r 299 (335)
T PF08569_consen 235 ELLLDRSNFNVMTRYISSPENLKLMMNLL-RDKSKNIQFEAFHVFKVFVANPNK---------PPPIVDILIKN-----R 299 (335)
T ss_dssp HHHHSGGGHHHHHHHTT-HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHH-SS----------BHHHHHHHHHT-----H
T ss_pred HHHHchhHHHHHHHHHCCHHHHHHHHHHh-cCcchhhhHHHHHHHHHHHhCCCC---------ChHHHHHHHHH-----H
Confidence 999999987766542 3466678888 678889999999998877665432 34455555432 6
Q ss_pred HHHHHHHHHHhcc
Q 039015 607 EYCVSLLLALCIN 619 (685)
Q Consensus 607 e~a~~~L~~L~~~ 619 (685)
+.-+..|..+-..
T Consensus 300 ~kLl~fl~~f~~~ 312 (335)
T PF08569_consen 300 EKLLRFLKDFHTD 312 (335)
T ss_dssp HHHHHHHHTTTTT
T ss_pred HHHHHHHHhCCCC
Confidence 6666666665544
No 192
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.028 Score=58.77 Aligned_cols=50 Identities=22% Similarity=0.470 Sum_probs=35.2
Q ss_pred CCccCcCccccCCCce----eccCcccccHHHHHHHHHcC--CCCCCCCCccccCC
Q 039015 279 DDFTCPISLEIMKDPV----TLSTGHTYDRASILKWFRAG--NSTCPKTGERLQSK 328 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv----~~~cghtfcr~ci~~~~~~~--~~~CP~c~~~l~~~ 328 (685)
-.-.|.||.+..-.-- +-.|||+|.-.|+..||+.. +++||.|+-.+...
T Consensus 3 i~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 3 IMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER 58 (465)
T ss_pred ccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence 3457999944433211 22699999999999999963 35899998555543
No 193
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.15 E-value=0.011 Score=66.66 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=42.0
Q ss_pred CCCccCcCccccCCCceec---cCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 278 PDDFTCPISLEIMKDPVTL---STGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~---~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
...-.||+|..-+.|-.+. .|+|.||..||..|-.- ..+||.|+..+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 4567899999999987654 79999999999999886 7799999987754
No 194
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.12 E-value=2 Score=44.55 Aligned_cols=223 Identities=13% Similarity=0.072 Sum_probs=145.5
Q ss_pred CHHHHHHHHHHHHHHhhcCCchhhHHH-hhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcchhHHHHh-cCcHHHH
Q 039015 392 TSEEKNKVAYEVRLLTKSSIFNRSCLV-EVGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKSKSMVVE-SGGLDFI 467 (685)
Q Consensus 392 ~~~~~~~a~~~L~~La~~~~~~r~~i~-~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~i~~-~g~i~~L 467 (685)
++-.+.-|+.++.++.. .+++|..+- +.-.-..++.+|+. ++..+|-+.+-++..|+.++.....|-+ ...+.-+
T Consensus 162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 44467778899999986 677777543 44556677788876 6788999999999999988876644443 4567777
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccC---CHHHHHHHHH------------HHH
Q 039015 468 VDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDG---TDRSKKNALV------------AIF 530 (685)
Q Consensus 468 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~A~~------------aL~ 530 (685)
+.+.+......+...+++++.+++... .+-...+. .|-+..-|++|..+ +.+.+.+--. +.+
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 888775534566678888999887622 33334444 44455666666432 2222221100 011
Q ss_pred -----Hh-----cCC---------CCcHHHHHhc--CChHHHHHHhccCCCh-hHHHHHHHHHHHHhcChhcHHHHHhcC
Q 039015 531 -----GL-----LMH---------SGNHWRFLAA--GAVPLLLNLLTSSDSE-ELITDSLAVLATLAEKLDGTIAILHHG 588 (685)
Q Consensus 531 -----nL-----s~~---------~~n~~~iv~~--G~v~~Lv~lL~~~~~~-~~~~~al~~L~~La~~~~~~~~i~~~g 588 (685)
.| +-. ..|-..+.+. .++..|.++|+...+. -++-++-.+...+-..|+++..+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 11 100 1245555553 3788899999644333 333444444445555799999999999
Q ss_pred ChHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 039015 589 ALDMIMKILDSCTSRAGKEYCVSLLLALC 617 (685)
Q Consensus 589 ~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~ 617 (685)
+=..+++++.+. +++++-.|+.++..+-
T Consensus 400 ~k~~im~L~nh~-d~~VkfeAl~a~q~~i 427 (432)
T COG5231 400 VKEIIMNLINHD-DDDVKFEALQALQTCI 427 (432)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence 999999999988 9999999999986654
No 195
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.05 E-value=0.13 Score=45.91 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=59.6
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhcc
Q 039015 379 LLANFISDRL-LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNL 448 (685)
Q Consensus 379 ~~i~~Lv~~L-~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nL 448 (685)
..+..|++.| .+.++....-|+.-|..+++..+..|..+-+.|+-..++.++.++|++++..|+.++..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3688899999 555677777889999999999999999998899999999999999999999999998655
No 196
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=0.71 Score=53.05 Aligned_cols=178 Identities=16% Similarity=0.150 Sum_probs=122.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH-HHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYE-VRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~-L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
.+..+.+.|.+...+.|..|++. |..+.- ..+ -.+..|.++....+.|.+.....---|.|-+......
T Consensus 14 ei~elks~l~s~~~~kr~~a~kkvIa~Mt~-G~D------vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~--- 83 (734)
T KOG1061|consen 14 EIPELKSQLNSQSKEKRKDAVKKVIAYMTV-GKD------VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL--- 83 (734)
T ss_pred hchHHHHHhhhhhhhhHHHHHHHHHhcCcc-Ccc------hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH---
Confidence 35555566655545556655543 333332 111 1356777888888888776666655555555443332
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN 538 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 538 (685)
..+++..++.=.... ++..|..|..++..+-.. ..+. -.+.+|...++++++-+++.|+....++ +..+
T Consensus 84 -a~~avnt~~kD~~d~-np~iR~lAlrtm~~l~v~----~i~e---y~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~ 152 (734)
T KOG1061|consen 84 -AILAVNTFLKDCEDP-NPLIRALALRTMGCLRVD----KITE---YLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDID 152 (734)
T ss_pred -HHhhhhhhhccCCCC-CHHHHHHHhhceeeEeeh----HHHH---HHHHHHHHhccCCChhHHHHHHHHHHHh--hcCC
Confidence 234566666666666 889999998887776432 2222 2577899999999999999888887766 6677
Q ss_pred HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015 539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD 579 (685)
Q Consensus 539 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~ 579 (685)
.....++|.++.|-.++ .+.++.++..|+++|..+.....
T Consensus 153 ~~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 153 PDLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred hhhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhCC
Confidence 77888999999999999 68889999999999999977543
No 197
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.72 E-value=0.25 Score=40.12 Aligned_cols=67 Identities=16% Similarity=0.057 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcC
Q 039015 522 KKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHG 588 (685)
Q Consensus 522 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g 588 (685)
.|.|++|+.|++..+.....+.+.++|+.++++...++...++--|.-+|..++...+|.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 5789999999999888887777889999999999777888999999999999999999998887654
No 198
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=9.3 Score=44.48 Aligned_cols=250 Identities=15% Similarity=0.182 Sum_probs=145.4
Q ss_pred hhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-c
Q 039015 375 GAMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-K 453 (685)
Q Consensus 375 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~ 453 (685)
+..+...+...++|+..++-++.+|+-+...+-...++.-+.| ++.-.++|.+.+..+...++..+..+.... +
T Consensus 138 EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~ 212 (866)
T KOG1062|consen 138 EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHGVLIAGLHLITELCKISPD 212 (866)
T ss_pred HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH
Confidence 3444556666777888999999999988877766566544433 445566777777777777777766665442 2
Q ss_pred hhHHHHhcCcHHHHHHHhcC----C----------CCHHHHHHHHHHHHHhcCch-hHHHHhhc-------------CCC
Q 039015 454 SKSMVVESGGLDFIVDMVKK----G----------LKVEARQHAAATLFYIASIE-EYRKLIGE-------------NPE 505 (685)
Q Consensus 454 ~k~~i~~~g~i~~Lv~lL~~----~----------~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~-------------~~g 505 (685)
+-..+-+ .++.+|..|+. + .++-.+.....+|.-|-.++ +..+.+.. +.|
T Consensus 213 ~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~G 290 (866)
T KOG1062|consen 213 ALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAG 290 (866)
T ss_pred HHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccch
Confidence 3222222 45555555531 1 14556666666666665554 22222211 011
Q ss_pred ------cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHH------------------HHHHhccCCCh
Q 039015 506 ------AIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPL------------------LLNLLTSSDSE 561 (685)
Q Consensus 506 ------~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~------------------Lv~lL~~~~~~ 561 (685)
+|..++.+. .+...+..|+.+|.....+.+|-.+-+ ++.. +++.| .+++.
T Consensus 291 nAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYv---aLn~L~r~V~~d~~avqrHr~tIleCL-~DpD~ 364 (866)
T KOG1062|consen 291 NAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYV---ALNMLLRVVQQDPTAVQRHRSTILECL-KDPDV 364 (866)
T ss_pred hHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceeee---ehhhHHhhhcCCcHHHHHHHHHHHHHh-cCCcH
Confidence 233333332 345567778888887776666433222 2333 44455 45667
Q ss_pred hHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcH-H------HHHHHHhcCC-
Q 039015 562 ELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGA-N------VVALLVKSPS- 633 (685)
Q Consensus 562 ~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~-~------~~~~l~~~~g- 633 (685)
.++..|+.++..|......+.. +..|+.+|... ++..+...++-+..++..-.+ + ...++ ..+|
T Consensus 365 SIkrralELs~~lvn~~Nv~~m------v~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl-~~aG~ 436 (866)
T KOG1062|consen 365 SIKRRALELSYALVNESNVRVM------VKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVL-KTAGD 436 (866)
T ss_pred HHHHHHHHHHHHHhccccHHHH------HHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH-Hhccc
Confidence 7777777777777654333322 34577788877 899999999888888864322 1 11122 2233
Q ss_pred -----cHHHHHHHHhcC
Q 039015 634 -----LMGSLYSLLSQG 645 (685)
Q Consensus 634 -----~i~~L~~Ll~~g 645 (685)
++..|+.|+.++
T Consensus 437 ~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 437 FVNDDVVNNLLRLIANA 453 (866)
T ss_pred ccchhhHHHHHHHHhcC
Confidence 677788888777
No 199
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.66 E-value=0.073 Score=39.89 Aligned_cols=44 Identities=27% Similarity=0.509 Sum_probs=24.4
Q ss_pred ccCcCccccCCCceec-cCccc--ccHHHHHHHH-HcCCCCCCCCCcc
Q 039015 281 FTCPISLEIMKDPVTL-STGHT--YDRASILKWF-RAGNSTCPKTGER 324 (685)
Q Consensus 281 ~~CpIc~~~m~dPv~~-~cght--fcr~ci~~~~-~~~~~~CP~c~~~ 324 (685)
+.|||+...|.-|+.- .|.|. |+...+.... ..+...||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 7899999999999976 79986 6664433333 3456789999763
No 200
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=93.62 E-value=0.056 Score=53.91 Aligned_cols=47 Identities=32% Similarity=0.432 Sum_probs=38.4
Q ss_pred CCCccCcCccccCCCceec-cCcccccHHHHHHHHHc-CCCCCCCCCcc
Q 039015 278 PDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRA-GNSTCPKTGER 324 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~-~~~~CP~c~~~ 324 (685)
.-+++|||+......|++. .|||.|+|..|..++.. ....||.-+..
T Consensus 174 ~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 174 VFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 3458999999999999987 79999999999998864 24579984443
No 201
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=0.049 Score=53.57 Aligned_cols=38 Identities=29% Similarity=0.483 Sum_probs=33.4
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA 313 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~ 313 (685)
.+.+.-+|.+|++..+|||+.+-||.|||.||.+++-.
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 45556678999999999999999999999999998864
No 202
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.046 Score=57.11 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=40.4
Q ss_pred CCCccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
...-.|-||+.--+|=+++||-|. .|..|-+... -.+..||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence 335789999999999999999997 5999976544 447889999998753
No 203
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.34 E-value=0.057 Score=39.76 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=22.0
Q ss_pred CcCccccCC--Cceec--cCcccccHHHHHHHHHcCCCCCCCCCccc
Q 039015 283 CPISLEIMK--DPVTL--STGHTYDRASILKWFRAGNSTCPKTGERL 325 (685)
Q Consensus 283 CpIc~~~m~--dPv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~l 325 (685)
||+|.+.|. |--+. +||+..|+.|..+-...+...||-|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789988882 11123 69999999998888776688999998764
No 204
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.13 E-value=0.045 Score=41.25 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=36.6
Q ss_pred CccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
+..|-.|...-...++++|||..|+.|..-+ .-..||.|+.++...
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCC
Confidence 4567778888888899999999999996543 356799999988654
No 205
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.11 E-value=1.3 Score=51.99 Aligned_cols=248 Identities=14% Similarity=0.140 Sum_probs=129.1
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHH-hhcCCCHHHHHHHHH---HhhccccCc
Q 039015 377 MKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLK-LLSSKDSSTQENAIA---ALLNLSKHC 452 (685)
Q Consensus 377 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~-lL~s~~~~~~~~A~~---aL~nLs~~~ 452 (685)
....+..|++.|+..+.++|..|+++|.-|+..-.+.+-.- .+..|.. +++..+..--..++. .+.|+.-
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P-- 118 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGKEQLRDISSIGLKTVIANLPP-- 118 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccchhhhccHHHHHHHHHHhcCCC--
Confidence 34568899999999999999999999999986554444211 1223332 233222111112222 2344432
Q ss_pred chhHHHHhcCcHHHHHHHhcCC-----CCHHHHHHHHHHHHHh-cCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHH
Q 039015 453 KSKSMVVESGGLDFIVDMVKKG-----LKVEARQHAAATLFYI-ASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNAL 526 (685)
Q Consensus 453 ~~k~~i~~~g~i~~Lv~lL~~~-----~~~e~~~~Aa~~L~~L-s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~ 526 (685)
.-.......+.+.+...|..+ ....++..+...+..+ +...+.-..+ . .+....++.-+.+.-..+++.|+
T Consensus 119 -~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~f-h-~~il~~l~~ql~s~R~aVrKkai 195 (1233)
T KOG1824|consen 119 -SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNF-H-LSILKCLLPQLQSPRLAVRKKAI 195 (1233)
T ss_pred -ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcch-H-HHHHHHHhhcccChHHHHHHHHH
Confidence 222223344445555544432 1122344444433322 1111111111 1 34455555555565577899999
Q ss_pred HHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhc-C-ChHHHHHHh---hcCC
Q 039015 527 VAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHH-G-ALDMIMKIL---DSCT 601 (685)
Q Consensus 527 ~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~-g-~v~~Lv~lL---~~~~ 601 (685)
.+|..|+....+- .=.+++..|++=|.....+....--..+|..++.... ..+..+ + .+|.+.+.. ...
T Consensus 196 ~~l~~la~~~~~~---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag--~r~~~h~~~ivp~v~~y~~~~e~~- 269 (1233)
T KOG1824|consen 196 TALGHLASSCNRD---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG--HRFGSHLDKIVPLVADYCNKIEED- 269 (1233)
T ss_pred HHHHHHHHhcCHH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc--chhhcccchhhHHHHHHhcccccC-
Confidence 9999998765432 1123456667666433344333333333443333211 112222 2 267777766 445
Q ss_pred ChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHH
Q 039015 602 SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLL 642 (685)
Q Consensus 602 s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll 642 (685)
.++.+|.++.+|..+-...+.++.... +.++..+...+
T Consensus 270 dDELrE~~lQale~fl~rcp~ei~p~~---pei~~l~l~yi 307 (1233)
T KOG1824|consen 270 DDELREYCLQALESFLRRCPKEILPHV---PEIINLCLSYI 307 (1233)
T ss_pred cHHHHHHHHHHHHHHHHhChhhhcccc---hHHHHHHHHHh
Confidence 789999999999988887655433222 23445555544
No 206
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.054 Score=56.64 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=38.6
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
..+..-.|-||.+-..+.+.++|||+.| |+.-... ...||.|++.+.
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 5667789999999999999999999988 7655433 566999998764
No 207
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=18 Score=41.60 Aligned_cols=213 Identities=15% Similarity=0.160 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCC
Q 039015 396 KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGL 475 (685)
Q Consensus 396 ~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~ 475 (685)
+...+.+.-+|+.+-+.....+.. ++..|-++|++....++-.|+..++.|+..+...+.+-.. .+.++..|+...
T Consensus 306 ~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkter 381 (938)
T KOG1077|consen 306 KNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTER 381 (938)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhcccc
Confidence 444555555555545444555544 3667888888888889999999999998887777776666 889999999665
Q ss_pred CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CC-C-------------cHH
Q 039015 476 KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM-HS-G-------------NHW 540 (685)
Q Consensus 476 ~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~-~-------------n~~ 540 (685)
+..+|..|+..|+-++.....+ .| +.-|+..|...+...++.-+.=..-|+. +. + ...
T Consensus 382 DvSirrravDLLY~mcD~~Nak-~I------V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriag 454 (938)
T KOG1077|consen 382 DVSIRRRAVDLLYAMCDVSNAK-QI------VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG 454 (938)
T ss_pred chHHHHHHHHHHHHHhchhhHH-HH------HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence 8999999999999997655444 33 3346666666665555543322222221 11 1 011
Q ss_pred HHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCC-h----------------HHHHHHhhcC---
Q 039015 541 RFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGA-L----------------DMIMKILDSC--- 600 (685)
Q Consensus 541 ~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~-v----------------~~Lv~lL~~~--- 600 (685)
..++.+++..++++.- .+++++.-|+.-+.-.-..+..-+.++..|| | ..+..++...
T Consensus 455 d~vsdeVW~RvvQiVv--Nnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~ 532 (938)
T KOG1077|consen 455 DYVSDEVWYRVVQIVV--NNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHL 532 (938)
T ss_pred ccccHHHHHHhheeEe--cchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhcc
Confidence 2355567777787763 3566766666666555454555555555554 2 2222233321
Q ss_pred CChhHHHHHHHHHHHHhccCc
Q 039015 601 TSRAGKEYCVSLLLALCINGG 621 (685)
Q Consensus 601 ~s~~~~e~a~~~L~~L~~~~~ 621 (685)
.++..+---+.....++...+
T Consensus 533 ~s~~tr~lLLtTyiKl~nl~P 553 (938)
T KOG1077|consen 533 CSPVTRALLLTTYIKLINLFP 553 (938)
T ss_pred CChhHHHHHHHHHHHHHhhCh
Confidence 156666666666666766553
No 208
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.87 E-value=1.8 Score=49.92 Aligned_cols=167 Identities=17% Similarity=0.158 Sum_probs=99.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hH
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KS 456 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~ 456 (685)
+-....|.+.+.+.++.+|..|+-.+..+= ..+.......|.++.|-.++.+.++.+..+|+.+|..+.....+ ..
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~---~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLF---DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhh---cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 345778888899999999998888877764 35677788899999999999999999999999999998765543 11
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
.-...-.+..++..|..- +.= .-+.+|-.|+..- +.++. ...+..+...|++.+..+...+..++.++..
T Consensus 197 ~~l~~~~~~~lL~al~ec-~EW---~qi~IL~~l~~y~p~d~~ea----~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNEC-TEW---GQIFILDCLAEYVPKDSREA----EDICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred ccccHHHHHHHHHHHHHh-hhh---hHHHHHHHHHhcCCCCchhH----HHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 111112222222222211 111 1122333333211 11111 1234555556666666666666666666665
Q ss_pred CCCcHHHHHhcCChHHHHHHh
Q 039015 535 HSGNHWRFLAAGAVPLLLNLL 555 (685)
Q Consensus 535 ~~~n~~~iv~~G~v~~Lv~lL 555 (685)
+........-...-++|+.++
T Consensus 269 ~~~~~~~~~~~K~~~pl~tll 289 (734)
T KOG1061|consen 269 YLKQVNELLFKKVAPPLVTLL 289 (734)
T ss_pred HHHHHHHHHHHHhcccceeee
Confidence 544443444444555555555
No 209
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.83 E-value=0.068 Score=54.79 Aligned_cols=50 Identities=18% Similarity=0.353 Sum_probs=36.4
Q ss_pred CCccCcCccccCCC--ceec--cCcccccHHHHHHHHHcCCCCCCCCCccccCCC
Q 039015 279 DDFTCPISLEIMKD--PVTL--STGHTYDRASILKWFRAGNSTCPKTGERLQSKE 329 (685)
Q Consensus 279 ~~~~CpIc~~~m~d--Pv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~ 329 (685)
+++ ||+|.+.|.- --+. +||...|+.|....-+.=+..||.||....+..
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 345 9999999873 2222 689999999976554444678999998876553
No 210
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.83 E-value=0.028 Score=65.20 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=40.1
Q ss_pred ccCcCccccCCCceeccCcccccHHHHHHHHHcC-CCCCCCCCccccCC
Q 039015 281 FTCPISLEIMKDPVTLSTGHTYDRASILKWFRAG-NSTCPKTGERLQSK 328 (685)
Q Consensus 281 ~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~-~~~CP~c~~~l~~~ 328 (685)
+.|++|.+ ..+|+++.|||.||+.|+...+... ...||.|+..+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 99999999 8889999999999999999988753 33699998776544
No 211
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.73 E-value=18 Score=42.56 Aligned_cols=139 Identities=17% Similarity=0.106 Sum_probs=104.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHh
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVE 460 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~ 460 (685)
.+.+++...+.|.+.++-.-..|...++.+++ .++. ++..+.+=|.++|+.+|..|++.+..|=. .=+-
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~~------~el~ 125 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALL---AVNTIQKDLQDPNEEIRGFALRTLSLLRV------KELL 125 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHH---HHHHHHhhccCCCHHHHHHHHHHHHhcCh------HHHH
Confidence 45556666677888888777778888876652 2222 36677788888999999999999876532 1122
Q ss_pred cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 461 SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 461 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
..+++++.+.+.++ ++.+|..|+-+++++-..+ +..+.+ .|.+..+..++.+.+|.+..+|+.+|+.+.-
T Consensus 126 ~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld--~~l~~~-~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 126 GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD--KDLYHE-LGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC--Hhhhhc-ccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 45688999999999 9999999999999986433 222333 6779999999999999999999999998843
No 212
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.70 E-value=0.93 Score=46.25 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhcc-ccCcchhHHHHhcCcHHHHHHHhc
Q 039015 395 EKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNL-SKHCKSKSMVVESGGLDFIVDMVK 472 (685)
Q Consensus 395 ~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nL-s~~~~~k~~i~~~g~i~~Lv~lL~ 472 (685)
....|+..|+-++--++..|..+....++..|+++|.. ..+.++..++.+|..+ ..++.|...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34567788888888889999999999999999999954 6789999999888555 566688888889999999999998
Q ss_pred CC-CCHHHHHHHHHHHHH
Q 039015 473 KG-LKVEARQHAAATLFY 489 (685)
Q Consensus 473 ~~-~~~e~~~~Aa~~L~~ 489 (685)
+. .+.+++...+..|+.
T Consensus 187 ~~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYF 204 (257)
T ss_pred cccccHHHhHHHHHHHHH
Confidence 65 356777777777753
No 213
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.64 E-value=2.3 Score=50.00 Aligned_cols=267 Identities=13% Similarity=0.124 Sum_probs=144.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-HhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chh-HHHH
Q 039015 383 FISDRLLEGTSEEKNKVAYEVRL-LTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSK-SMVV 459 (685)
Q Consensus 383 ~Lv~~L~s~~~~~~~~a~~~L~~-La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k-~~i~ 459 (685)
.|++++.+.|-+.|.=|+.-|-. |-+ +..+-..=.+...+..|+++|++.+.++|..|+.+|.-|+.-- +.+ +.+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqk-dsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~- 86 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQK-DSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETI- 86 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHh-hhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHH-
Confidence 67788888888888777655432 221 1111111123467889999999999999999999999887321 111 111
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHH-HHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc-----CC-HHHHHHHHHHHHHh
Q 039015 460 ESGGLDFIVDMVKKGLKVEARQH-AAATLFYIASIEEYRKLIGENPEAIPALVDMVRD-----GT-DRSKKNALVAIFGL 532 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~e~~~~-Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~-~~~~~~A~~aL~nL 532 (685)
++.|..-+-+| ....|.- +.+.....+..+..-..... +.+++.+...+.. ++ ...+-.++..+.-+
T Consensus 87 ----ve~L~~~~~s~-keq~rdissi~Lktvi~nl~P~~~~~la-~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ 160 (1233)
T KOG1824|consen 87 ----VENLCSNMLSG-KEQLRDISSIGLKTVIANLPPSSSSFLA-ATVCKRITPKLKQAISKQEDVSAIKCEVLDILADV 160 (1233)
T ss_pred ----HHHHhhhhccc-hhhhccHHHHHHHHHHhcCCCccccccc-cHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence 22333332234 3333332 22222222322221111111 2334444444432 22 23455555555444
Q ss_pred cCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHH
Q 039015 533 LMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVS 611 (685)
Q Consensus 533 s~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~ 611 (685)
-..- +--.. -..+....++--| .+....++..|..+|..|+..-. +.... +.+..|++=|....++....--+.
T Consensus 161 lsr~g~ll~~-fh~~il~~l~~ql-~s~R~aVrKkai~~l~~la~~~~-~~ly~--~li~~Ll~~L~~~~q~~~~rt~Iq 235 (1233)
T KOG1824|consen 161 LSRFGTLLPN-FHLSILKCLLPQL-QSPRLAVRKKAITALGHLASSCN-RDLYV--ELIEHLLKGLSNRTQMSATRTYIQ 235 (1233)
T ss_pred HHhhcccCcc-hHHHHHHHHhhcc-cChHHHHHHHHHHHHHHHHHhcC-HHHHH--HHHHHHHhccCCCCchHHHHHHHH
Confidence 3221 11111 2334444555555 45678899999999999987421 12211 224445443332236667777888
Q ss_pred HHHHHhccCcHHHHHHHHhcCCcHHHHHHHH---hcCChHHHHHHHHHHHHHHHhhc
Q 039015 612 LLLALCINGGANVVALLVKSPSLMGSLYSLL---SQGSSRASKKASALIRILHEFYE 665 (685)
Q Consensus 612 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll---~~g~~~~k~~A~~lL~~l~~~~~ 665 (685)
+|..+|...+...-..+ ..++|.+.... ...++..+++.-..+..+-...+
T Consensus 236 ~l~~i~r~ag~r~~~h~---~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp 289 (1233)
T KOG1824|consen 236 CLAAICRQAGHRFGSHL---DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP 289 (1233)
T ss_pred HHHHHHHHhcchhhccc---chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh
Confidence 88888887654332222 34678888888 66677888887777766655443
No 214
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.59 E-value=1.5 Score=50.80 Aligned_cols=192 Identities=14% Similarity=0.087 Sum_probs=129.0
Q ss_pred ccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCchhHHHHhhcCCCcHHHHHHHhccCC-HHHHHHHH
Q 039015 449 SKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFY-IASIEEYRKLIGENPEAIPALVDMVRDGT-DRSKKNAL 526 (685)
Q Consensus 449 s~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~ 526 (685)
+.+...+...+..|+.+.++.+...+ +.+.+..+..+|.. ++...+ .....++++...+.+.. .-..-.++
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q-~e~akl~~~~aL~~~i~f~~~------~~~~v~~~~~s~~~~d~~~~en~E~L 563 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQ-FEEAKLKWYHALAGKIDFPGE------RSYEVVKPLDSALHNDEKGLENFEAL 563 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHh-chHHHHHHHHHHhhhcCCCCC------chhhhhhhhcchhhhhHHHHHHHHHH
Confidence 44555677888999999999999988 88888888888872 111111 01345677777765533 22344789
Q ss_pred HHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHH-HHhc-CChHHHHHHhhcCCCh
Q 039015 527 VAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIA-ILHH-GALDMIMKILDSCTSR 603 (685)
Q Consensus 527 ~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~-i~~~-g~v~~Lv~lL~~~~s~ 603 (685)
.++.||+... ..+.++++.-+++.+-.++ ..+++..+..++..+.||..++..-.. +++. .+++.....+... ..
T Consensus 564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~-~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E 641 (748)
T KOG4151|consen 564 EALTNLASISESDRQKILKEKALGKIEELM-TEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DE 641 (748)
T ss_pred HHhhcccCcchhhHHHHHHHhcchhhHHHh-hcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hh
Confidence 9999999755 4788898888888877676 677889999999999999998876554 4552 3477666666554 55
Q ss_pred hHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHH
Q 039015 604 AGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRAS 650 (685)
Q Consensus 604 ~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k 650 (685)
...-.+++++..+.......+.. +..-......++.++.++...++
T Consensus 642 ~~~lA~a~a~a~I~sv~~n~c~~-~~~~~~~~e~~~~~i~~~~~~~q 687 (748)
T KOG4151|consen 642 KFELAGAGALAAITSVVENHCSR-ILELLEWLEILVRAIQDEDDEIQ 687 (748)
T ss_pred HHhhhccccccchhhcchhhhhh-HHHhhcchHHHHHhhcCchhhhh
Confidence 55556666666555443223322 22223456777777777766654
No 215
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=92.59 E-value=2.5 Score=47.53 Aligned_cols=252 Identities=18% Similarity=0.124 Sum_probs=143.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc---hhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF---NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~---~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
+.++.|...|.+....++.+.+..+..++...++ .|+|+.-. =.|+.+|.+.+.+++.+|...+.-+|.
T Consensus 688 ~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc---feLvd~Lks~nKeiRR~A~~tfG~Is~----- 759 (975)
T COG5181 688 GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRIC---FELVDSLKSWNKEIRRNATETFGCISR----- 759 (975)
T ss_pred hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH---HHHHHHHHHhhHHHHHhhhhhhhhHHh-----
Confidence 3567777888877788888888888888887765 35665532 246788889999999999999887763
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH 535 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 535 (685)
. -|--+.|.-+|.+= ..+.|.+-..+-..++...+++..+ .++|.|+.=-..+...++.-.+.|+..+-.+
T Consensus 760 -a---iGPqdvL~~LlnnL-kvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 760 -A---IGPQDVLDILLNNL-KVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred -h---cCHHHHHHHHHhcc-hHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHH
Confidence 1 23334444444433 3444444444433344444433322 2456555544445556666667777666544
Q ss_pred CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhc------CCChhHHHHH
Q 039015 536 SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDS------CTSRAGKEYC 609 (685)
Q Consensus 536 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~------~~s~~~~e~a 609 (685)
-.+...=.-.-+.|.|-+.| .+.++.-+.-|..++.+|+-+..|. |.....+.+|+. .++|.+...-
T Consensus 831 ig~~s~dYvy~itPlleDAl-tDrD~vhRqta~nvI~Hl~Lnc~gt------g~eda~IHLlNllwpNIle~sPhvi~~~ 903 (975)
T COG5181 831 IGQASLDYVYSITPLLEDAL-TDRDPVHRQTAMNVIRHLVLNCPGT------GDEDAAIHLLNLLWPNILEPSPHVIQSF 903 (975)
T ss_pred HHHHHHHHHHHhhHHHHhhh-cccchHHHHHHHHHHHHHhcCCCCc------ccHHHHHHHHHHhhhhccCCCcHHHHHH
Confidence 44333322233566666677 6777778888999999998865432 222333333221 1266666554
Q ss_pred HHHHHHHhccCcHHHHHHHHhcCC-cHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015 610 VSLLLALCINGGANVVALLVKSPS-LMGSLYSLLSQGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 610 ~~~L~~L~~~~~~~~~~~l~~~~g-~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 664 (685)
-..+-.++.. +. .| .+..++.=+-.++..+++.-+...+.+-.++
T Consensus 904 ~Eg~e~~~~~--------lg--~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~ 949 (975)
T COG5181 904 DEGMESFATV--------LG--SGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFD 949 (975)
T ss_pred HHHHHHHHHH--------hc--cHHHHHHHHHhccCchHHHHHHHHHHHhhhhhcc
Confidence 4444333322 11 11 1223333344445556665566666655443
No 216
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.38 E-value=0.98 Score=39.01 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=55.4
Q ss_pred ChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015 589 ALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH 661 (685)
Q Consensus 589 ~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 661 (685)
.++.++..+.+. +.+++..|+.+|.+++........... ..+++.|..++.+.++.++..|.-|-++|.
T Consensus 28 Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f---~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 28 ILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF---NEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 367788888887 999999999999999987555444333 346889999999999999999987777663
No 217
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.25 E-value=0.76 Score=44.56 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCch-hhHHHhhCCHHHHHHhhcC---------CCHHHHHHHHHHhhccc
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFN-RSCLVEVGCIPSLLKLLSS---------KDSSTQENAIAALLNLS 449 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~-r~~i~~~G~ip~Lv~lL~s---------~~~~~~~~A~~aL~nLs 449 (685)
....++..|.++.... +.+..|+..-+..+.. -..|++.||+..|+.+|.. .+...+..++.+|..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4677788887665443 5556666555434322 3356678999999998865 34578888999999998
Q ss_pred cCcchhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 039015 450 KHCKSKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIA 491 (685)
Q Consensus 450 ~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls 491 (685)
.+..+...++ ..+++..|+..|.+. +..++..++.+|..++
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 8888877777 589999999999988 9999999999998876
No 218
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=92.19 E-value=15 Score=37.46 Aligned_cols=197 Identities=16% Similarity=0.182 Sum_probs=104.5
Q ss_pred hCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHH
Q 039015 420 VGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYR 497 (685)
Q Consensus 420 ~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~ 497 (685)
..++|.|+..|.. ..+.++..|..+|.++- + .+.++.+-+..+.. ..++++.+.-++..+--.+...
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp-~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDP-CKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCC-ccccchHHHHHHHHHHHhhccc
Confidence 3467888877765 44667777777777654 2 22233333333333 4455554444444442111000
Q ss_pred H-----Hhh-------cCCCcHHHHHHHhccCCH-HH-HHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhH
Q 039015 498 K-----LIG-------ENPEAIPALVDMVRDGTD-RS-KKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEEL 563 (685)
Q Consensus 498 ~-----~i~-------~~~g~i~~Lv~lL~~~~~-~~-~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~ 563 (685)
. ... ...+-|..|-..|.+.+. .. +..|.-+|.|+- -..+|-.|++=| .+++.-.
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g----------~EeaI~al~~~l-~~~Salf 203 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG----------TEEAINALIDGL-ADDSALF 203 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC----------cHHHHHHHHHhc-ccchHHH
Confidence 0 000 012234455554444332 22 223333333331 112355566666 3446667
Q ss_pred HHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhc-CCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHH
Q 039015 564 ITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDS-CTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLL 642 (685)
Q Consensus 564 ~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~-~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll 642 (685)
+..+.-+|..|-. .-+||.|.+.|.. .-.|-++..|+.+|..++.. +++ +.|.+.+
T Consensus 204 rhEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~~~----------~vL~e~~ 260 (289)
T KOG0567|consen 204 RHEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE---DCV----------EVLKEYL 260 (289)
T ss_pred HHHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---HHH----------HHHHHHc
Confidence 7777777776632 1248888885543 23778888999999888753 333 3555677
Q ss_pred hcCChHHHHHHHHHHHHHH
Q 039015 643 SQGSSRASKKASALIRILH 661 (685)
Q Consensus 643 ~~g~~~~k~~A~~lL~~l~ 661 (685)
.+..+.+++-+...|.++.
T Consensus 261 ~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 261 GDEERVVRESCEVALDMLE 279 (289)
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 7777777777777776653
No 219
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.13 E-value=0.12 Score=54.31 Aligned_cols=63 Identities=25% Similarity=0.309 Sum_probs=49.5
Q ss_pred ccCcCccccCCC------ceeccCcccccHHHHHHHHHcCCCCCCCCCccc--cCC---CCcccHHHHhhHHHH
Q 039015 281 FTCPISLEIMKD------PVTLSTGHTYDRASILKWFRAGNSTCPKTGERL--QSK---ELLVNLVLKRIIQDW 343 (685)
Q Consensus 281 ~~CpIc~~~m~d------Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l--~~~---~l~~n~~l~~~i~~~ 343 (685)
+.|-||.+-+.. |-++.|||++|..|+.+.+..+.-.||.|+... ... .+..|+.+...++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 567777776653 667789999999999988887777899999983 322 577788888888776
No 220
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.09 E-value=1.3 Score=45.13 Aligned_cols=99 Identities=20% Similarity=0.283 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhc-CCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH-hcChhcHHHHHhcCChHHHHHHhh
Q 039015 521 SKKNALVAIFGLL-MHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATL-AEKLDGTIAILHHGALDMIMKILD 598 (685)
Q Consensus 521 ~~~~A~~aL~nLs-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L-a~~~~~~~~i~~~g~v~~Lv~lL~ 598 (685)
....|+.+|..++ .+++.+..+-+..++..|+++|.......++..++.+|..+ ..++.+...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 4567889999999 57778999999999999999995445677777777777655 668999999999999999999998
Q ss_pred cCC-ChhHHHHHHHHHHHHhcc
Q 039015 599 SCT-SRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 599 ~~~-s~~~~e~a~~~L~~L~~~ 619 (685)
+.+ +..++-.++..|+-....
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcc
Confidence 752 556777888888776654
No 221
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.87 E-value=6 Score=38.17 Aligned_cols=92 Identities=20% Similarity=0.169 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCc-HHHHHHH
Q 039015 392 TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGG-LDFIVDM 470 (685)
Q Consensus 392 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~-i~~Lv~l 470 (685)
++.+|..++..+..|+...+. ++ ...+|.+...|.++++.++..|+.+|..|...+--|. .|- +..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 467899999999999974432 22 2358899999999999999999999999976542221 132 3677778
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCc
Q 039015 471 VKKGLKVEARQHAAATLFYIASI 493 (685)
Q Consensus 471 L~~~~~~e~~~~Aa~~L~~Ls~~ 493 (685)
+... +++++..|...+..++..
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHh
Confidence 8777 899999999999988765
No 222
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.82 E-value=4.6 Score=46.76 Aligned_cols=262 Identities=17% Similarity=0.191 Sum_probs=150.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-----
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS----- 454 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~----- 454 (685)
..+|+-..|.+-.+-+..+|++++..|...+ -+.+.. ++..|--+|+++.+.+|-.|+++|..++.--..
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~---~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTN---SRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccC---Hhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 4677777777778888899999998887432 222222 677888899999999999999999988743221
Q ss_pred -h---HHHHh---cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--chhHHHHhhc------------CCCcHHHHHHH
Q 039015 455 -K---SMVVE---SGGLDFIVDMVKKGLKVEARQHAAATLFYIAS--IEEYRKLIGE------------NPEAIPALVDM 513 (685)
Q Consensus 455 -k---~~i~~---~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~--~~~~~~~i~~------------~~g~i~~Lv~l 513 (685)
+ ..|-+ .=+-.++..+|+.| +.+....-...+.+... .++++..+.+ ..+.+..|..+
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG-~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTG-TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhc-chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 1 12221 12355667777877 55544443333333321 2233332221 23445566665
Q ss_pred hcc-CCHHHHHHHHHHHHHhcC-CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChH
Q 039015 514 VRD-GTDRSKKNALVAIFGLLM-HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALD 591 (685)
Q Consensus 514 L~~-~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~ 591 (685)
|++ |..+-+++...+|..+.. +++.|.. +...|...+. +-+....+..+|..|-.. |-.+..-..-+.
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIE---Dce~~~i~~rILhlLG~E--gP~a~~Pskyir 469 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIE---DCEFTQIAVRILHLLGKE--GPKAPNPSKYIR 469 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHH---hccchHHHHHHHHHHhcc--CCCCCCcchhhH
Confidence 543 334556666666655543 3333332 2344555552 223344455566555431 111111111133
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015 592 MIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE 665 (685)
Q Consensus 592 ~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~ 665 (685)
.+...+.-. +..++-.|+.+|..+...+ +. +. +.+.-+|...+-+.++..+..|...|+.+..-..
T Consensus 470 ~iyNRviLE-n~ivRaaAv~alaKfg~~~-~~----l~--~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~ 535 (865)
T KOG1078|consen 470 FIYNRVILE-NAIVRAAAVSALAKFGAQD-VV----LL--PSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDD 535 (865)
T ss_pred HHhhhhhhh-hhhhHHHHHHHHHHHhcCC-CC----cc--ccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhh
Confidence 343322223 6678888999988888442 11 11 3445577788888899999999999999985443
No 223
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.71 E-value=0.58 Score=45.38 Aligned_cols=79 Identities=28% Similarity=0.442 Sum_probs=63.6
Q ss_pred HHHHHhcCChHHHHHHhcc--------CCChhHHHHHHHHHHHHhcChhcHHHHHhcCC-hHHHHHHhhcCCChhHHHHH
Q 039015 539 HWRFLAAGAVPLLLNLLTS--------SDSEELITDSLAVLATLAEKLDGTIAILHHGA-LDMIMKILDSCTSRAGKEYC 609 (685)
Q Consensus 539 ~~~iv~~G~v~~Lv~lL~~--------~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~-v~~Lv~lL~~~~s~~~~e~a 609 (685)
...+++.||+..|+++|.. ..+......++.+|..|..+..|...++.... +..|+..|.+. +..++..+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~ 178 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLA 178 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHH
Confidence 4567888899999888842 23456778899999999999999999988776 89999988776 99999999
Q ss_pred HHHHHHHhc
Q 039015 610 VSLLLALCI 618 (685)
Q Consensus 610 ~~~L~~L~~ 618 (685)
+.+|..+|.
T Consensus 179 leiL~~lc~ 187 (187)
T PF06371_consen 179 LEILAALCL 187 (187)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 999999983
No 224
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.45 E-value=19 Score=42.99 Aligned_cols=234 Identities=18% Similarity=0.186 Sum_probs=130.0
Q ss_pred HHHHHHHhcC-----CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc----CCC----HHHHHHHHHHhhc
Q 039015 381 ANFISDRLLE-----GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS----SKD----SSTQENAIAALLN 447 (685)
Q Consensus 381 i~~Lv~~L~s-----~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~----s~~----~~~~~~A~~aL~n 447 (685)
+..|+..|.+ +..+.-...++.|+..++ -..||+.+.+.|+++.|+..|. .+. ..+.+.-+.++-.
T Consensus 119 L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ 197 (802)
T PF13764_consen 119 LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIES 197 (802)
T ss_pred HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHH
Confidence 4555555533 334445566777777777 6899999999999999998774 333 5677777766655
Q ss_pred cccCcchh-H----HHHh-cC----c---HHHHHHHhcCC---CCHHHHHHHHHHHHHhcCchhHHHH-hhcCCCcHHHH
Q 039015 448 LSKHCKSK-S----MVVE-SG----G---LDFIVDMVKKG---LKVEARQHAAATLFYIASIEEYRKL-IGENPEAIPAL 510 (685)
Q Consensus 448 Ls~~~~~k-~----~i~~-~g----~---i~~Lv~lL~~~---~~~e~~~~Aa~~L~~Ls~~~~~~~~-i~~~~g~i~~L 510 (685)
|....... . .... .| . +..++..+.+. .+..+....+.+|-+|+..++.+.. +.+ -+.+.
T Consensus 198 ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~---~F~p~ 274 (802)
T PF13764_consen 198 LLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE---HFKPY 274 (802)
T ss_pred HHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH---HHHHh
Confidence 53322110 0 1011 11 2 55555555533 2577888899999999987754433 322 23443
Q ss_pred HHHhccC---CHHHHHHHHHHHHHhcCCC-------CcHHHHHhcCChHHHHHHhccC-------CChh--------HHH
Q 039015 511 VDMVRDG---TDRSKKNALVAIFGLLMHS-------GNHWRFLAAGAVPLLLNLLTSS-------DSEE--------LIT 565 (685)
Q Consensus 511 v~lL~~~---~~~~~~~A~~aL~nLs~~~-------~n~~~iv~~G~v~~Lv~lL~~~-------~~~~--------~~~ 565 (685)
+++=+-+ +++. ...+..+..++..- .-|..+++.|++...++.|... .+++ ...
T Consensus 275 l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp 353 (802)
T PF13764_consen 275 LDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP 353 (802)
T ss_pred cChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence 3432211 1111 22345555554221 2477889999999999988521 1122 234
Q ss_pred HHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015 566 DSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 566 ~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
.++.+|.-||......+.+...+.++.+-.+=...+...+=..|=.+|-.|+.+
T Consensus 354 ~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 354 YILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 477788888776554444455556654444333321222223344444445543
No 225
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.30 E-value=0.2 Score=44.83 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=42.8
Q ss_pred CCccCcCccccCCCceec----cCcccccHHHHHHHHHc--CCCCCCCCCccccCC
Q 039015 279 DDFTCPISLEIMKDPVTL----STGHTYDRASILKWFRA--GNSTCPKTGERLQSK 328 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~----~cghtfcr~ci~~~~~~--~~~~CP~c~~~l~~~ 328 (685)
.-+.|.||.+.-.|+-.+ .||...|..|.-..|+. -++.||.|+.++...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 468999999999999988 59999999999887774 478999999887654
No 226
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.98 E-value=9.7 Score=36.72 Aligned_cols=93 Identities=19% Similarity=0.236 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHh
Q 039015 476 KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLL 555 (685)
Q Consensus 476 ~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL 555 (685)
++.+|.+++.++..|+..-.+ .+ ...++.+...|+++++.+++.|+.+|.+|...+-.+.+ ...+..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~v---e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LV---EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HH---HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 367889999999988764432 11 34688999999999999999999999999765543322 12236677777
Q ss_pred ccCCChhHHHHHHHHHHHHhcC
Q 039015 556 TSSDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 556 ~~~~~~~~~~~al~~L~~La~~ 577 (685)
.|+++.++..|...+..+...
T Consensus 73 -~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 -VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred -cCCCHHHHHHHHHHHHHHHHh
Confidence 788999999999999999775
No 227
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=90.83 E-value=0.92 Score=42.95 Aligned_cols=146 Identities=15% Similarity=0.159 Sum_probs=93.5
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHH
Q 039015 423 IPSLLKLLSS--KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKL 499 (685)
Q Consensus 423 ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~ 499 (685)
+..++..|.. ..++++-.|.-++..+- +..++.. ..-+-+.+-..+..+ +.+....+..++..|--.. +....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence 4455655543 56778888887776662 3333333 222334444445555 5567778888888775444 77777
Q ss_pred hhcCCCcHHHHHHHhc--cCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChh-HHHHHHHHHHH
Q 039015 500 IGENPEAIPALVDMVR--DGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEE-LITDSLAVLAT 573 (685)
Q Consensus 500 i~~~~g~i~~Lv~lL~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~-~~~~al~~L~~ 573 (685)
+....|.++.++.++. ..+......++.+|..-| .++++...+...+++.|-++++.++++. ++..|+-+|..
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 7766899999999998 556667777777776554 4455555666667999999995555555 66666666653
No 228
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.71 E-value=0.18 Score=49.89 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=41.3
Q ss_pred CCCccCcCccccCCCcee----ccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcc
Q 039015 278 PDDFTCPISLEIMKDPVT----LSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV 332 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~----~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~ 332 (685)
...|.|||.+-.|..-.. .+|||.|-...+.+.- ...|+.|++.....+.++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence 456999999999998643 3899999988876653 568999999998776433
No 229
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.60 E-value=10 Score=44.17 Aligned_cols=210 Identities=15% Similarity=0.135 Sum_probs=140.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHh
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVE 460 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~ 460 (685)
-.-|+++|.|.....+..|.+-|-.+...+.+ -....|..|+...+.|.++....---|..-+....+-..+
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-- 108 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-- 108 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence 35678899888888899998876555433433 2345688888888899998887766666555544442222
Q ss_pred cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CcH
Q 039015 461 SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-GNH 539 (685)
Q Consensus 461 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~ 539 (685)
-|..+-+-|+.. +..+|..|..+|..+ |..+.. +=.+-++-+...+.++.+++.|+.||-.|-.-+ +-+
T Consensus 109 --SIntfQk~L~Dp-N~LiRasALRvlSsI------Rvp~Ia-PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 109 --SINTFQKALKDP-NQLIRASALRVLSSI------RVPMIA-PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred --eHHHHHhhhcCC-cHHHHHHHHHHHHhc------chhhHH-HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 255666677888 899998888887766 332222 112233334455677899999999998886544 444
Q ss_pred HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015 540 WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 540 ~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
..+++ .+=.|| .+.++.+.-.|+.+...+|-+ .-+.| ++....|..++..- ..+++-..+..|..-|++
T Consensus 179 ~qL~e-----~I~~LL-aD~splVvgsAv~AF~evCPe--rldLI--HknyrklC~ll~dv-deWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 179 DQLEE-----VIKKLL-ADRSPLVVGSAVMAFEEVCPE--RLDLI--HKNYRKLCRLLPDV-DEWGQVVLINMLTRYARH 247 (968)
T ss_pred HHHHH-----HHHHHh-cCCCCcchhHHHHHHHHhchh--HHHHh--hHHHHHHHhhccch-hhhhHHHHHHHHHHHHHh
Confidence 44333 334445 788889988888888877653 22322 24467788877665 778888888888888764
No 230
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=90.03 E-value=1.7 Score=44.87 Aligned_cols=187 Identities=16% Similarity=0.135 Sum_probs=113.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcC--cHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCchhHH
Q 039015 423 IPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESG--GLDFIVDMVKKG---LKVEARQHAAATLFYIASIEEYR 497 (685)
Q Consensus 423 ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g--~i~~Lv~lL~~~---~~~e~~~~Aa~~L~~Ls~~~~~~ 497 (685)
+..+..++.+...+-+--++..++-+..++..-..+...+ ....+..++..+ ..+..+..++.++.||-.+...+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 3444555555555556666777777777776655554322 355566655543 26788899999999999988888
Q ss_pred HHhhcCCC-cHHHHHHHhccC----CHHHHHHHHHHHHHhcCCCC-cH-HHHHhcCChHHHHHHhcc-CCChhHHHHHHH
Q 039015 498 KLIGENPE-AIPALVDMVRDG----TDRSKKNALVAIFGLLMHSG-NH-WRFLAAGAVPLLLNLLTS-SDSEELITDSLA 569 (685)
Q Consensus 498 ~~i~~~~g-~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~-n~-~~iv~~G~v~~Lv~lL~~-~~~~~~~~~al~ 569 (685)
..+....+ .|...+..+... +...+..+++.++|++..-- ++ ..-.....+..+++.+.. ..+++..-.++.
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 88877344 455555544443 56778888999999984321 11 111111234555663322 257888999999
Q ss_pred HHHHHhcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHH
Q 039015 570 VLATLAEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYC 609 (685)
Q Consensus 570 ~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a 609 (685)
+|.+|...+.........=++...+. .-..+..++.++.+
T Consensus 225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 99999987766666655434444433 33333356666554
No 231
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=89.86 E-value=23 Score=37.57 Aligned_cols=192 Identities=20% Similarity=0.196 Sum_probs=107.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc-CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC---CCcHHH
Q 039015 466 FIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE-NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH---SGNHWR 541 (685)
Q Consensus 466 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~---~~n~~~ 541 (685)
..+..+... +...|+.+...|.++....-.-..+.. ....+..+.+.++.|+.+-+..|+.++.-|+.. .+....
T Consensus 47 ~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEK-SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 334444444 678899999998887644322222322 123677888888888876666777777766654 234555
Q ss_pred HHhcCChHHHHHHhccCC-ChhHHHHHHHHHHHHhc---C-hhcHHHHHhcCChHHHHH--Hhhc-CC--------ChhH
Q 039015 542 FLAAGAVPLLLNLLTSSD-SEELITDSLAVLATLAE---K-LDGTIAILHHGALDMIMK--ILDS-CT--------SRAG 605 (685)
Q Consensus 542 iv~~G~v~~Lv~lL~~~~-~~~~~~~al~~L~~La~---~-~~~~~~i~~~g~v~~Lv~--lL~~-~~--------s~~~ 605 (685)
+.+ ...|.|...+..+. ....+..|+.+|+.++. . ++.....++ .+..+.. +.+. |. ++.+
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 555 37888888884332 23444555555555433 2 222221111 1111111 1111 10 2345
Q ss_pred HHHHHHHHHHHhccCcH-HHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015 606 KEYCVSLLLALCINGGA-NVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 606 ~e~a~~~L~~L~~~~~~-~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 664 (685)
.-.|+.+-.-|...-+. .+...+. ..++.|..+|.+.+..++-.|...|.+|-+..
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~~---~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLLE---EALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 55555444444433323 3343332 34999999999999999999988888885543
No 232
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.41 E-value=14 Score=42.86 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=17.9
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015 593 IMKILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 593 Lv~lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
++.+|... +-.++..+..+...|...
T Consensus 322 vLrvLss~-dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 322 VLRVLSSP-DLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHHHcCcc-cccHHHHHHHHHHhhhhh
Confidence 34445444 777888888888887765
No 233
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=89.10 E-value=1 Score=42.59 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=94.6
Q ss_pred cHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CcHH
Q 039015 463 GLDFIVDMVKK-GLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-GNHW 540 (685)
Q Consensus 463 ~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~ 540 (685)
.+..++..|.. ..+.++|..|+-++..+- +..+....+ -+-+.+-.++..++.+....+..++..|-... +...
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~--~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE--KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH--HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 44556666654 336788988888887773 444444433 12233333444444556777777777775433 4444
Q ss_pred HH-HhcCChHHHHHHhc-cCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChh-HHHHHHHHHH
Q 039015 541 RF-LAAGAVPLLLNLLT-SSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRA-GKEYCVSLLL 614 (685)
Q Consensus 541 ~i-v~~G~v~~Lv~lL~-~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~-~~e~a~~~L~ 614 (685)
.+ ...|..+.++.++. ...+..+...++.+|..-|.+...|..|.+. +++.|-++++.+.++. ++-.|+-+|.
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHh
Confidence 44 46889999999994 2567788888888888888888888888764 6787888886542444 5666655553
No 234
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=89.09 E-value=45 Score=37.72 Aligned_cols=271 Identities=14% Similarity=0.092 Sum_probs=162.7
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCH-HHHH-HhhcC-CCHHHHHHHHHHhhc-cc-----
Q 039015 380 LANFISDRLLEG-TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCI-PSLL-KLLSS-KDSSTQENAIAALLN-LS----- 449 (685)
Q Consensus 380 ~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i-p~Lv-~lL~s-~~~~~~~~A~~aL~n-Ls----- 449 (685)
....+++....+ ....+..++..+.+.+. +..-...+...++| -.++ .-++. ++..++..|+.+|.+ |-
T Consensus 134 lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce-s~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~n 212 (858)
T COG5215 134 LMEEMVRNVGDEQPVSGKCESLGICGYHCE-SEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGN 212 (858)
T ss_pred HHHHHHHhccccCchHhHHHHHHHHHHHhh-ccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555433 34578889999999886 43333444444433 2233 23443 567889999999987 32
Q ss_pred -cCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHH
Q 039015 450 -KHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALV 527 (685)
Q Consensus 450 -~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~ 527 (685)
.++.+|..++ ...++.-+.. +.+++..|...|..+-... +.-..+.+ .-........+++.++++...|+.
T Consensus 213 f~~E~erNy~m-----qvvceatq~~-d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~nd~va~qavE 285 (858)
T COG5215 213 FCYEEERNYFM-----QVVCEATQGN-DEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQNDEVAIQAVE 285 (858)
T ss_pred hcchhhhchhh-----eeeehhccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcchHHHHHHHH
Confidence 2233444443 2333444444 7888888888887764422 44445555 444555566778888888887776
Q ss_pred HHHHhcCCC---------------CcHH--HHHhcCChHHHHHHhcc-CC-----ChhHHHHHHHHHHHHhcChhcHHHH
Q 039015 528 AIFGLLMHS---------------GNHW--RFLAAGAVPLLLNLLTS-SD-----SEELITDSLAVLATLAEKLDGTIAI 584 (685)
Q Consensus 528 aL~nLs~~~---------------~n~~--~iv~~G~v~~Lv~lL~~-~~-----~~~~~~~al~~L~~La~~~~~~~~i 584 (685)
.-..+|... .|.. +..-+.++|.|+++|.. ++ +=.....|.++|...+.... ..|
T Consensus 286 fWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~i 363 (858)
T COG5215 286 FWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DKI 363 (858)
T ss_pred HHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hHh
Confidence 554444221 0222 22234589999999953 11 11234455556555554211 122
Q ss_pred HhcCChHHHHH-HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 585 LHHGALDMIMK-ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 585 ~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
++. |-..++ -+++. +-..+|.|+-++..+-..........++ +.++|.+..++.+..--++..++|.+..+..+
T Consensus 364 ~~p--Vl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~V--~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 364 MRP--VLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKIV--PQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred HHH--HHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhhH--HhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 221 222333 45555 7788999999999888765555555555 35688999988877777888888888888876
Q ss_pred hc
Q 039015 664 YE 665 (685)
Q Consensus 664 ~~ 665 (685)
-.
T Consensus 439 va 440 (858)
T COG5215 439 VA 440 (858)
T ss_pred HH
Confidence 43
No 235
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.98 E-value=0.073 Score=53.71 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=33.2
Q ss_pred CCccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCccc
Q 039015 279 DDFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERL 325 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l 325 (685)
.+..|.||++..+|.|.++|||. -|-.|=. ....||+||+.+
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-----rm~eCPICRqyi 341 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGK-----RMNECPICRQYI 341 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhcc-----ccccCchHHHHH
Confidence 37899999999999999999995 3666621 134799998865
No 236
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=88.94 E-value=16 Score=39.81 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc-C---CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHH
Q 039015 392 TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS-S---KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFI 467 (685)
Q Consensus 392 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~-s---~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~L 467 (685)
.+..-..|+..+..+..+.|..-..+.++|.++.++..+. . +..++...--.+|..|+.|..+.+.+.+.++++.+
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~ 201 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKL 201 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHH
Confidence 3456667888888888888888889999999999998777 3 45677777778889999999999999999999999
Q ss_pred HHHhcCC
Q 039015 468 VDMVKKG 474 (685)
Q Consensus 468 v~lL~~~ 474 (685)
++++.+.
T Consensus 202 f~if~s~ 208 (379)
T PF06025_consen 202 FEIFTSP 208 (379)
T ss_pred HHHhCCH
Confidence 9999765
No 237
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=88.94 E-value=1.7 Score=37.46 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=51.7
Q ss_pred cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 039015 461 SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLL 533 (685)
Q Consensus 461 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 533 (685)
.-.+++++..+... +..+|..|+.+|++++..-.....-.- ...++.|.+++.+.++.++. ++..|-+|-
T Consensus 26 ~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D~d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSADPDENVRS-AAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchhHHH-HHHHHHHHh
Confidence 45789999999988 999999999999999865432221111 45889999998887777664 556666653
No 238
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=88.89 E-value=6.5 Score=44.78 Aligned_cols=168 Identities=14% Similarity=0.066 Sum_probs=107.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHh---hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhc
Q 039015 385 SDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVE---VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVES 461 (685)
Q Consensus 385 v~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~---~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~ 461 (685)
...+..-+.+.+.-|+..||.+.++...+-..+-. ...+..++..+. .++.-+..++++|.|+-.++.+++.++..
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~ 628 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR 628 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34445567788999999999999865444333321 235555665554 56788999999999999998888888854
Q ss_pred -CcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc--hhHHHHhhcCCCcHHHHHHHhcc-----CCHHHHHHHHHHHHHhc
Q 039015 462 -GGLDFIVDMVKKGLKVEARQHAAATLFYIASI--EEYRKLIGENPEAIPALVDMVRD-----GTDRSKKNALVAIFGLL 533 (685)
Q Consensus 462 -g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~A~~aL~nLs 533 (685)
..+...+--.+.+.+..++...+.+.+|++.. ..+-+ .|..+.|...+.. .+.++.-.++.||.+|+
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 22222222233442455666555555666532 11111 3445555554432 12345667888999999
Q ss_pred CCCCcHHHHHhcCChHHHHHHhccC
Q 039015 534 MHSGNHWRFLAAGAVPLLLNLLTSS 558 (685)
Q Consensus 534 ~~~~n~~~iv~~G~v~~Lv~lL~~~ 558 (685)
..+.+..++...-.|..+++-++..
T Consensus 704 t~~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 704 TVDASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred cccHHHHHHHHhcCHHHHHHHHHHh
Confidence 9998888888877788888888543
No 239
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.76 E-value=0.47 Score=54.82 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=35.3
Q ss_pred CCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCc
Q 039015 279 DDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGE 323 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~ 323 (685)
..-.|..|...+.-|++- .|||.|.+.|++ .+...||.|..
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 346899999999999764 899999999987 55789999966
No 240
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.68 E-value=14 Score=38.87 Aligned_cols=190 Identities=16% Similarity=0.142 Sum_probs=118.6
Q ss_pred CCHHHHH-HhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh--HH
Q 039015 421 GCIPSLL-KLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE--YR 497 (685)
Q Consensus 421 G~ip~Lv-~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~ 497 (685)
|.+..|+ .-+.+.++.+++.|+.+|+-.+.-+.. ++ ...++.+.+.++.+ +.+++..|+.+++.+..... .-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a-~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LA-KEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HH-HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhc
Confidence 4444444 567788999999999999888866542 11 22367788888888 99999999999998864332 11
Q ss_pred HH-------hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCC--ChhHHHHHH
Q 039015 498 KL-------IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSD--SEELITDSL 568 (685)
Q Consensus 498 ~~-------i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~--~~~~~~~al 568 (685)
.. ... ...+..+.+.+.+.+++.+..|+..+..|-.++.... ...++..|+-+-.+.. +..-..+++
T Consensus 101 ~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDS-KSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 11 112 4577888888888899999999999999876665433 1223334444433322 223445555
Q ss_pred HHHH-HHhcChhcHHHHHhcCChHHHHHHhhcCC---Chh---HHHHHHHHHHHHhcc
Q 039015 569 AVLA-TLAEKLDGTIAILHHGALDMIMKILDSCT---SRA---GKEYCVSLLLALCIN 619 (685)
Q Consensus 569 ~~L~-~La~~~~~~~~i~~~g~v~~Lv~lL~~~~---s~~---~~e~a~~~L~~L~~~ 619 (685)
+... ..+.........+....+|.+..+.+... ++. .-...+..+..++..
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~ 234 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDP 234 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCCh
Confidence 5554 44655443344555566787777666531 111 123556666666653
No 241
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=88.61 E-value=0.3 Score=41.53 Aligned_cols=27 Identities=19% Similarity=0.635 Sum_probs=24.5
Q ss_pred cCcccccHHHHHHHHHcCCCCCCCCCcc
Q 039015 297 STGHTYDRASILKWFRAGNSTCPKTGER 324 (685)
Q Consensus 297 ~cghtfcr~ci~~~~~~~~~~CP~c~~~ 324 (685)
.|.|.|.-.||.+|++. ...||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 69999999999999998 7889999765
No 242
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=88.55 E-value=0.72 Score=40.35 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=28.9
Q ss_pred CCCCCCccCcCccccCCCceec--cCcccccHHHHH
Q 039015 275 GLTPDDFTCPISLEIMKDPVTL--STGHTYDRASIL 308 (685)
Q Consensus 275 ~~~~~~~~CpIc~~~m~dPv~~--~cghtfcr~ci~ 308 (685)
..+.++-.|++|++.+.++++. ||||.|...|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3677788899999999988754 999999999974
No 243
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.54 E-value=0.44 Score=50.71 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=27.6
Q ss_pred CccCcCccccCCCc---eeccCcccccHHHHHHHHHc
Q 039015 280 DFTCPISLEIMKDP---VTLSTGHTYDRASILKWFRA 313 (685)
Q Consensus 280 ~~~CpIc~~~m~dP---v~~~cghtfcr~ci~~~~~~ 313 (685)
-|.|.||++...-- +.++|+|.||++|...|+..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 59999999766542 34599999999999999973
No 244
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=88.43 E-value=6.3 Score=43.91 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=105.4
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCC---ChhHHHHHHHHHHHHhcChhcHH
Q 039015 506 AIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSD---SEELITDSLAVLATLAEKLDGTI 582 (685)
Q Consensus 506 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~La~~~~~~~ 582 (685)
....+.+++.+|+...+..|+..|..|+.+......++...++..|..++.++. ...+..-++.++.-+-.+.-..=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 456788899999999999999999999999999999999999999999995433 23455555555555544322110
Q ss_pred HHHhcCChHHHHHHhhcC-CChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015 583 AILHHGALDMIMKILDSC-TSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH 661 (685)
Q Consensus 583 ~i~~~g~v~~Lv~lL~~~-~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 661 (685)
..+...+|.....+.+.. -...+-..|++.|-++..++.. ..+.+.+ .--+..|...++.++.+...+|-++++.+-
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~-~~~~v~e-ev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT-LRQLVAE-EVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH-HHHHHHh-cCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 111222233333333211 1334556889999888877533 2333333 456889999999999999999999988764
Q ss_pred H
Q 039015 662 E 662 (685)
Q Consensus 662 ~ 662 (685)
.
T Consensus 242 ~ 242 (713)
T KOG2999|consen 242 R 242 (713)
T ss_pred h
Confidence 3
No 245
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=88.34 E-value=18 Score=36.84 Aligned_cols=197 Identities=18% Similarity=0.225 Sum_probs=117.5
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC---cc-
Q 039015 380 LANFISDRLL--EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH---CK- 453 (685)
Q Consensus 380 ~i~~Lv~~L~--s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~---~~- 453 (685)
.++.|+..|. ++.+-+|.+|..+|..+-. .+..+.+-+..+.+...+.+.+..++..+--- ..
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~ 136 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI 136 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc
Confidence 5788888874 4556677788888876641 23455555555555556666555555443110 00
Q ss_pred -hhHHH--------HhcCcHHHHHHHhcCCCCHHH-HHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHH
Q 039015 454 -SKSMV--------VESGGLDFIVDMVKKGLKVEA-RQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKK 523 (685)
Q Consensus 454 -~k~~i--------~~~g~i~~Lv~lL~~~~~~e~-~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 523 (685)
+.... ...+-+..+-..|.....+.. |. .++|+|- .+|. ..+|.+|++-+..++.-.+-
T Consensus 137 ~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry---~amF~LR-------n~g~-EeaI~al~~~l~~~Salfrh 205 (289)
T KOG0567|consen 137 ANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY---RAMFYLR-------NIGT-EEAINALIDGLADDSALFRH 205 (289)
T ss_pred cccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH---hhhhHhh-------ccCc-HHHHHHHHHhcccchHHHHH
Confidence 00000 111223333333332201111 22 2233331 1122 34678888888877777788
Q ss_pred HHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc-CCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCC
Q 039015 524 NALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS-SDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTS 602 (685)
Q Consensus 524 ~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s 602 (685)
.++.++..| ..--+||.|.+.|.. ..++.++..|+.+|..++.. ..++.|.+.+.+. .
T Consensus 206 EvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~-~ 264 (289)
T KOG0567|consen 206 EVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDE-E 264 (289)
T ss_pred HHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCc-H
Confidence 888888776 455678999998853 34688889999999888763 2467778888887 8
Q ss_pred hhHHHHHHHHHHHHhcc
Q 039015 603 RAGKEYCVSLLLALCIN 619 (685)
Q Consensus 603 ~~~~e~a~~~L~~L~~~ 619 (685)
+.+++.|..+|-.+-..
T Consensus 265 ~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 265 RVVRESCEVALDMLEYE 281 (289)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88999988888665543
No 246
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.33 E-value=0.29 Score=49.97 Aligned_cols=49 Identities=27% Similarity=0.472 Sum_probs=40.0
Q ss_pred CCCCCccCcCccccCC---CceeccCcccccHHHHHHHHHcC--CCCCCCCCcc
Q 039015 276 LTPDDFTCPISLEIMK---DPVTLSTGHTYDRASILKWFRAG--NSTCPKTGER 324 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~---dPv~~~cghtfcr~ci~~~~~~~--~~~CP~c~~~ 324 (685)
....-|.||+..+.-. .|+.+.|||..-...+...-++| .+.||.|...
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 4556699999888766 48999999999999998877766 5789999654
No 247
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=88.20 E-value=0.47 Score=49.60 Aligned_cols=61 Identities=16% Similarity=0.352 Sum_probs=47.6
Q ss_pred CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHH
Q 039015 276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDW 343 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~ 343 (685)
...+-+.||+|.+.|..|+.= .-||.-|..|=.+. ...||.|+.++.+ +.+..+...++..
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc---HHHHHHHHHHHhc
Confidence 456679999999999999754 57999999996432 6689999998873 3667777776654
No 248
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=88.18 E-value=0.18 Score=49.41 Aligned_cols=48 Identities=25% Similarity=0.513 Sum_probs=37.1
Q ss_pred CCccCcCcc-ccCCCcee--c--c-CcccccHHHHHHHHHcCCCCCC--CCCcccc
Q 039015 279 DDFTCPISL-EIMKDPVT--L--S-TGHTYDRASILKWFRAGNSTCP--KTGERLQ 326 (685)
Q Consensus 279 ~~~~CpIc~-~~m~dPv~--~--~-cghtfcr~ci~~~~~~~~~~CP--~c~~~l~ 326 (685)
.+-.||+|. +.+-+|-+ + | |-|..|-+|+.+.|..|...|| -|++-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 357899998 44445522 2 5 9999999999999999999999 5776554
No 249
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.94 E-value=8.9 Score=44.64 Aligned_cols=207 Identities=14% Similarity=0.135 Sum_probs=130.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH-HHhhcCCchhhHHHhhCCHHHHHHhhcCCCH-HHHHHHHHHhhccccCcch-hHH
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVR-LLTKSSIFNRSCLVEVGCIPSLLKLLSSKDS-STQENAIAALLNLSKHCKS-KSM 457 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~-~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~-~~~~~A~~aL~nLs~~~~~-k~~ 457 (685)
...|+++...+.++.+.++.++|. .+.. +..| ....++++.+.+..... .---.++.++.||+..+++ |..
T Consensus 506 ~~aLlrl~~~q~e~akl~~~~aL~~~i~f--~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~ 579 (748)
T KOG4151|consen 506 YEALLRLGQQQFEEAKLKWYHALAGKIDF--PGER----SYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQK 579 (748)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHhhhcCC--CCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHH
Confidence 445555555555566666555555 1111 1111 12345555555543221 2223678899999877654 777
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS 536 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 536 (685)
|...-+++.|-..+-.. ++-.+..++..+.||...+ -+...|++.....+.....+..........++.++..+....
T Consensus 580 i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~ 658 (748)
T KOG4151|consen 580 ILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVV 658 (748)
T ss_pred HHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcc
Confidence 88766666666666666 7888999999999998877 567777775567888887777766677777777777666655
Q ss_pred CcHHH-HHh-cCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHH
Q 039015 537 GNHWR-FLA-AGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMK 595 (685)
Q Consensus 537 ~n~~~-iv~-~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~ 595 (685)
+|+-. +.+ ......++.++ .+.+.+++...+.+..|+... .+....+.....++.+..
T Consensus 659 ~n~c~~~~~~~~~~e~~~~~i-~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 659 ENHCSRILELLEWLEILVRAI-QDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred hhhhhhHHHhhcchHHHHHhh-cCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHH
Confidence 54333 333 45567777787 677788888888888886543 333344555544444443
No 250
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.91 E-value=14 Score=43.58 Aligned_cols=223 Identities=11% Similarity=0.131 Sum_probs=138.7
Q ss_pred CCCHHHHHHHHHHhhccccCc-chhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHH
Q 039015 432 SKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPAL 510 (685)
Q Consensus 432 s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~L 510 (685)
+..+.....|.+++...+... .+...+ .-.+...+..+.....+-++..|..++..-+...- .....++++..|
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v---l~~~~p~ild~L 535 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV---LLSLQPMILDGL 535 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccCcee---ccccchHHHHHH
Confidence 355666667777776544322 222111 11233344444444356677777777776662221 112236788899
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc-CCChhHHHHHHHHHHHHhcChhcHHHHHhcCC
Q 039015 511 VDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS-SDSEELITDSLAVLATLAEKLDGTIAILHHGA 589 (685)
Q Consensus 511 v~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~ 589 (685)
.++....+.++...-..+|...+..+.......++.+.|.++.++.. .+++.+...+-.++..|.....+..-. ..--
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~~ 614 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QERL 614 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHHH
Confidence 99987777888888889999999999888888999999999998743 456777788888877776633322222 1224
Q ss_pred hHHHHHHhhcCC---ChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHH-hcCChHHHHHHHHHHHHHHH
Q 039015 590 LDMIMKILDSCT---SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLL-SQGSSRASKKASALIRILHE 662 (685)
Q Consensus 590 v~~Lv~lL~~~~---s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll-~~g~~~~k~~A~~lL~~l~~ 662 (685)
+|.++.+|.... .+....-|+-+|..+.++.++.....+.. -++|++...+ ++++...-+.+...|+.+-.
T Consensus 615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~--~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC--YAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH--HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 788888877530 24455567777777777766555444443 2355555544 44555566667666665533
No 251
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.79 E-value=17 Score=44.30 Aligned_cols=259 Identities=14% Similarity=0.104 Sum_probs=143.4
Q ss_pred CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC----cchhHHHHhcCcHHHH
Q 039015 392 TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH----CKSKSMVVESGGLDFI 467 (685)
Q Consensus 392 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~----~~~k~~i~~~g~i~~L 467 (685)
..+.+.+|+..|+.|+.... ....---++|.++.++.++.+.+|..|+.+|..+-.. +.+-..|.-.=.+|.|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 45678999999999986332 2233345799999999999999999999888665322 2333444445567777
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCch----hHHHH--------------hhc---------CCCcHHHHHH-HhccCCH
Q 039015 468 VDMVKKGLKVEARQHAAATLFYIASIE----EYRKL--------------IGE---------NPEAIPALVD-MVRDGTD 519 (685)
Q Consensus 468 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~----~~~~~--------------i~~---------~~g~i~~Lv~-lL~~~~~ 519 (685)
-+++......-+|..=|.-|.-|+... +.-.. ..+ -...|..+|. +|.+..+
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 777766313333333333333332111 00000 000 0012333333 3333334
Q ss_pred HHHHHHHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhh
Q 039015 520 RSKKNALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILD 598 (685)
Q Consensus 520 ~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~ 598 (685)
-+|..-+..|.-||..-+ .+ -..=+++.|+..| ++.+..++..-..-+.-++..-.-+ . ++..-+|.|.+-|.
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfL-NDkDw~LR~aFfdsI~gvsi~VG~r-s-~seyllPLl~Q~lt 666 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGKEK---SNDVILSHLITFL-NDKDWRLRGAFFDSIVGVSIFVGWR-S-VSEYLLPLLQQGLT 666 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHh-cCccHHHHHHHHhhccceEEEEeee-e-HHHHHHHHHHHhcc
Confidence 555555566766653211 00 0111467788888 6666666544333333333321111 0 23344788888787
Q ss_pred cCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015 599 SCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 599 ~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 664 (685)
++ .+.+...|+++|..||..+- .++.... .++.....++-.++.=+|+.+..++....+..
T Consensus 667 D~-EE~Viv~aL~~ls~Lik~~l--l~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 667 DG-EEAVIVSALGSLSILIKLGL--LRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred Cc-chhhHHHHHHHHHHHHHhcc--cchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 77 88999999999999998742 1111110 11334455666677778888777776665543
No 252
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=87.51 E-value=0.64 Score=30.82 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=25.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhcccc
Q 039015 423 IPSLLKLLSSKDSSTQENAIAALLNLSK 450 (685)
Q Consensus 423 ip~Lv~lL~s~~~~~~~~A~~aL~nLs~ 450 (685)
+|.+++++.+++++++..|+.+|.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999998864
No 253
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=87.48 E-value=25 Score=37.62 Aligned_cols=166 Identities=11% Similarity=0.044 Sum_probs=114.5
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhh-cCCchhhHHHhh-C-CHHHHHHhhcCC-----C--------HHHHHH
Q 039015 377 MKLLANFISDRLLEGTSEEKNKVAYEVRLLTK-SSIFNRSCLVEV-G-CIPSLLKLLSSK-----D--------SSTQEN 440 (685)
Q Consensus 377 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~-~~~~~r~~i~~~-G-~ip~Lv~lL~s~-----~--------~~~~~~ 440 (685)
....+..+-+.|++........+++.|..++. .+......+... + -.+.+.+++... + +.++.+
T Consensus 54 L~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~ 133 (330)
T PF11707_consen 54 LQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTN 133 (330)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHH
Confidence 34456777788888888888889999999887 443444445443 3 345566666331 1 288888
Q ss_pred HHHHhhccccCcc--hhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCch----hHHHHhhcCCCcHHHHHH
Q 039015 441 AIAALLNLSKHCK--SKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFY-IASIE----EYRKLIGENPEAIPALVD 512 (685)
Q Consensus 441 A~~aL~nLs~~~~--~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~~----~~~~~i~~~~g~i~~Lv~ 512 (685)
.+..+..+-.+.+ -+..+. ..+.+..+.+-|..+ +.++......+|.. +..++ ..|..+-. ..++..|+.
T Consensus 134 fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~ 211 (330)
T PF11707_consen 134 FIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLAS 211 (330)
T ss_pred HHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHH
Confidence 9887776655443 355555 567799999999987 89999988888874 43333 45556655 668888999
Q ss_pred HhccCCH----HHHHHHHHHHHHhcCCCCcHHHHHh
Q 039015 513 MVRDGTD----RSKKNALVAIFGLLMHSGNHWRFLA 544 (685)
Q Consensus 513 lL~~~~~----~~~~~A~~aL~nLs~~~~n~~~iv~ 544 (685)
+....++ .+...+-..|..+|.++.+..-.-+
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d 247 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPD 247 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHHhcCCCcccccCC
Confidence 8776555 6777888889999987765444433
No 254
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=87.43 E-value=20 Score=40.33 Aligned_cols=227 Identities=11% Similarity=0.060 Sum_probs=132.3
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-c-------------
Q 039015 388 LLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-K------------- 453 (685)
Q Consensus 388 L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~------------- 453 (685)
..+.+.+.+..|..+|..+..-....-....|.-......+.+++++.++...|+.--.-++..+ +
T Consensus 230 tq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~ 309 (858)
T COG5215 230 TQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPA 309 (858)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCch
Confidence 35567788888988888776433233334555555566667888888888888776442222111 0
Q ss_pred ---hhHHHHhcCcHHHHHHHhcC-C-----CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHH
Q 039015 454 ---SKSMVVESGGLDFIVDMVKK-G-----LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKN 524 (685)
Q Consensus 454 ---~k~~i~~~g~i~~Lv~lL~~-~-----~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 524 (685)
+-.+-.-++++|.|+.+|.+ | .+......|.+.|--.+.. ....|.+ + ++...=.-+++++-..++.
T Consensus 310 qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~--~gd~i~~-p-Vl~FvEqni~~~~w~nrea 385 (858)
T COG5215 310 QNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL--KGDKIMR-P-VLGFVEQNIRSESWANREA 385 (858)
T ss_pred hhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH--hhhHhHH-H-HHHHHHHhccCchhhhHHH
Confidence 11112235688999999976 2 1334455555555444332 2233333 2 3333333556777888888
Q ss_pred HHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH--HhhcCC
Q 039015 525 ALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK--ILDSCT 601 (685)
Q Consensus 525 A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~--lL~~~~ 601 (685)
|+.|+...-..+. .+..-+-..++|.+.+++ +++.--+.+.+++++..++.+- ...|--.|-++..+. ++..-.
T Consensus 386 avmAfGSvm~gp~~~~lT~~V~qalp~i~n~m-~D~~l~vk~ttAwc~g~iad~v--a~~i~p~~Hl~~~vsa~liGl~D 462 (858)
T COG5215 386 AVMAFGSVMHGPCEDCLTKIVPQALPGIENEM-SDSCLWVKSTTAWCFGAIADHV--AMIISPCGHLVLEVSASLIGLMD 462 (858)
T ss_pred HHHHhhhhhcCccHHHHHhhHHhhhHHHHHhc-ccceeehhhHHHHHHHHHHHHH--HHhcCccccccHHHHHHHhhhhc
Confidence 9999887643332 222223345788888888 5666677788888888887642 222322333433333 111111
Q ss_pred ChhHHHHHHHHHHHHhccCc
Q 039015 602 SRAGKEYCVSLLLALCINGG 621 (685)
Q Consensus 602 s~~~~e~a~~~L~~L~~~~~ 621 (685)
.|...-++.+...+|..+-.
T Consensus 463 ~p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 463 CPFRSINCSWRKENLVDHIA 482 (858)
T ss_pred cchHHhhhHHHHHhHHHhhh
Confidence 66777888888888876643
No 255
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.25 E-value=0.27 Score=54.78 Aligned_cols=41 Identities=29% Similarity=0.515 Sum_probs=33.4
Q ss_pred CCCCCccCcCccccCC----CceeccCcccccHHHHHHHHHcCCCCCC
Q 039015 276 LTPDDFTCPISLEIMK----DPVTLSTGHTYDRASILKWFRAGNSTCP 319 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~----dPv~~~cghtfcr~ci~~~~~~~~~~CP 319 (685)
.+-+-+.|+||...+. .||.+-||||.|+.|.+..+.. +||
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp 51 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP 51 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC
Confidence 4556689999976665 6999999999999999987654 677
No 256
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=87.12 E-value=1.1 Score=44.78 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhhccccCcchhHHHHhcC-------cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh-HHHHhhcCCCc
Q 039015 435 SSTQENAIAALLNLSKHCKSKSMVVESG-------GLDFIVDMVKKGLKVEARQHAAATLFYIASIEE-YRKLIGENPEA 506 (685)
Q Consensus 435 ~~~~~~A~~aL~nLs~~~~~k~~i~~~g-------~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~ 506 (685)
..-|..|+.+|+.|+..+.|-+.|..-+ .+..|+++|....+.-.|+.|+.+|.+|+..++ ....++...++
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 3578999999999999999987776433 344555556555488999999999999998874 44467766899
Q ss_pred HHHHHHHhccCC
Q 039015 507 IPALVDMVRDGT 518 (685)
Q Consensus 507 i~~Lv~lL~~~~ 518 (685)
|..|+..+.+..
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999997643
No 257
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.99 E-value=8.2 Score=38.23 Aligned_cols=193 Identities=19% Similarity=0.168 Sum_probs=118.9
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHH-------hhcC-----CCHHHHHHHHHHhhccccCcchh
Q 039015 389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLK-------LLSS-----KDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~-------lL~s-----~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
-.|++.++ |+.+|..=-+..++-.-.+-.. |....|++ +|+. ....-..+|+.+|.-++.+++.|
T Consensus 57 v~g~~kEq--aL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk 134 (315)
T COG5209 57 VVGNPKEQ--ALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETK 134 (315)
T ss_pred hcCCHHHH--HHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchh
Confidence 45666555 6666544333344433333333 44444443 3322 22344567888888999999999
Q ss_pred HHHHhcCcHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHH
Q 039015 456 SMVVESGGLDFIVDMVKKG----LKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI 529 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~----~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL 529 (685)
..++++..--.|-..|... .-.-.|..+.+++..|..++ +.-..+-. ..+||.+++++..|+.-.+..|+..+
T Consensus 135 ~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLlt-TeivPLcLrIme~gSElSktvaifI~ 213 (315)
T COG5209 135 KVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLT-TEIVPLCLRIMELGSELSKTVAIFIF 213 (315)
T ss_pred eeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHh-hhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999877655555555422 12345788999999998877 33334444 88999999999999988888888777
Q ss_pred HHhcCCCCcHHHHHh----cCChHH----HHHHhccCCChhHHHHHHHHHHHHhcChhcHHHH
Q 039015 530 FGLLMHSGNHWRFLA----AGAVPL----LLNLLTSSDSEELITDSLAVLATLAEKLDGTIAI 584 (685)
Q Consensus 530 ~nLs~~~~n~~~iv~----~G~v~~----Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i 584 (685)
..+-.++..-+.+.+ --+|.. ++.-+-+.....+...++.+-..|+..+..|..+
T Consensus 214 qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 214 QKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 777666654333322 112222 2222223345566677777777777777766654
No 258
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=86.70 E-value=0.86 Score=30.20 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=25.3
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 506 AIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 506 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
.+|.+++++.+++++++..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999998864
No 259
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.61 E-value=31 Score=34.87 Aligned_cols=130 Identities=15% Similarity=0.025 Sum_probs=80.1
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHH
Q 039015 389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIV 468 (685)
Q Consensus 389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv 468 (685)
+..+++.+...++.|..++.++..+...+ +..|..+...+....+--+...+..+...++--- +.+..++
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----~~L~~~L 80 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----PFLQPLL 80 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----HHHHHHH
Confidence 45678889999999999997541222222 3345555555555555556666666654433211 3344333
Q ss_pred HH-----h---c-CCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHh-ccCCHHHHHHHHHHHHHhc
Q 039015 469 DM-----V---K-KGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMV-RDGTDRSKKNALVAIFGLL 533 (685)
Q Consensus 469 ~l-----L---~-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs 533 (685)
.. . . .....+.....++.+..++....+ .. ...++.+..+| ++.++..+..|+.+|..||
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g-~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HG-VDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 33 1 1 111345555556777777766655 11 34788888888 7777888999999999998
No 260
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.57 E-value=17 Score=41.33 Aligned_cols=122 Identities=19% Similarity=0.220 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhHHHHhcCcHHHHH
Q 039015 390 EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIV 468 (685)
Q Consensus 390 s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~i~~Lv 468 (685)
.++..++.-|+.-|....+.-++..... |..+++|..+.|..++..|+..|-.++.+. +.-.+| +..|+
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~ 102 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLV 102 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHH
Confidence 4778889889999988888777766544 668999999999999999999999999874 344444 67899
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc---cCCHHHHHHHHHHHH
Q 039015 469 DMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR---DGTDRSKKNALVAIF 530 (685)
Q Consensus 469 ~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~A~~aL~ 530 (685)
++|... +......+-.+|..|-..+ .+.. +..|+.-+. ++++.++..++..|.
T Consensus 103 QlL~td-d~~E~~~v~~sL~~ll~~d-~k~t-------L~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 103 QLLQTD-DPVELDAVKNSLMSLLKQD-PKGT-------LTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHTT----HHHHHHHHHHHHHHHHH--HHHH-------HHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHhcc-cHHHHHHHHHHHHHHHhcC-cHHH-------HHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 999987 6555555555565553322 2332 333444443 567777888777664
No 261
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.47 E-value=18 Score=44.04 Aligned_cols=230 Identities=18% Similarity=0.199 Sum_probs=125.5
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh--CCHHHHHHhhcCCCHHHHHHHHHHhhccccCc--chhHHHHhcCcH
Q 039015 389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV--GCIPSLLKLLSSKDSSTQENAIAALLNLSKHC--KSKSMVVESGGL 464 (685)
Q Consensus 389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~--G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~--~~k~~i~~~g~i 464 (685)
++.+..+|.++.+.|..++.. +......... ..-..|.+-..+....++..++.+|..|-..- +....+. . .|
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I 740 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LI 740 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HH
Confidence 445788999999999999874 2222222211 11122333333445556666666665554322 2333332 2 24
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcC--CCcHHHHHHHhccC---C-HHHHHHHHHHHHHhcCCCCc
Q 039015 465 DFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGEN--PEAIPALVDMVRDG---T-DRSKKNALVAIFGLLMHSGN 538 (685)
Q Consensus 465 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--~g~i~~Lv~lL~~~---~-~~~~~~A~~aL~nLs~~~~n 538 (685)
+-++-.++.- +...|.+|-.+|..+..... ....|.+ ...|...+..+..| + ...+...+.++..+.....+
T Consensus 741 ~EvIL~~Ke~-n~~aR~~Af~lL~~i~~i~~-~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 741 PEVILSLKEV-NVKARRNAFALLVFIGAIQS-SLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHHHhcccc-cHHHHhhHHHHHHHHHHHHh-hhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444555 88999999999999873110 0011110 12566666666544 2 22222225555555433222
Q ss_pred HHHHHhcC----ChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHH
Q 039015 539 HWRFLAAG----AVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLL 613 (685)
Q Consensus 539 ~~~iv~~G----~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L 613 (685)
+++.+ .+..+...| .+.+..+...|++.+..+... |+..-.--...-++.+..+++.+ +...+-..-..|
T Consensus 819 ---~ld~~~l~~li~~V~~~L-~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 819 ---ILDDETLEKLISMVCLYL-ASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLL 893 (1176)
T ss_pred ---cccHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence 22333 334444455 577899999999999988764 44332221212366677777666 667777777777
Q ss_pred HHHhccCcHHHHHHH
Q 039015 614 LALCINGGANVVALL 628 (685)
Q Consensus 614 ~~L~~~~~~~~~~~l 628 (685)
-.|+...+.+..+.+
T Consensus 894 ekLirkfg~~eLe~~ 908 (1176)
T KOG1248|consen 894 EKLIRKFGAEELESF 908 (1176)
T ss_pred HHHHHHhCHHHHHhh
Confidence 777776554444433
No 262
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=86.46 E-value=26 Score=38.02 Aligned_cols=235 Identities=15% Similarity=0.173 Sum_probs=132.3
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCH-HHHHHHHHHhhccccCcchh
Q 039015 379 LLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDS-STQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 379 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~-~~~~~A~~aL~nLs~~~~~k 455 (685)
..+..++..|.+ .+...|+.++-.|..-+. ++.-|..+...|.+..+++.+.. ++. ...-.++.++.-|+.+..+-
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 347888888874 345678888888877776 77889999999999999998844 443 44445555666667666666
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHH-HHHHHhcCchhHHHHhhcCCCcHHHHHHHhc---------cCCHHHHHHH
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAA-ATLFYIASIEEYRKLIGENPEAIPALVDMVR---------DGTDRSKKNA 525 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa-~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---------~~~~~~~~~A 525 (685)
..+.+.+.+..++.++.-....+.....- .-=.+++. +.+ ..+..+..++. ......+.-|
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk-------~~~--~~~~~~~~~~~~~~~~~~~~~~~lsp~~la 170 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK-------VQQ--KSRSLCKELLSSGSSWKSPKPPELSPQTLA 170 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchhhhhhhhhhH-------HHH--HHHHHHHHHHhccccccccCCcccccccHH
Confidence 66667778888888887110000000000 00001110 000 01111111110 0112233345
Q ss_pred HHHHHHhc--------------C-CCCcHHHHHhcCChHHHHHHhcc----C-----------CChhHHHHHHHHHHHHh
Q 039015 526 LVAIFGLL--------------M-HSGNHWRFLAAGAVPLLLNLLTS----S-----------DSEELITDSLAVLATLA 575 (685)
Q Consensus 526 ~~aL~nLs--------------~-~~~n~~~iv~~G~v~~Lv~lL~~----~-----------~~~~~~~~al~~L~~La 575 (685)
+.+|-.++ . .+-.+..+..-|++..++.++.. . .+-.....++.+|-+..
T Consensus 171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T 250 (361)
T PF07814_consen 171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT 250 (361)
T ss_pred HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence 55555552 1 11246777888899999998841 0 01235567888888876
Q ss_pred c-ChhcHHHHHhcC--ChHHHHH-HhhcC--CChhHHHHHHHHHHHHhccCcHH
Q 039015 576 E-KLDGTIAILHHG--ALDMIMK-ILDSC--TSRAGKEYCVSLLLALCINGGAN 623 (685)
Q Consensus 576 ~-~~~~~~~i~~~g--~v~~Lv~-lL~~~--~s~~~~e~a~~~L~~L~~~~~~~ 623 (685)
. +.+++....... .++.+.. +++.. ..+.....++.+|.|++.+++..
T Consensus 251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~ 304 (361)
T PF07814_consen 251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSA 304 (361)
T ss_pred hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccc
Confidence 5 355555554433 2333333 44332 02333467899999999887543
No 263
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=86.11 E-value=1.9 Score=46.97 Aligned_cols=184 Identities=14% Similarity=0.135 Sum_probs=119.1
Q ss_pred CCHHHHHHHHHHhhccccCcchh-HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-----chh---HHHHh-hc
Q 039015 433 KDSSTQENAIAALLNLSKHCKSK-SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-----IEE---YRKLI-GE 502 (685)
Q Consensus 433 ~~~~~~~~A~~aL~nLs~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-----~~~---~~~~i-~~ 502 (685)
++.-+...|++++..+..|+..+ ..+.-..+...+...|... .-..|+.+++++.+++. .+. ..+.+ |.
T Consensus 403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ 481 (728)
T KOG4535|consen 403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL 481 (728)
T ss_pred HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH
Confidence 44456777888888888887664 4555677888888888776 67889999999999863 111 12222 11
Q ss_pred CCCcHHHHHHHhc---cCCHHHHHHHHHHHHHhcCCC----CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 039015 503 NPEAIPALVDMVR---DGTDRSKKNALVAIFGLLMHS----GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA 575 (685)
Q Consensus 503 ~~g~i~~Lv~lL~---~~~~~~~~~A~~aL~nLs~~~----~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La 575 (685)
.+..++..-. ..+++++.+|..+|.|++..- +-....+..|.+..++.-.-......++.+|+-++.||-
T Consensus 482 ---ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLf 558 (728)
T KOG4535|consen 482 ---LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLF 558 (728)
T ss_pred ---HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhh
Confidence 2333333221 234688889999999997421 111222333444444443323456889999999999999
Q ss_pred cChhcHHHH-HhcC-ChHHHHHHhhcCCChhHHHHHHHHHHHHhccC
Q 039015 576 EKLDGTIAI-LHHG-ALDMIMKILDSCTSRAGKEYCVSLLLALCING 620 (685)
Q Consensus 576 ~~~~~~~~i-~~~g-~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~ 620 (685)
+++.-+-+= --++ ..+.|..++.+..+-.++-+|+++|..-....
T Consensus 559 kn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re 605 (728)
T KOG4535|consen 559 KNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKRE 605 (728)
T ss_pred cCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcc
Confidence 987653221 1122 36888888887768899999999998766543
No 264
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.00 E-value=44 Score=38.93 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=67.4
Q ss_pred CCcHHHHHHH-hccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHH
Q 039015 504 PEAIPALVDM-VRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTI 582 (685)
Q Consensus 504 ~g~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~ 582 (685)
.++|..|++. +.+++++++..|+.+|.=++..+.+ ..+..|.+|..+.++.++-.++.+|...|.....+.
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 5678888887 5678899999999999777655443 256678888666788999888888887777655555
Q ss_pred HHHhcCChHHHHH-HhhcCCChhHHHHHHHHHHHH
Q 039015 583 AILHHGALDMIMK-ILDSCTSRAGKEYCVSLLLAL 616 (685)
Q Consensus 583 ~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~L 616 (685)
+| . |++ ++.+. ..-+++-|+-++..+
T Consensus 625 Ai------~-lLepl~~D~-~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 625 AI------N-LLEPLTSDP-VDFVRQGALIALAMI 651 (929)
T ss_pred HH------H-HHhhhhcCh-HHHHHHHHHHHHHHH
Confidence 54 1 233 44443 556666666665554
No 265
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=85.89 E-value=38 Score=40.25 Aligned_cols=227 Identities=14% Similarity=0.102 Sum_probs=136.5
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccCcchhHHHH--hcCcHHH
Q 039015 390 EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS-SKDSSTQENAIAALLNLSKHCKSKSMVV--ESGGLDF 466 (685)
Q Consensus 390 s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~~i~--~~g~i~~ 466 (685)
+..+..-.+|...+...++....+...+.. .+-..+..+. +..+-++..|+.++..-. ....+. ..+.++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~----~~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYC----KVKVLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhcc----CceeccccchHHHHH
Confidence 345555567777777666543333322211 1122233332 234556667777665554 222222 4788889
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc--cCCHHHHHHHHHHHHHhcCCCCcHHHHHh
Q 039015 467 IVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR--DGTDRSKKNALVAIFGLLMHSGNHWRFLA 544 (685)
Q Consensus 467 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~ 544 (685)
|.++.... +.++......+|...+..+.-...-.+ ....|..+.+.. +.+|.+...+-..+-.|+....|...+.+
T Consensus 535 L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~-skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASME-SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE 612 (1005)
T ss_pred HHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhh-cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH
Confidence 99988877 888888888999888776643333333 456676666553 34566666666666666654444444433
Q ss_pred cCChHHHHHHhccCC---ChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHHHHHHHHhcc
Q 039015 545 AGAVPLLLNLLTSSD---SEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 545 ~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
-.+|.|+..|.... ...+..-++.+|..+... +.--....-.-+.|++.+ .++++ ....-.++-.+|..+...
T Consensus 613 -~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsd-D~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 613 -RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSD-DHETLQNATECLRALISV 690 (1005)
T ss_pred -HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecC-ChHHHHhHHHHHHHHHhc
Confidence 36899999995322 367788888888866553 221111112235688888 56665 777888888888888877
Q ss_pred CcHHHHH
Q 039015 620 GGANVVA 626 (685)
Q Consensus 620 ~~~~~~~ 626 (685)
+.+++..
T Consensus 691 ~~eq~~t 697 (1005)
T KOG2274|consen 691 TLEQLLT 697 (1005)
T ss_pred CHHHHHh
Confidence 6555433
No 266
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=85.31 E-value=2 Score=38.41 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=53.2
Q ss_pred ChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015 547 AVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI 618 (685)
Q Consensus 547 ~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~ 618 (685)
++..|+++|..+.++....-|+-=|..++. .|.|+..+-+.|+=..++++|.+. ++.++..|+.++..+-.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 466799999544455566666666777766 588999888888888889999997 99999999999877654
No 267
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.23 E-value=84 Score=36.82 Aligned_cols=179 Identities=13% Similarity=0.133 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHh
Q 039015 392 TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMV 471 (685)
Q Consensus 392 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL 471 (685)
++..|.-.++.|+..+..++.-+.. .|..+..+|.+.++.+.-.|...|.+||.++..-..- ...++.++
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l~ 288 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA-----ASTYIDLL 288 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH-----HHHHHHHH
Confidence 4666777788888888755554444 4668889999999999999999999998766442111 12223333
Q ss_pred cCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHH
Q 039015 472 KKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLL 551 (685)
Q Consensus 472 ~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~L 551 (685)
-+..+..++.-..--|..|. ..-+.|. .|.+--.+.+|..++-++++.++...+.|+.... +.-+
T Consensus 289 ~kesdnnvklIvldrl~~l~---~~~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN----------vedi 353 (948)
T KOG1058|consen 289 VKESDNNVKLIVLDRLSELK---ALHEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN----------VEDI 353 (948)
T ss_pred HhccCcchhhhhHHHHHHHh---hhhHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc----------HHHH
Confidence 22212222222222222222 2222332 3466667778888888899989988888865443 2222
Q ss_pred HHHhc----------cCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcC
Q 039015 552 LNLLT----------SSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSC 600 (685)
Q Consensus 552 v~lL~----------~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~ 600 (685)
+.+|+ ++.+...+..-+..++..|.. ++... ..|+.|++.+.+.
T Consensus 354 v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aa-----tvV~~ll~fisD~ 408 (948)
T KOG1058|consen 354 VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAA-----TVVSLLLDFISDS 408 (948)
T ss_pred HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHH-----HHHHHHHHHhccC
Confidence 33332 122344455556666666543 33332 2356677766554
No 268
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=85.20 E-value=31 Score=40.91 Aligned_cols=192 Identities=17% Similarity=0.185 Sum_probs=125.3
Q ss_pred hhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc
Q 039015 375 GAMKLLANFISDRLL-EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK 453 (685)
Q Consensus 375 ~~~~~~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~ 453 (685)
...+..+..+.+.+. ...+.++..++..+.++++.- .......+.+|.+..++..+...+++.|+..+.++...-+
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~---~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL---ESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH---HHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 344555666666664 456677788888888888633 2377888999999999998888999999988887754322
Q ss_pred hhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 039015 454 SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLL 533 (685)
Q Consensus 454 ~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 533 (685)
... =...-..+.++...+.+ +...+...+.....|+..=+- ..+. ..-+++...+++....+++..++.=..-++
T Consensus 309 ~~~-d~~~~~~~~l~~~~~d~-~~~v~~~~~~~~~~L~~~~~~--~~~~-~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~ 383 (759)
T KOG0211|consen 309 DDD-DVVKSLTESLVQAVEDG-SWRVSYMVADKFSELSSAVGP--SATR-TQLVPPVSNLLKDEEWEVRYAIAKKVQKLA 383 (759)
T ss_pred Cch-hhhhhhhHHHHHHhcCh-hHHHHHHHhhhhhhHHHHhcc--ccCc-ccchhhHHHHhcchhhhhhHHhhcchHHHh
Confidence 211 12244577888888888 778887777777777542222 3444 556778888877655555554444333333
Q ss_pred --CCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 039015 534 --MHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA 575 (685)
Q Consensus 534 --~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La 575 (685)
.+.+....+....++|.+-.+. .+.+..+....+.....++
T Consensus 384 ~~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~ 426 (759)
T KOG0211|consen 384 CYLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLS 426 (759)
T ss_pred hhcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccC
Confidence 3334555666666677777776 5666666666665555553
No 269
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=85.08 E-value=16 Score=40.51 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=81.7
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CC--------cHHHHHhcC----ChHHHHHHhccCCChhHHHHHHHHHH
Q 039015 506 AIPALVDMVRDGTDRSKKNALVAIFGLLMH-SG--------NHWRFLAAG----AVPLLLNLLTSSDSEELITDSLAVLA 572 (685)
Q Consensus 506 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~--------n~~~iv~~G----~v~~Lv~lL~~~~~~~~~~~al~~L~ 572 (685)
.+..|+.+|.+ ++....|+.++.-|..+ ++ +...+.+.. ++|.|++-.. ..+...+...+.+|.
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~-~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK-EADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh-hcChhhHHHHHHHHH
Confidence 46677777765 55566778887777666 22 222233332 5677777763 344457788888888
Q ss_pred HHhcChhcHHHHHhcCC-hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHH
Q 039015 573 TLAEKLDGTIAILHHGA-LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSL 641 (685)
Q Consensus 573 ~La~~~~~~~~i~~~g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L 641 (685)
++..+-....-.-+.+. +|.|++-|... ++.++..++.+|..+....++-+...+. .+++.|+.+
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~i~~hl~---sLI~~LL~l 414 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPELISEHLS---SLIPRLLKL 414 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHHHHHHHH---HHHHHHHhc
Confidence 88775332222233333 78888888776 8889999999999999887444433332 345555543
No 270
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=84.98 E-value=0.27 Score=59.24 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=42.5
Q ss_pred CCCCCccCcCccccCC-CceeccCcccccHHHHHHHHHcCCCCCCCCCccc
Q 039015 276 LTPDDFTCPISLEIMK-DPVTLSTGHTYDRASILKWFRAGNSTCPKTGERL 325 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~-dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l 325 (685)
..-..+.|+||++.++ .-.+.-|||.||..|+..|... +..||+|....
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKSIK 1198 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhhhh
Confidence 5566789999999999 6778899999999999999997 78899997433
No 271
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=84.89 E-value=24 Score=36.36 Aligned_cols=136 Identities=21% Similarity=0.189 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhccccCcc--------hhHHHHhcCcHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCchh--HHHHh
Q 039015 435 SSTQENAIAALLNLSKHCK--------SKSMVVESGGLDFIVDMVKKGLK----VEARQHAAATLFYIASIEE--YRKLI 500 (685)
Q Consensus 435 ~~~~~~A~~aL~nLs~~~~--------~k~~i~~~g~i~~Lv~lL~~~~~----~e~~~~Aa~~L~~Ls~~~~--~~~~i 500 (685)
....+.++..|..|+..++ +|-.+.=-+.+|-+++.+..+ + ......+|..|..++.... +-..+
T Consensus 76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~-~~i~~~~~~~~~A~~La~~a~~~~~~~La~i 154 (262)
T PF14225_consen 76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDP-NPIQPDQECIEIAEALAQVAEAQGLPNLARI 154 (262)
T ss_pred CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhccc-ccccccHHHHHHHHHHHHHHHhCCCccHHHH
Confidence 4456666666666654432 344444456677788888777 4 2444566677777764321 11111
Q ss_pred h-----------------------c------CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHH
Q 039015 501 G-----------------------E------NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLL 551 (685)
Q Consensus 501 ~-----------------------~------~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~L 551 (685)
. + ....+-.|+++|.++.+..+...+..|+.|-.+-+.+.. ..++.+.+|
T Consensus 155 l~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispl 233 (262)
T PF14225_consen 155 LSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPL 233 (262)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHH
Confidence 0 0 134566788888899899999999999998877665433 566689999
Q ss_pred HHHhccCCChhHHHHHHHHHHHHhc
Q 039015 552 LNLLTSSDSEELITDSLAVLATLAE 576 (685)
Q Consensus 552 v~lL~~~~~~~~~~~al~~L~~La~ 576 (685)
+++|. .+...+|+.+|.+...
T Consensus 234 lrlL~----t~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 234 LRLLQ----TDLWMEALEVLDEIVT 254 (262)
T ss_pred HHHhC----CccHHHHHHHHHHHHh
Confidence 99994 3456778888876643
No 272
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=84.83 E-value=3 Score=41.23 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcC----CChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHH
Q 039015 561 EELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSC----TSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMG 636 (685)
Q Consensus 561 ~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~----~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~ 636 (685)
..-...|+.+|..++++|+.+..++++-.---+-..|... .-...+-.+++++..|..++++.+...+.. ..++|
T Consensus 114 snRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLlt-TeivP 192 (315)
T COG5209 114 SNRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLT-TEIVP 192 (315)
T ss_pred hhHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHh-hhHHH
Confidence 3455779999999999999999998866421222233322 123455689999999999998998888887 88999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHH
Q 039015 637 SLYSLLSQGSSRASKKASALIRIL 660 (685)
Q Consensus 637 ~L~~Ll~~g~~~~k~~A~~lL~~l 660 (685)
.++.++..|++--|.-|.-++..+
T Consensus 193 LcLrIme~gSElSktvaifI~qki 216 (315)
T COG5209 193 LCLRIMELGSELSKTVAIFIFQKI 216 (315)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999988777776665544
No 273
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=84.78 E-value=23 Score=39.22 Aligned_cols=185 Identities=22% Similarity=0.240 Sum_probs=115.3
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhh-cCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 380 LANFISDRL-LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL-SSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 380 ~i~~Lv~~L-~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL-~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
.+..++... .+.++..+..+++.+..+...-+. .... ...+..+..-+ ...+...+..++.++.-++ |..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~--~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----KaL 261 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD--DDDL-DEFLDSLLQSISSSEDSELRPQALEILIWIT-----KAL 261 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC--hhhH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----HHH
Confidence 456666665 444577888888888888743111 1111 12233333333 2334444555555444333 333
Q ss_pred HH-----hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc-hh-------------HHHHhhcCCCcHHHHHHHhccCC
Q 039015 458 VV-----ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI-EE-------------YRKLIGENPEAIPALVDMVRDGT 518 (685)
Q Consensus 458 i~-----~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~-------------~~~~i~~~~g~i~~Lv~lL~~~~ 518 (685)
++ ....+..++.+|.+ .+....|+..+.-|..+ ++ +|.++.. ..+|.|++-.+..+
T Consensus 262 v~R~~~~~~~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~ 336 (415)
T PF12460_consen 262 VMRGHPLATELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEAD 336 (415)
T ss_pred HHcCCchHHHHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhcC
Confidence 33 12346667777765 46677788887777665 33 2444442 36888888888777
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHh-cCChHHHHHHhccCCChhHHHHHHHHHHHHhcCh
Q 039015 519 DRSKKNALVAIFGLLMHSGNHWRFLA-AGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL 578 (685)
Q Consensus 519 ~~~~~~A~~aL~nLs~~~~n~~~iv~-~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~ 578 (685)
...+.+-+.||.++..+-+....+-+ ...+|.|++-| +-++.++...++.+|..+..+.
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL-~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSL-SLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcC
Confidence 77888999999999887664433333 34788889999 6677789999999999887754
No 274
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=84.59 E-value=3 Score=49.05 Aligned_cols=184 Identities=20% Similarity=0.192 Sum_probs=115.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHhhccccCcch---hH------HHHh----cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 039015 425 SLLKLLSSKDSSTQENAIAALLNLSKHCKS---KS------MVVE----SGGLDFIVDMVKKGLKVEARQHAAATLFYIA 491 (685)
Q Consensus 425 ~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~---k~------~i~~----~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls 491 (685)
.++.+|++ +++-..|+.++--+..|... |. .+.. ...+|.+++..... +...+.+=..+|.+.-
T Consensus 819 klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~-~~~~K~~yl~~LshVl 895 (1030)
T KOG1967|consen 819 KLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETA-PGSQKHNYLEALSHVL 895 (1030)
T ss_pred HHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccC-CccchhHHHHHHHHHH
Confidence 34455543 45555566666555444321 11 1112 46788888888855 6677777777787775
Q ss_pred CchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCC--hhHHHHHHH
Q 039015 492 SIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDS--EELITDSLA 569 (685)
Q Consensus 492 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~--~~~~~~al~ 569 (685)
.+-.....+-..+...|.|++.|.-++..++..++.+|..+....+.-..---.-.||.++.+=.+.++ ..+++.|+.
T Consensus 896 ~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALq 975 (1030)
T KOG1967|consen 896 TNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQ 975 (1030)
T ss_pred hcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 533333334444567888888888888888888888888776443322222222357777776522222 678899999
Q ss_pred HHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHH
Q 039015 570 VLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSL 612 (685)
Q Consensus 570 ~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~ 612 (685)
+|..|.. .|...-.-.+-..+..|...|.+. .+.+++.|+.+
T Consensus 976 cL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~t 1018 (1030)
T KOG1967|consen 976 CLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHH
Confidence 9999988 444333333334577788888876 77788888765
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.34 E-value=0.44 Score=50.08 Aligned_cols=46 Identities=15% Similarity=0.393 Sum_probs=37.3
Q ss_pred CCCCccCcCccccCC-Cce---eccCcccccHHHHHHHHH-cCCCCCCCCC
Q 039015 277 TPDDFTCPISLEIMK-DPV---TLSTGHTYDRASILKWFR-AGNSTCPKTG 322 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~-dPv---~~~cghtfcr~ci~~~~~-~~~~~CP~c~ 322 (685)
-+-++.|..|++.+- .|- .+||.|.|.-.|++.++. .+..+||.|+
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 345689999998775 333 359999999999999996 4678999998
No 276
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=84.17 E-value=38 Score=38.27 Aligned_cols=108 Identities=18% Similarity=0.026 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCCC----HHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh
Q 039015 380 LANFISDRLLEGT----SEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 380 ~i~~Lv~~L~s~~----~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
+.-.|++.+.++. ......-++.+..+.+.+++.+..+ .|.|-.-|++.-..++..++++++.++...-+-
T Consensus 224 a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~ 298 (898)
T COG5240 224 AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVGS 298 (898)
T ss_pred HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccCH
Confidence 4556666665432 1122233445555666555555444 455666676666788888999888887544221
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE 495 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~ 495 (685)
... ..++..|-.+|+.. ....|-.|..+|-.|+....
T Consensus 299 ~~~--~~~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 299 QFV--DQTVSSLRTFLKST-RVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHH--HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCC
Confidence 111 22455666667777 88889999999999986544
No 277
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=84.04 E-value=8.2 Score=42.11 Aligned_cols=185 Identities=14% Similarity=0.125 Sum_probs=114.7
Q ss_pred HHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH--------HhcCcHHHHHH
Q 039015 398 KVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV--------VESGGLDFIVD 469 (685)
Q Consensus 398 ~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i--------~~~g~i~~Lv~ 469 (685)
.|++.|..+....+..-..+.+.||+..++..|..+-..+.+..-..=.+-...++.+... ...+.++.|++
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 4677777777656566778889999999999886432221111000000000000111111 12333444444
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcC-ch----hHHHHhhcCCCcHHHHHHHhccCC---HHHHHHHHHHHHHhcCCCC-cHH
Q 039015 470 MVKKGLKVEARQHAAATLFYIAS-IE----EYRKLIGENPEAIPALVDMVRDGT---DRSKKNALVAIFGLLMHSG-NHW 540 (685)
Q Consensus 470 lL~~~~~~e~~~~Aa~~L~~Ls~-~~----~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~~~~-n~~ 540 (685)
++.+ +.. .. ..|..+-. ......|..++++.. +.+-..|+..+..+-.++. .-.
T Consensus 83 ~l~~----------------~~~~~~~~~~~lrnl~D~-s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~ 145 (379)
T PF06025_consen 83 FLSH----------------AMQHSGGFGDRLRNLIDS-SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFS 145 (379)
T ss_pred HHHH----------------HhccCCCcccccccccch-hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhH
Confidence 3322 222 11 22222221 345666667777654 5667788888888887665 556
Q ss_pred HHHhcCChHHHHHHhc-c--CCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhc
Q 039015 541 RFLAAGAVPLLLNLLT-S--SDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDS 599 (685)
Q Consensus 541 ~iv~~G~v~~Lv~lL~-~--~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~ 599 (685)
.+.++|.++.+++.+. . .++.++....-.+|..||-+..|.+.+.+.+.++.+++++.+
T Consensus 146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 6778999999999985 2 245777777888899999999999999999999999997764
No 278
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.54 E-value=49 Score=38.82 Aligned_cols=196 Identities=16% Similarity=0.150 Sum_probs=123.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHhhcc-ccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc
Q 039015 424 PSLLKLLSSKDSSTQENAIAALLNL-SKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE 502 (685)
Q Consensus 424 p~Lv~lL~s~~~~~~~~A~~aL~nL-s~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~ 502 (685)
.-|..+|++........|+.-+..+ +.+.+. ....+.+|...... +.|++...---|..-+..+.+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVask-n~EVKkLVyvYLlrYAEeqpdLALL-- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASK-NIEVKKLVYVYLLRYAEEQPDLALL-- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhcc-CHHHHHHHHHHHHHHhhcCCCceee--
Confidence 3567788887666666666655444 444331 23456777777777 8888876655444444433322222
Q ss_pred CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcH
Q 039015 503 NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGT 581 (685)
Q Consensus 503 ~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~ 581 (685)
-|..+=+-|+++++..+.-|+.+|..+ |..++.-=++-++-+.. .+..+.++..|+-++-.|-. +++.+
T Consensus 109 ---SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~-~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 109 ---SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAV-TDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred ---eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHh-cCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 377888889999999999888888766 32222111111112222 57778888888888877744 56655
Q ss_pred HHHHhcCChHHHHH-HhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHH
Q 039015 582 IAILHHGALDMIMK-ILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKK 652 (685)
Q Consensus 582 ~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~ 652 (685)
.++.+ +++ +|.+. ++.+...|+.+.-.+|-+. .+.+ .+-...|..++.+-++=++--
T Consensus 179 ~qL~e------~I~~LLaD~-splVvgsAv~AF~evCPer----ldLI---HknyrklC~ll~dvdeWgQvv 236 (968)
T KOG1060|consen 179 DQLEE------VIKKLLADR-SPLVVGSAVMAFEEVCPER----LDLI---HKNYRKLCRLLPDVDEWGQVV 236 (968)
T ss_pred HHHHH------HHHHHhcCC-CCcchhHHHHHHHHhchhH----HHHh---hHHHHHHHhhccchhhhhHHH
Confidence 55543 444 78887 9999999999999998652 2333 233778888887766555543
No 279
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=83.30 E-value=4.1 Score=33.12 Aligned_cols=68 Identities=19% Similarity=0.119 Sum_probs=59.5
Q ss_pred HHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCc
Q 039015 438 QENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEA 506 (685)
Q Consensus 438 ~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~ 506 (685)
...|++++.++...+.+-..+.+.+.++.++++..+.....+|..|..+|.-++...+..+.+.+ .|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~-~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE-LGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH-cCC
Confidence 46789999999998888888888899999999999776889999999999999999988888766 553
No 280
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=83.17 E-value=21 Score=37.52 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=109.6
Q ss_pred HHHHHH-HHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc-Ccch-h-
Q 039015 380 LANFIS-DRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSK-HCKS-K- 455 (685)
Q Consensus 380 ~i~~Lv-~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~-~~~~-k- 455 (685)
.+..|+ ..+.+.++.+|..|+++|...+--+. . ++. ..++.+...+..++..++..|+.++..+.. +... -
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~-~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---E-LAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---H-HHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344444 67788999999999999999987443 2 221 237778888877899999999999987752 2211 1
Q ss_pred ------HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccC----CHHHHHHH
Q 039015 456 ------SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDG----TDRSKKNA 525 (685)
Q Consensus 456 ------~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~A 525 (685)
........+..+...|.+. +++++..|+.-+..|-..+.... . +.++..|+-+.-++ +.+.+..-
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~-~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---P-PKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---H-HHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 1123456788888888888 88999999999988765543222 1 33455555544332 24444433
Q ss_pred HHHHHHhcCCCCcHHHHHhcCChHHHHHHhc
Q 039015 526 LVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT 556 (685)
Q Consensus 526 ~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~ 556 (685)
...+-..+......+..+..+.++.+-.+..
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3344455655555566677777888777774
No 281
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.09 E-value=0.44 Score=54.43 Aligned_cols=64 Identities=22% Similarity=0.445 Sum_probs=47.7
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHHHc--CCCCCCCCCccccCCCCcccHHHHhhHH
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA--GNSTCPKTGERLQSKELLVNLVLKRIIQ 341 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~--~~~~CP~c~~~l~~~~l~~n~~l~~~i~ 341 (685)
.....||||.....+|+.+.|-|.||+.|+-.-|.. +...||+|+..+......--..-..+++
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vq 84 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSK 84 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHH
Confidence 346899999999999999999999999999876654 3568999987665544433333334444
No 282
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=82.84 E-value=4.2 Score=40.80 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHhcChhcHHHHHhcCC---hH----HHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCc
Q 039015 562 ELITDSLAVLATLAEKLDGTIAILHHGA---LD----MIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSL 634 (685)
Q Consensus 562 ~~~~~al~~L~~La~~~~~~~~i~~~g~---v~----~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~ 634 (685)
.-+.-|+.+|+.|+-.+.+.+.|+..+- +. .|++++....++..+|.|+.+|.+||..+..-++. +....+.
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~-iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARA-IAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHH-HHHhhch
Confidence 3467799999999999999999988875 33 33444443337889999999999999987554444 4444788
Q ss_pred HHHHHHHHhcCChHHH
Q 039015 635 MGSLYSLLSQGSSRAS 650 (685)
Q Consensus 635 i~~L~~Ll~~g~~~~k 650 (685)
+..|+.++.++...+.
T Consensus 218 i~~Li~FiE~a~~~~~ 233 (257)
T PF12031_consen 218 ISHLIAFIEDAEQNAH 233 (257)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999987654443
No 283
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=82.71 E-value=0.82 Score=44.93 Aligned_cols=59 Identities=19% Similarity=0.343 Sum_probs=46.3
Q ss_pred CccCcCccccCCCceec-cCcccccHHHHHHHHHc-CCCCCCC--CCccccCCCCcccHHHHh
Q 039015 280 DFTCPISLEIMKDPVTL-STGHTYDRASILKWFRA-GNSTCPK--TGERLQSKELLVNLVLKR 338 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~-~~~~CP~--c~~~l~~~~l~~n~~l~~ 338 (685)
+.+|||......-|++. .|.|.|++..|.+++.. ....||. |.+....+.++-++.|..
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~ 251 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEK 251 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHH
Confidence 47999999999999875 79999999999999873 2557886 777776666666655543
No 284
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=81.69 E-value=17 Score=37.45 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhC--CHHHHHHhhcC----CCHHHHHHHHHHhhccccCcch
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVG--CIPSLLKLLSS----KDSSTQENAIAALLNLSKHCKS 454 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G--~ip~Lv~lL~s----~~~~~~~~A~~aL~nLs~~~~~ 454 (685)
+..+.+.+.+=+.+.+.-++..+|.++. ++..-..+...+ ....+..++.. .....+-.+++++.|+..+..+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~ 143 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG 143 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence 4455555554455667888888988886 545555555443 34555555433 4677888999999999999999
Q ss_pred hHHHHhc-C-cHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCchhHHHHhhcC--CCcHHHHHHHhcc--CCHHHHHHH
Q 039015 455 KSMVVES-G-GLDFIVDMVKKGL---KVEARQHAAATLFYIASIEEYRKLIGEN--PEAIPALVDMVRD--GTDRSKKNA 525 (685)
Q Consensus 455 k~~i~~~-g-~i~~Lv~lL~~~~---~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--~g~i~~Lv~lL~~--~~~~~~~~A 525 (685)
+..+.+. + .+-..+..+.... +..++..++.+++|+|..--.... ..+ ...+..+++.+.. .++++.-.+
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~-~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRS-DEEWQSELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS--CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 9988854 3 3444433333332 467888888889999764321110 110 1245566663332 578899999
Q ss_pred HHHHHHhcCCCCcHHHHHhc
Q 039015 526 LVAIFGLLMHSGNHWRFLAA 545 (685)
Q Consensus 526 ~~aL~nLs~~~~n~~~iv~~ 545 (685)
+.||.+|...+.......+.
T Consensus 223 LvAlGtL~~~~~~~~~~~~~ 242 (268)
T PF08324_consen 223 LVALGTLLSSSDSAKQLAKS 242 (268)
T ss_dssp HHHHHHHHCCSHHHHHHCCC
T ss_pred HHHHHHHhccChhHHHHHHH
Confidence 99999999766666655553
No 285
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=81.24 E-value=88 Score=34.07 Aligned_cols=157 Identities=19% Similarity=0.198 Sum_probs=95.4
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhh--cC--------CCHHHHHHHHHHhhcc
Q 039015 380 LANFISDRLLEGT-SEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL--SS--------KDSSTQENAIAALLNL 448 (685)
Q Consensus 380 ~i~~Lv~~L~s~~-~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL--~s--------~~~~~~~~A~~aL~nL 448 (685)
.-..+...|..+- ..-+...+..++.|++ +...-..+...-.+..|+.+- ++ .|..+...|+.+|+|+
T Consensus 46 L~e~i~~Vle~~~p~t~~v~~LetvrILSR-dk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNl 124 (532)
T KOG4464|consen 46 LGERIFEVLENGEPLTHRVVCLETVRILSR-DKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNL 124 (532)
T ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhc-cccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHH
Confidence 3455566666664 4456677888888886 322222222111122232221 11 3557888999999999
Q ss_pred ccCcch-hHHHHhcCcHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccC-----
Q 039015 449 SKHCKS-KSMVVESGGLDFIVDMVKKG----LKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDG----- 517 (685)
Q Consensus 449 s~~~~~-k~~i~~~g~i~~Lv~lL~~~----~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~----- 517 (685)
..+... +....+......+.+.+... ........=...||-|.... +.|..+....++++.+.++|.+.
T Consensus 125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgids 204 (532)
T KOG4464|consen 125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDS 204 (532)
T ss_pred HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCC
Confidence 988754 77777877777777765421 12344555566777775433 66666655588999999998631
Q ss_pred ----CH---HH---HHHHHHHHHHhcCCCC
Q 039015 518 ----TD---RS---KKNALVAIFGLLMHSG 537 (685)
Q Consensus 518 ----~~---~~---~~~A~~aL~nLs~~~~ 537 (685)
++ +- -..++.++||+..+..
T Consensus 205 e~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 205 EINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 11 22 2357788999986543
No 286
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=81.14 E-value=44 Score=41.08 Aligned_cols=228 Identities=13% Similarity=0.149 Sum_probs=128.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC---CchhhHHHhhCCHHHHHHhhcCCCHH-HHHHHHHHhhcccc----
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSS---IFNRSCLVEVGCIPSLLKLLSSKDSS-TQENAIAALLNLSK---- 450 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~---~~~r~~i~~~G~ip~Lv~lL~s~~~~-~~~~A~~aL~nLs~---- 450 (685)
..++.++..+..+..++|..|+.+|..+...- +..-..+.-.=..|.|-.++.+.+.. ++..=+..|..|+.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 45788888888888899999998887654211 22222333334567777777663322 11111111111111
Q ss_pred --------------Ccchh-HHHH-----h----cCcHHH-HHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc---
Q 039015 451 --------------HCKSK-SMVV-----E----SGGLDF-IVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE--- 502 (685)
Q Consensus 451 --------------~~~~k-~~i~-----~----~g~i~~-Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~--- 502 (685)
++.|- .... + ...|+. ++.+|... .+-++..-...|.-| +..+|+
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~L------C~FFGk~ks 614 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS-PPIVKRALLESIIPL------CVFFGKEKS 614 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHH------HHHhhhccc
Confidence 11111 0000 0 111222 22333333 445555444444444 333333
Q ss_pred CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHH
Q 039015 503 NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTI 582 (685)
Q Consensus 503 ~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~ 582 (685)
+.=.++.|+..|.+.+...+..=-..|..+|.+-+-+ -++.+.+|.|.+-| +|..+.+...|+.+|..|+...--+.
T Consensus 615 ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~l-tD~EE~Viv~aL~~ls~Lik~~ll~K 691 (1431)
T KOG1240|consen 615 NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGL-TDGEEAVIVSALGSLSILIKLGLLRK 691 (1431)
T ss_pred ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhc-cCcchhhHHHHHHHHHHHHHhcccch
Confidence 2336778888887777666654445555555443322 36778899999999 78889999999999999988543332
Q ss_pred H-HHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015 583 A-ILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 583 ~-i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
. +.+ .++...-+|-+. +..++..++.++......
T Consensus 692 ~~v~~--i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 692 PAVKD--ILQDVLPLLCHP-NLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHH--HHHhhhhheeCc-hHHHHHHHHHHHHHHHhh
Confidence 2 221 123333355555 999999999999888764
No 287
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=81.01 E-value=31 Score=40.85 Aligned_cols=93 Identities=26% Similarity=0.314 Sum_probs=68.4
Q ss_pred HHHHhcC-CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChH--HHHHHhhcCCChh
Q 039015 528 AIFGLLM-HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALD--MIMKILDSCTSRA 604 (685)
Q Consensus 528 aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~--~Lv~lL~~~~s~~ 604 (685)
+|+++.. .++++..+++.|++..+...+..-...++...++++|.+++...+.+........+. ..-.++....+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 8888885 456999999999999999999766778999999999999999765555432222222 2333454442336
Q ss_pred HHHHHHHHHHHHhccC
Q 039015 605 GKEYCVSLLLALCING 620 (685)
Q Consensus 605 ~~e~a~~~L~~L~~~~ 620 (685)
.-.+|+++|..+..++
T Consensus 574 rsY~~~siLa~ll~~~ 589 (699)
T KOG3665|consen 574 RSYNAASILALLLSDS 589 (699)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 6778999999888764
No 288
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=79.93 E-value=79 Score=38.33 Aligned_cols=146 Identities=17% Similarity=0.229 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhccCcchhHhHHhhhHHHHHHHHHHHHHHHHhhccCCccc--cCcHHHHHHHHHHHHHHH---hhhc
Q 039015 91 HLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAI--DVSSEVKELVDLVMRQAR---KAIF 165 (685)
Q Consensus 91 ~~~l~~ak~Ll~~c~~~~Sklyll~~~~~i~~~f~~~~~~l~~~L~~lP~~~~--~~s~~v~e~v~~l~~q~~---~a~~ 165 (685)
...|+..|.+++.=- -|--|++|+.-+.+ +.+...+ ++|..||...- .||.+.++||..+.+++. ||--
T Consensus 1014 K~QMDaIKqmIekKv----~L~~L~qCqdALeK-qnIa~AL-~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~ 1087 (1439)
T PF12252_consen 1014 KAQMDAIKQMIEKKV----VLQALTQCQDALEK-QNIAGAL-QALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVV 1087 (1439)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHh-hhHHHHH-HHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566677766422 22234455443332 3333333 45777776532 199999999999987744 3332
Q ss_pred cCCchh-hHHHHHHHHHH-------hcccCCCCCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 039015 166 ETDPDD-KRVLNDVIRIL-------GRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELAL 237 (685)
Q Consensus 166 ~~~~~~-~~~~~~~~~~l-------~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~ 237 (685)
..-..| +..+..-..++ ..+++....+.+..+.... ....|++|+..|+.|+.+...+. ++-+..-
T Consensus 1088 TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia-----~lnnlqqElklLRnEK~Rmh~~~-dkVDFSD 1161 (1439)
T PF12252_consen 1088 TPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIA-----NLNNLQQELKLLRNEKIRMHSGT-DKVDFSD 1161 (1439)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH-----HHHHHHHHHHHHHhHHHhhccCC-CcccHHH
Confidence 222222 22222222222 1123334445555553332 34577899999999885444443 4455566
Q ss_pred HHHHHHHHhhh
Q 039015 238 LSSLMGFLSYC 248 (685)
Q Consensus 238 l~~l~~ll~~~ 248 (685)
++.|-.-|...
T Consensus 1162 IEkLE~qLq~~ 1172 (1439)
T PF12252_consen 1162 IEKLEKQLQVI 1172 (1439)
T ss_pred HHHHHHHHHHh
Confidence 66666555533
No 289
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=79.57 E-value=28 Score=40.52 Aligned_cols=218 Identities=19% Similarity=0.204 Sum_probs=129.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc--chhH-H
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC--KSKS-M 457 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~--~~k~-~ 457 (685)
..++...+++|....++.|+.. +...++ +.....+..|+.+.......-...++.+|..|-++. ++|. .
T Consensus 198 ~k~l~siiSsGT~~DkitA~~L---lvqesP-----vh~lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKLk 269 (988)
T KOG2038|consen 198 AKWLYSIISSGTLTDKITAMTL---LVQESP-----VHNLKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKLK 269 (988)
T ss_pred HHHHHHHHhcCcchhhhHHHHH---hhcccc-----hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhhH
Confidence 4667777888888777766543 443344 444455778888887766666667777777666553 2233 2
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 537 (685)
.+.......|- +. ...-+..+.| ...+..+....+ .|..|..+....=+.++..|+.++++|..+.+
T Consensus 270 ~f~qrp~~~l~----~~-~~~~k~Ll~W-----yfE~~LK~ly~r---fievLe~lS~D~L~~vk~raL~ti~~lL~~kP 336 (988)
T KOG2038|consen 270 YFSQRPLLELT----NK-RLRDKILLMW-----YFEHELKILYFR---FIEVLEELSKDPLEEVKKRALKTIYDLLTNKP 336 (988)
T ss_pred HHhhChhhhcc----cc-ccccceehHH-----HHHHHHHHHHHH---HHHHHHHHccccHHHHHHHHHHHHHHHHhCCc
Confidence 22221111111 11 1111122222 233455666655 78888888777678999999999999988766
Q ss_pred cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH-hcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHHHHHHH
Q 039015 538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATL-AEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCVSLLLA 615 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L-a~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~ 615 (685)
..... .+..||+-| .+++..+...|.-.|.+| +.||..+..+.+ .+.. +++...+.+.+-+|+..|.+
T Consensus 337 EqE~~----LL~~lVNKl-GDpqnKiaskAsylL~~L~~~HPnMK~Vvi~-----EIer~~FRpn~~~ra~Yyav~fLnQ 406 (988)
T KOG2038|consen 337 EQENN----LLVLLVNKL-GDPQNKIASKASYLLEGLLAKHPNMKIVVID-----EIERLAFRPNVSERAHYYAVIFLNQ 406 (988)
T ss_pred HHHHH----HHHHHHHhc-CCcchhhhhhHHHHHHHHHhhCCcceeehHH-----HHHHHHcccCccccceeehhhhhhh
Confidence 44332 245678888 555555666666666655 677776655443 3444 45544477788889999887
Q ss_pred Hhc-cCcHHHHHHHH
Q 039015 616 LCI-NGGANVVALLV 629 (685)
Q Consensus 616 L~~-~~~~~~~~~l~ 629 (685)
+.. +.+..+...++
T Consensus 407 ~~Lshke~dvAnrLi 421 (988)
T KOG2038|consen 407 MKLSHKESDVANRLI 421 (988)
T ss_pred hHhccchHHHHHHHH
Confidence 664 33344444443
No 290
>PRK14707 hypothetical protein; Provisional
Probab=79.50 E-value=1.4e+02 Score=39.35 Aligned_cols=266 Identities=14% Similarity=0.072 Sum_probs=143.0
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchhHH
Q 039015 381 ANFISDRLLE--GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 381 i~~Lv~~L~s--~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
+..|++.++. ++.+-+..+......++. ++..|..+ ..-+|-.++.-++. ++.....+|+..|...-.+++....
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~ 242 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRN 242 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHH
Confidence 3444555432 344444444444455554 44445444 44557777776665 5555566666666554444444333
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHH-HhcCC
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLF-YIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF-GLLMH 535 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~-~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~-nLs~~ 535 (685)
-++.-.+...+.-|.+=.+..+..+|+..|. .|+.+...+..+.. .++-..|=.+-+-.+..+...|+.+|. .|..+
T Consensus 243 ~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~-q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d 321 (2710)
T PRK14707 243 ELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDP-INVTQALNALSKWADLPVCAEAAIALAERLADD 321 (2710)
T ss_pred hCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCH-HHHHHHHhhhhcCCCchHHHHHHHHHHHHHhcc
Confidence 3455555556666654325556666666654 56666677777754 333333333334455555555554444 44443
Q ss_pred CCcHHHHHhcCChHHHHHHhccCCChh-HHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015 536 SGNHWRFLAAGAVPLLLNLLTSSDSEE-LITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL 614 (685)
Q Consensus 536 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~-~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~ 614 (685)
.+-+ +-.+.-.+...++-|..=++.. ..+.|..+-..|+.+++-+..+ +.-++..++.-+...+...+...|+..|.
T Consensus 322 ~~l~-~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA 399 (2710)
T PRK14707 322 PELC-KALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-EPQGVSSVLNALSKWPDTPVCAAAASALA 399 (2710)
T ss_pred Hhhh-hccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-chhHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 3333 4445556677777774334444 4444555555777777766655 33356667775544435566666666665
Q ss_pred HHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHH
Q 039015 615 ALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKA 653 (685)
Q Consensus 615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A 653 (685)
.=..++ ....+.+-. .|+-..|-.|.+=++..+.+.|
T Consensus 400 ~~l~~d-~~l~~~~~~-Q~van~lnalsKWPd~~~C~~a 436 (2710)
T PRK14707 400 EHVVDD-LELRKGLDP-QGVSNALNALAKWPDLPICGQA 436 (2710)
T ss_pred HHhccC-hhhhhhcch-hhHHHHHHHhhcCCcchhHHHH
Confidence 433332 555666654 5666666666655555444433
No 291
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.11 E-value=1.4 Score=46.39 Aligned_cols=52 Identities=29% Similarity=0.631 Sum_probs=44.0
Q ss_pred CccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcc
Q 039015 280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLV 332 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~ 332 (685)
...|.+.+-.+.+||.+.-|..|+...|..|++. +.+-|.+++++...++++
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCcccccccee
Confidence 4689999999999999999999999999999997 666677777776666554
No 292
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=79.07 E-value=58 Score=38.76 Aligned_cols=266 Identities=14% Similarity=0.103 Sum_probs=150.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-CchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSS-IFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV 459 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 459 (685)
++.....++....+.+..++.....++... ...+..+.....+|.+-.+..+.+..++...+....+++---. +..-+
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti 435 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI 435 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc
Confidence 344455566566666666666666666422 2345666667778888888888888888777776666642211 11111
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN 538 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 538 (685)
.-.++.+...++.. .++++.+-...+..+-... ........ ...+|.++.+-.....+.+...+..+..++....
T Consensus 436 -~~llp~~~~~l~de-~~~V~lnli~~ls~~~~v~~v~g~~~~s-~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~- 511 (759)
T KOG0211|consen 436 -SELLPLLIGNLKDE-DPIVRLNLIDKLSLLEEVNDVIGISTVS-NSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG- 511 (759)
T ss_pred -cccChhhhhhcchh-hHHHHHhhHHHHHHHHhccCcccchhhh-hhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-
Confidence 22345555555555 6777777766664443322 23333333 5567888888766667888888888888876554
Q ss_pred HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcC--CChhHHHHHHHHHHHH
Q 039015 539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSC--TSRAGKEYCVSLLLAL 616 (685)
Q Consensus 539 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~--~s~~~~e~a~~~L~~L 616 (685)
..+.+....+.+..-| .+.--.+++.|+..|..++..-. ...- ....++.++.+...+ ..+...-.++..|..+
T Consensus 512 -~~~~~~~~~~l~~~~l-~d~v~~Ir~~aa~~l~~l~~~~G-~~w~-~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v 587 (759)
T KOG0211|consen 512 -VEFFDEKLAELLRTWL-PDHVYSIREAAARNLPALVETFG-SEWA-RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEV 587 (759)
T ss_pred -hHHhhHHHHHHHHhhh-hhhHHHHHHHHHHHhHHHHHHhC-cchh-HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHH
Confidence 3333332223333333 33445677888887777766322 2211 112345555533332 1223333455544444
Q ss_pred hccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 617 CINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 617 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
+.. +-..+. ++|.+..+..++.+.+|-+++..|..+-..
T Consensus 588 ~g~--ei~~~~------Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 588 LGQ--EITCED------LLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred hcc--HHHHHH------HhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 443 322222 367888888888888887777777666553
No 293
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.99 E-value=18 Score=42.53 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHH
Q 039015 433 KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVD 512 (685)
Q Consensus 433 ~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ 512 (685)
+-+.++-.|+..|..+....+-+..+...+++......|++. +.-+-.+|+..+..||... . ...+|-|.+
T Consensus 739 ~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcevy-------~-e~il~dL~e 809 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDE-DSYVYLNAIRGVVSLCEVY-------P-EDILPDLSE 809 (982)
T ss_pred CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhccc-CceeeHHHHHHHHHHHHhc-------c-hhhHHHHHH
Confidence 445677788888888887766677777888999999999887 6777777777666665431 1 345666666
Q ss_pred H-hccC---CHHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcH--HHHH
Q 039015 513 M-VRDG---TDRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGT--IAIL 585 (685)
Q Consensus 513 l-L~~~---~~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~--~~i~ 585 (685)
- .... .++.+-..-.|+.++.... +-..+-.+ -.+...+..+ .+++...+..+++.|++|+.-...+ ..+.
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gv-repd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ 887 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGV-REPDHEFRASSLANLGQLCQLLAFQVSDFFH 887 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhc-CCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence 3 2211 1233333336777765432 22222222 2344455555 3556677888999999998743321 1221
Q ss_pred hcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHH
Q 039015 586 HHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALL 628 (685)
Q Consensus 586 ~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l 628 (685)
..+..++.+.+.+-+..++..|+-++..+-.+.+.+....+
T Consensus 888 --ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpil 928 (982)
T KOG4653|consen 888 --EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPIL 928 (982)
T ss_pred --HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHH
Confidence 12455555444332888999999999888877666655544
No 294
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.26 E-value=76 Score=36.90 Aligned_cols=111 Identities=17% Similarity=0.100 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh
Q 039015 376 AMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 376 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
...+.+.++++...+.+..+|.+++..|..++.++ ..+..-+-.+.+..|..-|.+..+.++..|+.+|..+-.++.+-
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 34456888888888999999999999999998633 33444455566777777777788999999999999886544221
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE 494 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 494 (685)
+..++..++.++++..++|+|..| |.+++.++
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdn 192 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDN 192 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHH---HHhhccCc
Confidence 134567788888888789999865 55665544
No 295
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=78.07 E-value=81 Score=31.84 Aligned_cols=137 Identities=23% Similarity=0.200 Sum_probs=83.0
Q ss_pred HHHHHH-hhcCCCHHHHHHHHHHhhccccCc-chhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHh
Q 039015 423 IPSLLK-LLSSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLI 500 (685)
Q Consensus 423 ip~Lv~-lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i 500 (685)
+|.|+. +-+..++..+...+.+|..++.++ .+... ++..|+.+...+ ..+.+..+...+..|-..++-.-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~-~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQG-SLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCC-chhHHHHHHHHHHHHHHhCchHH--
Confidence 455655 445588999999999999999887 33333 356666666766 66665556666665543222110
Q ss_pred hcCCCcHHHHHHH--h------ccCC--HHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHH
Q 039015 501 GENPEAIPALVDM--V------RDGT--DRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAV 570 (685)
Q Consensus 501 ~~~~g~i~~Lv~l--L------~~~~--~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~ 570 (685)
+.+..++.. + .+++ .+.....+.++..+|...+++ ....++.+..+|..+.++.....++..
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 223333333 1 1112 233444567888888766662 222467777778334556777888888
Q ss_pred HHHHh
Q 039015 571 LATLA 575 (685)
Q Consensus 571 L~~La 575 (685)
|..|+
T Consensus 146 l~~Lc 150 (234)
T PF12530_consen 146 LAPLC 150 (234)
T ss_pred HHHHH
Confidence 88888
No 296
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.90 E-value=58 Score=39.40 Aligned_cols=254 Identities=18% Similarity=0.196 Sum_probs=137.6
Q ss_pred HHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCC----
Q 039015 400 AYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGL---- 475 (685)
Q Consensus 400 ~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~---- 475 (685)
..+|-.+-+.+.+|...+.++.++..++.+|-+ .+-+..-+.++.-|-..+..+ +.+.-+-.+|..|++|-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence 456777888899999999999999888888843 333444444444433222110 11233456677776641
Q ss_pred -------CHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhcc----------CCHHHHHHHHHHH---HHhc-
Q 039015 476 -------KVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRD----------GTDRSKKNALVAI---FGLL- 533 (685)
Q Consensus 476 -------~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~----------~~~~~~~~A~~aL---~nLs- 533 (685)
.........++|+..-..+ ..+..+++ .|++..|...|.. ++.-.-..-...| +.++
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFge-atGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGE-ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhc-cccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 1234455566777665433 66777787 8888888777641 1111111122233 3333
Q ss_pred -CCCCcHHHH-------------HhcC---------ChHHHHHHh-ccCCChhHHHHH--HHHHHHHhc------Ch---
Q 039015 534 -MHSGNHWRF-------------LAAG---------AVPLLLNLL-TSSDSEELITDS--LAVLATLAE------KL--- 578 (685)
Q Consensus 534 -~~~~n~~~i-------------v~~G---------~v~~Lv~lL-~~~~~~~~~~~a--l~~L~~La~------~~--- 578 (685)
.+..|+.++ .+.| +|..|.++- ..-..+.+..+. ++-.-.+-. .|
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 444465442 3334 222222221 011122222222 222211111 11
Q ss_pred --hcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHh---cCChHHHHHH
Q 039015 579 --DGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLS---QGSSRASKKA 653 (685)
Q Consensus 579 --~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~---~g~~~~k~~A 653 (685)
..++.|..+|++..|+..+-.. +|..+-.-+..|..+++.++.. .+ +....|-++.|++++. +|+.-.--.|
T Consensus 897 fnpdk~~iynagavRvlirslLln-ypK~qlefl~lleSlaRaspfn-ae-lltS~gcvellleIiypflsgsspfLsha 973 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLN-YPKLQLEFLNLLESLARASPFN-AE-LLTSAGCVELLLEIIYPFLSGSSPFLSHA 973 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhh-ChHHHHHHHHHHHHHhhcCCCc-hh-hhhcccHHHHHHHHhhhhhcCCchHhhcc
Confidence 2356688889999999944334 8888888999999998876433 23 3333677888877763 4444444455
Q ss_pred HHHHHHHHH
Q 039015 654 SALIRILHE 662 (685)
Q Consensus 654 ~~lL~~l~~ 662 (685)
..++.+|..
T Consensus 974 lkIvemLga 982 (2799)
T KOG1788|consen 974 LKIVEMLGA 982 (2799)
T ss_pred HHHHHHHhh
Confidence 555555443
No 297
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.68 E-value=18 Score=44.04 Aligned_cols=130 Identities=14% Similarity=0.119 Sum_probs=93.9
Q ss_pred HHHHHHHh----cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccCcch-
Q 039015 381 ANFISDRL----LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS-SKDSSTQENAIAALLNLSKHCKS- 454 (685)
Q Consensus 381 i~~Lv~~L----~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~- 454 (685)
.++++... ..++|+.|..|.-+|..++--+. .+.+ -..|.|+..+. ++++.++.+++.+++-|+..-.|
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHH-HHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 45555555 34688999999888888764332 2222 24889999997 68999999999999988754333
Q ss_pred hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHH
Q 039015 455 KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNAL 526 (685)
Q Consensus 455 k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~ 526 (685)
-+. .-+.+-..|... +..+|..|.-+|.+|..++-.| - .|.+.-+..+|.+++.+.+.-|-
T Consensus 996 ie~-----~T~~Ly~rL~D~-~~~vRkta~lvlshLILndmiK----V-KGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 996 IEP-----WTEHLYRRLRDE-SPSVRKTALLVLSHLILNDMIK----V-KGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred cch-----hhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhhhH----h-cccHHHHHHHhcCCcHHHHHHHH
Confidence 111 123445556666 8999999999999998765443 3 78899999999999888776655
No 298
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.58 E-value=1.8 Score=40.64 Aligned_cols=47 Identities=17% Similarity=0.448 Sum_probs=35.1
Q ss_pred ccCcCccccCCCcee-------ccCcccccHHHHHHHHHc-----C-----CCCCCCCCccccC
Q 039015 281 FTCPISLEIMKDPVT-------LSTGHTYDRASILKWFRA-----G-----NSTCPKTGERLQS 327 (685)
Q Consensus 281 ~~CpIc~~~m~dPv~-------~~cghtfcr~ci~~~~~~-----~-----~~~CP~c~~~l~~ 327 (685)
--|.||.-+--|-.+ +.||+.|..-|+..|+.. + -..||.|..++.-
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 468888777665443 369999999999999984 1 1369999887653
No 299
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=77.50 E-value=2.5 Score=39.34 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=24.4
Q ss_pred CCccCcCccccCCCceeccC------------cccc-cHHHHHHHHH
Q 039015 279 DDFTCPISLEIMKDPVTLST------------GHTY-DRASILKWFR 312 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~~c------------ghtf-cr~ci~~~~~ 312 (685)
++.+||||++.-.+.|.+-| +..| ...|+.++.+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 46789999999999998743 3333 2347777665
No 300
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=77.45 E-value=29 Score=41.12 Aligned_cols=169 Identities=18% Similarity=0.171 Sum_probs=111.8
Q ss_pred HHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchhHHHHhcCcHH--HHHHHhcCCCCH-
Q 039015 402 EVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSKSMVVESGGLD--FIVDMVKKGLKV- 477 (685)
Q Consensus 402 ~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~--~Lv~lL~~~~~~- 477 (685)
.|.+...+++++...+.+.|++..+...+.. ...+.+..++..+.|++...+.+........+. .+-.++..- +.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w-~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW-DSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-chh
Confidence 7778888899999999999999999999986 667899999999999998876655544322222 333344433 44
Q ss_pred HHHHHHHHHHHHhcCchhH------HHHh----hc-------------CCCcHHH-HHHHhccCC-HHHHHHHHHHHHHh
Q 039015 478 EARQHAAATLFYIASIEEY------RKLI----GE-------------NPEAIPA-LVDMVRDGT-DRSKKNALVAIFGL 532 (685)
Q Consensus 478 e~~~~Aa~~L~~Ls~~~~~------~~~i----~~-------------~~g~i~~-Lv~lL~~~~-~~~~~~A~~aL~nL 532 (685)
+.-.+|+.+|..+..+.+. +..+ .+ ....+.+ +..++.... +...--|++++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 7778899999888765321 1111 10 1122333 444554433 45566788899988
Q ss_pred cC-CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 039015 533 LM-HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVL 571 (685)
Q Consensus 533 s~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L 571 (685)
.. +++++..+.+.|+++.+.+.-.......+...+..++
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 653 LEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred HHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 85 5568888889999998888753222334444444443
No 301
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.38 E-value=0.74 Score=45.87 Aligned_cols=49 Identities=14% Similarity=0.275 Sum_probs=32.4
Q ss_pred cCcCccccC-CCcee-ccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015 282 TCPISLEIM-KDPVT-LSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN 333 (685)
Q Consensus 282 ~CpIc~~~m-~dPv~-~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n 333 (685)
.|--|+..- .+|.. ++|+|.||..|...-. ...||.|++.+....+..|
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc
Confidence 455554322 56654 4899999999964322 2389999999766555554
No 302
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.12 E-value=12 Score=34.28 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc-hhhHHHhhCCHHHHHHhhcC---CCHHHHHHHHHHhhcccc
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF-NRSCLVEVGCIPSLLKLLSS---KDSSTQENAIAALLNLSK 450 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~-~r~~i~~~G~ip~Lv~lL~s---~~~~~~~~A~~aL~nLs~ 450 (685)
+.++..|..+|+++++.++..|+..|..+.++... .+..+....++..|+.++.. .+..++..++..+.+.+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999986644 55667777888889999875 477899999998877663
No 303
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.92 E-value=1.6e+02 Score=34.71 Aligned_cols=149 Identities=18% Similarity=0.188 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
+.++.+++..+..+.......-+..++..++.-.++ .....-..|.|=+.|.+....+.-.|+.++.+|..-.. +
T Consensus 204 rla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~--~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r 278 (865)
T KOG1078|consen 204 RLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKEN--QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS---R 278 (865)
T ss_pred HHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhc--ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH---h
Confidence 345666677665543333333333333333222222 11112234455556667788888889988888864221 1
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHH---------HHhhcC--CCcHHHHHHHhccCCHHHHHHHH
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYR---------KLIGEN--PEAIPALVDMVRDGTDRSKKNAL 526 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~---------~~i~~~--~g~i~~Lv~lL~~~~~~~~~~A~ 526 (685)
++.. ++..+--++... ..-.|-.|..+|..++.....+ ..|... .=+-.++..+|+.|+...+..-.
T Consensus 279 ~l~p-avs~Lq~flssp-~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm 356 (865)
T KOG1078|consen 279 ELAP-AVSVLQLFLSSP-KVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLM 356 (865)
T ss_pred hcch-HHHHHHHHhcCc-HHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHH
Confidence 1112 666666677777 7888999999999887644322 222211 11345666677777765544444
Q ss_pred HHHHHhc
Q 039015 527 VAIFGLL 533 (685)
Q Consensus 527 ~aL~nLs 533 (685)
.-+.+..
T Consensus 357 ~qI~~fv 363 (865)
T KOG1078|consen 357 KQISSFV 363 (865)
T ss_pred HHHHHHH
Confidence 4444443
No 304
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=76.71 E-value=8.8 Score=35.64 Aligned_cols=71 Identities=10% Similarity=0.115 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-CchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccc
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSS-IFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLS 449 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs 449 (685)
.++..|.++|.++++.++..|+..|..+.++. ..-...+...+++..|+.++.. .++.++..++..+.+-+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999853 3456678888999999999974 67789999998887765
No 305
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.56 E-value=3.4 Score=48.46 Aligned_cols=38 Identities=13% Similarity=0.322 Sum_probs=29.3
Q ss_pred CCCCCccCcCccccC-CCceec-cCcccccHHHHHHHHHc
Q 039015 276 LTPDDFTCPISLEIM-KDPVTL-STGHTYDRASILKWFRA 313 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m-~dPv~~-~cghtfcr~ci~~~~~~ 313 (685)
.++..-.|-+|...+ ..|-.+ +|||.|.+.||.+....
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 566678899998654 456544 99999999999987653
No 306
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=76.06 E-value=1.7 Score=44.61 Aligned_cols=43 Identities=30% Similarity=0.556 Sum_probs=34.3
Q ss_pred CccCcCccccCC----CceeccCcccccHHHHHHHHHcCCCCCCCCCc
Q 039015 280 DFTCPISLEIMK----DPVTLSTGHTYDRASILKWFRAGNSTCPKTGE 323 (685)
Q Consensus 280 ~~~CpIc~~~m~----dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~ 323 (685)
++-||||.+.+. +|...+|||+--..|++.....+ -+||.|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 455999998876 45667999998777777777676 99999977
No 307
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.32 E-value=68 Score=37.28 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=82.0
Q ss_pred hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHH
Q 039015 420 VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKL 499 (685)
Q Consensus 420 ~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 499 (685)
+|.+..|++...+++..++-..+.+|..|+.......--+-.+....+..-+... .+.+|..|+-+|..+=..+..
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~d--- 159 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKD--- 159 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCC---
Confidence 4667777788888999999999999998887555455555566677777666666 688999999999988543211
Q ss_pred hhcCCCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCCCCcHHHHHh
Q 039015 500 IGENPEAIPALVDMVRDG-TDRSKKNALVAIFGLLMHSGNHWRFLA 544 (685)
Q Consensus 500 i~~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~iv~ 544 (685)
.+..++..++.+++++ +++++..| |.|++.+......+++
T Consensus 160 --ee~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 160 --EECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVE 200 (892)
T ss_pred --CcccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHH
Confidence 1245677888999864 57777754 5666666665554443
No 308
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=74.74 E-value=9.5 Score=43.39 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
.+|..++.+....+..+|..|++.|-.+|++++++-..+ +..|+++|.++++.....+-.+|..|-..+
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d------ 127 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD------ 127 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC------
Confidence 468888999999999999999999999999776666665 458999999988765555555554443211
Q ss_pred HhcCcHHHHHHHhc---CCCCHHHHHHHHHHH
Q 039015 459 VESGGLDFIVDMVK---KGLKVEARQHAAATL 487 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~---~~~~~e~~~~Aa~~L 487 (685)
-.|.+..+...+. .+ +..+|+.+...|
T Consensus 128 -~k~tL~~lf~~i~~~~~~-de~~Re~~lkFl 157 (556)
T PF05918_consen 128 -PKGTLTGLFSQIESSKSG-DEQVRERALKFL 157 (556)
T ss_dssp -HHHHHHHHHHHHH---HS--HHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHhcccC-chHHHHHHHHHH
Confidence 1233334444333 44 555666666655
No 309
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.60 E-value=70 Score=40.35 Aligned_cols=240 Identities=15% Similarity=0.131 Sum_probs=122.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh--CCHHHHHHhhcCCCH---HHHHHHHHHhhccc---cC
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV--GCIPSLLKLLSSKDS---STQENAIAALLNLS---KH 451 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~--G~ip~Lv~lL~s~~~---~~~~~A~~aL~nLs---~~ 451 (685)
...-|+..|.+....+|..++-+|..|-.+.+. ..+.+. ..+..+.+..++=.. +....++.+|..|. .+
T Consensus 1040 Il~eLL~~lt~kewRVReasclAL~dLl~g~~~--~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d 1117 (1702)
T KOG0915|consen 1040 ILDELLVNLTSKEWRVREASCLALADLLQGRPF--DQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICD 1117 (1702)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 355666667777888999999999999875332 223222 334444444443222 34445566665553 23
Q ss_pred cch--hHHHHhcCcHHHHHH--HhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHH-
Q 039015 452 CKS--KSMVVESGGLDFIVD--MVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKN- 524 (685)
Q Consensus 452 ~~~--k~~i~~~g~i~~Lv~--lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~- 524 (685)
..| +..=+-+.++|.|+. ++ +. -.++|..+..++..|+... ..+..++. .||.|++....-.+.+...
T Consensus 1118 ~~~~~~~~~~l~~iLPfLl~~gim-s~-v~evr~~si~tl~dl~Kssg~~lkP~~~~---LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1118 VTNGAKGKEALDIILPFLLDEGIM-SK-VNEVRRFSIGTLMDLAKSSGKELKPHFPK---LIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred cCCcccHHHHHHHHHHHHhccCcc-cc-hHHHHHHHHHHHHHHHHhchhhhcchhhH---HHHHHHHHccccchHHHHHH
Confidence 322 221112334555543 22 23 5789999999999997654 44444443 7888888775433332221
Q ss_pred HHHH-------HHHh----cCCCC---c---HHHHHh----cCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHH
Q 039015 525 ALVA-------IFGL----LMHSG---N---HWRFLA----AGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIA 583 (685)
Q Consensus 525 A~~a-------L~nL----s~~~~---n---~~~iv~----~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~ 583 (685)
++.+ +-++ +.... . +...++ ...+|.+.++++++-.-+.+-.|+..+..|+.. -+.+.
T Consensus 1193 s~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r-~~~em 1271 (1702)
T KOG0915|consen 1193 SLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQR-LGSEM 1271 (1702)
T ss_pred HHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH-hcccc
Confidence 1111 1111 11111 0 011111 224666666665544444555555555555542 11110
Q ss_pred HHhcCC-hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHH
Q 039015 584 ILHHGA-LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALL 628 (685)
Q Consensus 584 i~~~g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l 628 (685)
-=..|- +..++-.+++. ++.++...+.+...|.....++-.+.+
T Consensus 1272 tP~sgKll~al~~g~~dR-Nesv~kafAsAmG~L~k~Ss~dq~qKL 1316 (1702)
T KOG0915|consen 1272 TPYSGKLLRALFPGAKDR-NESVRKAFASAMGYLAKFSSPDQMQKL 1316 (1702)
T ss_pred CcchhHHHHHHhhccccc-cHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 001121 34444455555 778888777777777766545333333
No 310
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=74.57 E-value=3.2 Score=38.69 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=35.0
Q ss_pred CCCccCcCccccCCCceeccCccc-----ccHHHHHHHHHc-CCCCCCCCCcccc
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHT-----YDRASILKWFRA-GNSTCPKTGERLQ 326 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cght-----fcr~ci~~~~~~-~~~~CP~c~~~l~ 326 (685)
..+-.|-||.+-.. +..-||... ..++|+++|+.. +...||.|+.+..
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 34568999987754 444565542 379999999985 5679999998764
No 311
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=74.45 E-value=2.5 Score=32.05 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=24.9
Q ss_pred CccCcCccccC--CCceec--cCcccccHHHHHH
Q 039015 280 DFTCPISLEIM--KDPVTL--STGHTYDRASILK 309 (685)
Q Consensus 280 ~~~CpIc~~~m--~dPv~~--~cghtfcr~ci~~ 309 (685)
.-.|++|.+.+ .|.+++ .||-.|.|.|..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 46899999999 677776 5999999999543
No 312
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.04 E-value=1.5e+02 Score=33.04 Aligned_cols=120 Identities=18% Similarity=0.147 Sum_probs=78.7
Q ss_pred hhCCHHHHHHhh----cCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch
Q 039015 419 EVGCIPSLLKLL----SSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE 494 (685)
Q Consensus 419 ~~G~ip~Lv~lL----~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 494 (685)
+.|.+..++..| .+++..++..|+..|.|++..-..+..-...-.+..++.-|..+.+.++...|..+|..+...-
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 345555554443 3467789999999999999875444444444567777777777767888888888887665433
Q ss_pred hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015 495 EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN 538 (685)
Q Consensus 495 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 538 (685)
.++....--..+.-.+..+..+.+++.+.+|..++..|+.....
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~ 375 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGG 375 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCC
Confidence 33322211012444566677788899999888888888765543
No 313
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=74.01 E-value=3.2 Score=37.68 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=35.1
Q ss_pred CccCcCccccCCC--cee-ccCcc------cccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 280 DFTCPISLEIMKD--PVT-LSTGH------TYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 280 ~~~CpIc~~~m~d--Pv~-~~cgh------tfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
...|.||.+...+ -|+ ++||. .||..|+.+|-.+ ....|.=|..-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR~I~y 80 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNRNIKY 80 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCcccceEE
Confidence 5789999998887 654 47775 4999999999654 677888665543
No 314
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=73.84 E-value=3.4 Score=29.83 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=22.9
Q ss_pred CcCccccCCCceecc---CcccccHHHHHHHHHcCCC-CCCCC
Q 039015 283 CPISLEIMKDPVTLS---TGHTYDRASILKWFRAGNS-TCPKT 321 (685)
Q Consensus 283 CpIc~~~m~dPv~~~---cghtfcr~ci~~~~~~~~~-~CP~c 321 (685)
|-+|.++...-+.=+ |+-.+...|+..||..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 567777777666543 8888999999999986433 69987
No 315
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=73.64 E-value=13 Score=34.15 Aligned_cols=71 Identities=10% Similarity=0.034 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-CchhhHHHhhCCHHHHHHhhcCCC--HHHHHHHHHHhhccc
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSS-IFNRSCLVEVGCIPSLLKLLSSKD--SSTQENAIAALLNLS 449 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~ip~Lv~lL~s~~--~~~~~~A~~aL~nLs 449 (685)
.++..|.+.|.++++.++..|+..|..+.++. ..-...+...+++..|+.++.... +.++..++..+.+-+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999863 345677788899999999988732 338888888877655
No 316
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=73.59 E-value=61 Score=38.89 Aligned_cols=182 Identities=14% Similarity=0.129 Sum_probs=109.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCC---HHHHHHhh-cCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 382 NFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGC---IPSLLKLL-SSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 382 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~---ip~Lv~lL-~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
+.+-..+.+.+...+.+|+..+.....+. + .....|. +-.++... .+.+..+.-.|+..|.-++..-.....
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~---~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEA---K-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhcc---c-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 34445567788899999999998887632 2 2223333 33333322 335566666677777666543221111
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CC
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM-HS 536 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~ 536 (685)
=...+..+.|+.-++.- ..+++..+..++-..+. .... ...++.+...++++++..+......+-.... .+
T Consensus 332 ~~~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~n------s~~l-~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEK-KSELRDALLKALDAILN------STPL-SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred HHHHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHh------cccH-HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 12356677777777765 55666655555543322 1111 3467888889999999988776555544432 22
Q ss_pred -CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 039015 537 -GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE 576 (685)
Q Consensus 537 -~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~ 576 (685)
.+...-.-.+.++.++... .|.+.+++..|..++..+..
T Consensus 404 ~~~~~~~t~~~l~p~~~~~~-~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 404 PKTVEKETVKTLVPHLIKHI-NDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcCcchhhHHHHhHHHhhhc-cCCcHHHHHHHHHHHHHHHH
Confidence 2333333345677788877 67788999888888776644
No 317
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=73.53 E-value=4 Score=33.17 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=22.2
Q ss_pred CccCcCccccCC-----Cceec--cCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 280 DFTCPISLEIMK-----DPVTL--STGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 280 ~~~CpIc~~~m~-----dPv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
.-.|.||++-.- +|.+. .|+.-.||.|++-=.+.|+..||.|+....
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 457999987554 33332 588889999998878889999999986654
No 318
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=73.25 E-value=29 Score=32.90 Aligned_cols=145 Identities=13% Similarity=0.239 Sum_probs=78.0
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHH
Q 039015 462 GGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWR 541 (685)
Q Consensus 462 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 541 (685)
..++.|..+|+++.+.+.|..+..+|.-|-..|.++.+... . ..+.-. -.+.+..... ..+.+.. ....-..
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~-~-~~~~~~--~~~~~~~~~~---~~l~~~~-~~~~~ee 81 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQ-K-SLDSKS--SENSNDESTD---ISLPMMG-ISPSSEE 81 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccc-c-cCCccc--cccccccchh---hHHhhcc-CCCchHH
Confidence 45778889999887899999999999999888877666433 1 111000 0011111111 1122111 1113334
Q ss_pred HHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcH-HHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015 542 FLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGT-IAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL 616 (685)
Q Consensus 542 iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L 616 (685)
..-..++..|+++|+...-..-...++.++.++-.....+ ...+. ..+|.++..++.. ++..+|.-..-|..|
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~-~viP~~l~~i~~~-~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP-QVIPIFLRVIRTC-PDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH-HHhHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 4445577888998843222333344555555554321111 11111 2478888888876 667777655544443
No 319
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=72.90 E-value=1.3e+02 Score=31.68 Aligned_cols=199 Identities=16% Similarity=0.171 Sum_probs=140.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHH-HhhcC-C-CHHHHHHHHHHhhccccCcch
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLL-KLLSS-K-DSSTQENAIAALLNLSKHCKS 454 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv-~lL~s-~-~~~~~~~A~~aL~nLs~~~~~ 454 (685)
+....|++.|...+-+.+..++....++-+.....|...++- ..=|-++ .++.. . .+++..++-..|.....++.-
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~L 158 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFL 158 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHH
Confidence 346677888877888888888877777776666666655543 2222222 23333 3 256666666677777788777
Q ss_pred hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcH-HH-HHHHhccCCHHHHHHHHHHHH
Q 039015 455 KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAI-PA-LVDMVRDGTDRSKKNALVAIF 530 (685)
Q Consensus 455 k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i-~~-Lv~lL~~~~~~~~~~A~~aL~ 530 (685)
.+.|.............+.+ +-++...|.++...|.... ...+-+..+...+ +. --.++.+++.-.+..+..+|.
T Consensus 159 akiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg 237 (342)
T KOG1566|consen 159 AKIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLG 237 (342)
T ss_pred HHHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHH
Confidence 78888888888888888888 7788888888888775433 2333333323322 33 556888999999999999999
Q ss_pred HhcCCCCcHHHHHh----cCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015 531 GLLMHSGNHWRFLA----AGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD 579 (685)
Q Consensus 531 nLs~~~~n~~~iv~----~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~ 579 (685)
.+-.+..|...|.. ......++.+| .+++..++-+|-.+......++.
T Consensus 238 ~llldr~N~~~M~kYiss~enLKlmM~ll-rdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 238 ELLLDRSNSAVMTKYISSPENLKLMMNLL-RDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHhCCCcHHHHHHHhcCHHHHHHHHHHh-hCccccchHHHHHHHHHHhcCCC
Confidence 99999888877754 25677888888 67788888899988888876543
No 320
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=72.30 E-value=38 Score=39.25 Aligned_cols=134 Identities=15% Similarity=0.143 Sum_probs=93.2
Q ss_pred HHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhH
Q 039015 417 LVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEY 496 (685)
Q Consensus 417 i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~ 496 (685)
-+...++|.|..-+++.+..+|+.++.++-.++..-+ ...+..-.+|.|-.+.....+..++.+++.++..|...-+
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD- 461 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD- 461 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH-
Confidence 3445678888899999999999999999998876554 4445555677777765544478889999999988872212
Q ss_pred HHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhc
Q 039015 497 RKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT 556 (685)
Q Consensus 497 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~ 556 (685)
+..+ ..-+.++.+..+..++..+-..+.+..++.....+...++...++|.++.+..
T Consensus 462 ~~~v---~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 462 KAAV---LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSV 518 (700)
T ss_pred HHHh---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhh
Confidence 2222 22466666666666777777777777777665555455566678888887763
No 321
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=71.93 E-value=14 Score=33.31 Aligned_cols=72 Identities=17% Similarity=0.326 Sum_probs=55.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHh-----cC---ChHHHHHHHHHHHHHHH
Q 039015 591 DMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLS-----QG---SSRASKKASALIRILHE 662 (685)
Q Consensus 591 ~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-----~g---~~~~k~~A~~lL~~l~~ 662 (685)
..|.+=|+.. ++.++-.|+.+|..||..+++..+..+.+...+|..+.++-. .| +..++..|..++.++-.
T Consensus 41 d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 41 EYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 3455555565 899999999999999999988888888876667777777766 23 23578899999988754
Q ss_pred h
Q 039015 663 F 663 (685)
Q Consensus 663 ~ 663 (685)
.
T Consensus 120 ~ 120 (122)
T cd03572 120 Y 120 (122)
T ss_pred c
Confidence 3
No 322
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.91 E-value=1.3e+02 Score=35.30 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=64.0
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChH
Q 039015 512 DMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALD 591 (685)
Q Consensus 512 ~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~ 591 (685)
+++.+.++-.+...+-++.---...+| .++|..|++.--++.+++++..|+-+|.-++... -..+|
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~GTgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d--------p~~~~ 591 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVGTGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD--------PEQLP 591 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhccCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecC--------hhhch
Confidence 355555565555555444321111111 2467778887547888999999988888665431 12467
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhccCcHH
Q 039015 592 MIMKILDSCTSRAGKEYCVSLLLALCINGGAN 623 (685)
Q Consensus 592 ~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~ 623 (685)
..|++|..+.++.++--++-+|.--|.+.+..
T Consensus 592 s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 592 STVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred HHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 78887776669999999988888888876543
No 323
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=71.32 E-value=17 Score=33.90 Aligned_cols=72 Identities=11% Similarity=0.013 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc-hhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccc
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF-NRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLS 449 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~-~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs 449 (685)
+.++..|.++|.+.++.++..|+..|..++++... -+..+...+++..|+.++.. .+..++...+..+...+
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 34678889999999999999999999999985542 45677888999999999988 78899999998887765
No 324
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.19 E-value=3.6 Score=44.92 Aligned_cols=70 Identities=19% Similarity=0.318 Sum_probs=42.2
Q ss_pred CCccCcCcc-ccCCCce---eccCcccccHHHHHHHHHc-----CCCCCCC--CCccccCC---CCcccHHHHhhHHHHH
Q 039015 279 DDFTCPISL-EIMKDPV---TLSTGHTYDRASILKWFRA-----GNSTCPK--TGERLQSK---ELLVNLVLKRIIQDWS 344 (685)
Q Consensus 279 ~~~~CpIc~-~~m~dPv---~~~cghtfcr~ci~~~~~~-----~~~~CP~--c~~~l~~~---~l~~n~~l~~~i~~~~ 344 (685)
....|.||. +.+...- +..|+|-||..|+.+++.. ....||. |...++.. .+.++ .++.+.+...
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~ 223 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRL 223 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHH
Confidence 357899999 4433322 3469999999999999973 2446775 55555443 23332 4444444444
Q ss_pred HhcCc
Q 039015 345 VDNGV 349 (685)
Q Consensus 345 ~~~~~ 349 (685)
.+.-+
T Consensus 224 ~e~~i 228 (384)
T KOG1812|consen 224 KEEVI 228 (384)
T ss_pred HHHhh
Confidence 44333
No 325
>PHA03096 p28-like protein; Provisional
Probab=70.95 E-value=2.5 Score=43.90 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=30.2
Q ss_pred ccCcCccccCCC-c-------eeccCcccccHHHHHHHHHcC--CCCCCCCCcc
Q 039015 281 FTCPISLEIMKD-P-------VTLSTGHTYDRASILKWFRAG--NSTCPKTGER 324 (685)
Q Consensus 281 ~~CpIc~~~m~d-P-------v~~~cghtfcr~ci~~~~~~~--~~~CP~c~~~ 324 (685)
-.|.||++.... | +...|.|.||..||..|.... ..+||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 458888765442 2 223799999999999998752 3466666553
No 326
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.35 E-value=1.6e+02 Score=33.53 Aligned_cols=100 Identities=13% Similarity=0.171 Sum_probs=67.5
Q ss_pred CCcHHHHHHH-hccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHH
Q 039015 504 PEAIPALVDM-VRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTI 582 (685)
Q Consensus 504 ~g~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~ 582 (685)
.|+|..|++. +.+++++++..|+-||.-.|..+.+ .++..+++|..+++..++...+-+|..-|.....+.
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 6788888887 6788899999999999888766544 456678888656677777666666665554322222
Q ss_pred HHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015 583 AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI 618 (685)
Q Consensus 583 ~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~ 618 (685)
+ +..|-.++.+. .+-+++.|+-++..+..
T Consensus 622 a------~diL~~L~~D~-~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 622 A------TDILEALMYDT-NDFVRQSAMIAVGMILM 650 (926)
T ss_pred H------HHHHHHHhhCc-HHHHHHHHHHHHHHHHh
Confidence 2 23333366665 77778877777666554
No 327
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=70.27 E-value=2.7e+02 Score=34.23 Aligned_cols=150 Identities=14% Similarity=0.099 Sum_probs=82.6
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHH
Q 039015 505 EAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAI 584 (685)
Q Consensus 505 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i 584 (685)
++++.|...|++.+..++-.|++-+..+...-+ .. ....+|...+.++...++...-..++-+|+.||...--....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 466677777777778888888888888876555 22 222356666676633333455556777777776632111111
Q ss_pred HhcCChHHHHHHhh-------cCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHH
Q 039015 585 LHHGALDMIMKILD-------SCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALI 657 (685)
Q Consensus 585 ~~~g~v~~Lv~lL~-------~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL 657 (685)
+. ..+|.+++-+. ......+++.|+-++|.+++...+....-+.. .=+-.+|..-+-+..-..|+.|.+.+
T Consensus 418 l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 418 LE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 11 12344444221 11256789999999999998765543322221 00011223333344556677666555
Q ss_pred HH
Q 039015 658 RI 659 (685)
Q Consensus 658 ~~ 659 (685)
.-
T Consensus 496 qE 497 (1133)
T KOG1943|consen 496 QE 497 (1133)
T ss_pred HH
Confidence 43
No 328
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.18 E-value=1.5e+02 Score=36.11 Aligned_cols=98 Identities=20% Similarity=0.233 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCC-----------CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhc
Q 039015 520 RSKKNALVAIFGLLMH-----------SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHH 587 (685)
Q Consensus 520 ~~~~~A~~aL~nLs~~-----------~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~ 587 (685)
..-..|+..++.+-.+ ...+.++..+|++..|++.+ -...+.++-+-+.+|..++. ++.++...-..
T Consensus 871 tSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirsl-LlnypK~qlefl~lleSlaRaspfnaelltS~ 949 (2799)
T KOG1788|consen 871 TSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSL-LLNYPKLQLEFLNLLESLARASPFNAELLTSA 949 (2799)
T ss_pred hhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHH-HhhChHHHHHHHHHHHHHhhcCCCchhhhhcc
Confidence 3344566666665321 22578899999999999987 35567888889999999987 46666666666
Q ss_pred CChHHHHHHhh---cCCChhHHHHHHHHHHHHhcc
Q 039015 588 GALDMIMKILD---SCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 588 g~v~~Lv~lL~---~~~s~~~~e~a~~~L~~L~~~ 619 (685)
|-+..|++++. +| +...-.++..++..||..
T Consensus 950 gcvellleIiypflsg-sspfLshalkIvemLgay 983 (2799)
T KOG1788|consen 950 GCVELLLEIIYPFLSG-SSPFLSHALKIVEMLGAY 983 (2799)
T ss_pred cHHHHHHHHhhhhhcC-CchHhhccHHHHHHHhhc
Confidence 66888888654 45 445666777777777753
No 329
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=70.09 E-value=67 Score=38.54 Aligned_cols=174 Identities=18% Similarity=0.149 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHH
Q 039015 476 KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMV-RDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNL 554 (685)
Q Consensus 476 ~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~l 554 (685)
.+..|..|+.-+.-...... ....-...|.+..++... ++.+..+...|+..|-.|+..-..-.+=...++.+.++.-
T Consensus 266 ~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~ 344 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDR 344 (815)
T ss_pred chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHH
Confidence 55666666666655444333 111111134444444443 4556778888888888887543322333445678888888
Q ss_pred hccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHH-HHHHHHhcCC
Q 039015 555 LTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGAN-VVALLVKSPS 633 (685)
Q Consensus 555 L~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~-~~~~l~~~~g 633 (685)
+ .+....+++.++.++...+.... -....+.+...++++ +|..+..+...+.......++. +..... .+
T Consensus 345 l-kekk~~l~d~l~~~~d~~~ns~~------l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~~~t~--~~ 414 (815)
T KOG1820|consen 345 L-KEKKSELRDALLKALDAILNSTP------LSKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLGPKTVEKETV--KT 414 (815)
T ss_pred h-hhccHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcchhhH--HH
Confidence 8 55667888888888777665100 011246667788888 9999998888877666544321 222222 34
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015 634 LMGSLYSLLSQGSSRASKKASALIRIL 660 (685)
Q Consensus 634 ~i~~L~~Ll~~g~~~~k~~A~~lL~~l 660 (685)
+++.++....+....++..|...+-.+
T Consensus 415 l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 415 LVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred HhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 677888888777777776655544433
No 330
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.03 E-value=3.9 Score=32.50 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=29.1
Q ss_pred cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHH
Q 039015 297 STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVL 336 (685)
Q Consensus 297 ~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l 336 (685)
.=-+|||..|-+..+ +..||.|+..+......|-..|
T Consensus 26 tfEcTFCadCae~~l---~g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 26 TFECTFCADCAENRL---HGLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred EEeeehhHhHHHHhh---cCcCCCCCchhhcCcCChHHHH
Confidence 345799999998766 4589999999988888885444
No 331
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=69.60 E-value=20 Score=33.17 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-CchhhHHHhhCCHHHHHHhhcC------CCHHHHHHHHHHhhccc
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSS-IFNRSCLVEVGCIPSLLKLLSS------KDSSTQENAIAALLNLS 449 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~ip~Lv~lL~s------~~~~~~~~A~~aL~nLs 449 (685)
.++..|.++|.++++.++..|+..|..+.++. ..-+..+..-+++..|+++++. .+..++...+..+..-+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999998844 3356778888999999999953 46788888888876554
No 332
>PHA02862 5L protein; Provisional
Probab=69.54 E-value=3.8 Score=37.46 Aligned_cols=45 Identities=11% Similarity=0.228 Sum_probs=32.8
Q ss_pred cCcCccccCCCceeccCcc-----cccHHHHHHHHHc-CCCCCCCCCccccC
Q 039015 282 TCPISLEIMKDPVTLSTGH-----TYDRASILKWFRA-GNSTCPKTGERLQS 327 (685)
Q Consensus 282 ~CpIc~~~m~dPv~~~cgh-----tfcr~ci~~~~~~-~~~~CP~c~~~l~~ 327 (685)
.|=||.+--.+. .-||.. -..+.|+++|+.. +...||.|+.+..-
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 577888775544 356543 3578999999974 56799999988753
No 333
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=69.18 E-value=3 Score=30.74 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=22.2
Q ss_pred CcCccccCCC--ceeccCcc-----cccHHHHHHHHHc-CCCCCCCC
Q 039015 283 CPISLEIMKD--PVTLSTGH-----TYDRASILKWFRA-GNSTCPKT 321 (685)
Q Consensus 283 CpIc~~~m~d--Pv~~~cgh-----tfcr~ci~~~~~~-~~~~CP~c 321 (685)
|-||++--.+ |.+.||+- ...+.|+.+|+.. +..+|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 4455544332 56777653 3578899999984 56788876
No 334
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=69.18 E-value=39 Score=38.31 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-
Q 039015 376 AMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS- 454 (685)
Q Consensus 376 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~- 454 (685)
...+.+..+++.+.+.+..+|.+++..|+.++. ...--....-.|.+..|..-+-+..+.++..|+.+|..+-....|
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 445667888888889999999999999998885 322222455567788888766667789999999999877544444
Q ss_pred hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch
Q 039015 455 KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE 494 (685)
Q Consensus 455 k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 494 (685)
...+ ...++.++++..+.|+|..| |.|++.++
T Consensus 167 en~~-----~n~l~~~vqnDPS~EVRr~a---llni~vdn 198 (885)
T COG5218 167 ENRI-----VNLLKDIVQNDPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred HHHH-----HHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence 2222 33677778877678888765 56666544
No 335
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=68.20 E-value=1.7e+02 Score=31.18 Aligned_cols=159 Identities=16% Similarity=0.138 Sum_probs=114.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhccccCcch--hHHHH-hcC-cHHHHHHHhcCC----CC--------HHHHHHHHHH
Q 039015 423 IPSLLKLLSSKDSSTQENAIAALLNLSKHCKS--KSMVV-ESG-GLDFIVDMVKKG----LK--------VEARQHAAAT 486 (685)
Q Consensus 423 ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~--k~~i~-~~g-~i~~Lv~lL~~~----~~--------~e~~~~Aa~~ 486 (685)
+..+-+.|++....++..++..|..+.....+ ...+. .-+ -.+.+..++... .. ..+|.+.+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 67778889888888999999999999884432 34444 323 355666666321 01 1788888888
Q ss_pred HHHhcC--chhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHH-hcCCCC----cHHHHHhcCChHHHHHHhccCC
Q 039015 487 LFYIAS--IEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFG-LLMHSG----NHWRFLAAGAVPLLLNLLTSSD 559 (685)
Q Consensus 487 L~~Ls~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n-Ls~~~~----n~~~iv~~G~v~~Lv~lL~~~~ 559 (685)
+..+.. +...+..+....+.+..+.+-|..++++.....+.+|.. +..+.. .|..+....++..|+.+. ...
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly-~~~ 216 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLY-SRD 216 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHh-ccc
Confidence 877654 346777777668889999999998888999999999985 433332 455566667888889876 444
Q ss_pred Ch----hHHHHHHHHHHHHhcChhcHH
Q 039015 560 SE----ELITDSLAVLATLAEKLDGTI 582 (685)
Q Consensus 560 ~~----~~~~~al~~L~~La~~~~~~~ 582 (685)
++ .+.+.+-..|..+|.++..--
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~~Gv 243 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPKHGV 243 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCCccc
Confidence 44 888999999999998655433
No 336
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.09 E-value=3.3e+02 Score=34.83 Aligned_cols=182 Identities=17% Similarity=0.124 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHhhcCCchhhHHHh--hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHh
Q 039015 394 EEKNKVAYEVRLLTKSSIFNRSCLVE--VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMV 471 (685)
Q Consensus 394 ~~~~~a~~~L~~La~~~~~~r~~i~~--~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL 471 (685)
..+..|+.-+..+++.. +..+.- .-.||.|.+.=.+++..+|.....+=.-|..+..+-.--.-..++.-|+.-|
T Consensus 972 nSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l 1048 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNL 1048 (1702)
T ss_pred hcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666522 222222 2457888887778899998877766666665543321112245566666666
Q ss_pred cCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHH---HHHHHHHHhcC---CCC--cHHHHH
Q 039015 472 KKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKK---NALVAIFGLLM---HSG--NHWRFL 543 (685)
Q Consensus 472 ~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~---~A~~aL~nLs~---~~~--n~~~iv 543 (685)
.+. .+.+|+.++-+|..|-...+.-...-.-+..+..+++.+.+-.+.+++ .++.+|..|+. +.. .+.+-+
T Consensus 1049 t~k-ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1049 TSK-EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred cch-hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence 666 688999999999999876644333322234677777776543444454 34556666652 111 222223
Q ss_pred hcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015 544 AAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD 579 (685)
Q Consensus 544 ~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~ 579 (685)
-+-++|.|+.-=-.+.-++++.-++.++.-|+.+..
T Consensus 1128 l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1128 LDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch
Confidence 333566665421113457888889999999988643
No 337
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=67.71 E-value=4.5 Score=46.57 Aligned_cols=49 Identities=8% Similarity=-0.082 Sum_probs=36.9
Q ss_pred CCCCCCCccCcCccccCCCce----ecc---CcccccHHHHHHHHHc-----CCCCCCCCC
Q 039015 274 GGLTPDDFTCPISLEIMKDPV----TLS---TGHTYDRASILKWFRA-----GNSTCPKTG 322 (685)
Q Consensus 274 ~~~~~~~~~CpIc~~~m~dPv----~~~---cghtfcr~ci~~~~~~-----~~~~CP~c~ 322 (685)
.....+.-.|++|-.-+.+|+ +.+ |+|.||-.||..|... .+..|++|.
T Consensus 90 DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~ 150 (1134)
T KOG0825|consen 90 DEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCE 150 (1134)
T ss_pred CcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHH
Confidence 346677789999998888865 233 9999999999999874 244566663
No 338
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.67 E-value=9.6 Score=37.38 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=35.8
Q ss_pred ccCcCccccCC--CceeccCcccccHHHHHHHHHc-------CCCCCCCCCccc
Q 039015 281 FTCPISLEIMK--DPVTLSTGHTYDRASILKWFRA-------GNSTCPKTGERL 325 (685)
Q Consensus 281 ~~CpIc~~~m~--dPv~~~cghtfcr~ci~~~~~~-------~~~~CP~c~~~l 325 (685)
--|.+|...+. |-+.+.|-|.|...|+..|-.. ....||.|.+.+
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 45778877766 5667799999999999999874 245799998875
No 339
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.35 E-value=35 Score=35.67 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh--CCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV--GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~--G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
.+...+..|++.+.+....++..|+.|+...+ +.+... ..|..+++-+++....+...|+.++..+..+-.+...
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~---e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHP---ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888999999999999999999997443 333222 4577777778888888999999888877654433322
Q ss_pred HHhcCcHHHHHHHh-cCC--CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015 458 VVESGGLDFIVDMV-KKG--LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGL 532 (685)
Q Consensus 458 i~~~g~i~~Lv~lL-~~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 532 (685)
- .+..++..| .++ .+.-+++.|-.+|..+..+-... -+++.|+..+++.++..+..++....+.
T Consensus 166 ~----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 166 Q----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred H----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 2 233333333 222 14566888888887775543322 2455666667777888877777666555
No 340
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.11 E-value=45 Score=39.52 Aligned_cols=174 Identities=14% Similarity=0.118 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHH-H
Q 039015 476 KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLN-L 554 (685)
Q Consensus 476 ~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~-l 554 (685)
-..++..+...|.++....+.+..+.. .+++....+.|++.++-+--+|+..+..||.- ....++|-|.. .
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~-ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y 811 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQG-EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEY 811 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhH-HHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHH
Confidence 456788888888888887766667766 78999999999988876666777766666532 23345566665 3
Q ss_pred hccCC--ChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhc
Q 039015 555 LTSSD--SEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKS 631 (685)
Q Consensus 555 L~~~~--~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~ 631 (685)
..... ..+.+..+=.++.+++.. .+-...-.+ --+...+..++++ ....+..+++.|.+||....-.+...+.+
T Consensus 812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~~e- 888 (982)
T KOG4653|consen 812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFFHE- 888 (982)
T ss_pred HhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHHHH-
Confidence 32111 123333333444444331 000000000 0123333344443 55568889999999987543222222221
Q ss_pred CCcHHHHHHHHh-cCChHHHHHHHHHHHHHHH
Q 039015 632 PSLMGSLYSLLS-QGSSRASKKASALIRILHE 662 (685)
Q Consensus 632 ~g~i~~L~~Ll~-~g~~~~k~~A~~lL~~l~~ 662 (685)
+...++.+.. +|+.-.||.|..++..+-.
T Consensus 889 --v~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 889 --VLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred --HHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 1333444443 4566788888888777654
No 341
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.92 E-value=43 Score=40.95 Aligned_cols=177 Identities=20% Similarity=0.207 Sum_probs=121.3
Q ss_pred cHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCC
Q 039015 463 GLDFIVDMVKKG---LKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVR-DGTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 463 ~i~~Lv~lL~~~---~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~ 537 (685)
..|.++++.++. .+++.+..|.-+|..|.... +++. ...|.|+..+. ++++..+.+++.++..|+..-+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce------s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE------SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH------HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 456666666432 26889988888888775433 5553 35889999986 7789999999999999987655
Q ss_pred cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 039015 538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALC 617 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~ 617 (685)
|-.. -..+.|...| .+.+..++..|+.+|.+|-.+. .|--.|-++.+..++.++ ++++++-|=...-.|.
T Consensus 994 nlie----~~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~-~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 994 NLIE----PWTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDP-NAEISDLAKSFFKELS 1063 (1251)
T ss_pred cccc----hhhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCC-cHHHHHHHHHHHHHhh
Confidence 5321 1345677778 6888999999999999997653 343345588888888888 9999999988888888
Q ss_pred ccCcHHHHHHHHhcCCcHHHHHHHHhcCC---hHHHHHHHHHHHHHHHh
Q 039015 618 INGGANVVALLVKSPSLMGSLYSLLSQGS---SRASKKASALIRILHEF 663 (685)
Q Consensus 618 ~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~---~~~k~~A~~lL~~l~~~ 663 (685)
..++. . -+++|-++.-+++|+ +.-+.--.-|+..+.+.
T Consensus 1064 ~k~n~--i------ynlLPdil~~Ls~~~l~~~~~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1064 SKGNT--I------YNLLPDILSRLSNGNLEEESYKTVMEFLIGLIKKD 1104 (1251)
T ss_pred hcccc--h------hhhchHHHHhhccCcccchhhHHHHHHHHHHhccc
Confidence 76521 1 123555666666662 11233334444444443
No 342
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=66.68 E-value=6 Score=30.00 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=22.7
Q ss_pred CCccCcCccccCCCceeccCcccccHHHHHHHHHc-CCCCCCCCCc
Q 039015 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA-GNSTCPKTGE 323 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~-~~~~CP~c~~ 323 (685)
+.|.||.|.+.+... .+...+......+ ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 469999999843321 2344444444332 2457999975
No 343
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=66.34 E-value=1.4e+02 Score=34.60 Aligned_cols=165 Identities=18% Similarity=0.145 Sum_probs=101.9
Q ss_pred HHhhcCCCHHHHHHHHHHhhccccCcchhHHHH----hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc
Q 039015 427 LKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV----ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE 502 (685)
Q Consensus 427 v~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~----~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~ 502 (685)
+.+|.....+.+--|+.+|.-+..|...-..+. .+..+..++..+. + .+..+..++.+|.|+-.++-.++.+..
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~-~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A-DPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c-chhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344445667777888888877777665433332 2345666666665 4 577788999999999988888887766
Q ss_pred CCCcHHHHHHHh---ccCC-HHHHHHHHHHHHHhcC--CCCcHHHHHhcCChHHHHHHhcc----CCChhHHHHHHHHHH
Q 039015 503 NPEAIPALVDMV---RDGT-DRSKKNALVAIFGLLM--HSGNHWRFLAAGAVPLLLNLLTS----SDSEELITDSLAVLA 572 (685)
Q Consensus 503 ~~g~i~~Lv~lL---~~~~-~~~~~~A~~aL~nLs~--~~~n~~~iv~~G~v~~Lv~lL~~----~~~~~~~~~al~~L~ 572 (685)
. ...+...+ +.++ ......-++..+|++. ...+-+ .|..+.|...+.. ..+-+..-..+.+|.
T Consensus 628 ~---~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Alg 700 (745)
T KOG0301|consen 628 R---LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALG 700 (745)
T ss_pred H---HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 3 33333332 3333 3344444444555542 222221 4555555544421 123345566888889
Q ss_pred HHhcChhcHHHHHhcCChHHHHHHhhcC
Q 039015 573 TLAEKLDGTIAILHHGALDMIMKILDSC 600 (685)
Q Consensus 573 ~La~~~~~~~~i~~~g~v~~Lv~lL~~~ 600 (685)
+|+..+.+..++.+.-.+..++.-++..
T Consensus 701 tL~t~~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 701 TLMTVDASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred hhccccHHHHHHHHhcCHHHHHHHHHHh
Confidence 9999888888888877788888866653
No 344
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=66.22 E-value=2.2e+02 Score=31.69 Aligned_cols=184 Identities=13% Similarity=0.131 Sum_probs=97.9
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhhcCCc-hhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchhH
Q 039015 380 LANFISDRLLEG-TSEEKNKVAYEVRLLTKSSIF-NRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSKS 456 (685)
Q Consensus 380 ~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~-~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~ 456 (685)
.+..++..++.. ..+.+..|+..|..+...+.+ .+.... ...+..++..|+. .+...+..|+++|..+..+...|-
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 355555555443 456788899887776544422 222211 1235567788877 788999999999998886654432
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHH-HHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015 457 MVVESGGLDFIVDMVKKGLKVEARQHAA-ATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH 535 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa-~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 535 (685)
.=-..-+|..+++.-++. ..++-..|. .++.-|+.+.... .|..+..++...+...-..++..+-.|+..
T Consensus 366 ~DstE~ai~K~Leaa~ds-~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDS-QDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred hchHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhh
Confidence 111233455556655555 444433333 3344455444322 234444555554443333344444444321
Q ss_pred CCcHHHH--HhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 039015 536 SGNHWRF--LAAGAVPLLLNLLTSSDSEELITDSLAVLATLA 575 (685)
Q Consensus 536 ~~n~~~i--v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La 575 (685)
-. ...+ +=..+.|.+++-- .+.+..++..|+-+|..+.
T Consensus 437 l~-~EeL~~ll~diaP~~iqay-~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 437 LS-AEELLNLLPDIAPCVIQAY-DSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred cC-HHHHHHhhhhhhhHHHHHh-cCchHHhhhhHHHhHHHHH
Confidence 11 1111 1234566677766 4455667776666665553
No 345
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=66.20 E-value=31 Score=32.14 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=59.6
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHHHhh
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQ-GSSRASKKASALIRILHEFY 664 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~-g~~~~k~~A~~lL~~l~~~~ 664 (685)
+..|.+=|.++ ++.++-.|+.+|-.+..++|......+.. ..++.-|..++.. ....+++++..+++......
T Consensus 39 ~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas-k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 39 LKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVAS-RDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 55666666676 99999999999999999999888877776 6788899999988 67888999888887765543
No 346
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.50 E-value=3.3 Score=42.12 Aligned_cols=31 Identities=16% Similarity=0.405 Sum_probs=24.0
Q ss_pred CcccccHHHHHHHHHc------------CCCCCCCCCccccCC
Q 039015 298 TGHTYDRASILKWFRA------------GNSTCPKTGERLQSK 328 (685)
Q Consensus 298 cghtfcr~ci~~~~~~------------~~~~CP~c~~~l~~~ 328 (685)
|....|++|+-+||.. |..+||.|++.+.-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 3445799999999963 677999999987543
No 347
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=65.36 E-value=27 Score=33.80 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=32.5
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCC-CcccHHHHhhHHHHHHh
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKE-LLVNLVLKRIIQDWSVD 346 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~-l~~n~~l~~~i~~~~~~ 346 (685)
+..|.||.|..-+. |.- -+. ..|.||.|+..+...+ -..-..++..|....+.
T Consensus 115 ~~~Y~Cp~C~~ryt----------f~e-----A~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~ 168 (178)
T PRK06266 115 NMFFFCPNCHIRFT----------FDE-----AME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEE 168 (178)
T ss_pred CCEEECCCCCcEEe----------HHH-----Hhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHH
Confidence 46799998874332 322 223 3799999999986542 22234566666666444
No 348
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=64.77 E-value=13 Score=40.83 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=95.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhccccC----cch----hHHHHhcCcHHHHHHHhc--CCCCHHHHHHHHHHHHHh
Q 039015 421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKH----CKS----KSMVVESGGLDFIVDMVK--KGLKVEARQHAAATLFYI 490 (685)
Q Consensus 421 G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~----~~~----k~~i~~~g~i~~Lv~lL~--~~~~~e~~~~Aa~~L~~L 490 (685)
.+...++..|.+..-..|+++.+++.|++.- -.+ ..++.. --+..++..-. ...+..++.+|...|.|+
T Consensus 433 ~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnl 511 (728)
T KOG4535|consen 433 DAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNL 511 (728)
T ss_pred HHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhH
Confidence 4455566666666778899999999998621 122 222221 11222222211 222567888999999998
Q ss_pred cCchh------HHHHhhcCCCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCcHHHH--HhcCChHHHHHHhccCCCh
Q 039015 491 ASIEE------YRKLIGENPEAIPALVDMV-RDGTDRSKKNALVAIFGLLMHSGNHWRF--LAAGAVPLLLNLLTSSDSE 561 (685)
Q Consensus 491 s~~~~------~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~~n~~~i--v~~G~v~~Lv~lL~~~~~~ 561 (685)
+..=+ +++.+ .|.+..+.... -.+...++-+|+.++.||-.++..+-.= ...-+.+.|..++.+..+-
T Consensus 512 lQvlq~i~~~~~~e~~---~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NF 588 (728)
T KOG4535|consen 512 LQFLQPIEKPTFAEII---EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNF 588 (728)
T ss_pred HHHHHHhhhccHHHHH---HHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccc
Confidence 75432 22222 23344444432 2456788999999999999887643221 2233678888888666788
Q ss_pred hHHHHHHHHHHHHhcC
Q 039015 562 ELITDSLAVLATLAEK 577 (685)
Q Consensus 562 ~~~~~al~~L~~La~~ 577 (685)
.++..|+++|..-+.-
T Consensus 589 KVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 589 KVRIRAAAALSVPGKR 604 (728)
T ss_pred eEeehhhhhhcCCCCc
Confidence 8889999998877664
No 349
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=63.71 E-value=1.8e+02 Score=29.91 Aligned_cols=222 Identities=15% Similarity=0.061 Sum_probs=126.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcchhHHHHh
Q 039015 383 FISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKSKSMVVE 460 (685)
Q Consensus 383 ~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~i~~ 460 (685)
.|-..|.+.++..|.+|+..|......-+... ....-+..|+.++.+ .|......++.++..|.....-.... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-A 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-H
Confidence 34567788899999999999988765443221 223336677776655 56666666677766665332211111 1
Q ss_pred cCcHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCC
Q 039015 461 SGGLDFIVDMVKK-GLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRD-GTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 461 ~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~ 537 (685)
...+..+.+-..- ......|..+..+|..|..+. +.-..++ .+.+..+++++.. .+|+....+-..+..+...-+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 1112222221111 114566778888888876543 2223333 4578888888865 468877777776666654333
Q ss_pred cHHHHHhcCChHHHHHHhc--------c---CCChhHHH-HHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhH
Q 039015 538 NHWRFLAAGAVPLLLNLLT--------S---SDSEELIT-DSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAG 605 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~--------~---~~~~~~~~-~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~ 605 (685)
. ...++-+.+.+. . ++..-..+ -..++...|+.++.- ..-.+|.|++=|.++ ++.+
T Consensus 157 -----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~-~~~~ 224 (262)
T PF14500_consen 157 -----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDST-SPSV 224 (262)
T ss_pred -----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCC-CcHH
Confidence 1 334444555553 1 11111222 233344445554432 223579999988887 8899
Q ss_pred HHHHHHHHHHHhccCcH
Q 039015 606 KEYCVSLLLALCINGGA 622 (685)
Q Consensus 606 ~e~a~~~L~~L~~~~~~ 622 (685)
|.-++.+|...+..-+.
T Consensus 225 K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 225 KLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHHHHHHHHHHHCCH
Confidence 99999999887765433
No 350
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=63.37 E-value=32 Score=32.70 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=70.8
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcC--ChHHHHHHhccCCChhHHHHHHHHHHHHhcC----hh
Q 039015 506 AIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAG--AVPLLLNLLTSSDSEELITDSLAVLATLAEK----LD 579 (685)
Q Consensus 506 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G--~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~----~~ 579 (685)
.+..+..+|++.++..+-.++..+.-++.+.+ ...+.+.| -+..|+.+|+..++..+.+.++.+|..|... ++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 56677788888889889888888877765543 34444443 4777899997666777888888888877653 33
Q ss_pred cHHHHHhcCChHHHHH-HhhcCCChhHHHHHHHHHHHHhcc
Q 039015 580 GTIAILHHGALDMIMK-ILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 580 ~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
-..++.. ..++.++. +++-.+.....+.++.+|..+-..
T Consensus 105 l~Rei~t-p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 105 LTREIAT-PNLPKFIQSLLQLLQDSSCPETALDALATLLPH 144 (165)
T ss_pred hHHHHhh-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3333332 23555555 444321235556666666665543
No 351
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=63.34 E-value=1.9e+02 Score=35.37 Aligned_cols=151 Identities=15% Similarity=0.078 Sum_probs=94.6
Q ss_pred hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHH
Q 039015 420 VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKL 499 (685)
Q Consensus 420 ~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 499 (685)
.++|..|+..|++.|..++..|++.++.++...+ .. ....+|..++.++.-..+..+-..|+-+|..|+.-.=....
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp-~~--Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP-PE--LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc-HH--HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 3567888889999999999999999999987665 22 23456777888777664566677888888888764321111
Q ss_pred hhcCCCcHHHHHHHhccC--------CHHHHHHHHHHHHHhcCCC-Cc-HHHHHhcCChHHHHHHhccCCChhHHHHHHH
Q 039015 500 IGENPEAIPALVDMVRDG--------TDRSKKNALVAIFGLLMHS-GN-HWRFLAAGAVPLLLNLLTSSDSEELITDSLA 569 (685)
Q Consensus 500 i~~~~g~i~~Lv~lL~~~--------~~~~~~~A~~aL~nLs~~~-~n-~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~ 569 (685)
.. ..++|.++.-|.-. ...++..|+-+.|.++... .+ -..++..=+-..|...+ -|..-..+..|.+
T Consensus 417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~Al-FDrevncRRAAsA 493 (1133)
T KOG1943|consen 417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVAL-FDREVNCRRAASA 493 (1133)
T ss_pred HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHh-cCchhhHhHHHHH
Confidence 11 23566666655321 1346778888888887432 22 12233322222233334 4666778888888
Q ss_pred HHHHHhc
Q 039015 570 VLATLAE 576 (685)
Q Consensus 570 ~L~~La~ 576 (685)
+|.-..+
T Consensus 494 AlqE~VG 500 (1133)
T KOG1943|consen 494 ALQENVG 500 (1133)
T ss_pred HHHHHhc
Confidence 8776544
No 352
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=63.29 E-value=86 Score=29.65 Aligned_cols=138 Identities=11% Similarity=0.117 Sum_probs=79.6
Q ss_pred CcHHHHHHHhccC-CHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHH
Q 039015 505 EAIPALVDMVRDG-TDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIA 583 (685)
Q Consensus 505 g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~ 583 (685)
..++.|+.+|+++ +...+..++++|..|-.-+..+-+.+..+.- ..-..+.+....+..+ .+.... ..-++
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~----~~~~~~~~~~~~~~~l---~~~~~~-~~~ee 81 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD----SKSSENSNDESTDISL---PMMGIS-PSSEE 81 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC----ccccccccccchhhHH---hhccCC-CchHH
Confidence 4567788888876 4788999999999886666555443322111 0000011111111111 111111 12333
Q ss_pred HHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHH
Q 039015 584 ILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKA 653 (685)
Q Consensus 584 i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A 653 (685)
..-.-++..|+.+|++.+-..-...++.++..+...-+..+...+-+ ++|.++..++++++..++.-
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~---viP~~l~~i~~~~~~~~e~~ 148 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQ---VIPIFLRVIRTCPDSLREFY 148 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHH---HhHHHHHHHHhCCHHHHHHH
Confidence 44444578888888876333344467888888776555566665543 69999999998888666543
No 353
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=63.07 E-value=4.2 Score=39.56 Aligned_cols=46 Identities=17% Similarity=0.416 Sum_probs=37.8
Q ss_pred ccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 281 FTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 281 ~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
..|.+|..+...-+.- +||-.|.+.|+..++.+ ...||.|+--.++
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 6899999998876654 68888999999999998 8899999754443
No 354
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=62.57 E-value=22 Score=30.34 Aligned_cols=71 Identities=18% Similarity=0.082 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC 452 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~ 452 (685)
.....+..|.+..+.+|..++..|+.|..... ...+-..+.+..+...|.++|+=+-.+|+..|..|+...
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 34566778888888899999999999997543 122223466777778888899999999999999887543
No 355
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=62.24 E-value=34 Score=29.59 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=63.7
Q ss_pred HHHHHHHHHH-HHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhc
Q 039015 478 EARQHAAATL-FYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT 556 (685)
Q Consensus 478 e~~~~Aa~~L-~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~ 556 (685)
|+|..|..-+ +.|...--....+....+.+..|+++....+...+..++..|..|..++.....+.+-|++..|-++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr- 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLR- 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHH-
Confidence 3455444333 33332222233333335678888888888777788899999999999999999999999999977665
Q ss_pred cCCChhHHHHHHHHHH
Q 039015 557 SSDSEELITDSLAVLA 572 (685)
Q Consensus 557 ~~~~~~~~~~al~~L~ 572 (685)
...++......-.++.
T Consensus 81 ~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 81 PNVEPNLQAEIDEILD 96 (98)
T ss_pred hcCCHHHHHHHHHHHh
Confidence 4445555555555543
No 356
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=61.31 E-value=20 Score=42.23 Aligned_cols=132 Identities=13% Similarity=0.138 Sum_probs=92.9
Q ss_pred HHHhhCCHHHHHHhhcC--------CCHHHHHHHHHHhhccccCcchhHHHHh-------c-CcHHHHHHHhcC--C-CC
Q 039015 416 CLVEVGCIPSLLKLLSS--------KDSSTQENAIAALLNLSKHCKSKSMVVE-------S-GGLDFIVDMVKK--G-LK 476 (685)
Q Consensus 416 ~i~~~G~ip~Lv~lL~s--------~~~~~~~~A~~aL~nLs~~~~~k~~i~~-------~-g~i~~Lv~lL~~--~-~~ 476 (685)
-+.+.|++-.++.+... +..+....|+.+|+.+..-++.+..++. + .++..|+..-.- . .+
T Consensus 596 nflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D 675 (1516)
T KOG1832|consen 596 NFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD 675 (1516)
T ss_pred HHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence 45566777777776654 3467888999999999988888776652 1 244444443221 1 26
Q ss_pred HHHHHHHHHHHHHhcCch-hHHHHhh----------------------------------cCCCcHHHHHHHhccCC---
Q 039015 477 VEARQHAAATLFYIASIE-EYRKLIG----------------------------------ENPEAIPALVDMVRDGT--- 518 (685)
Q Consensus 477 ~e~~~~Aa~~L~~Ls~~~-~~~~~i~----------------------------------~~~g~i~~Lv~lL~~~~--- 518 (685)
++.+..|..+|-|+...+ +++..+. ....+|..|+.||+-..
T Consensus 676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t 755 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPT 755 (1516)
T ss_pred HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 899999999999987666 4433221 14578999999997533
Q ss_pred --HHHHHHHHHHHHHhcCCCCcHHHHHhcCC
Q 039015 519 --DRSKKNALVAIFGLLMHSGNHWRFLAAGA 547 (685)
Q Consensus 519 --~~~~~~A~~aL~nLs~~~~n~~~iv~~G~ 547 (685)
+..++-|+.+|..|+.++..++.+.+--.
T Consensus 756 ~aD~IRalAc~~L~GLaR~~tVrQIltKLpL 786 (1516)
T KOG1832|consen 756 TADCIRALACRVLLGLARDDTVRQILTKLPL 786 (1516)
T ss_pred cHHHHHHHHHHHHhccccCcHHHHHHHhCcc
Confidence 46788999999999999998887766443
No 357
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=61.30 E-value=5.3 Score=42.81 Aligned_cols=29 Identities=21% Similarity=0.548 Sum_probs=22.3
Q ss_pred cccHHHHHHHHHc------------CCCCCCCCCccccCCC
Q 039015 301 TYDRASILKWFRA------------GNSTCPKTGERLQSKE 329 (685)
Q Consensus 301 tfcr~ci~~~~~~------------~~~~CP~c~~~l~~~~ 329 (685)
..|..|+-+||.. |...||.||+.+.-.+
T Consensus 314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 3477899999974 4568999999876443
No 358
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=60.51 E-value=2.7e+02 Score=31.25 Aligned_cols=252 Identities=16% Similarity=0.137 Sum_probs=121.6
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 380 LANFISDRLL--EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 380 ~i~~Lv~~L~--s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
.|..+++.|- ..+.+.|..+...|..+.+... .+......-....+ -....++.-..-+.+|..|+.+..+= .
T Consensus 28 ~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~-~~~~~~R~~fF~~I---~~~~~~~d~~~~l~aL~~LT~~Grdi-~ 102 (464)
T PF11864_consen 28 EIWYAAKDLIDPNQPSEARRAALELLIACIKRQD-SSSGLMRAEFFRDI---SDPSNDDDFDLRLEALIALTDNGRDI-D 102 (464)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHH---hcCCCchhHHHHHHHHHHHHcCCcCc-h
Confidence 3566666662 3356778888887887776443 22111111111111 11223333334455555566444332 2
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC----chh-HHHHhhcCCC----cHHHHHHHhccC----CHHHHHH
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS----IEE-YRKLIGENPE----AIPALVDMVRDG----TDRSKKN 524 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~----~~~-~~~~i~~~~g----~i~~Lv~lL~~~----~~~~~~~ 524 (685)
..+.+..+.|..-|... . .++..-...+. .+. ....+..+.+ .+..++.+++-. ++.....
T Consensus 103 ~~~~~i~~~L~~wl~~~-~-----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~ 176 (464)
T PF11864_consen 103 FFEYEIGPFLLSWLEPS-Y-----QAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISS 176 (464)
T ss_pred hcccchHHHHHHHHHHH-H-----HHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 24677777777777533 1 11111111111 110 0000000122 344444444421 2334444
Q ss_pred HHHHHHHhcCCCCcH----------HHHHhcCChH-----HHHHHhcc-CCChhHHHHHHHHHHHHhcChhcHHHHHhcC
Q 039015 525 ALVAIFGLLMHSGNH----------WRFLAAGAVP-----LLLNLLTS-SDSEELITDSLAVLATLAEKLDGTIAILHHG 588 (685)
Q Consensus 525 A~~aL~nLs~~~~n~----------~~iv~~G~v~-----~Lv~lL~~-~~~~~~~~~al~~L~~La~~~~~~~~i~~~g 588 (685)
.+.-+..+|....+. ..++..|.|| .++..|-+ .....+...+..++.||+.+..|..++
T Consensus 177 lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i---- 252 (464)
T PF11864_consen 177 LVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAI---- 252 (464)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHHH----
Confidence 445555555433321 1234455444 35555521 122467788899999999877766554
Q ss_pred ChHHHHHHhhcC-----CChhHHHHHHHHHHHHhccCcHHHHHHHHhcCC--cHHHHHHHHhcCChHH
Q 039015 589 ALDMIMKILDSC-----TSRAGKEYCVSLLLALCINGGANVVALLVKSPS--LMGSLYSLLSQGSSRA 649 (685)
Q Consensus 589 ~v~~Lv~lL~~~-----~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g--~i~~L~~Ll~~g~~~~ 649 (685)
..|..+|... .+.....-|+.+|..+..+.+++....+.- .- +++.|..-++.++++.
T Consensus 253 --~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~-~~~~vl~sl~~al~~~~~~v 317 (464)
T PF11864_consen 253 --RTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF-SPSSVLPSLLNALKSNSPRV 317 (464)
T ss_pred --HHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc-cHHHHHHHHHHHHhCCCCee
Confidence 4577777321 133444567888877776654333333322 22 6777777777766553
No 359
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.51 E-value=7.2 Score=39.61 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=46.5
Q ss_pred CCCCccCcCccccCCCceeccC----cccccHHHHHHHHHc----CCCCCCCCC-ccccCCCCcccHHHHhhHHHHH
Q 039015 277 TPDDFTCPISLEIMKDPVTLST----GHTYDRASILKWFRA----GNSTCPKTG-ERLQSKELLVNLVLKRIIQDWS 344 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~dPv~~~c----ghtfcr~ci~~~~~~----~~~~CP~c~-~~l~~~~l~~n~~l~~~i~~~~ 344 (685)
...-++|-+|.+-++|-.++.| .|.||--|-.+.++. |.-.||.-. .+|. ..-+|.-.|+.-|....
T Consensus 265 ~~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLv-gS~vPWAFMQGEIatIL 340 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLV-GSNVPWAFMQGEIATIL 340 (352)
T ss_pred CCCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCccc-CCcccHHHhhhhHHHHh
Confidence 3445999999999999988865 799999999888875 344676521 1232 24466666777776553
No 360
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=59.89 E-value=22 Score=42.23 Aligned_cols=145 Identities=13% Similarity=0.162 Sum_probs=99.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH--hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh-HH
Q 039015 421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV--ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE-YR 497 (685)
Q Consensus 421 G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~--~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~ 497 (685)
..+|.|++...+.+...+.+=+.+|.++-.+-+- ..+. -+..+|.|++.|.-. +.++|..+..++--+....+ ..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhccccc
Confidence 5689999888866666666777777666554433 3333 267799999999988 88998888888766543222 11
Q ss_pred HHhhcCCCcHHHHHHHhccCC---HHHHHHHHHHHHHhcC-CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHH
Q 039015 498 KLIGENPEAIPALVDMVRDGT---DRSKKNALVAIFGLLM-HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAV 570 (685)
Q Consensus 498 ~~i~~~~g~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~ 570 (685)
..- - ...||.++.+=++.+ ..++..|+.+|..|.. -+.+.-.--+-.++..|...| +|+..-++.+|+.+
T Consensus 945 t~~-~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~L-dDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEH-L-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKIL-DDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHH-H-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhcc-CcHHHHHHHHHHHH
Confidence 111 1 236777777765544 5678899999999987 444444444555777899999 66666777777765
No 361
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=59.58 E-value=1.3e+02 Score=34.95 Aligned_cols=255 Identities=16% Similarity=0.140 Sum_probs=143.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcC
Q 039015 383 FISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESG 462 (685)
Q Consensus 383 ~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g 462 (685)
.++..+...+.+++.+-..-|..-. +.--+.++..-.+|.|+..+...+ .....+..+..+...-+... ...+
T Consensus 258 ~fLeel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~ 330 (690)
T KOG1243|consen 258 LFLEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVR 330 (690)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccc
Confidence 3345556667777777666655522 233455666777888888776655 33344444444443332222 6778
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHH
Q 039015 463 GLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWR 541 (685)
Q Consensus 463 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 541 (685)
.++.|+++++.. +..+|..- |.++-. .+..-..+.+ ..++|.+..-+.+.++-.+..++.++..|+.-=.-+
T Consensus 331 i~p~l~kLF~~~-Dr~iR~~L---L~~i~~~i~~Lt~~~~~-d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 331 IIPVLLKLFKSP-DRQIRLLL---LQYIEKYIDHLTKQILN-DQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred hhhhHHHHhcCc-chHHHHHH---HHhHHHHhhhcCHHhhc-chhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--
Confidence 999999999988 66666533 333311 1122334445 678999999999999999999999888876321111
Q ss_pred HHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCC-hHHHHHHhhcCCChhHHHHHHHHHHHHhccC
Q 039015 542 FLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGA-LDMIMKILDSCTSRAGKEYCVSLLLALCING 620 (685)
Q Consensus 542 iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~ 620 (685)
.+....+..|-.+- .+.+.+++....-+|..++.+-.. ..+.+. +.+...-+++. -+..+..++.+|+..+..-
T Consensus 404 ~Ln~Ellr~~ar~q-~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdp-f~paR~a~v~~l~at~~~~ 478 (690)
T KOG1243|consen 404 NLNGELLRYLARLQ-PDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDP-FVPARKAGVLALAATQEYF 478 (690)
T ss_pred hhcHHHHHHHHhhC-ccccCcccccceeeecccccccch---hhhccccchhhhhhhcCC-CCCchhhhhHHHhhccccc
Confidence 11111222333332 466777888877777777765221 113333 23333345544 4455666666666655432
Q ss_pred cHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015 621 GANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH 661 (685)
Q Consensus 621 ~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 661 (685)
+.. .+- .-+.|.+..+.-+.+.-.+..|-..++.+.
T Consensus 479 ~~~--~va---~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 479 DQS--EVA---NKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred chh--hhh---hhccccccccccCcccchhhHHHHHHHHHH
Confidence 211 111 123556666666655555555554444443
No 362
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=59.57 E-value=68 Score=40.45 Aligned_cols=140 Identities=11% Similarity=0.072 Sum_probs=93.3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch--hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCchhHH
Q 039015 421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS--KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFY-IASIEEYR 497 (685)
Q Consensus 421 G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~--k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~~~~~ 497 (685)
+.+..++..|..+...++..|+.+|.++..-+.. ....+..|+... +... +..+|+.|+..+.. ...+++.-
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R----~~Ds-sasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR----LNDS-SASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh----hccc-hhHHHHHHHHHHhhhhhccHHHH
Confidence 6688888999988999999999999998755533 333344444433 3334 68899999888863 33344433
Q ss_pred HHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhc--cCCChhHHHHHHHHHHHHh
Q 039015 498 KLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT--SSDSEELITDSLAVLATLA 575 (685)
Q Consensus 498 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~--~~~~~~~~~~al~~L~~La 575 (685)
.. ....+..-+.+....+++.+++.|.-+|...++-..+++. .+++|. +|+...+.+.+..++.++=
T Consensus 891 ~q------yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~-----cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 891 FQ------YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDM-----CAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred HH------HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHH-----HHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 22 3445666666777889999999999999877655544432 444443 2333337777777777764
Q ss_pred c
Q 039015 576 E 576 (685)
Q Consensus 576 ~ 576 (685)
.
T Consensus 960 F 960 (1692)
T KOG1020|consen 960 F 960 (1692)
T ss_pred c
Confidence 3
No 363
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=59.50 E-value=72 Score=27.60 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhhcCCchhhHHH-hhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhc
Q 039015 394 EEKNKVAYEVRLLTKSSIFNRSCLV-EVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVK 472 (685)
Q Consensus 394 ~~~~~a~~~L~~La~~~~~~r~~i~-~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~ 472 (685)
++|.+|+..|..=-.++--.-..+. +.+.+..|+.-...+....++.++..|..|..++.+...+.+-|+++.+-++=.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 4566666554332222222222333 334455566656667777899999999999999999999999999999766654
Q ss_pred CCCCHHHHHHHHHHH
Q 039015 473 KGLKVEARQHAAATL 487 (685)
Q Consensus 473 ~~~~~e~~~~Aa~~L 487 (685)
.- ++..+...-.++
T Consensus 82 ~~-~~~~~~~id~il 95 (98)
T PF14726_consen 82 NV-EPNLQAEIDEIL 95 (98)
T ss_pred cC-CHHHHHHHHHHH
Confidence 44 555555444443
No 364
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=59.13 E-value=5.7 Score=40.67 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=35.1
Q ss_pred CccCcCccccCCC-ce--eccCcccccHHHHHHHHHc----------------------CCCCCCCCCccccC
Q 039015 280 DFTCPISLEIMKD-PV--TLSTGHTYDRASILKWFRA----------------------GNSTCPKTGERLQS 327 (685)
Q Consensus 280 ~~~CpIc~~~m~d-Pv--~~~cghtfcr~ci~~~~~~----------------------~~~~CP~c~~~l~~ 327 (685)
.-.|.||+.=|.+ |. .++|-|.|...|+-+|+.. ....||+|+..+..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 5789999976664 42 3489999999999887753 12359999887653
No 365
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=59.00 E-value=50 Score=30.14 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=57.9
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhc---CChHHHHHHHHHHHHHHHhhcc
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQ---GSSRASKKASALIRILHEFYER 666 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~---g~~~~k~~A~~lL~~l~~~~~~ 666 (685)
+..|.+-|+++ ++.++-.|+.+|-.+..+++......+.. ...+.-|..++.. .++.+++++..++.........
T Consensus 39 ~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s-~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 39 ARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVAD-KEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhh-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 56677777777 99999999999999999998877766665 4556668888876 3667899988888877665443
No 366
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=58.98 E-value=6.7 Score=40.88 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=37.9
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHHHc-CCCCCCCCCccc
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA-GNSTCPKTGERL 325 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~-~~~~CP~c~~~l 325 (685)
++.-.|-||-+-..--..+||||..|..|-.+.-.- ....||.|+..-
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 566889999998887778899999999997664431 367899998653
No 367
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.78 E-value=9.2 Score=42.72 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=30.7
Q ss_pred CCCccCcCccccCCC-ceeccCcccccHHHHHHHHHc
Q 039015 278 PDDFTCPISLEIMKD-PVTLSTGHTYDRASILKWFRA 313 (685)
Q Consensus 278 ~~~~~CpIc~~~m~d-Pv~~~cghtfcr~ci~~~~~~ 313 (685)
.....|.||.+-..+ .+.+.|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 566999999998886 555689999999999999874
No 368
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=57.65 E-value=2.6e+02 Score=29.60 Aligned_cols=220 Identities=17% Similarity=0.124 Sum_probs=151.3
Q ss_pred HHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hHH----HH-hcCcHHHHHHHhcCCC-CHHHHHHHHHHHH
Q 039015 416 CLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KSM----VV-ESGGLDFIVDMVKKGL-KVEARQHAAATLF 488 (685)
Q Consensus 416 ~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~----i~-~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~ 488 (685)
.+..+|..+.|+.-|..-+-+.+..+..+..|+-...-+ |.. +. ....+..++.- -. ..+....+-..|.
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNMLR 150 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHHH
Confidence 466789999999999888888899999888888655433 322 22 23334444333 22 2566666666777
Q ss_pred HhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-cHHHHHhcCC----hHHHHHHhccCCChhH
Q 039015 489 YIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG-NHWRFLAAGA----VPLLLNLLTSSDSEEL 563 (685)
Q Consensus 489 ~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~----v~~Lv~lL~~~~~~~~ 563 (685)
....++-..+.|-. ..-+......++.++-+...+|..+...|...+. ....+..... .+.--.++ .+.+--.
T Consensus 151 Ecirhe~LakiiL~-s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll-~s~Nyvt 228 (342)
T KOG1566|consen 151 ECIRHEFLAKIILE-STNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLL-RSENYVT 228 (342)
T ss_pred HHHhhHHHHHHHHc-chhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHh-cccceeh
Confidence 77777777777766 7788888999998888888888888888765443 4444544443 22234455 5556667
Q ss_pred HHHHHHHHHHHhcChhcHHHH----HhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccC--cHHHHHHHHhcCCcHHH
Q 039015 564 ITDSLAVLATLAEKLDGTIAI----LHHGALDMIMKILDSCTSRAGKEYCVSLLLALCING--GANVVALLVKSPSLMGS 637 (685)
Q Consensus 564 ~~~al~~L~~La~~~~~~~~i----~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~--~~~~~~~l~~~~g~i~~ 637 (685)
+..++.+|..+-.+..+...+ .....+..++.+|+.. +...+-.|--+-+....+. ++.++..+.+ . -+.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvAnpnK~q~V~~IL~~-N--r~K 304 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVANPNKPQPVRDILVR-N--RPK 304 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhcCCCCCchHHHHHHh-C--cHH
Confidence 788999999887765554443 2224588899999998 8899999998888877654 3557777776 3 567
Q ss_pred HHHHHhc
Q 039015 638 LYSLLSQ 644 (685)
Q Consensus 638 L~~Ll~~ 644 (685)
|++++++
T Consensus 305 Ll~~l~~ 311 (342)
T KOG1566|consen 305 LLELLHD 311 (342)
T ss_pred HHHHHHH
Confidence 7777765
No 369
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=57.59 E-value=4.9 Score=29.38 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=20.8
Q ss_pred cCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 297 STGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 297 ~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
...|..|..|+...+.. ...||+|+.+++.
T Consensus 18 C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp -SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred ecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 44588899999988876 7789999999875
No 370
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=57.46 E-value=6.2 Score=30.98 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=9.7
Q ss_pred cccHHHHHHHHHc
Q 039015 301 TYDRASILKWFRA 313 (685)
Q Consensus 301 tfcr~ci~~~~~~ 313 (685)
.|||.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999975
No 371
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=57.29 E-value=56 Score=30.18 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=57.9
Q ss_pred ChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhc------CChHHHHHHHHHHHHHHH
Q 039015 589 ALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQ------GSSRASKKASALIRILHE 662 (685)
Q Consensus 589 ~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~------g~~~~k~~A~~lL~~l~~ 662 (685)
++..|.+-|.++ ++.+.-.|+.+|-.+..++|......+.. -+++.-|+.++.. .+..++.+...++..-..
T Consensus 39 a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas-~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGK-FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 355677767777 89999999999999999998888888776 6778888888853 356788888888777655
Q ss_pred hh
Q 039015 663 FY 664 (685)
Q Consensus 663 ~~ 664 (685)
..
T Consensus 117 ~f 118 (139)
T cd03567 117 EL 118 (139)
T ss_pred Hh
Confidence 43
No 372
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=57.28 E-value=55 Score=30.33 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=59.0
Q ss_pred ChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHHHhh
Q 039015 589 ALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQ-GSSRASKKASALIRILHEFY 664 (685)
Q Consensus 589 ~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~-g~~~~k~~A~~lL~~l~~~~ 664 (685)
++..|.+=|.++ ++.++-.|+.+|-.+..++|......+.. .+++.-|..++.. .++.+++++..++..-....
T Consensus 42 a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTHFHDEVAS-REFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 356677766777 99999999999999999988887777776 7788899999875 46688889888887766544
No 373
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=57.05 E-value=3.6e+02 Score=31.14 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=52.6
Q ss_pred chhhHHHHHHHHHhhHHhHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhccCcchhHhHHhhh------HHHHHH
Q 039015 51 NKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSD------RVSNQL 124 (685)
Q Consensus 51 ~k~~~~~l~r~l~lL~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~------~i~~~f 124 (685)
.+++-.+..+++..+.--++||...+. .+.--.-|+.-+..|..+..+.+.+. ..+.++.++ .+...+
T Consensus 180 l~~~~~~~~~eld~L~~ql~ELe~~~l--~~~E~e~L~~e~~~L~n~e~i~~~~~----~~~~~L~~~~~~~~~~~~~~l 253 (563)
T TIGR00634 180 RQQKEQELAQRLDFLQFQLEELEEADL--QPGEDEALEAEQQRLSNLEKLRELSQ----NALAALRGDVDVQEGSLLEGL 253 (563)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhCCc--CCCcHHHHHHHHHHHhCHHHHHHHHH----HHHHHHhCCccccccCHHHHH
Confidence 345567788899999999999986653 34446667777788888888888777 334444443 455666
Q ss_pred HHHHHHHHHH
Q 039015 125 RLFIRAIGTA 134 (685)
Q Consensus 125 ~~~~~~l~~~ 134 (685)
..+.+.+...
T Consensus 254 ~~~~~~l~~~ 263 (563)
T TIGR00634 254 GEAQLALASV 263 (563)
T ss_pred HHHHHHHHHh
Confidence 6555555444
No 374
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=56.61 E-value=38 Score=32.24 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=65.7
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCC-HHHHHHHHHHHHHhcCCCCcHHH
Q 039015 463 GLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT-DRSKKNALVAIFGLLMHSGNHWR 541 (685)
Q Consensus 463 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~~n~~~ 541 (685)
.+..+..+|++. +.+.|-.++..+.-.+........+..-...+..|+.+|+..+ ...++.|+.+|..|...-.....
T Consensus 26 l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 455577788877 7888888877777776654332222221347889999998755 56677777777776544333333
Q ss_pred HHhc-------CChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 039015 542 FLAA-------GAVPLLLNLLTSSDSEELITDSLAVLATLAE 576 (685)
Q Consensus 542 iv~~-------G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~ 576 (685)
+.+. +.++.+++++. + ....+.++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~-~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQ-D--SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHh-c--cccHHHHHHHHHHHHH
Confidence 3322 23445555552 1 3455566666665533
No 375
>PF14353 CpXC: CpXC protein
Probab=56.57 E-value=6.9 Score=35.52 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=30.3
Q ss_pred CccCcCccccCCCceeccCcccccHHHHHHHHHcC--CCCCCCCCcccc
Q 039015 280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAG--NSTCPKTGERLQ 326 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~--~~~CP~c~~~l~ 326 (685)
+.+||-|+..+.-.+-..-.-.....-.++-+... ..+||.|+....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 36899999998877655433333444445555321 458999998764
No 376
>PRK14707 hypothetical protein; Provisional
Probab=56.52 E-value=6.4e+02 Score=33.85 Aligned_cols=226 Identities=16% Similarity=0.079 Sum_probs=115.9
Q ss_pred CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhh-ccccCcchhHHHHhcCcHHHHH
Q 039015 391 GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALL-NLSKHCKSKSMVVESGGLDFIV 468 (685)
Q Consensus 391 ~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~-nLs~~~~~k~~i~~~g~i~~Lv 468 (685)
.+......|+..|..-.-++++-|..+--.| +..++.-|+. ++..+...|+..|. -|+.+.+-+..+--.+ |..++
T Consensus 386 p~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~L 463 (2710)
T PRK14707 386 PDTPVCAAAASALAEHVVDDLELRKGLDPQG-VSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQAL 463 (2710)
T ss_pred CCchHHHHHHHHHHHHhccChhhhhhcchhh-HHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHH
Confidence 3445566666666543335666666665555 4444444444 67777777777764 4444444454443222 44444
Q ss_pred HHhcCCCCHHHHHHHHHHH-HHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCC
Q 039015 469 DMVKKGLKVEARQHAAATL-FYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGA 547 (685)
Q Consensus 469 ~lL~~~~~~e~~~~Aa~~L-~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~ 547 (685)
..|++=.+...-..|+..| ..|+...+.+..+-- .++...|-.+-+-++...-..|+..|..=...+.........--
T Consensus 464 nalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~-q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~ 542 (2710)
T PRK14707 464 DALSKWPDTPICGQTASALAARLAHERRLRKALKP-QEVVIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFDAHQ 542 (2710)
T ss_pred HHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCH-HHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHH
Confidence 4454322344444444444 467777777666654 44444554444445543333333333322223333333333333
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015 548 VPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 548 v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
+..+++-|...++...++.+..-|..+..+......-++.-.|..+++-|...+.......|+..|......
T Consensus 543 ~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~ 614 (2710)
T PRK14707 543 VVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEAVNALAERLVD 614 (2710)
T ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Confidence 555566664455566677777666665444444444445556788888555443444444555555444433
No 377
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=55.38 E-value=30 Score=31.93 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-CchhhHHHhhCCHHHHHHhhcC-CCHH---HHHHHHHHhhccc
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSS-IFNRSCLVEVGCIPSLLKLLSS-KDSS---TQENAIAALLNLS 449 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~ip~Lv~lL~s-~~~~---~~~~A~~aL~nLs 449 (685)
+.++..|.+.|.++++.++..|+..|..+.++. +.-+..+....++..|..++.+ .... +++.++..|...+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 446888999999999999999999999999865 3556677777889999998875 3333 7888888776654
No 378
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=55.01 E-value=0.8 Score=36.60 Aligned_cols=41 Identities=24% Similarity=0.446 Sum_probs=22.2
Q ss_pred CccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
+..||.|...|.. .-|+.+|..|-..+.. ...||.|++++.
T Consensus 1 e~~CP~C~~~L~~----~~~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW----QGGHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE----ETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE----eCCEEECcccccccee--cccCCCcccHHH
Confidence 3689999987653 2378888888554322 457999999875
No 379
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=54.61 E-value=14 Score=32.46 Aligned_cols=43 Identities=28% Similarity=0.347 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHH
Q 039015 396 KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQE 439 (685)
Q Consensus 396 ~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~ 439 (685)
-..+++.+..|+. .|+.-..+++.|+++.|+.+|.++|.++..
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3456677888886 778888899999999999999998877654
No 380
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=54.51 E-value=50 Score=30.42 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=56.8
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChH---HHHHHHHHHHHHHHhh
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSR---ASKKASALIRILHEFY 664 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~---~k~~A~~lL~~l~~~~ 664 (685)
+..|.+=|.++ ++.++..|+.+|-.+..++|......+.. ..++..|..++.+. +.. +++++..++.......
T Consensus 44 ~~~l~krl~~~-~~~vq~~aL~lld~lvkNcg~~f~~ev~~-~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 44 ARALRKRLKHG-NPNVQLLALTLLDALVKNCGPRFHREVAS-KEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHTTS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHhH-HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 45566666677 99999999999999999998888777765 56788899988765 333 7888888777766654
No 381
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=53.48 E-value=12 Score=28.40 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=21.7
Q ss_pred cccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 299 GHTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 299 ghtfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
-.|||..|.+..+. ..||.|+..+..+
T Consensus 28 ECTFC~~C~e~~l~---~~CPNCgGelv~R 54 (57)
T PF06906_consen 28 ECTFCADCAETMLN---GVCPNCGGELVRR 54 (57)
T ss_pred eCcccHHHHHHHhc---CcCcCCCCccccC
Confidence 35899999988773 5899999887654
No 382
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=51.33 E-value=9.4 Score=33.33 Aligned_cols=44 Identities=30% Similarity=0.530 Sum_probs=26.4
Q ss_pred Cceec---cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHH
Q 039015 292 DPVTL---STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSV 345 (685)
Q Consensus 292 dPv~~---~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~ 345 (685)
.||.+ +|+ |+||.||++|..- |. +..|+.. .. ..+-.+|..|.+
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~I-----p~-gr~Lt~~--eq-~yiv~vi~~Wi~ 110 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHGI-----PK-GRELTEE--EQ-AYIVDVIMRWIE 110 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhCC-----CC-CCCCCHH--HH-HHHHHHHHHHHh
Confidence 68887 455 6899999999764 21 2333322 11 234466777764
No 383
>PLN03205 ATR interacting protein; Provisional
Probab=51.11 E-value=2.2e+02 Score=30.96 Aligned_cols=116 Identities=11% Similarity=0.106 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh--CCHHHHHHhhc-----CCCHHHHHHHHHHhhcccc-
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV--GCIPSLLKLLS-----SKDSSTQENAIAALLNLSK- 450 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~--G~ip~Lv~lL~-----s~~~~~~~~A~~aL~nLs~- 450 (685)
..++.|+.+..-++....-++++.|..+..+--.++..+-.. --+-.|..++. +....++..|+.++..+..
T Consensus 323 tLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 323 SLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhc
Confidence 346666666677777777777777666554333333322211 11233333332 2334566777777655543
Q ss_pred -Cc-chhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch
Q 039015 451 -HC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE 494 (685)
Q Consensus 451 -~~-~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 494 (685)
+. ..|+.+...-+.+.+.++|++....-++..|.-.||-|--.+
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCp 448 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCP 448 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCc
Confidence 33 238888888899999999986545778888888887664333
No 384
>PLN02189 cellulose synthase
Probab=50.80 E-value=10 Score=45.84 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=35.8
Q ss_pred CccCcCccccCC-----Cceec--cCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 280 DFTCPISLEIMK-----DPVTL--STGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 280 ~~~CpIc~~~m~-----dPv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
.-.|.||++-.. +|-+. .||.-.||.|.+-=.++|+..||.|+....
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 348999998744 34332 478889999997666788999999998765
No 385
>PF06497 DUF1098: Protein of unknown function (DUF1098); InterPro: IPR009477 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf102; it is a family of uncharacterised viral proteins.
Probab=50.57 E-value=1.2e+02 Score=26.13 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=38.5
Q ss_pred cCCCCCChhHHHHHHHHHHHHHhc-ccCCccccchh-hHHHHHHHHHhhHHhHHHHhhcc
Q 039015 19 HPCESISPSTLLISLIDLAHDICT-YKSEFFSTNKR-NALKAIRQVHNLLIFLEELRVES 76 (685)
Q Consensus 19 ~~~~~~~~~~l~~~l~~l~~~i~~-~~~~~~~~~k~-~~~~l~r~l~lL~~lleel~~~~ 76 (685)
-++..+.+.+|+.+|... +.++. +-.+.- .+|+ .+..|+.+-.-++-+|+.|.+..
T Consensus 13 ~~~~~~~~~~lL~~Ln~~-~tva~~IlnD~S-~~K~~sl~~Ls~~S~~aK~il~~Ie~~~ 70 (95)
T PF06497_consen 13 QSPDDINAEDLLQSLNEN-QTVARLILNDTS-ENKRNSLKRLSPQSAGAKKILESIEDDD 70 (95)
T ss_pred cCCCCCCHHHHHHHHHhc-ccHHHHHHcCCC-HhHHHHHHHHhHhhHHHHHHHHHHhcCC
Confidence 444557999999999984 33332 222222 3454 45889999999999999998643
No 386
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=50.24 E-value=4.5e+02 Score=30.26 Aligned_cols=184 Identities=20% Similarity=0.209 Sum_probs=93.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH----H---hcCcHHHHHHHhcCCCCHHHHHHHHHHHHH---h
Q 039015 421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV----V---ESGGLDFIVDMVKKGLKVEARQHAAATLFY---I 490 (685)
Q Consensus 421 G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i----~---~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~---L 490 (685)
..+-.|+++|..-+.+-.+....-+.. .. ...+..+ . ...++..+.+.+.++ .... ..|+.++.. .
T Consensus 311 ~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~-~~~~-~ea~~~~~~~~~~ 386 (574)
T smart00638 311 AKFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNK-KITP-LEAAQLLAVLPHT 386 (574)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCCH-HHHHHHHHHHHHh
Confidence 345566777766555544444444333 11 2223333 2 345778888888876 3221 122333332 2
Q ss_pred cCchhHHHHhhcCCCcHHHHHHHhccC----CHHHHHHHHHHHHHhc----CCCCcHHHHHhcCChHHHHHHhcc---CC
Q 039015 491 ASIEEYRKLIGENPEAIPALVDMVRDG----TDRSKKNALVAIFGLL----MHSGNHWRFLAAGAVPLLLNLLTS---SD 559 (685)
Q Consensus 491 s~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs----~~~~n~~~iv~~G~v~~Lv~lL~~---~~ 559 (685)
...+. ...+..+..+++++ ....+..|+-++.+|. .+.+.+...+....++.|.+.|.. ..
T Consensus 387 ~~~Pt--------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 458 (574)
T smart00638 387 ARYPT--------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKG 458 (574)
T ss_pred hhcCC--------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcC
Confidence 22221 23566677777653 2445556666665554 333333233334466777776642 12
Q ss_pred ChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhh--cCCChhHHHHHHHHHHHHhccCcHHHHH
Q 039015 560 SEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILD--SCTSRAGKEYCVSLLLALCINGGANVVA 626 (685)
Q Consensus 560 ~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~--~~~s~~~~e~a~~~L~~L~~~~~~~~~~ 626 (685)
+..-+..++.+|.|+... . .++.+..++. ...+...+-.|+.+|..++...+..++.
T Consensus 459 ~~~~~~~~LkaLGN~g~~-~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~ 517 (574)
T smart00638 459 DEEEIQLYLKALGNAGHP-S---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQE 517 (574)
T ss_pred CchheeeHHHhhhccCCh-h---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHH
Confidence 333334456666665331 1 2344444443 1236678889999999888665454443
No 387
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=49.69 E-value=11 Score=43.45 Aligned_cols=46 Identities=26% Similarity=0.664 Sum_probs=34.0
Q ss_pred CCCccCcCccccCCCceec--cCcccccHHHHHHHHHcCCCCCCC-CCcc
Q 039015 278 PDDFTCPISLEIMKDPVTL--STGHTYDRASILKWFRAGNSTCPK-TGER 324 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~--~cghtfcr~ci~~~~~~~~~~CP~-c~~~ 324 (685)
...|.|.+|.--..---.+ .|||....+|...||..| ..||. |+..
T Consensus 1026 ~~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~g-d~CpsGCGC~ 1074 (1081)
T KOG0309|consen 1026 GFTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTG-DVCPSGCGCH 1074 (1081)
T ss_pred cceeeeeeEeeEeeccchhhccccccccHHHHHHHHhcC-CcCCCCCCcC
Confidence 3457788887665544444 699999999999999985 48986 5543
No 388
>PLN02195 cellulose synthase A
Probab=48.32 E-value=13 Score=44.68 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=35.2
Q ss_pred ccCcCccccCC-----Cceec--cCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 281 FTCPISLEIMK-----DPVTL--STGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 281 ~~CpIc~~~m~-----dPv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
-.|.||++-.- +|-+. .||.-.||.|.+-=-++|+..||.|+....
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 47999997433 55443 588889999996555678999999998765
No 389
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=48.07 E-value=68 Score=27.33 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=54.0
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcC-ChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHH
Q 039015 549 PLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHG-ALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVAL 627 (685)
Q Consensus 549 ~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g-~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~ 627 (685)
...+..| .++...++..++..|..|..... ..+.... .+..+...+++. .+-+--+|+..|..||...+..+...
T Consensus 6 ~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 6 QEALSDL-NDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHc-cCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHHHHHH
Confidence 3445666 67778899999999999988766 2222222 245555577776 78888999999999998766555444
Q ss_pred HH
Q 039015 628 LV 629 (685)
Q Consensus 628 l~ 629 (685)
+.
T Consensus 82 L~ 83 (92)
T PF10363_consen 82 LL 83 (92)
T ss_pred HH
Confidence 43
No 390
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=48.01 E-value=7.6 Score=39.96 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=27.9
Q ss_pred CccCcCccccCCC-ceeccCcccccHHHHHHHHHcCCCCCCCCCccc
Q 039015 280 DFTCPISLEIMKD-PVTLSTGHTYDRASILKWFRAGNSTCPKTGERL 325 (685)
Q Consensus 280 ~~~CpIc~~~m~d-Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l 325 (685)
--.|--|.....- --.++|.|.||..|-.. +. .+.||.|...+
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~-dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DS-DKICPLCDDRV 133 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc--Cc-cccCcCcccHH
Confidence 3456666543332 23569999999999532 22 67899997554
No 391
>PLN02436 cellulose synthase A
Probab=47.97 E-value=12 Score=45.37 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=35.7
Q ss_pred CccCcCccccCC-----Cceec--cCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 280 DFTCPISLEIMK-----DPVTL--STGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 280 ~~~CpIc~~~m~-----dPv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
.-.|.||++-.- +|-+. .||.-.||.|.+-=.++|+..||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 358999997643 34333 488889999997666788999999998765
No 392
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=47.65 E-value=53 Score=38.05 Aligned_cols=183 Identities=9% Similarity=0.059 Sum_probs=106.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSM 457 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~ 457 (685)
..++.|++++++.+..+|..-+..+-.... .-...+.+.-..|.+..-+.+.++.+++.++..+..|+.- ..+
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--- 403 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--- 403 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh---
Confidence 357777788887777777655544444432 3445667777788888777778888888888877666421 111
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 537 (685)
......++.+..+=. ....+.|.+..-.|...+.+...-. +..-.+-+..+-++++-...++.++.++.....+-+
T Consensus 404 ~Ln~Ellr~~ar~q~-d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~ 479 (690)
T KOG1243|consen 404 NLNGELLRYLARLQP-DEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD 479 (690)
T ss_pred hhcHHHHHHHHhhCc-cccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc
Confidence 111111222222212 2244566666666655554431111 211123444556677777889999999987776655
Q ss_pred cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH
Q 039015 538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATL 574 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L 574 (685)
... +...++|.++-+. -+.+..++..|..++...
T Consensus 480 ~~~--va~kIlp~l~pl~-vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 480 QSE--VANKILPSLVPLT-VDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhh--hhhhccccccccc-cCcccchhhHHHHHHHHH
Confidence 443 4445677777776 455666666666555543
No 393
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=47.48 E-value=11 Score=31.92 Aligned_cols=39 Identities=21% Similarity=0.489 Sum_probs=30.0
Q ss_pred CccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
.-.|-||..-...| |+.||..|-.+ ...|.+|+..+.+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki~dt 82 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKILDT 82 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc-----cCcccccCCeeccc
Confidence 45899998876655 88999999432 56899999988543
No 394
>PRK10869 recombination and repair protein; Provisional
Probab=47.10 E-value=5e+02 Score=29.91 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHhhHHhHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhccCcchhHhHHhh-h--HHHHHHHHHH
Q 039015 52 KRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKS-D--RVSNQLRLFI 128 (685)
Q Consensus 52 k~~~~~l~r~l~lL~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~-~--~i~~~f~~~~ 128 (685)
+++..+..+++..|.--++||...+. .+.--.-|++-+..|..+..+.+.+. ..|-++.+ + .+...+..+.
T Consensus 177 ~~~~~~~~~~~d~l~fql~Ei~~~~l--~~gE~eeL~~e~~~L~n~e~i~~~~~----~~~~~L~~~~~~~~~~~l~~~~ 250 (553)
T PRK10869 177 QQQSQERAARKQLLQYQLKELNEFAP--QPGEFEQIDEEYKRLANSGQLLTTSQ----NALQLLADGEEVNILSQLYSAK 250 (553)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCcccHHHHHHHHH
Confidence 34556777888888889999986653 34445667777777777888887777 44444444 2 4445555444
Q ss_pred HHHHHH
Q 039015 129 RAIGTA 134 (685)
Q Consensus 129 ~~l~~~ 134 (685)
+.+...
T Consensus 251 ~~l~~~ 256 (553)
T PRK10869 251 QLLSEL 256 (553)
T ss_pred HHHHHH
Confidence 444443
No 395
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=47.03 E-value=14 Score=24.94 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=7.9
Q ss_pred CCCCCCCCcc
Q 039015 315 NSTCPKTGER 324 (685)
Q Consensus 315 ~~~CP~c~~~ 324 (685)
...||.|+..
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 6689999764
No 396
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=46.59 E-value=2.4e+02 Score=32.80 Aligned_cols=131 Identities=19% Similarity=0.264 Sum_probs=69.8
Q ss_pred HHHHHhhcC----CCHHHHHHHHHHhhccccCc--c--------hhHHHHhcCcHHHHHHHhc----CCCCHHHHHHHHH
Q 039015 424 PSLLKLLSS----KDSSTQENAIAALLNLSKHC--K--------SKSMVVESGGLDFIVDMVK----KGLKVEARQHAAA 485 (685)
Q Consensus 424 p~Lv~lL~s----~~~~~~~~A~~aL~nLs~~~--~--------~k~~i~~~g~i~~Lv~lL~----~~~~~e~~~~Aa~ 485 (685)
..+..|+.+ .++.+...|+-++..|...- . .+........++.+...|. .+ +.+.+..++.
T Consensus 434 ~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~Lk 512 (618)
T PF01347_consen 434 KELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRG-DEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhcc-CHHHHHHHHH
Confidence 344445543 34566667776666664211 0 1122223445556666555 34 5677788888
Q ss_pred HHHHhcCchhHHHHhhcCCCcHHHHHHHhccC---CHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc-CCCh
Q 039015 486 TLFYIASIEEYRKLIGENPEAIPALVDMVRDG---TDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS-SDSE 561 (685)
Q Consensus 486 ~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-~~~~ 561 (685)
+|.|+-. ...++.|...+... +...+..|+.||..+....... +.+.|+.++.+ ..+.
T Consensus 513 aLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~ 574 (618)
T PF01347_consen 513 ALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDP 574 (618)
T ss_dssp HHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-H
T ss_pred HhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCCh
Confidence 8888733 34677888877665 4567778888887774333222 23456777643 2345
Q ss_pred hHHHHHHHHHHH
Q 039015 562 ELITDSLAVLAT 573 (685)
Q Consensus 562 ~~~~~al~~L~~ 573 (685)
+++..|..+|..
T Consensus 575 EvRiaA~~~lm~ 586 (618)
T PF01347_consen 575 EVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 666666544443
No 397
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=46.07 E-value=14 Score=44.95 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=35.6
Q ss_pred CccCcCccccCC-----Cceec--cCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 280 DFTCPISLEIMK-----DPVTL--STGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 280 ~~~CpIc~~~m~-----dPv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
.-.|.||++-.- +|-+. .||--.||.|.+-=.++|+..||.|+....
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 348999997643 34333 588889999996656688999999997664
No 398
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.99 E-value=1.7e+02 Score=30.85 Aligned_cols=140 Identities=13% Similarity=0.120 Sum_probs=86.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHH
Q 039015 464 LDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRF 542 (685)
Q Consensus 464 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 542 (685)
+...+..|.+. +++....+...+..|+..+ +...... ...|-.+++-+++....+-+.|+.++..+..+-.+...-
T Consensus 90 l~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L--~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 90 LKQALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPML--HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555 6777777777777777544 3222222 236778888888877778888888888876554443222
Q ss_pred HhcCChHHHHHHhc---cCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 039015 543 LAAGAVPLLLNLLT---SSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALC 617 (685)
Q Consensus 543 v~~G~v~~Lv~lL~---~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~ 617 (685)
....++..|. +.++.-+++.|..+|..+..+-.-.. .++.|+..+++. ++.++..++....+..
T Consensus 167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~------~L~~L~~~~~~~-n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK------LLRKLIPILQHS-NPRVRAKAALCFSRCV 233 (334)
T ss_pred ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH------HHHHHHHHHhhh-chhhhhhhhccccccc
Confidence 2333333332 23456788999999988877532111 256677777776 8888887776654443
No 399
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=45.78 E-value=2e+02 Score=29.84 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=51.3
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH--HHHHhcCChHHHHHHhc---c--------CCChhHHHHHHHHHH
Q 039015 506 AIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH--WRFLAAGAVPLLLNLLT---S--------SDSEELITDSLAVLA 572 (685)
Q Consensus 506 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~--~~iv~~G~v~~Lv~lL~---~--------~~~~~~~~~al~~L~ 572 (685)
++|+++.++.+.++..|..++.+|..+...-... ..+.+.|..+.+-+.|. . +....+...+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 7999999999999999999999999998654432 24667786665544442 1 234557777788887
Q ss_pred HHhc
Q 039015 573 TLAE 576 (685)
Q Consensus 573 ~La~ 576 (685)
.|+.
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 7754
No 400
>PRK12495 hypothetical protein; Provisional
Probab=45.75 E-value=26 Score=34.61 Aligned_cols=32 Identities=9% Similarity=0.009 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhhh
Q 039015 213 QEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKC 250 (685)
Q Consensus 213 ~E~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~ 250 (685)
.|.+.|++.. .+ ++.+....+.|-.||.++..
T Consensus 8 aEREkLREKy-----e~-d~~~R~~~~~ma~lL~~gat 39 (226)
T PRK12495 8 AEREKLREKY-----EQ-DEQKREATERMSELLLQGAT 39 (226)
T ss_pred HHHHHHHHHH-----hh-hHHHHHHHHHHHHHHHhhcc
Confidence 4444555443 22 34455567777777665433
No 401
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=45.73 E-value=8.8 Score=35.75 Aligned_cols=24 Identities=38% Similarity=0.995 Sum_probs=18.2
Q ss_pred cCcccccHHHHHHHHHc----------CCCCCCCCCccc
Q 039015 297 STGHTYDRASILKWFRA----------GNSTCPKTGERL 325 (685)
Q Consensus 297 ~cghtfcr~ci~~~~~~----------~~~~CP~c~~~l 325 (685)
.+||.|+ .||.+ |.-+||.|+..-
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~~ 42 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGSTE 42 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCCe
Confidence 4789987 48864 667999998753
No 402
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.57 E-value=11 Score=41.54 Aligned_cols=68 Identities=21% Similarity=0.321 Sum_probs=48.2
Q ss_pred CCCCCCccCcCc-cccCCCceec--cCcccccHHHHHHHHHcCCCCCCCCCcc-ccCCCCcccHHHHhhHHHHH
Q 039015 275 GLTPDDFTCPIS-LEIMKDPVTL--STGHTYDRASILKWFRAGNSTCPKTGER-LQSKELLVNLVLKRIIQDWS 344 (685)
Q Consensus 275 ~~~~~~~~CpIc-~~~m~dPv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~-l~~~~l~~n~~l~~~i~~~~ 344 (685)
+..+++.+|++| .+.|.+-..+ .|..+||..||...+.+ ..||.|... .....+.++..++..+..-.
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~~~~~~~~~~~p~~~r~~~n~~~ 285 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGASNVLADDLLPPKTLRDTINRIL 285 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchhhcccccccCCchhhHHHHHHHH
Confidence 478899999999 8999988877 69999999999887764 344444432 22235666666666655443
No 403
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=43.67 E-value=5.6e+02 Score=29.46 Aligned_cols=76 Identities=16% Similarity=0.078 Sum_probs=55.6
Q ss_pred cchhhHHHHHHHHHhhHHhHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhccCcchhHhHHhhh----HHHHHHH
Q 039015 50 TNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSD----RVSNQLR 125 (685)
Q Consensus 50 ~~k~~~~~l~r~l~lL~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~----~i~~~f~ 125 (685)
-.+++-++..+++.+|.-=++||...+. .+.-...|.+-+.-|..+..|.+.|. ..|-++.++ .+...+.
T Consensus 175 ~~~~~~~e~~~~~d~L~fq~~Ele~~~l--~~gE~e~L~~e~~rLsn~ekl~~~~~----~a~~~L~ge~~~~~~~~~l~ 248 (557)
T COG0497 175 DLQEKERERAQRADLLQFQLEELEELNL--QPGEDEELEEERKRLSNSEKLAEAIQ----NALELLSGEDDTVSALSLLG 248 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHhhHHHHHHHHH----HHHHHHhCCCCchhHHHHHH
Confidence 3466778999999999999999986553 33357778888888888999988888 667777654 3555554
Q ss_pred HHHHHH
Q 039015 126 LFIRAI 131 (685)
Q Consensus 126 ~~~~~l 131 (685)
.....+
T Consensus 249 ~a~~~l 254 (557)
T COG0497 249 RALEAL 254 (557)
T ss_pred HHHHHH
Confidence 444444
No 404
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=43.60 E-value=1.2e+02 Score=27.62 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=54.8
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCCh--HHHHHHHHHHHHHHHh
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSS--RASKKASALIRILHEF 663 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~--~~k~~A~~lL~~l~~~ 663 (685)
+..|-+=|+++ ++.++-.|+.+|-.+..+++......+.. .+++..|..++..... .+++++..++..-...
T Consensus 39 ~r~l~krl~~~-n~~v~l~AL~lLe~~vkNcg~~f~~ev~s-~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 39 VRLLKKRLNNK-NPHVALLALTLLDACVKNCGSKFHLEVAS-KEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHh-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 45566666677 99999999999999999988887777765 6788888888877533 3777777776665543
No 405
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.35 E-value=1.5e+02 Score=33.15 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=88.2
Q ss_pred CCcHHHHHHHh----ccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015 504 PEAIPALVDMV----RDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD 579 (685)
Q Consensus 504 ~g~i~~Lv~lL----~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~ 579 (685)
.|....++..+ .+++...+..|+..|.|++.....+.+--..-.+..++.=|..+.+.++.-+++.+|..+...-.
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 45555555444 34556677789999999987744332222222444555555455568888888888888766433
Q ss_pred cHHHHHhcCChHHH---HHHhhcCCChhHHHHHHHHHHHH---hccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHH
Q 039015 580 GTIAILHHGALDMI---MKILDSCTSRAGKEYCVSLLLAL---CINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKA 653 (685)
Q Consensus 580 ~~~~i~~~g~v~~L---v~lL~~~~s~~~~e~a~~~L~~L---~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A 653 (685)
+..- ..+-++.- ..+..+. .+..+-+|..+...| |.++.+........ +-..+|+-.+.+.++..-+.+
T Consensus 333 ~~~l--~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~--k~~~~lllhl~d~~p~va~AC 407 (533)
T KOG2032|consen 333 NDDL--ESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVK--KRLAPLLLHLQDPNPYVARAC 407 (533)
T ss_pred hcch--hhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHH--hccccceeeeCCCChHHHHHH
Confidence 3322 22223333 3356665 777777666555554 44443333222222 224466667788888777777
Q ss_pred HHHHHHH
Q 039015 654 SALIRIL 660 (685)
Q Consensus 654 ~~lL~~l 660 (685)
...++.+
T Consensus 408 r~~~~~c 414 (533)
T KOG2032|consen 408 RSELRTC 414 (533)
T ss_pred HHHHHhc
Confidence 7777665
No 406
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=42.76 E-value=26 Score=30.82 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhH
Q 039015 522 KKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEEL 563 (685)
Q Consensus 522 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~ 563 (685)
.-.++..|..|+.+++--..+++.|+++.|+.|| ++++.++
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL-~HeN~DI 103 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLL-SHENTDI 103 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHH-CCCCcce
Confidence 3467788889999999999999999999999999 6666554
No 407
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=42.65 E-value=18 Score=42.53 Aligned_cols=47 Identities=30% Similarity=0.490 Sum_probs=36.7
Q ss_pred CCccCcCccccCC--Cceec--cCcccccHHHHHHHHHc------CCCCCCCCCccc
Q 039015 279 DDFTCPISLEIMK--DPVTL--STGHTYDRASILKWFRA------GNSTCPKTGERL 325 (685)
Q Consensus 279 ~~~~CpIc~~~m~--dPv~~--~cghtfcr~ci~~~~~~------~~~~CP~c~~~l 325 (685)
..+.|-||.+.+. +||-. .|-|.|...||.+|-.. ....||.|+...
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 3589999999987 56543 58899999999999864 245799998443
No 408
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=41.94 E-value=3.1e+02 Score=26.61 Aligned_cols=117 Identities=16% Similarity=0.109 Sum_probs=72.9
Q ss_pred hcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHh-cC----C-h--------------HHHHHHhhcCCCh
Q 039015 544 AAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILH-HG----A-L--------------DMIMKILDSCTSR 603 (685)
Q Consensus 544 ~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~-~g----~-v--------------~~Lv~lL~~~~s~ 603 (685)
..+.-+.|+..+..|++..++..|+.+|..|-.....--...+ .. . . ..|+..|...+++
T Consensus 37 ~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~ 116 (182)
T PF13251_consen 37 GRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSP 116 (182)
T ss_pred CCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3446677888776888999999999999988664321111111 11 1 1 3344444444466
Q ss_pred hHHHHHHHHHHHHhccCcHH-HHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015 604 AGKEYCVSLLLALCINGGAN-VVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE 662 (685)
Q Consensus 604 ~~~e~a~~~L~~L~~~~~~~-~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 662 (685)
...-..+.+|..|..+.+-+ ....+. ..++..+..++.+.+...+-.+...+..+-.
T Consensus 117 ~~l~q~lK~la~Lv~~tPY~rL~~~ll--~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 117 PVLTQLLKCLAVLVQATPYHRLPPGLL--TEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHHHccCChhhcCHhHH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 77778888888888877633 222222 2345566677777777777777777776654
No 409
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.16 E-value=68 Score=36.31 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=50.2
Q ss_pred cCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHH
Q 039015 545 AGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANV 624 (685)
Q Consensus 545 ~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~ 624 (685)
.|+|..|+..--++.+++++..|+.+|.-+|-.+ ...++..+++|..+.++.++--.+-+|.--|.+.+.++
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 3567778887447888999999999988776642 23466677766554477777776677776777665543
No 410
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=41.08 E-value=25 Score=30.83 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=20.8
Q ss_pred cccccHHHHHHHHHc--------CCCCCCCCCcc
Q 039015 299 GHTYDRASILKWFRA--------GNSTCPKTGER 324 (685)
Q Consensus 299 ghtfcr~ci~~~~~~--------~~~~CP~c~~~ 324 (685)
.-.||..|+..++.+ +...||.|+..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 567999999988864 46689999774
No 411
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=40.99 E-value=1.7e+02 Score=34.13 Aligned_cols=107 Identities=19% Similarity=0.113 Sum_probs=70.5
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcC--ChHHHHHHhh----cCCChhHHHHHHHHHHHHhccCc
Q 039015 548 VPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHG--ALDMIMKILD----SCTSRAGKEYCVSLLLALCINGG 621 (685)
Q Consensus 548 v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g--~v~~Lv~lL~----~~~s~~~~e~a~~~L~~L~~~~~ 621 (685)
...++.+| .+.+-.++...+.+.+|+..+-....+++++- .+..|++++. +. +|-++..|+.++..+|..+.
T Consensus 301 ~~~~~~LL-dses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~-~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELL-DSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT-YPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHh-cccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHhCcc
Confidence 45678888 55666777778888888877544333443322 1555555433 44 89999999999999997653
Q ss_pred HHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015 622 ANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660 (685)
Q Consensus 622 ~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l 660 (685)
.-.... ..++.....-+++.+..++++|-.++.-|
T Consensus 379 k~~~~r----~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 379 KTVGRR----HEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred cccchH----HHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 211111 12344667788899999999998877543
No 412
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=40.97 E-value=4.2e+02 Score=29.33 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCcchhHhHHhhhHHHHHHHHHHHHHHHHhhccCCccccCcHHHHH
Q 039015 81 GSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKE 151 (685)
Q Consensus 81 ~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~~i~~~f~~~~~~l~~~L~~lP~~~~~~s~~v~e 151 (685)
|.....|..|..-|+.++.++..-. |.+....+...|-.||+..++-..|+.|
T Consensus 195 P~i~~~l~~L~~~Lk~gyk~~t~gK------------------F~eA~~~Fr~iL~~i~l~vv~~~~E~~e 247 (422)
T PF06957_consen 195 PAIPLSLSSLEERLKEGYKLFTAGK------------------FEEAIEIFRSILHSIPLLVVESREEEDE 247 (422)
T ss_dssp BB----HHHHHHHHHHHHHHHHTT-------------------HHHHHHHHHHHHHHHHC--BSSCHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHHHhcCC------------------HHHHHHHHHHHHHHhheeeecCHHHHHH
Confidence 4456788999999999988876544 6666777777777788776665555444
No 413
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=40.97 E-value=20 Score=33.93 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=23.0
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
+..|.||.|..-+. |. .-+.. .|+||.|+..+...
T Consensus 107 ~~~Y~Cp~c~~r~t----------f~-----eA~~~-~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 107 NMFFICPNMCVRFT----------FN-----EAMEL-NFTCPRCGAMLDYL 141 (158)
T ss_pred CCeEECCCCCcEee----------HH-----HHHHc-CCcCCCCCCEeeec
Confidence 56789998873322 22 22233 79999999998653
No 414
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.78 E-value=5.1e+02 Score=31.65 Aligned_cols=195 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCHHHHHHhhc------C--CCHHHHHHHHHHhhccc---cCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039015 421 GCIPSLLKLLS------S--KDSSTQENAIAALLNLS---KHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFY 489 (685)
Q Consensus 421 G~ip~Lv~lL~------s--~~~~~~~~A~~aL~nLs---~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~ 489 (685)
|.++.++++|. . .++.-.+.|+.++.+|+ .-..--+.+++.=.+..+...+++. ..-.|..|++++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~-~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSP-YGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCc-hhHHHHHHHHHHHH
Q ss_pred hcCch-hHHHHhhcCCCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhc-----------
Q 039015 490 IASIE-EYRKLIGENPEAIPALVDMVR-DGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT----------- 556 (685)
Q Consensus 490 Ls~~~-~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~----------- 556 (685)
.+..+ .......+ ++......|. +..-.++..|+-||..+-.+.+....-+.+.+.+.+-++|.
T Consensus 489 ~~~~df~d~~~l~~---ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt 565 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLSE---ALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT 565 (1010)
T ss_pred HHhccCCChHHHHH---HHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH
Q ss_pred --------------cCCChhHHHHHHHHHHHHhcC------hhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHHHHHHH
Q 039015 557 --------------SSDSEELITDSLAVLATLAEK------LDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCVSLLLA 615 (685)
Q Consensus 557 --------------~~~~~~~~~~al~~L~~La~~------~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L~~ 615 (685)
+.=-.+++..-+.+...++.. ...-.++...|.+..+-. ++...+.|.+..+--..+..
T Consensus 566 ~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~ 645 (1010)
T KOG1991|consen 566 NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q ss_pred Hhcc
Q 039015 616 LCIN 619 (685)
Q Consensus 616 L~~~ 619 (685)
+...
T Consensus 646 vi~~ 649 (1010)
T KOG1991|consen 646 VIGF 649 (1010)
T ss_pred HHHH
No 415
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=40.71 E-value=18 Score=43.81 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=36.0
Q ss_pred CccCcCccccCC-----Cceec--cCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 280 DFTCPISLEIMK-----DPVTL--STGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 280 ~~~CpIc~~~m~-----dPv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
.-.|.||++-.- +|-+. .||.-.||.|.+-=.++|+..||.|+....
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 467999997643 44433 588889999996666788999999998765
No 416
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=40.53 E-value=2.1e+02 Score=33.21 Aligned_cols=197 Identities=18% Similarity=0.233 Sum_probs=97.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH-------hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-
Q 039015 423 IPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV-------ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE- 494 (685)
Q Consensus 423 ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~-------~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~- 494 (685)
+-.|+.+|..-+.+-......-+..-+.....+..+. ...++..+.+.+.++ ... -..|+.+|..|....
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~-~~~-~~ea~~~l~~l~~~~~ 426 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSK-KLT-DDEAAQLLASLPFHVR 426 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT--S--HHHHHHHHHHHHHT--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCC-HHHHHHHHHHHHhhcC
Confidence 5566777766555444444333333221122344333 345788888888876 222 233556666654432
Q ss_pred hHHHHhhcCCCcHHHHHHHhcc----CCHHHHHHHHHHHHHhc----CCC------CcHHHHHhcCChHHHHHHhc---c
Q 039015 495 EYRKLIGENPEAIPALVDMVRD----GTDRSKKNALVAIFGLL----MHS------GNHWRFLAAGAVPLLLNLLT---S 557 (685)
Q Consensus 495 ~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs----~~~------~n~~~iv~~G~v~~Lv~lL~---~ 557 (685)
..-. ..+..+..+++. .++..+..|+-++..|. ... ..+...+....++.|...|. +
T Consensus 427 ~Pt~------e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 500 (618)
T PF01347_consen 427 RPTE------ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVS 500 (618)
T ss_dssp ---H------HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHH
T ss_pred CCCH------HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhh
Confidence 2221 234455556543 34556666666666664 331 12222344456777887775 2
Q ss_pred CCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcC--CChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcH
Q 039015 558 SDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSC--TSRAGKEYCVSLLLALCINGGANVVALLVKSPSLM 635 (685)
Q Consensus 558 ~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~--~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i 635 (685)
..+..-+..++.+|.|+.. +. .++.|..++... .+...+-.|+.+|..+....+..++
T Consensus 501 ~~~~~~~~~~LkaLgN~g~-~~---------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~---------- 560 (618)
T PF01347_consen 501 RGDEEEKIVYLKALGNLGH-PE---------SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVR---------- 560 (618)
T ss_dssp TT-HHHHHHHHHHHHHHT--GG---------GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHH----------
T ss_pred ccCHHHHHHHHHHhhccCC-ch---------hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHH----------
Confidence 3455666778888888843 11 345555544432 2566677777777777655433332
Q ss_pred HHHHHHHhcCCh
Q 039015 636 GSLYSLLSQGSS 647 (685)
Q Consensus 636 ~~L~~Ll~~g~~ 647 (685)
+.|+.+..+.+.
T Consensus 561 ~~l~~I~~n~~e 572 (618)
T PF01347_consen 561 EILLPIFMNTTE 572 (618)
T ss_dssp HHHHHHHH-TTS
T ss_pred HHHHHHhcCCCC
Confidence 245556666543
No 417
>KOG1908 consensus Ribonuclease inhibitor type leucine-rich repeat proteins [RNA processing and modification]
Probab=40.52 E-value=45 Score=30.00 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=47.3
Q ss_pred CcCCCCcccCCC---CCChhHHHHHHH-----HHHHHHhcccCCccccchhhHHHHHHHHHhhHHhH-------HHHhhc
Q 039015 11 RVLTFPAVHPCE---SISPSTLLISLI-----DLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFL-------EELRVE 75 (685)
Q Consensus 11 ~~~~~~~~~~~~---~~~~~~l~~~l~-----~l~~~i~~~~~~~~~~~k~~~~~l~r~l~lL~~ll-------eel~~~ 75 (685)
|..||||-+--. -..++.|..+-. --+.+|..+.+. . +||+||+..+...+-|.-|- +-|.-.
T Consensus 43 k~VsFPaD~DiisG~hEa~~~lfHa~hdsqrvids~Eii~AYke-A-CQk~nCap~aalekQig~Fh~~~d~R~d~L~LK 120 (165)
T KOG1908|consen 43 KRVSFPADEDIISGAHEAKDPLFHAQHDSQRVIDSDEIIGAYKE-A-CQKLNCAPIAALEKQIGEFHDLGDHRLDCLDLK 120 (165)
T ss_pred ccccCCcchhhhccccCCCchhhhhhccccccccHHHHHHHHHH-H-HHHccccchHHHHHHHHHHhcCcchhHHHHhcc
Confidence 778999854211 112233433322 234566555555 2 89999998877666665442 222222
Q ss_pred cCCCChhHHHHHHHHHHHHH
Q 039015 76 SADIPGSLVISLSELHLTFQ 95 (685)
Q Consensus 76 ~~~~~~~~~~~l~~L~~~l~ 95 (685)
...++-....+|+++..-||
T Consensus 121 GEkl~haq~EALEEiFKRlQ 140 (165)
T KOG1908|consen 121 GEKLDHAQCEALEEIFKRLQ 140 (165)
T ss_pred cccccHHHHHHHHHHHHHhh
Confidence 34466677888877776665
No 418
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=40.51 E-value=23 Score=30.96 Aligned_cols=51 Identities=25% Similarity=0.537 Sum_probs=30.7
Q ss_pred CCCCccCcCccccCCCceecc-Cc-----ccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 277 TPDDFTCPISLEIMKDPVTLS-TG-----HTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~dPv~~~-cg-----htfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
+++.++|||++..-.+-|.+. .+ +-|+...+.+....| ..=|.+|.+++..
T Consensus 37 ~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~-~~HPLSREpit~s 93 (113)
T PF06416_consen 37 PEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG-APHPLSREPITPS 93 (113)
T ss_dssp -CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TT
T ss_pred CHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC-CCCCCccCCCChh
Confidence 466799999999999999882 22 248999999998873 4458888877654
No 419
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=40.28 E-value=2.6e+02 Score=24.69 Aligned_cols=90 Identities=29% Similarity=0.398 Sum_probs=59.5
Q ss_pred ChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH-HhhcCCChhHH-HHHHHHHHHHhccC----
Q 039015 547 AVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK-ILDSCTSRAGK-EYCVSLLLALCING---- 620 (685)
Q Consensus 547 ~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~-e~a~~~L~~L~~~~---- 620 (685)
.+|.+...|......+.+..+..++..|+..-.-... .+..+++ +++.. .+... ..++.+|..++..-
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~-----~l~~l~~~i~~~~-~~~~~~~~~l~~L~~l~q~q~~~~ 80 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE-----VLNALMESILKNW-TQETVQRQALICLIVLCQSQENVD 80 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH-----HHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHcccccc
Confidence 3677777785466789999999999999875332222 2445666 55554 44444 78888898888654
Q ss_pred --cHHHHHHHHhcCCcHHHHHHHH
Q 039015 621 --GANVVALLVKSPSLMGSLYSLL 642 (685)
Q Consensus 621 --~~~~~~~l~~~~g~i~~L~~Ll 642 (685)
+..+.+.+.+-.++...|.++.
T Consensus 81 ~lp~~~~~~l~~~~~l~~~L~~l~ 104 (121)
T PF12397_consen 81 SLPRKVFKALLKLPDLIELLSELS 104 (121)
T ss_pred cCCHHHHHHHHcCccHHHHHHHHH
Confidence 2346666666566666777663
No 420
>PRK04023 DNA polymerase II large subunit; Validated
Probab=40.13 E-value=23 Score=42.58 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=37.1
Q ss_pred CCccCcCccccCCCceeccCcc-----cccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHh
Q 039015 279 DDFTCPISLEIMKDPVTLSTGH-----TYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVD 346 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~~cgh-----tfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~ 346 (685)
....||-|+........-.||. .||..| .+.. +...||.|+....... .....++.+...-.+.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~-~~y~CPKCG~El~~~s-~~~i~l~~~~~~A~~~ 693 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEV-EEDECEKCGREPTPYS-KRKIDLKELYDRALEN 693 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcC-CCCcCCCCCCCCCccc-eEEecHHHHHHHHHHH
Confidence 4468888888753322224874 489999 2222 2467999999876432 2233344444443333
No 421
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=40.07 E-value=35 Score=32.79 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=33.4
Q ss_pred CCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCC-cccHHHHhhHHHHHHh
Q 039015 277 TPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKEL-LVNLVLKRIIQDWSVD 346 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l-~~n~~l~~~i~~~~~~ 346 (685)
.+..|.||.|.-.+ +|+..+ .. .++||.|+..+...+. .....+...+...-..
T Consensus 110 ~~~~y~C~~~~~r~----------sfdeA~-----~~-~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~ 164 (176)
T COG1675 110 ENNYYVCPNCHVKY----------SFDEAM-----EL-GFTCPKCGEDLEEYDSSEEIEELESELDELEEE 164 (176)
T ss_pred cCCceeCCCCCCcc----------cHHHHH-----Hh-CCCCCCCCchhhhccchHHHHHHHHHHHHHHHH
Confidence 34569998876544 244433 43 5999999999875543 3344555556555443
No 422
>PF15616 TerY-C: TerY-C metal binding domain
Probab=39.82 E-value=12 Score=34.11 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=31.9
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
.+...=.||-|....--.+- .||+.+|-. ..+..+||.|++...
T Consensus 73 eL~g~PgCP~CGn~~~fa~C-~CGkl~Ci~------g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 73 ELIGAPGCPHCGNQYAFAVC-GCGKLFCID------GEGEVTCPWCGNEGS 116 (131)
T ss_pred HhcCCCCCCCCcChhcEEEe-cCCCEEEeC------CCCCEECCCCCCeee
Confidence 44555789999987664433 799999842 234779999998764
No 423
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.54 E-value=29 Score=36.79 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=52.7
Q ss_pred HHHHHHHHhhcCCchhhHHHhhCCHHHHHH--hhcCCCHHHHHHHHHHhhccccCc-chhHHHH
Q 039015 399 VAYEVRLLTKSSIFNRSCLVEVGCIPSLLK--LLSSKDSSTQENAIAALLNLSKHC-KSKSMVV 459 (685)
Q Consensus 399 a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~--lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~ 459 (685)
..+-|..|+..+++++..+.+.||++.+++ -.++.||-+++..+-++.+|..++ +|++.|.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 556788899989999999999999999987 445688999999999999999877 7788776
No 424
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=38.99 E-value=2e+02 Score=25.69 Aligned_cols=96 Identities=21% Similarity=0.234 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHh--hcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHH
Q 039015 562 ELITDSLAVLATLAEKLDGTIAILHHGALDMIMKIL--DSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLY 639 (685)
Q Consensus 562 ~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL--~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~ 639 (685)
+.....+.-++.++.+......|+ ..|.+-| ..+.+....-.|+.+|..|+.++++.+...+......+..|.
T Consensus 18 gp~~~~l~eIa~~t~~~~~~~~I~-----~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~ 92 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYNSKDCQEIM-----DVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQ 92 (125)
T ss_dssp S--HHHHHHHHHHTTSCHHHHHHH-----HHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGG
T ss_pred CcCHHHHHHHHHHHhccccHHHHH-----HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcc
Confidence 444555666677766655555454 3455544 233377788899999999999999988888876434444444
Q ss_pred HHHh---cCCh---HHHHHHHHHHHHHHH
Q 039015 640 SLLS---QGSS---RASKKASALIRILHE 662 (685)
Q Consensus 640 ~Ll~---~g~~---~~k~~A~~lL~~l~~ 662 (685)
.+-. .|.+ .++++|..++.+|..
T Consensus 93 ~f~~~d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 93 DFQYVDPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp G---BBTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred eeeccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 4422 1333 388999999998864
No 425
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=38.91 E-value=1.8e+02 Score=26.64 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCCCh---HHHHHHHHHHHHHH
Q 039015 194 SEVKRVLDYLGITKW---SQCNQEVKFLDSEI 222 (685)
Q Consensus 194 ~~l~~~~~~l~l~~~---~~~~~E~~~l~~~~ 222 (685)
+.+..++++|||+|. .+|...+..|..++
T Consensus 94 ~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v 125 (132)
T PF05597_consen 94 ERVARALNRLGVPSRKDVEALSARIDQLTAQV 125 (132)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 456788999999994 44455555555555
No 426
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=37.93 E-value=1.6e+02 Score=28.57 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccc
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLS 449 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs 449 (685)
+..++.+++..-+.+...+..|+..|....+.+--|-. -.+|.|+.+..++++.++..|...+..+.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 44566677777788999999999999888765433322 36899999999999999999999998885
No 427
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=37.16 E-value=17 Score=33.94 Aligned_cols=38 Identities=24% Similarity=0.452 Sum_probs=22.6
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHH-HcCCCCCCCCCccccC
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWF-RAGNSTCPKTGERLQS 327 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~-~~~~~~CP~c~~~l~~ 327 (685)
...|.||-|...+. -.=..... ..|.+.||.|+..+..
T Consensus 97 ~~~Y~Cp~C~~~y~------------~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPNCQSKYT------------FLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcCCCCEee------------HHHHHHhcCCCCcEECCCCCCEEEE
Confidence 45799997764443 11111111 1346899999999854
No 428
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=36.88 E-value=24 Score=41.16 Aligned_cols=49 Identities=20% Similarity=0.486 Sum_probs=37.1
Q ss_pred CCCccCcCcc--ccCCCceeccCccc-----ccHHHHHHHHHc-CCCCCCCCCcccc
Q 039015 278 PDDFTCPISL--EIMKDPVTLSTGHT-----YDRASILKWFRA-GNSTCPKTGERLQ 326 (685)
Q Consensus 278 ~~~~~CpIc~--~~m~dPv~~~cght-----fcr~ci~~~~~~-~~~~CP~c~~~l~ 326 (685)
.++-.|-||. ..-.||..-||..+ ..++|+.+|..- +..+|-.|..+..
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 4557899987 44557877777654 578999999984 5778999997764
No 429
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=36.75 E-value=25 Score=43.04 Aligned_cols=46 Identities=26% Similarity=0.530 Sum_probs=31.0
Q ss_pred CCCCCccCcCcc--ccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC-CCccc
Q 039015 276 LTPDDFTCPISL--EIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK-ELLVN 333 (685)
Q Consensus 276 ~~~~~~~CpIc~--~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~-~l~~n 333 (685)
+++.++.||-|. +...|+- -|..|+. ....||.|+.++..+ .-+|-
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~s---vgsGfDL---------pdK~CPkCg~pl~kDG~dIPF 958 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDGS---VGSGFDL---------PDKDCPKCGTPLKKDGHDIPF 958 (1444)
T ss_pred CCCccccCCCCceeeeecCCC---cCCCCCC---------CCCCCCcCCCccccCCCCCCh
Confidence 779999999997 5555553 2333443 477999999998644 33443
No 430
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.71 E-value=18 Score=30.23 Aligned_cols=13 Identities=23% Similarity=0.790 Sum_probs=11.8
Q ss_pred cccHHHHHHHHHc
Q 039015 301 TYDRASILKWFRA 313 (685)
Q Consensus 301 tfcr~ci~~~~~~ 313 (685)
.|||.|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999985
No 431
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=35.67 E-value=20 Score=37.04 Aligned_cols=25 Identities=16% Similarity=0.541 Sum_probs=17.6
Q ss_pred CccCcCccccCC--C-ceeccCcccccH
Q 039015 280 DFTCPISLEIMK--D-PVTLSTGHTYDR 304 (685)
Q Consensus 280 ~~~CpIc~~~m~--d-Pv~~~cghtfcr 304 (685)
.|.||+|...|. + ...-+.||+|+.
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~ 29 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDC 29 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcc
Confidence 389999999885 2 233356888865
No 432
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=35.32 E-value=2e+02 Score=31.13 Aligned_cols=92 Identities=17% Similarity=0.227 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc-CCHHHHHHH-HHHHHHhcCCCCcHHH
Q 039015 464 LDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRD-GTDRSKKNA-LVAIFGLLMHSGNHWR 541 (685)
Q Consensus 464 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A-~~aL~nLs~~~~n~~~ 541 (685)
+.-++.=|..+.+..+|..++--|..-+.+++++..+.. .|.+..+++.+.. ++......+ +.+++-|+.+..+-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra-~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRA-HGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 444555555444678899999999998999999999998 9999999999954 334344434 4445555555555554
Q ss_pred HHhcCChHHHHHHhc
Q 039015 542 FLAAGAVPLLLNLLT 556 (685)
Q Consensus 542 iv~~G~v~~Lv~lL~ 556 (685)
+.+.+....++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 455566666666664
No 433
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=35.02 E-value=4e+02 Score=25.85 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=50.2
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCh
Q 039015 505 EAIPALVDMVRDGTDRSKKNALVAIFGLLMH-SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL 578 (685)
Q Consensus 505 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~ 578 (685)
-.+|.+++=|+.....-+..|...+..|... ...+..=+=-..|.+|-..| +..++++...++.+|..|+...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL-~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRAL-NTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhh
Confidence 4667777777776666677777777777655 23332223344566677777 5678999999999999996643
No 434
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=34.67 E-value=6.5 Score=41.23 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=22.7
Q ss_pred CCCccCcCccccCCCceeccC---c--ccccHHHHHHHHHcCCCCCCCCCccc
Q 039015 278 PDDFTCPISLEIMKDPVTLST---G--HTYDRASILKWFRAGNSTCPKTGERL 325 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~c---g--htfcr~ci~~~~~~~~~~CP~c~~~l 325 (685)
...-.||+|+..-.--++..- | +-+|..|=..|--. ...||.|+..-
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNTD 221 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---S
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCCC
Confidence 345799999987665555543 4 45799998888554 66899998753
No 435
>PLN02400 cellulose synthase
Probab=34.37 E-value=19 Score=43.80 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=35.3
Q ss_pred CccCcCccccCC-----Cceec--cCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 280 DFTCPISLEIMK-----DPVTL--STGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 280 ~~~CpIc~~~m~-----dPv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
.-.|.||++-.- +|-+. .||--.||.|.+-=.++|+..||.|+....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 358999997644 34333 588889999996555678999999998765
No 436
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.36 E-value=29 Score=36.90 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=35.0
Q ss_pred ccCcCccccCCC---ceeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 281 FTCPISLEIMKD---PVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 281 ~~CpIc~~~m~d---Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
+.|.|+++.|.| |++.|-|++|-...|.+|-...+-.||.++..+..
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~ 380 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRY 380 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccH
Confidence 567777777764 77888999999888888866534788888776653
No 437
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=34.30 E-value=6.7e+02 Score=27.63 Aligned_cols=174 Identities=19% Similarity=0.176 Sum_probs=95.7
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCC
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTD-RSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~~~ 537 (685)
+++|--..|.++|+.- + ..+|+..-|..+.. +.+..++. .++..|.+|-+ ..+...+.++.-|+.+..
T Consensus 10 v~age~~~I~e~l~~~-n---~k~aa~~kFd~a~~-d~r~eL~e------~i~~Vle~~~p~t~~v~~LetvrILSRdk~ 78 (532)
T KOG4464|consen 10 VEAGEADKIEEFLRKY-N---FKHAAVFKFDSANS-DDRKELGE------RIFEVLENGEPLTHRVVCLETVRILSRDKD 78 (532)
T ss_pred HhcCCchhHHHHHHHh-h---hhhhhhhcccccch-hhHHHHHH------HHHHHHhcCCCchhhhhHHHHHHHHhcccc
Confidence 3444445555555432 1 23444444444433 44766654 56777777663 445567788888876655
Q ss_pred cHHHHHhcCChHHHHHHhc---------cCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcC----CCh
Q 039015 538 NHWRFLAAGAVPLLLNLLT---------SSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSC----TSR 603 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~---------~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~----~s~ 603 (685)
.-.-+....-+..|+.+-. ...+..+..+++.+|.|+..+ +..+....+..-+..+.+.+... -..
T Consensus 79 ~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~ 158 (532)
T KOG4464|consen 79 GLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPK 158 (532)
T ss_pred ccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc
Confidence 3222222222333333321 123467889999999999886 55666667766565565533321 011
Q ss_pred hHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhc
Q 039015 604 AGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQ 644 (685)
Q Consensus 604 ~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~ 644 (685)
..+-.=+..|.-|..-.. ..+..+..+.++.+.+-.++.+
T Consensus 159 ~~~~~dlrLLflltale~-~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 159 DSSIFDLRLLFLLTALET-DHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred cchhhHHHHHHHHHHhhH-HHHHHHHHHhcccHHHHHHhhc
Confidence 222334445544554432 4455555557888888888865
No 438
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.22 E-value=21 Score=35.44 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=27.9
Q ss_pred CcCccccCCCceeccCcc-cccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 283 CPISLEIMKDPVTLSTGH-TYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 283 CpIc~~~m~dPv~~~cgh-tfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
|-.|.+-=..=+.+||.| .+|..| ..+-.+||+|+....
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C-----~~~~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGIC-----DESLRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEecccc-----cccCccCCCCcChhh
Confidence 888887766655669997 578777 223567999976543
No 439
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=33.87 E-value=2.6e+02 Score=25.80 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=52.7
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHH-HHHHHhc---CChHHHHHHHHHHHHHHHh
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGS-LYSLLSQ---GSSRASKKASALIRILHEF 663 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~-L~~Ll~~---g~~~~k~~A~~lL~~l~~~ 663 (685)
+..|.+=|..+.++.+...|+.+|-.+..++|......+.. -+++.- |+.++.. ....++.++..+++..+..
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eias-k~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAK-KDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHH-HHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 45565534433378888999999999999999888888776 567775 8888863 2346788777777766554
No 440
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=33.21 E-value=1.1e+02 Score=35.47 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=76.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHh------cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhH
Q 039015 423 IPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVE------SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEY 496 (685)
Q Consensus 423 ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~------~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~ 496 (685)
...++.+|+++.-..+..-+.+..|+..+-.-...+++ +..+..+++-|... ++=+|..|..++..+..-+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~-~py~RtKalqv~~kifdl~s- 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT-YPYTRTKALQVLEKIFDLNS- 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHhCcc-
Confidence 34567788888888888888888888766544444543 34566666666666 88889988888876654331
Q ss_pred HHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015 497 RKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 497 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 537 (685)
...+....++...++.|++.+.-++++|+..+..|...++
T Consensus 379 -k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 379 -KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred -cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 1112223456677788888888899999999888865443
No 441
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=32.94 E-value=58 Score=25.35 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=11.1
Q ss_pred CCCCCCCCCccccCC
Q 039015 314 GNSTCPKTGERLQSK 328 (685)
Q Consensus 314 ~~~~CP~c~~~l~~~ 328 (685)
.|.+||.|+.+++.+
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 377888888887653
No 442
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=32.74 E-value=23 Score=41.00 Aligned_cols=52 Identities=27% Similarity=0.393 Sum_probs=38.9
Q ss_pred CCCCCCccCcCccccCCCce----------eccCcccc--------------------cHHHHHHHHHc-------CCCC
Q 039015 275 GLTPDDFTCPISLEIMKDPV----------TLSTGHTY--------------------DRASILKWFRA-------GNST 317 (685)
Q Consensus 275 ~~~~~~~~CpIc~~~m~dPv----------~~~cghtf--------------------cr~ci~~~~~~-------~~~~ 317 (685)
..+|+--.|+-|++-|.||- .+.||..| |..|-.+|-+- +...
T Consensus 96 ~I~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~a 175 (750)
T COG0068 96 QIPPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIA 175 (750)
T ss_pred ccCCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCcccccccccccc
Confidence 35788899999999999983 23577765 88888776542 3557
Q ss_pred CCCCCcccc
Q 039015 318 CPKTGERLQ 326 (685)
Q Consensus 318 CP~c~~~l~ 326 (685)
||.|+-.+.
T Consensus 176 Cp~CGP~~~ 184 (750)
T COG0068 176 CPKCGPHLF 184 (750)
T ss_pred CcccCCCeE
Confidence 999997654
No 443
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=32.63 E-value=3.3e+02 Score=31.31 Aligned_cols=139 Identities=12% Similarity=0.044 Sum_probs=90.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHh--cCc
Q 039015 386 DRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVE--SGG 463 (685)
Q Consensus 386 ~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~--~g~ 463 (685)
....+-++-.|..+...|+.-...-| ..+..-.++...--.|++.+..++.....+|..|+..+.+...|.. ...
T Consensus 282 sRy~Dv~d~IRv~c~~~L~dwi~lvP---~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRF 358 (740)
T COG5537 282 SRYIDVDDVIRVLCSMSLRDWIGLVP---DYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERF 358 (740)
T ss_pred hhccchhHHHHHHHHHHHHHHHhcch---HHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 33444455566666666665554222 3344444555555577778889999999999999998888775542 456
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 464 LDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 464 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
-..|++++..+.+. +|..+..++..|.. ...-....|.....++-++.++.++.-..++.++|.
T Consensus 359 k~rILE~~r~D~d~-VRi~sik~l~~lr~------lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 359 KDRILEFLRTDSDC-VRICSIKSLCYLRI------LGVLSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHHHhhccch-hhHHHHHHHHHHHH------hcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 77888899888444 88888888877743 222213345555555667777766666667777764
No 444
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=32.25 E-value=13 Score=39.22 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=31.8
Q ss_pred CCCccCcCccccCCCceecc----Cc--ccccHHHHHHHHHcCCCCCCCCCcc
Q 039015 278 PDDFTCPISLEIMKDPVTLS----TG--HTYDRASILKWFRAGNSTCPKTGER 324 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~----cg--htfcr~ci~~~~~~~~~~CP~c~~~ 324 (685)
...-.||+|+..-.--++.. -| +-+|..|=..|--. ...||.|+..
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-RVKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 34569999998754444332 34 45688888888554 6789999874
No 445
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=31.78 E-value=5.5e+02 Score=25.84 Aligned_cols=130 Identities=16% Similarity=0.156 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccC------C-----------ChhHHHHHHHHHHHHhcChhcH
Q 039015 519 DRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSS------D-----------SEELITDSLAVLATLAEKLDGT 581 (685)
Q Consensus 519 ~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~------~-----------~~~~~~~al~~L~~La~~~~~~ 581 (685)
..-...++..+..|...++....+.+.+.++.+.+.|... . ...+...=...+..++.++.|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 4455567777888888877666677888888888877421 0 1223344566788899999999
Q ss_pred HHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015 582 IAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH 661 (685)
Q Consensus 582 ~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 661 (685)
..+-+.+....+..+.... +. .+...-+|.+|=...+...+. .|-..+.+|+..++-.|...|+.+-
T Consensus 158 ~lLe~~~if~~l~~i~~~~-~~--~~l~klil~~LDY~~~~~~R~----------iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLS-SR--DDLLKLILSSLDYSVDGHPRI----------ILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHCCHHHHHHHHHccC-ch--HHHHHHHHhhCCCCCccHHHH----------HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 8888888788888877653 22 233333444443332233333 3445788999999999999888764
No 446
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=31.61 E-value=26 Score=22.40 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=4.8
Q ss_pred cCcCccccC
Q 039015 282 TCPISLEIM 290 (685)
Q Consensus 282 ~CpIc~~~m 290 (685)
.||-|....
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 356555544
No 447
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=31.51 E-value=2.5e+02 Score=23.53 Aligned_cols=72 Identities=13% Similarity=0.266 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhccCCccccCcHHHHHHHHHHHHHHHhhhcc---CCchhhHHHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 039015 126 LFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFE---TDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLD 201 (685)
Q Consensus 126 ~~~~~l~~~L~~lP~~~~~~s~~v~e~v~~l~~q~~~a~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 201 (685)
..-.++..-|+..|- ++++-++.+..+..|.+++-.. ....+..+.+.+..+...|+-+-+.=...++.|++
T Consensus 4 ~~L~~L~~eL~~~~~----ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~~FE~~HP~l~~~lr~i~~ 78 (85)
T PF14357_consen 4 ELLEKLHQELEQNPP----LDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVERFEASHPKLAGILRNIMD 78 (85)
T ss_pred HHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 334445555555532 4467777777777766654433 45566777777777777776443333334444443
No 448
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=31.44 E-value=2e+02 Score=25.45 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=32.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHh
Q 039015 422 CIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVE 460 (685)
Q Consensus 422 ~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~ 460 (685)
+|+.|+.-|.++++++...|+.+|...+.++..-+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 488999999999999999999999999888766555554
No 449
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=31.31 E-value=2.2e+02 Score=30.31 Aligned_cols=67 Identities=22% Similarity=0.272 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCchhHHHHhhc-CCCcHHHHHHHhccCC---HHHHHHHHHHHHHhcCCCCcHHHHHh
Q 039015 478 EARQHAAATLFYIASIEEYRKLIGE-NPEAIPALVDMVRDGT---DRSKKNALVAIFGLLMHSGNHWRFLA 544 (685)
Q Consensus 478 e~~~~Aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~~~~n~~~iv~ 544 (685)
.+|..|.+.|.++....+.-..+.. +++.+..|+++++.++ ...+..|+.+|-.|+.+..-...++.
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 5678888999888877777776665 2349999999998654 57788999999999986665444433
No 450
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=31.10 E-value=3.5e+02 Score=31.71 Aligned_cols=133 Identities=20% Similarity=0.166 Sum_probs=91.2
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHH
Q 039015 505 EAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAI 584 (685)
Q Consensus 505 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i 584 (685)
.++|.|..-+++.+...+..++..+-+.+..-+ ...+..-++|.|.++.....+..++-.++.++..+... -.+.++
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~-lD~~~v 465 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR-LDKAAV 465 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-HHHHHh
Confidence 467788888888888889999998888876555 45666778888888865566778888888888888721 222222
Q ss_pred HhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCC
Q 039015 585 LHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGS 646 (685)
Q Consensus 585 ~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~ 646 (685)
++ .+..+.+.++.. .|......+.+...+....... ++.+. ..++|.++-+...+.
T Consensus 466 ~d--~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~--~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 466 LD--ELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMA--ENVLPLLIPLSVAPS 521 (700)
T ss_pred HH--HHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeeh--hhhhhhhhhhhhccc
Confidence 22 244455555555 7888888777777776653221 23333 467889988888775
No 451
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=29.55 E-value=45 Score=41.65 Aligned_cols=49 Identities=18% Similarity=0.419 Sum_probs=33.1
Q ss_pred CccCcCccc--cCCCc-eeccCcccccHHHHHHHHHc---------CCCCCCCCCccccCC
Q 039015 280 DFTCPISLE--IMKDP-VTLSTGHTYDRASILKWFRA---------GNSTCPKTGERLQSK 328 (685)
Q Consensus 280 ~~~CpIc~~--~m~dP-v~~~cghtfcr~ci~~~~~~---------~~~~CP~c~~~l~~~ 328 (685)
+-.|-||+. +-.-| +.+.|||.|.-.|..+.++. |--.||.|..++.+.
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 345666662 22234 35699999999998776653 234799999988654
No 452
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=29.22 E-value=7.2e+02 Score=26.40 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=59.0
Q ss_pred CCCCcCCCCcccCCCCCChhHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhHHhHHHHhhccCCCChhHHHHH
Q 039015 8 LGRRVLTFPAVHPCESISPSTLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISL 87 (685)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~~~~~~k~~~~~l~r~l~lL~~lleel~~~~~~~~~~~~~~l 87 (685)
..||..+.|-.-+.++++....+..+. +.-+..-.+.-.|++|-++|.--..+|+++...-...+|....-+
T Consensus 38 ~kr~~~~~~~~~~~~~~sl~~~~~A~~--------~~~P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY 109 (325)
T PF08317_consen 38 TKRRSTTAPDSSDEEPPSLEDYVVAGY--------CTVPMLELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREY 109 (325)
T ss_pred cCCcccCCCCcCCCCCCCHHHHHHHhc--------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 356666666544556655555443211 111222267889999999999999999999754322223232222
Q ss_pred ----HHHHHHHHHHHHHHHHhccCcchh-HhHHhhhH
Q 039015 88 ----SELHLTFQRIRYLLEDCTREGARL-WMLMKSDR 119 (685)
Q Consensus 88 ----~~L~~~l~~ak~Ll~~c~~~~Skl-yll~~~~~ 119 (685)
.+....|..=-.+++.++|--||- |.-.....
T Consensus 110 ~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~l 146 (325)
T PF08317_consen 110 YTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQL 146 (325)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566655444444 77666443
No 453
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=29.18 E-value=38 Score=37.65 Aligned_cols=171 Identities=20% Similarity=0.187 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCC
Q 039015 480 RQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSD 559 (685)
Q Consensus 480 ~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~ 559 (685)
+..-+.++..-+.++.++..+|....+|-.+.....+. ..+...+..++..++.. .|....|+......+
T Consensus 222 ~~~~~~~fv~k~e~e~n~~~iGk~~~~I~~~~~~ieS~-~hvVek~~~~~~s~~~~---------~~~t~ql~k~~l~~p 291 (763)
T KOG4231|consen 222 HPLLASTFVKKMEDEGNRSVIGKDENAIRQLISMIESD-QHVVEKACVALSSLARD---------VGVTMQLMKCDLMKP 291 (763)
T ss_pred chhHHHHHHHHhhCcccceeecccchhhhhhccccccc-chhhcccccccccHHHH---------HHHHHHHHHHHhcCc
Confidence 34456677777788889999988556677777666553 22333333333222211 111111222111111
Q ss_pred ChhHHHH----HHHHHHHHhcChhcHHHHHhc---CChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcC
Q 039015 560 SEELITD----SLAVLATLAEKLDGTIAILHH---GALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSP 632 (685)
Q Consensus 560 ~~~~~~~----al~~L~~La~~~~~~~~i~~~---g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~ 632 (685)
.+.+... .-.++-.+..-+.......+. ..+..+.+.+..+.+++.++.|..++.+++.+.. .+..+...+
T Consensus 292 Te~v~~l~~~~I~~l~~~v~~~~~~s~s~~Qe~~~K~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~--~r~~~~tsp 369 (763)
T KOG4231|consen 292 TETVLKLSSPDIISLLQVVVTLAFVSDSVSQEMLTKDMLKALKSLCAHKNPELQRQALLAVGNLAFCLE--NRRILITSP 369 (763)
T ss_pred chhhhhhccccHhhHHHHHhcCCchhhhHHhhhhHHHHHHHHHHHhcccChHHHHHHHHHHHHheeccc--ccccccCCh
Confidence 1111100 111111111111111111111 1233444433334499999999999999988742 233444445
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015 633 SLMGSLYSLLSQGSSRASKKASALIRILHE 662 (685)
Q Consensus 633 g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 662 (685)
.+-..+++++....++.-+.|+..++.+.+
T Consensus 370 ~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 370 SLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 566778888888877777777666666665
No 454
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.99 E-value=2.6e+02 Score=26.30 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=45.8
Q ss_pred cccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHH---HHhhHHHHHHhcCccccccCCCCCCccccccccCChhhhh
Q 039015 299 GHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLV---LKRIIQDWSVDNGVSIAEESGHKNRDITRTVLAGSLAAEG 375 (685)
Q Consensus 299 ghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~---l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 375 (685)
.+.||..|=.+-+. .||.|+.++.-..-.+... -..-...||..=|.++|= ...+.+
T Consensus 27 ~~~fC~kCG~~tI~----~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPW----------------t~~~L~ 86 (158)
T PF10083_consen 27 REKFCSKCGAKTIT----SCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPW----------------TENALE 86 (158)
T ss_pred HHHHHHHhhHHHHH----HCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCch----------------HHHHHH
Confidence 35689988766655 4999999886542222110 001134455555544431 001111
Q ss_pred hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc
Q 039015 376 AMKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF 412 (685)
Q Consensus 376 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~ 412 (685)
....|++.+..-+++++..--..|..|.++++.
T Consensus 87 ----aa~el~ee~eeLs~deke~~~~sl~dL~~d~Pk 119 (158)
T PF10083_consen 87 ----AANELIEEDEELSPDEKEQFKESLPDLTKDTPK 119 (158)
T ss_pred ----HHHHHHHHhhcCCHHHHHHHHhhhHHHhhcCCc
Confidence 223344444444566666666666666665543
No 455
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=28.93 E-value=3.6e+02 Score=30.44 Aligned_cols=113 Identities=17% Similarity=0.231 Sum_probs=65.5
Q ss_pred cCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcH----HHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc--
Q 039015 545 AGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGT----IAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI-- 618 (685)
Q Consensus 545 ~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~----~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~-- 618 (685)
.+.|+.+++.+. .+.+.+--+.++. +..+++. ..+.+.+.|+.|+.+|....+...+.+|+.+|..+..
T Consensus 20 ~~~v~~llkHI~---~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is 94 (475)
T PF04499_consen 20 PNFVDNLLKHID---TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRIS 94 (475)
T ss_pred ccHHHHHHHhcC---CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 345566666662 2333333333333 2222233 2334566699999988755578888888888766643
Q ss_pred -cC---------cHHHHHHHHhcCCcHHHHHHHHh--cCChHHHHHHHHHHHHHHHh
Q 039015 619 -NG---------GANVVALLVKSPSLMGSLYSLLS--QGSSRASKKASALIRILHEF 663 (685)
Q Consensus 619 -~~---------~~~~~~~l~~~~g~i~~L~~Ll~--~g~~~~k~~A~~lL~~l~~~ 663 (685)
+. +......+.. ...+..|+..+- .++...--...-++.++++.
T Consensus 95 ~n~~~~~~~~igpn~L~r~L~S-~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 95 RNAPQNEQSSIGPNPLTRQLVS-EETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred hccccccccCCCccHHHHHHhC-hHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 21 1334445554 556667777666 44555556666788888665
No 456
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=28.74 E-value=3.8e+02 Score=26.00 Aligned_cols=110 Identities=23% Similarity=0.206 Sum_probs=67.2
Q ss_pred cHHHHHH-HhccCCHHHHHHHHHHHHHhcCCCCcHHHHHh-cC-------------------ChHHHHHHhccCCChhHH
Q 039015 506 AIPALVD-MVRDGTDRSKKNALVAIFGLLMHSGNHWRFLA-AG-------------------AVPLLLNLLTSSDSEELI 564 (685)
Q Consensus 506 ~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-~G-------------------~v~~Lv~lL~~~~~~~~~ 564 (685)
.-+.|+. ++.+++++++..|+.+|..|-.....--...+ .+ .=..|+..|....+..+.
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 4445555 55677899999999999888654321111111 11 112345555455567788
Q ss_pred HHHHHHHHHHhcC-hhcHHHHHhcCChHHHHH----HhhcCCChhHHHHHHHHHHHHhcc
Q 039015 565 TDSLAVLATLAEK-LDGTIAILHHGALDMIMK----ILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 565 ~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~----lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
...+.+|..|... |..|-. .|-++.++. ++.+. ++.++..++.++..+..-
T Consensus 120 ~q~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHR-DPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 8899999988774 444432 233444444 55555 777888887777776543
No 457
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=28.47 E-value=1.3e+02 Score=23.70 Aligned_cols=44 Identities=27% Similarity=0.464 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHhcccCCCCCCHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 039015 172 KRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQCNQEVKFLDS 220 (685)
Q Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~E~~~l~~ 220 (685)
.++.+-|.+.+. +++..| ....|++.+|+.|......-+.+|++
T Consensus 9 ~~vL~~I~~~~~--~~G~~P---t~rEIa~~~g~~S~~tv~~~L~~Le~ 52 (65)
T PF01726_consen 9 KEVLEFIREYIE--ENGYPP---TVREIAEALGLKSTSTVQRHLKALER 52 (65)
T ss_dssp HHHHHHHHHHHH--HHSS------HHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCC---CHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 344444455444 444444 56789999999999999888888875
No 458
>PF04641 Rtf2: Rtf2 RING-finger
Probab=27.88 E-value=48 Score=34.10 Aligned_cols=35 Identities=23% Similarity=0.516 Sum_probs=31.3
Q ss_pred CCccCcCccccCCCceec-cCcccccHHHHHHHHHc
Q 039015 279 DDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRA 313 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~ 313 (685)
.-+.|+|+++.+.+||+. ..|+-|....|.+|+..
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~ 68 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD 68 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence 358999999999999965 68999999999999975
No 459
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=27.41 E-value=37 Score=32.33 Aligned_cols=25 Identities=20% Similarity=0.491 Sum_probs=16.9
Q ss_pred CccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcc
Q 039015 280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGER 324 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~ 324 (685)
.+.||+|+-+..+. ....||.|+.+
T Consensus 134 ~~vC~vCGy~~~ge--------------------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGE--------------------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCC--------------------CCCcCCCCCCh
Confidence 58899885554431 25679999865
No 460
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=27.21 E-value=2.6e+02 Score=24.47 Aligned_cols=69 Identities=14% Similarity=0.027 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-chhhHHHhhCCHHHHHHhhc------CCCHHHHHHHHHHhhc
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSI-FNRSCLVEVGCIPSLLKLLS------SKDSSTQENAIAALLN 447 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~-~~r~~i~~~G~ip~Lv~lL~------s~~~~~~~~A~~aL~n 447 (685)
..+..|...|.+.++.++..|+..|..+.++.. .....+....++-.++++.. ..+..+++.+...+..
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 357888899999999999999999999998553 34455666666666655311 1356777777766543
No 461
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=27.09 E-value=8.4e+02 Score=26.51 Aligned_cols=213 Identities=17% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCchhhHHHhh---CCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHH
Q 039015 393 SEEKNKVAYEVRLLTKSSIFNRSCLVEV---GCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIV 468 (685)
Q Consensus 393 ~~~~~~a~~~L~~La~~~~~~r~~i~~~---G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv 468 (685)
...+..++..+...+....+.=..+... +.+..|.+.... ....+...|+.-|..++....-+..+...+.+..|+
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Q ss_pred HHh----------------------------cCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHH---HhccC
Q 039015 469 DMV----------------------------KKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVD---MVRDG 517 (685)
Q Consensus 469 ~lL----------------------------~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~---lL~~~ 517 (685)
+-+ .+. ...-|..|+..|..|+..-+....-.- .+.|..++. --.+.
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd-~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~ 267 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSD-SDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSN 267 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS----SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccc-cCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcc
Q ss_pred CHHHHHHHHHHHHHhcCCCC-------------cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHH
Q 039015 518 TDRSKKNALVAIFGLLMHSG-------------NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAI 584 (685)
Q Consensus 518 ~~~~~~~A~~aL~nLs~~~~-------------n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i 584 (685)
+.+.|..|+..+..|+.... +-..+...-++|-|. -..+..+-++..|+..+...... -.+..+
T Consensus 268 ~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~-l~~~~l 344 (370)
T PF08506_consen 268 NWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQ-LPKEQL 344 (370)
T ss_dssp -HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGG-S-HHHH
T ss_pred cHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhh-CCHHHH
Q ss_pred HhcCChHHHHHHhhcCCChhHHHHHHHHH
Q 039015 585 LHHGALDMIMKILDSCTSRAGKEYCVSLL 613 (685)
Q Consensus 585 ~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L 613 (685)
.+ .+|.++..|+++ +..+...|+-++
T Consensus 345 ~~--~~~~l~~~L~~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 345 LQ--IFPLLVNHLQSS-SYVVHTYAAIAI 370 (370)
T ss_dssp HH--HHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred HH--HHHHHHHHhCCC-CcchhhhhhhhC
No 462
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.96 E-value=1.4e+02 Score=35.66 Aligned_cols=121 Identities=17% Similarity=0.231 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc-----CCCcH
Q 039015 433 KDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE-----NPEAI 507 (685)
Q Consensus 433 ~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-----~~g~i 507 (685)
+|.-+.-.++..|+.|+.+..-...+++.|+|..|+.+=+-. ++-.-.-..|+.+++....-+.+.. .+.++
T Consensus 365 ~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s---~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv 441 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS---ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVV 441 (1516)
T ss_pred ccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCch---hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHH
Confidence 566677788899999999998899999999998887775433 4444445567777777765554433 13455
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhc
Q 039015 508 PALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT 556 (685)
Q Consensus 508 ~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~ 556 (685)
..-+.+|......++++++.....--.....-..+-....+..|+.+|+
T Consensus 442 ~~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~ 490 (1516)
T KOG1832|consen 442 KLAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILK 490 (1516)
T ss_pred HHHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6666677666666666655332211122222233334556666776664
No 463
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=26.94 E-value=1.1e+03 Score=28.00 Aligned_cols=165 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred hHH-HHHH---HHHhhHHhHHH----------HhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhccCcchhHhHHhhhH
Q 039015 54 NAL-KAIR---QVHNLLIFLEE----------LRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDR 119 (685)
Q Consensus 54 ~~~-~l~r---~l~lL~~llee----------l~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~~ 119 (685)
..+ +|++ .-.++.|+|.| -+-+..+..|+...=|+-|.... +||.|-+.-+ ...+| .+.
T Consensus 490 ~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~-~~~~~s~g~~-~a~~L-----k~e 562 (762)
T PLN03229 490 NLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS-RAKALSEKKS-KAEKL-----KAE 562 (762)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH-Hhhhhcccch-hhhhh-----hHH
Q ss_pred HHHHHHH------HHHHHHHHhhcc-----CCccccCcHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhcccCC
Q 039015 120 VSNQLRL------FIRAIGTALDVL-----PLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDG 188 (685)
Q Consensus 120 i~~~f~~------~~~~l~~~L~~l-----P~~~~~~s~~v~e~v~~l~~q~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (685)
+-.+|.+ +..+++..+..+ .... +++++.++.|+.+.++.. .+|..++. ..+
T Consensus 563 i~kki~e~~~~~~~kek~ea~~aev~~~g~s~~~-~~~~~lkeki~~~~~Ei~--------------~eie~v~~--S~g 625 (762)
T PLN03229 563 INKKFKEVMDRPEIKEKMEALKAEVASSGASSGD-ELDDDLKEKVEKMKKEIE--------------LELAGVLK--SMG 625 (762)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhcCccccC-CCCHHHHHHHHHHHHHHH--------------HHHHHHHh--ccC
Q ss_pred CCCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHh
Q 039015 189 IRPDKSEVKRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLS 246 (685)
Q Consensus 189 ~~~~~~~l~~~~~~l~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~ 246 (685)
-... ..++.--.+-+-+-..+.+..+++|+++| +.+-. +--...-|+..+.+|+
T Consensus 626 L~~~-~~~k~e~a~~~~~p~~~~k~KIe~L~~eI-kkkIe--~av~ss~LK~k~E~Lk 679 (762)
T PLN03229 626 LEVI-GVTKKNKDTAEQTPPPNLQEKIESLNEEI-NKKIE--RVIRSSDLKSKIELLK 679 (762)
T ss_pred chhh-hhhhhhhcccccCCChhhHHHHHHHHHHH-HHHHH--HHhcchhHHHHHHHHH
No 464
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.79 E-value=4.1e+02 Score=27.02 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=22.4
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
.+-..-.|.=|+-.+. .++ ..++.+ .....+||.|+.-+..
T Consensus 193 vpl~g~~C~GC~m~l~------~~~---~~~V~~--~d~iv~CP~CgRILy~ 233 (239)
T COG1579 193 VPLEGRVCGGCHMKLP------SQT---LSKVRK--KDEIVFCPYCGRILYY 233 (239)
T ss_pred EeecCCcccCCeeeec------HHH---HHHHhc--CCCCccCCccchHHHh
Confidence 3344566776664332 222 234443 3335689999987654
No 465
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=26.73 E-value=5.8e+02 Score=24.57 Aligned_cols=61 Identities=23% Similarity=0.349 Sum_probs=48.6
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcC------ChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015 506 AIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAG------AVPLLLNLLTSSDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 506 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G------~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~ 577 (685)
.++.++++..+.+...+..|+..|.-. ++.| .+|.|+.|. +++++.++..|...+..+...
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~i----------l~qGLvnP~~cvp~lIAL~-ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELI----------LRQGLVNPKQCVPTLIALE-TSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH----------HhcCCCChHHHHhHhhhhh-CCCChHHHHHHHHHHHHHHHH
Confidence 466777777788888888888888765 4444 578889988 788999999999999999764
No 466
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=26.19 E-value=9.1 Score=31.62 Aligned_cols=39 Identities=21% Similarity=0.514 Sum_probs=30.5
Q ss_pred CccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
.-.|-||......| |..||..|-.+ ...|.+|++.+.++
T Consensus 54 ~~kC~iCk~~vHQ~-----GshYC~tCAY~-----KgiCAMCGKki~nT 92 (100)
T KOG3476|consen 54 LAKCRICKQLVHQP-----GSHYCQTCAYK-----KGICAMCGKKILNT 92 (100)
T ss_pred cchhHHHHHHhcCC-----cchhHhHhhhh-----hhHHHHhhhHhhcc
Confidence 35799999998887 77899999654 45799999877543
No 467
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=25.96 E-value=2.2e+02 Score=30.34 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhccccCcchhHHHHhcC--cHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCchhHHHH----hhc--CCC
Q 039015 436 STQENAIAALLNLSKHCKSKSMVVESG--GLDFIVDMVKKG--LKVEARQHAAATLFYIASIEEYRKL----IGE--NPE 505 (685)
Q Consensus 436 ~~~~~A~~aL~nLs~~~~~k~~i~~~g--~i~~Lv~lL~~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~----i~~--~~g 505 (685)
.++..|+..|..+......-..+...+ .+..|+++++.+ ...+++..|..+|..++........ +|. .+|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 356677777777776667777777554 999999999854 3578899999999999876532222 221 467
Q ss_pred cHHHHHHH
Q 039015 506 AIPALVDM 513 (685)
Q Consensus 506 ~i~~Lv~l 513 (685)
.++.+++-
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 77777664
No 468
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=25.81 E-value=3.5e+02 Score=24.96 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCC-chhhHHHhhCCHHH-HHHhhcC---CCHHHHHHHHHHhhccc
Q 039015 379 LLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSI-FNRSCLVEVGCIPS-LLKLLSS---KDSSTQENAIAALLNLS 449 (685)
Q Consensus 379 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~-~~r~~i~~~G~ip~-Lv~lL~s---~~~~~~~~A~~aL~nLs 449 (685)
.++..|.++|.+ .++.++..|+..|..+.++.. .-...++.-+++.. |++++.. .+..++...+..+...+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 457888888874 588899999999999988543 34566777899987 9999863 23578888888887665
No 469
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=25.53 E-value=3.9e+02 Score=23.26 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=47.4
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHH---hcC---ChHHHHHHHHHHHHH
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLL---SQG---SSRASKKASALIRIL 660 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll---~~g---~~~~k~~A~~lL~~l 660 (685)
+..|.+=|.+. ++..+-.|+.+|-.++.++++.....+.. .....-++.+. ..| +..+++++..++...
T Consensus 39 ~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~-~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 39 VDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVAS-NDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHH-hHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 34455556666 89999999999999999999888887776 33333333221 112 557888888887654
No 470
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.35 E-value=6.5e+02 Score=30.26 Aligned_cols=175 Identities=17% Similarity=0.224 Sum_probs=86.5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHh-hccccCcchhHHHHhcCcHHH-HHHH----h---cCCCCHHHHHHHHHHHHHhc
Q 039015 421 GCIPSLLKLLSSKDSSTQENAIAAL-LNLSKHCKSKSMVVESGGLDF-IVDM----V---KKGLKVEARQHAAATLFYIA 491 (685)
Q Consensus 421 G~ip~Lv~lL~s~~~~~~~~A~~aL-~nLs~~~~~k~~i~~~g~i~~-Lv~l----L---~~~~~~e~~~~Aa~~L~~Ls 491 (685)
..+|.++++|.++...+...|+.++ .+|...+.+...|..++-+.+ +..+ + +.+...|-.-..=++...++
T Consensus 498 ~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~ 577 (960)
T KOG1992|consen 498 ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIIS 577 (960)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHH
Confidence 4599999999999999999998888 455555555666665443332 2222 2 22212121112222233334
Q ss_pred CchhHHHHhhcCCCcHHHHHHHh----ccCC-HHH---HHHHHHHHHHhcC-CCCcHHHHHhcCChHHHHHHhccCCChh
Q 039015 492 SIEEYRKLIGENPEAIPALVDMV----RDGT-DRS---KKNALVAIFGLLM-HSGNHWRFLAAGAVPLLLNLLTSSDSEE 562 (685)
Q Consensus 492 ~~~~~~~~i~~~~g~i~~Lv~lL----~~~~-~~~---~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~ 562 (685)
..++.-...+ +.++..|.+++ ++++ |.. .-.+..++.+-.. .+.......+...+|.+-.+| +.+=.+
T Consensus 578 i~~~~i~p~~--~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il-~eDI~E 654 (960)
T KOG1992|consen 578 ILQSAIIPHA--PELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTIL-SEDIQE 654 (960)
T ss_pred hCHHhhhhhh--hHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4333322211 22444555544 3433 322 2244444444432 222333334444666666666 322344
Q ss_pred HHHHHHHHHHHHhcChhc-----HHH---------H-HhcCChHHHHHHhh
Q 039015 563 LITDSLAVLATLAEKLDG-----TIA---------I-LHHGALDMIMKILD 598 (685)
Q Consensus 563 ~~~~al~~L~~La~~~~~-----~~~---------i-~~~g~v~~Lv~lL~ 598 (685)
...-++-+|+.|..+..+ -.. + -..|.||.++.+++
T Consensus 655 fiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 655 FIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence 455566666666543333 111 1 23556888888655
No 471
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=25.31 E-value=29 Score=35.47 Aligned_cols=52 Identities=19% Similarity=0.469 Sum_probs=32.3
Q ss_pred CCCCccCcCccccCCC-ce--------eccCcccccHHHHH-HHHHcC---------CCCCCCCCccccCC
Q 039015 277 TPDDFTCPISLEIMKD-PV--------TLSTGHTYDRASIL-KWFRAG---------NSTCPKTGERLQSK 328 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~d-Pv--------~~~cghtfcr~ci~-~~~~~~---------~~~CP~c~~~l~~~ 328 (685)
-+..|.|++|...+.. |. .++|...+|..-+. .|+-+| .+.||.|++.+.++
T Consensus 158 s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 158 SKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred ccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcch
Confidence 3677999999987763 21 12333333333322 466543 46899999998874
No 472
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=25.25 E-value=35 Score=25.56 Aligned_cols=13 Identities=38% Similarity=0.851 Sum_probs=11.6
Q ss_pred CCCCCccCcCccc
Q 039015 276 LTPDDFTCPISLE 288 (685)
Q Consensus 276 ~~~~~~~CpIc~~ 288 (685)
.+|+++.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 6899999999974
No 473
>PRK06424 transcription factor; Provisional
Probab=25.18 E-value=2.3e+02 Score=26.37 Aligned_cols=63 Identities=19% Similarity=0.312 Sum_probs=44.1
Q ss_pred cCcHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHH---HHHhcccCC-CCCCHHHHHHHHHhcCCC
Q 039015 144 DVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVI---RILGRFEDG-IRPDKSEVKRVLDYLGIT 206 (685)
Q Consensus 144 ~~s~~v~e~v~~l~~q~~~a~~~~~~~~~~~~~~~~---~~l~~~~~~-~~~~~~~l~~~~~~l~l~ 206 (685)
|+.++..+.++.+...++.++....-..+++.+.+- +.+...+++ ..|+.+.+..++..||+.
T Consensus 73 d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgvs 139 (144)
T PRK06424 73 KASDEDLDIVEDYAELVKNARERLSMSQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGIT 139 (144)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCC
Confidence 345555566666667777777777777888887662 455554544 568999999999999975
No 474
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=25.05 E-value=4.3e+02 Score=27.42 Aligned_cols=70 Identities=20% Similarity=0.105 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchh-hHHHhhCCHHHHHH----hhc--------CCCHHHHHHHHHHh
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNR-SCLVEVGCIPSLLK----LLS--------SKDSSTQENAIAAL 445 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r-~~i~~~G~ip~Lv~----lL~--------s~~~~~~~~A~~aL 445 (685)
..++.++..+...+++.|.+++..|..+....+... ..+...|..+.+-+ +|. .+...+...|.-+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 457888999988899999999999999987443222 23666676554443 332 13345666666666
Q ss_pred hcc
Q 039015 446 LNL 448 (685)
Q Consensus 446 ~nL 448 (685)
..|
T Consensus 199 ~~L 201 (282)
T PF10521_consen 199 LSL 201 (282)
T ss_pred HHH
Confidence 666
No 475
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=24.92 E-value=54 Score=38.45 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=48.9
Q ss_pred CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHH-----cCCCCCCCCCccccCCCCcccHHHHhhHHHHH
Q 039015 276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFR-----AGNSTCPKTGERLQSKELLVNLVLKRIIQDWS 344 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~-----~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~ 344 (685)
...-.+.|||++.-|.-|+-- .|+|--|-.. .|+- .+...||+|.+......++.+..+..++...-
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~--~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~ 374 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDA--LSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQ 374 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecch--hhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhcc
Confidence 556679999999999988754 7887544433 2332 14568999999988888888888777765543
No 476
>KOG4713 consensus Cyclin-dependent kinase 2-associated protein [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=24.82 E-value=93 Score=29.54 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=32.6
Q ss_pred HhhHHhHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhc
Q 039015 63 HNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCT 105 (685)
Q Consensus 63 ~lL~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~ 105 (685)
.-|..++||+...-.|--.-...+.+.|..-+..||.|+..|-
T Consensus 138 ~~LL~vieEmgkeirpTyagsks~~ERLKr~I~hAR~lVRecl 180 (189)
T KOG4713|consen 138 ADLLSVIEEMGKEIRPTYAGSKSAMERLKRDIIHARLLVRECL 180 (189)
T ss_pred HHHHHHHHHHhcccCccccccccHHHHHHhhHHHHHHHHHHHH
Confidence 3556788998743334344457788999999999999999996
No 477
>PLN03086 PRLI-interacting factor K; Provisional
Probab=24.65 E-value=78 Score=36.29 Aligned_cols=51 Identities=14% Similarity=0.311 Sum_probs=27.4
Q ss_pred CCCCCccCcCccccCC------------CceeccCcccccHHHHHHHHHc----CCCCCCCCCcccc
Q 039015 276 LTPDDFTCPISLEIMK------------DPVTLSTGHTYDRASILKWFRA----GNSTCPKTGERLQ 326 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~------------dPv~~~cghtfcr~ci~~~~~~----~~~~CP~c~~~l~ 326 (685)
.+++++.|+.|...+. .|+.-+||..+.+.-+..+... ....|+.|+..+.
T Consensus 449 el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 449 EAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred ccccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCccc
Confidence 5566777777766553 2222236665555555554432 1335666666553
No 478
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=24.29 E-value=6e+02 Score=23.84 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhccCCccccCcHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHhcC
Q 039015 125 RLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLDYLG 204 (685)
Q Consensus 125 ~~~~~~l~~~L~~lP~~~~~~s~~v~e~v~~l~~q~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~ 204 (685)
..+...|.+++.-=|+. ++.|.+-|..+..+++. ....+..-+.++..+++.|...+ +-.++..++-+..
T Consensus 64 ~Kl~~gl~~A~~KRpVs----~e~ie~~v~~ie~~Lr~-~g~~EV~S~~IG~~VM~~Lk~lD-----~VAYvRFASVYr~ 133 (156)
T COG1327 64 EKLRRGLIRACEKRPVS----SEQIEEAVSHIERQLRS-SGEREVPSKEIGELVMEELKKLD-----EVAYVRFASVYRS 133 (156)
T ss_pred HHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhcc-----hhhhhhhhhHhcc
Confidence 34677788888888864 35666777778888774 44555667789999999887322 3467777778888
Q ss_pred CCChHHHHHHHHHHHHHH
Q 039015 205 ITKWSQCNQEVKFLDSEI 222 (685)
Q Consensus 205 l~~~~~~~~E~~~l~~~~ 222 (685)
+.+..+..+|+..|....
T Consensus 134 F~dv~~F~e~i~~l~~~~ 151 (156)
T COG1327 134 FKDVDDFEEEIEELTKEG 151 (156)
T ss_pred cCCHHHHHHHHHHHHhcc
Confidence 989888888887776643
No 479
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=24.05 E-value=55 Score=34.41 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=36.1
Q ss_pred CccCcCccccCCC----ceeccCcc-----cccHHHHHHHHH-cCCCCCCCCCccccCC
Q 039015 280 DFTCPISLEIMKD----PVTLSTGH-----TYDRASILKWFR-AGNSTCPKTGERLQSK 328 (685)
Q Consensus 280 ~~~CpIc~~~m~d----Pv~~~cgh-----tfcr~ci~~~~~-~~~~~CP~c~~~l~~~ 328 (685)
+..|-||...... |...+|.. ...+.|++.|+. .+...|..|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 5889999986643 56666543 357999999998 3578999998866543
No 480
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=23.62 E-value=27 Score=36.80 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=31.8
Q ss_pred CCCccCcCccccCCCceec---cCc--ccccHHHHHHHHHcCCCCCCCCCc
Q 039015 278 PDDFTCPISLEIMKDPVTL---STG--HTYDRASILKWFRAGNSTCPKTGE 323 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~---~cg--htfcr~ci~~~~~~~~~~CP~c~~ 323 (685)
...-.||+|+..-.--|+. .-| +-+|..|=..|--. ...||.|+.
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~ 234 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-RVKCSNCEQ 234 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-CccCCCCCC
Confidence 3568999999876544432 234 34688888888554 678999986
No 481
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.56 E-value=1.2e+03 Score=26.97 Aligned_cols=83 Identities=11% Similarity=0.183 Sum_probs=61.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhccCcchhHhHHhhhHHHHHHHHHHHHHHHHhhccCCccccCcHHHHHHHHHHH-
Q 039015 79 IPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVM- 157 (685)
Q Consensus 79 ~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~~i~~~f~~~~~~l~~~L~~lP~~~~~~s~~v~e~v~~l~- 157 (685)
.-+..-.-|.++..-+.+...|....- -++...++.+.+.-+..+...++.||----.+..++-+|++.|.
T Consensus 162 a~~~Le~~L~~ie~~F~~f~~lt~~GD--------~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~ 233 (560)
T PF06160_consen 162 AIEELEKQLENIEEEFSEFEELTENGD--------YLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKE 233 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHH
Confidence 334556666677777777777766655 24778999999999999999999999766667777778887777
Q ss_pred --HHHHhhhccCCc
Q 039015 158 --RQARKAIFETDP 169 (685)
Q Consensus 158 --~q~~~a~~~~~~ 169 (685)
++|....|..+.
T Consensus 234 gy~~m~~~gy~l~~ 247 (560)
T PF06160_consen 234 GYREMEEEGYYLEH 247 (560)
T ss_pred HHHHHHHCCCCCCC
Confidence 677766666654
No 482
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.30 E-value=4.6e+02 Score=31.42 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=30.7
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-HHHHHhcC
Q 039015 506 AIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN-HWRFLAAG 546 (685)
Q Consensus 506 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-~~~iv~~G 546 (685)
.+|.+++.|+.++.-+-..|+.++-.+-.-.++ ...+-.++
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~ 540 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAE 540 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchh
Confidence 799999999999988888999998887654443 44443333
No 483
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=23.25 E-value=4.4e+02 Score=27.35 Aligned_cols=114 Identities=15% Similarity=0.242 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhhccCCccccCcHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhcccCCCCCCHHHHH--H
Q 039015 121 SNQLRLFIRAIGTALDVLPLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVK--R 198 (685)
Q Consensus 121 ~~~f~~~~~~l~~~L~~lP~~~~~~s~~v~e~v~~l~~q~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~--~ 198 (685)
+.|++.....|.+.++ ++.-++..+|++.-++-.+..+.+.-+-..+..++++|..-. ...+.++ +
T Consensus 229 ~~QM~s~~~nIe~~~~-----------~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~-~~lse~~e~y 296 (384)
T KOG0972|consen 229 LEQMNSMHKNIEQKVG-----------NVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRAT-DTLSELREKY 296 (384)
T ss_pred HHHHHHHHHHHHHhhc-----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4455555555555544 344466677777777777777777777777888777665211 1222333 2
Q ss_pred HHHhcCCCC----hHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHh
Q 039015 199 VLDYLGITK----WSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLS 246 (685)
Q Consensus 199 ~~~~l~l~~----~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~ 246 (685)
-....|+.+ ..++-.|++.++.++++......|.+-...|++-+.-|+
T Consensus 297 ~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk 348 (384)
T KOG0972|consen 297 KQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLK 348 (384)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHH
Confidence 222245544 455567777788887433222223333444444444333
No 484
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=22.99 E-value=1.2e+03 Score=26.80 Aligned_cols=133 Identities=19% Similarity=0.202 Sum_probs=65.4
Q ss_pred HHHHHHhhcC----CCHHHHHHHHHHhhcccc----CcchhHHHHhcCcHHHHHHHhcCC---CCHHHHHHHHHHHHHhc
Q 039015 423 IPSLLKLLSS----KDSSTQENAIAALLNLSK----HCKSKSMVVESGGLDFIVDMVKKG---LKVEARQHAAATLFYIA 491 (685)
Q Consensus 423 ip~Lv~lL~s----~~~~~~~~A~~aL~nLs~----~~~~k~~i~~~g~i~~Lv~lL~~~---~~~e~~~~Aa~~L~~Ls 491 (685)
+..+..++.+ ..+.+...|+-++.+|.. +.+.....+....++.+...|... .+.+.+..++.+|.|+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 3344455544 234555666666655542 111111111223445555444321 13333444555555543
Q ss_pred CchhHHHHhhcCCCcHHHHHHHhc-cC--CHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc-CCChhHHHHH
Q 039015 492 SIEEYRKLIGENPEAIPALVDMVR-DG--TDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS-SDSEELITDS 567 (685)
Q Consensus 492 ~~~~~~~~i~~~~g~i~~Lv~lL~-~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-~~~~~~~~~a 567 (685)
. ...++.|...+. +. +...+..|+.||..++..... .+-+.|+.++.+ ..+.+++..|
T Consensus 475 ~-----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-------~v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 475 H-----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-------KVQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred C-----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-------HHHHHHHHHHcCCCCChHHHHHH
Confidence 2 345666666665 21 357888999999988643322 233456777643 2355666555
Q ss_pred HHHHHH
Q 039015 568 LAVLAT 573 (685)
Q Consensus 568 l~~L~~ 573 (685)
..+|..
T Consensus 537 ~~~lm~ 542 (574)
T smart00638 537 VLVLME 542 (574)
T ss_pred HHHHHh
Confidence 544443
No 485
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.82 E-value=45 Score=22.72 Aligned_cols=10 Identities=30% Similarity=0.720 Sum_probs=7.6
Q ss_pred CCCCCCCCcc
Q 039015 315 NSTCPKTGER 324 (685)
Q Consensus 315 ~~~CP~c~~~ 324 (685)
...||.|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 4589999875
No 486
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=22.80 E-value=4.6e+02 Score=22.00 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=44.8
Q ss_pred chhhHHHHHHHHHhhHHhHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhccCcchhHhHHhhhHHHHHHHHHHHH
Q 039015 51 NKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSDRVSNQLRLFIRA 130 (685)
Q Consensus 51 ~k~~~~~l~r~l~lL~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~~i~~~f~~~~~~ 130 (685)
.|.|=..|+.+|+-..|||+.|...+. ++..-....+.-.---+|++.|+..-. ..|+.....|..+-.+
T Consensus 3 l~~hRe~LV~rI~~v~plLD~Ll~n~~-it~E~y~~V~a~~T~qdkmRkLld~v~---------akG~~~k~~F~~iL~e 72 (85)
T cd08324 3 LKSNRELLVTHIRNTQCLVDNLLKNDY-FSTEDAEIVCACPTQPDKVRKILDLVQ---------SKGEEVSEYFLYLLQQ 72 (85)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhccCC-ccHHHHHHHHhCCCCHHHHHHHHHHHH---------hcCchHHHHHHHHHHH
Confidence 467778999999999999999986653 444433333333333445555544322 1125556666666666
Q ss_pred HHHH
Q 039015 131 IGTA 134 (685)
Q Consensus 131 l~~~ 134 (685)
+..+
T Consensus 73 ~~~~ 76 (85)
T cd08324 73 LADA 76 (85)
T ss_pred HHHh
Confidence 5554
No 487
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=22.40 E-value=9.1e+02 Score=31.46 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=70.2
Q ss_pred hCCHHHHHH----hhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh
Q 039015 420 VGCIPSLLK----LLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE 495 (685)
Q Consensus 420 ~G~ip~Lv~----lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~ 495 (685)
.+..|.++. +|.+.++.+++-+......+-..-+. .....++..|+..+.+| +......|..+|..|+...
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds---~~qqeVv~~Lvthi~sg-~~~ev~~aL~vL~~L~~~~- 504 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS---YCQQEVVGALVTHIGSG-NSQEVDAALDVLCELAEKN- 504 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcc-
Confidence 356777765 56778999999988888777654432 23344788899998888 6666688999999998633
Q ss_pred HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015 496 YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH 535 (685)
Q Consensus 496 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 535 (685)
...+..-...|..+++.+.+=+..-.......|..|+..
T Consensus 505 -~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~ 543 (1426)
T PF14631_consen 505 -PSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFS 543 (1426)
T ss_dssp -HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 333333233566666666665554445567777777643
No 488
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.15 E-value=75 Score=39.52 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=25.4
Q ss_pred CccCcCccccCCCceeccCccc-----ccHHHHHHHHH--cCCCCCCCCCccccC
Q 039015 280 DFTCPISLEIMKDPVTLSTGHT-----YDRASILKWFR--AGNSTCPKTGERLQS 327 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~~cght-----fcr~ci~~~~~--~~~~~CP~c~~~l~~ 327 (685)
.+.||-|+........-.||.. +|..|=.+.-. .+...||.|+.++..
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~ 721 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTP 721 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccc
Confidence 3778888775444322237743 36666211000 012379999987654
No 489
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=21.95 E-value=39 Score=24.95 Aligned_cols=13 Identities=38% Similarity=0.851 Sum_probs=8.7
Q ss_pred CCCCCccCcCccc
Q 039015 276 LTPDDFTCPISLE 288 (685)
Q Consensus 276 ~~~~~~~CpIc~~ 288 (685)
.+|+++.||+|.-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 7899999999974
No 490
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=21.72 E-value=1.2e+03 Score=26.28 Aligned_cols=139 Identities=19% Similarity=0.139 Sum_probs=70.1
Q ss_pred cHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHH
Q 039015 506 AIPALVDMVRD-GTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAI 584 (685)
Q Consensus 506 ~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i 584 (685)
.+..+++.|.+ .+.-.++-|+..|.-++.++..+-.=-..-+|..+++.-....+..+...+=.++..++++..-+.
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-- 407 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-- 407 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--
Confidence 45677888876 667889999999999998776442211222455555555333344444444455556665422111
Q ss_pred HhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHH
Q 039015 585 LHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKAS 654 (685)
Q Consensus 585 ~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~ 654 (685)
|..+..++-.. +...--.++..+..++..-..+-...+. ..+.|.++.--.+.+..+|+.|.
T Consensus 408 -----I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~diaP~~iqay~S~SS~VRKtaV 469 (516)
T KOG2956|consen 408 -----IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL--PDIAPCVIQAYDSTSSTVRKTAV 469 (516)
T ss_pred -----HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh--hhhhhHHHHHhcCchHHhhhhHH
Confidence 12222222212 3333334444555666543322222222 34455555555555555554443
No 491
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.56 E-value=67 Score=28.33 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=9.4
Q ss_pred CCCCCCCCccccCC
Q 039015 315 NSTCPKTGERLQSK 328 (685)
Q Consensus 315 ~~~CP~c~~~l~~~ 328 (685)
.-+||+|+..+...
T Consensus 26 PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 26 PIVCPKCGTEFPPE 39 (108)
T ss_pred CccCCCCCCccCcc
Confidence 44688888776543
No 492
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=21.51 E-value=8.9e+02 Score=24.85 Aligned_cols=220 Identities=13% Similarity=0.120 Sum_probs=113.4
Q ss_pred HHHhhcCCCHHHHHHHHHHhhccccCcc-hhHHHHhcCcHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCchhHHHHhhcC
Q 039015 426 LLKLLSSKDSSTQENAIAALLNLSKHCK-SKSMVVESGGLDFIVDMVKKG-LKVEARQHAAATLFYIASIEEYRKLIGEN 503 (685)
Q Consensus 426 Lv~lL~s~~~~~~~~A~~aL~nLs~~~~-~k~~i~~~g~i~~Lv~lL~~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~ 503 (685)
|-..|.++|..+|.+|+..|..+-..-+ +. ....-+..|+..+.+. .+......++..+..|...........
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~-- 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA-- 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH--
Confidence 4456788999999999988876543222 21 2222245555554321 133444444555555543222111110
Q ss_pred CCcHHHHHHHhc--cCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcH
Q 039015 504 PEAIPALVDMVR--DGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGT 581 (685)
Q Consensus 504 ~g~i~~Lv~lL~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~ 581 (685)
...+..+.+-.. .-....+..+...|..|..+......-...+.+..+++++....++.-...+..++..+...-..
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~- 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI- 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-
Confidence 112233332221 11234566677777777544322222233456778888886566787777777777777554221
Q ss_pred HHHHhcCChHHHHHHhh--------cCC-Ch--hHHHHHHHHHHH-HhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHH
Q 039015 582 IAILHHGALDMIMKILD--------SCT-SR--AGKEYCVSLLLA-LCINGGANVVALLVKSPSLMGSLYSLLSQGSSRA 649 (685)
Q Consensus 582 ~~i~~~g~v~~Lv~lL~--------~~~-s~--~~~e~a~~~L~~-L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~ 649 (685)
...+..+.+.+. .++ +| -.++.-...|.. ++.. +... .-++|.|++=+.++++.+
T Consensus 158 -----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~--~~fa------~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 158 -----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST--PLFA------PFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred -----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc--HhhH------HHHHHHHHHHHcCCCcHH
Confidence 112333433332 111 11 233433333333 3433 3221 223889999999999998
Q ss_pred HHHHHHHHHHHHHhh
Q 039015 650 SKKASALIRILHEFY 664 (685)
Q Consensus 650 k~~A~~lL~~l~~~~ 664 (685)
|.-+...|..+-..+
T Consensus 225 K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 225 KLDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHHHC
Confidence 877776666655433
No 493
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=21.41 E-value=2e+02 Score=24.62 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=45.4
Q ss_pred cchhhHHHHHHHHHhhHHhHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhccCcch
Q 039015 50 TNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGAR 110 (685)
Q Consensus 50 ~~k~~~~~l~r~l~lL~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sk 110 (685)
+.|+|=..|++++.-..|+|+.|...+. +...-...+..-...-++|+.|+..-..+|++
T Consensus 10 ~L~~~R~~Lv~~l~~v~~ilD~Ll~~~V-lt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~~ 69 (94)
T cd08329 10 LIRKNRMALFQHLTSVLPILDSLLSANV-ITEQEYDVIKQKTQTPLQARELIDTVLVKGNA 69 (94)
T ss_pred HHHHhHHHHHHHHhhhHHHHHHHHHcCC-CCHHHHHHHHcCCChHHHHHHHHHHHHhhhHH
Confidence 6799999999999889999999986653 56655555555555568999998886545533
No 494
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=21.36 E-value=6.2e+02 Score=28.59 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=51.0
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--------------hHHHHhhcCCCcHHHHHHHhcc-CCHH
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--------------EYRKLIGENPEAIPALVDMVRD-GTDR 520 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--------------~~~~~i~~~~g~i~~Lv~lL~~-~~~~ 520 (685)
..+.+.+.|+.|+..|....+.+.+.+|+.+|..+.... +.-..+.. ...|..|++.+-. ....
T Consensus 56 ewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S-~~~v~~Ll~~mL~~~~~s 134 (475)
T PF04499_consen 56 EWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVS-EETVEKLLDIMLNSQGGS 134 (475)
T ss_pred HHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhC-hHHHHHHHHHHhcCCCcc
Confidence 344579999999999986668899999999887764321 22333444 5677777775542 2244
Q ss_pred HHHHHHHHHHHhc
Q 039015 521 SKKNALVAIFGLL 533 (685)
Q Consensus 521 ~~~~A~~aL~nLs 533 (685)
+..+++..+..|-
T Consensus 135 ~lvn~v~IlieLI 147 (475)
T PF04499_consen 135 SLVNGVSILIELI 147 (475)
T ss_pred hHHHHHHHHHHHH
Confidence 5556666666554
No 495
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.30 E-value=9.7e+02 Score=28.38 Aligned_cols=145 Identities=15% Similarity=0.132 Sum_probs=83.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhc--Cch----hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015 465 DFIVDMVKKGLKVEARQHAAATLFYIA--SIE----EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN 538 (685)
Q Consensus 465 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls--~~~----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 538 (685)
|.|.+-|+.. +.++|.+|+-+++++- .++ +....+.+ .-...|.++|+++-+.++..|..-+..... -
T Consensus 177 p~l~R~L~a~-Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~--kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s---~ 250 (1005)
T KOG1949|consen 177 PILWRGLKAR-NSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ--KQFEELYSLLEDPYPMVRSTAILGVCKITS---K 250 (1005)
T ss_pred HHHHHhhccC-chhhhhhHHHHHHHhccCCCCCccHHHHHHHHH--HHHHHHHHHhcCCCchHHHHHHHHHHHHHH---H
Confidence 4455667777 8899999999999874 222 23444443 247788999999888877766543332210 0
Q ss_pred HHHHHhcCChHHHHHH----hccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015 539 HWRFLAAGAVPLLLNL----LTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL 614 (685)
Q Consensus 539 ~~~iv~~G~v~~Lv~l----L~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~ 614 (685)
-..++-..++.-|+.- +..+...+++......|-.++.+|..-..+- -++|.|-..|.+. +..++-.++.+|.
T Consensus 251 fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~-se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 251 FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDN-SEKVRVAFVDMLL 327 (1005)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhcc-chhHHHHHHHHHH
Confidence 1112222222222222 2123344666666666666666655444331 1356555566666 8888888888887
Q ss_pred HHhc
Q 039015 615 ALCI 618 (685)
Q Consensus 615 ~L~~ 618 (685)
.+=.
T Consensus 328 ~ik~ 331 (1005)
T KOG1949|consen 328 KIKA 331 (1005)
T ss_pred HHHh
Confidence 6644
No 496
>PRK11595 DNA utilization protein GntX; Provisional
Probab=21.27 E-value=62 Score=32.51 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=26.6
Q ss_pred cCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 282 TCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 282 ~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
.|.+|...+..+ .+..|..|...|-.- ...||.|+.+..
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~-~~~C~~Cg~~~~ 45 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTL-KTCCPQCGLPAT 45 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcc-cCcCccCCCcCC
Confidence 699999876322 234788888775332 357999997654
No 497
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.11 E-value=46 Score=33.65 Aligned_cols=51 Identities=12% Similarity=0.229 Sum_probs=36.3
Q ss_pred CCCCCccCcCccccCCCceec----cCc-----ccccHHHHHHHHHcC-------CCCCCCCCcccc
Q 039015 276 LTPDDFTCPISLEIMKDPVTL----STG-----HTYDRASILKWFRAG-------NSTCPKTGERLQ 326 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~----~cg-----htfcr~ci~~~~~~~-------~~~CP~c~~~l~ 326 (685)
.-+.+-.|=||+..=+|--.- ||- |-...+|+.+|+++. .-.||.|+....
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 345678899999888875432 542 446889999999862 237999987643
No 498
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=20.82 E-value=86 Score=23.49 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=25.4
Q ss_pred CCCccCcCccccCCCc-eeccCcccccHHHHHHH
Q 039015 278 PDDFTCPISLEIMKDP-VTLSTGHTYDRASILKW 310 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dP-v~~~cghtfcr~ci~~~ 310 (685)
++-|.|..|...+.+. ....-|..||..|..+-
T Consensus 24 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 57 (58)
T PF00412_consen 24 PECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQKR 57 (58)
T ss_dssp TTTSBETTTTCBTTTSSEEEETTEEEEHHHHHHH
T ss_pred ccccccCCCCCccCCCeeEeECCEEECHHHHhhh
Confidence 4678999999888876 45567788999887654
No 499
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=20.69 E-value=2.5e+02 Score=23.79 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHHHhcCCCChHHH
Q 039015 174 VLNDVIRILGRFEDGIRPDKSEVKRVLDYLGITKWSQC 211 (685)
Q Consensus 174 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~l~~~~~~ 211 (685)
.+++|.++|.+++ ++..++.|+..++.....++
T Consensus 4 ~rEkii~lL~e~~-----eplt~~ei~~~~~~~~~~~v 36 (97)
T COG3357 4 TREKIISLLLESD-----EPLTVAEIFELLNGEKEKEV 36 (97)
T ss_pred HHHHHHHHHHcCC-----CcchHHHHHHHHcCCchHHH
Confidence 4556666665322 34455556665555433333
No 500
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=20.44 E-value=1.2e+02 Score=23.33 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=16.2
Q ss_pred CCCCCCCCccccCCCCcccHHHHh
Q 039015 315 NSTCPKTGERLQSKELLVNLVLKR 338 (685)
Q Consensus 315 ~~~CP~c~~~l~~~~l~~n~~l~~ 338 (685)
|..||.|++.++.+...-....+.
T Consensus 8 H~HC~VCg~aIp~de~~CSe~C~e 31 (64)
T COG4068 8 HRHCVVCGKAIPPDEQVCSEECGE 31 (64)
T ss_pred CccccccCCcCCCccchHHHHHHH
Confidence 778999999988765444333333
Done!