Query 039015
Match_columns 685
No_of_seqs 455 out of 2819
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 08:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 5.4E-30 1.8E-34 274.0 23.1 270 394-669 47-341 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 8.3E-30 2.8E-34 283.2 22.4 283 380-665 3-363 (457)
3 3l6x_A Catenin delta-1; cateni 100.0 5.2E-29 1.8E-33 280.3 24.0 284 379-665 48-387 (584)
4 3nmz_A APC variant protein; pr 100.0 7.9E-29 2.7E-33 272.8 21.9 267 396-668 165-456 (458)
5 3nmz_A APC variant protein; pr 100.0 1.5E-27 5.1E-32 262.7 23.0 283 378-662 69-408 (458)
6 1xm9_A Plakophilin 1; armadill 100.0 4E-27 1.4E-31 261.6 26.7 284 378-667 43-454 (457)
7 3nmw_A APC variant protein; AR 100.0 1E-27 3.5E-32 256.4 18.3 244 379-625 73-341 (354)
8 3now_A UNC-45 protein, SD10334 99.9 1.2E-26 4.1E-31 269.3 25.0 283 377-663 419-738 (810)
9 3l6x_A Catenin delta-1; cateni 99.9 3.2E-26 1.1E-30 257.6 25.6 283 378-665 89-479 (584)
10 3now_A UNC-45 protein, SD10334 99.9 2.8E-26 9.4E-31 266.3 25.3 283 375-663 373-695 (810)
11 3ul1_B Importin subunit alpha- 99.9 1.4E-25 4.7E-30 252.8 30.1 283 378-664 99-432 (510)
12 3tpo_A Importin subunit alpha- 99.9 3.9E-25 1.3E-29 250.2 31.7 283 378-664 118-451 (529)
13 3ul1_B Importin subunit alpha- 99.9 5.8E-25 2E-29 247.6 28.2 278 380-663 58-388 (510)
14 4hxt_A De novo protein OR329; 99.9 8.6E-25 2.9E-29 221.3 24.5 238 380-621 3-244 (252)
15 4db8_A Armadillo-repeat protei 99.9 4.3E-25 1.5E-29 224.4 20.4 235 381-619 14-252 (252)
16 3tpo_A Importin subunit alpha- 99.9 4.2E-24 1.4E-28 241.7 30.4 278 380-663 77-407 (529)
17 4b8j_A Importin subunit alpha- 99.9 1.1E-23 3.8E-28 237.9 29.9 281 379-663 117-401 (528)
18 4b8j_A Importin subunit alpha- 99.9 3.1E-23 1.1E-27 234.2 32.3 278 379-662 74-358 (528)
19 4hxt_A De novo protein OR329; 99.9 1.5E-23 5.3E-28 212.0 26.4 241 421-667 2-246 (252)
20 1wa5_B Importin alpha subunit; 99.9 4.3E-22 1.5E-26 225.1 33.0 278 379-662 87-370 (530)
21 4db8_A Armadillo-repeat protei 99.9 6.3E-23 2.2E-27 208.4 22.3 236 421-662 12-251 (252)
22 2jdq_A Importin alpha-1 subuni 99.9 4.6E-22 1.6E-26 219.0 30.2 281 379-665 107-393 (450)
23 3tt9_A Plakophilin-2; cell adh 99.9 1.2E-23 4.1E-28 210.5 15.7 196 379-577 8-230 (233)
24 1wa5_B Importin alpha subunit; 99.9 5.2E-22 1.8E-26 224.4 31.2 282 379-665 173-460 (530)
25 2jdq_A Importin alpha-1 subuni 99.9 5.5E-22 1.9E-26 218.4 30.4 279 379-663 64-348 (450)
26 3tt9_A Plakophilin-2; cell adh 99.9 6E-23 2E-27 205.4 17.3 195 422-619 9-230 (233)
27 1jdh_A Beta-catenin; beta-cate 99.9 1.1E-22 3.7E-27 229.0 21.4 277 378-663 16-296 (529)
28 2z6h_A Catenin beta-1, beta-ca 99.9 2.1E-22 7.3E-27 233.2 23.5 276 379-663 14-293 (644)
29 1jdh_A Beta-catenin; beta-cate 99.9 1.1E-21 3.7E-26 220.8 26.4 280 379-663 101-386 (529)
30 2z6h_A Catenin beta-1, beta-ca 99.9 2E-21 6.8E-26 225.0 25.4 275 379-662 56-336 (644)
31 2z6g_A B-catenin; FULL-length, 99.9 2E-21 6.9E-26 229.4 24.2 274 379-664 115-391 (780)
32 4db6_A Armadillo repeat protei 99.9 3.1E-21 1.1E-25 190.3 19.9 195 380-577 13-210 (210)
33 4db6_A Armadillo repeat protei 99.9 5.1E-21 1.7E-25 188.8 20.6 198 418-619 9-210 (210)
34 2z6g_A B-catenin; FULL-length, 99.9 3.6E-21 1.2E-25 227.3 22.7 277 378-663 149-429 (780)
35 3opb_A SWI5-dependent HO expre 99.9 3.5E-21 1.2E-25 219.5 20.6 284 377-664 374-730 (778)
36 3opb_A SWI5-dependent HO expre 99.8 2.3E-19 8E-24 204.6 22.1 279 379-662 334-683 (778)
37 1xqr_A HSPBP1 protein; armadil 99.8 3.3E-18 1.1E-22 178.1 22.6 183 392-577 53-239 (296)
38 1xqr_A HSPBP1 protein; armadil 99.8 3.1E-17 1E-21 170.8 22.6 183 435-621 54-241 (296)
39 2kr4_A Ubiquitin conjugation f 99.8 5.6E-19 1.9E-23 148.3 6.9 73 276-349 10-82 (85)
40 2kre_A Ubiquitin conjugation f 99.8 9.5E-19 3.3E-23 151.3 7.4 74 275-349 24-97 (100)
41 1wgm_A Ubiquitin conjugation f 99.7 1.4E-18 4.6E-23 149.7 8.0 74 276-350 18-92 (98)
42 2f42_A STIP1 homology and U-bo 99.7 3.5E-18 1.2E-22 162.1 10.1 76 276-351 102-177 (179)
43 3htk_C E3 SUMO-protein ligase 99.7 2.4E-18 8.2E-23 170.3 8.5 215 118-346 28-251 (267)
44 1t1h_A Gspef-atpub14, armadill 99.7 4.1E-18 1.4E-22 140.9 6.1 74 276-349 4-77 (78)
45 2c2l_A CHIP, carboxy terminus 99.7 4.7E-16 1.6E-20 160.9 16.6 78 274-351 202-279 (281)
46 2yu4_A E3 SUMO-protein ligase 99.6 1.4E-16 4.9E-21 136.3 5.8 74 276-349 3-85 (94)
47 3ztg_A E3 ubiquitin-protein li 99.6 5.3E-15 1.8E-19 126.2 8.4 74 276-349 9-85 (92)
48 3grl_A General vesicular trans 99.5 5.9E-12 2E-16 140.4 25.6 278 378-661 20-341 (651)
49 3fl2_A E3 ubiquitin-protein li 99.5 3.3E-14 1.1E-18 128.4 4.9 69 277-345 49-118 (124)
50 1z6u_A NP95-like ring finger p 99.4 1.1E-13 3.6E-18 129.0 5.0 69 277-345 75-144 (150)
51 2bay_A PRE-mRNA splicing facto 99.4 1.1E-13 3.9E-18 107.7 3.2 54 280-334 3-57 (61)
52 3m62_A Ubiquitin conjugation f 99.4 8.1E-13 2.8E-17 152.4 11.4 73 276-349 887-960 (968)
53 2y43_A E3 ubiquitin-protein li 99.4 3.2E-13 1.1E-17 116.8 5.2 71 277-348 19-90 (99)
54 3lrq_A E3 ubiquitin-protein li 99.3 2.8E-13 9.4E-18 117.3 3.4 73 276-348 18-91 (100)
55 2ckl_A Polycomb group ring fin 99.3 7E-13 2.4E-17 116.5 4.7 68 276-344 11-83 (108)
56 4ayc_A E3 ubiquitin-protein li 99.3 1.8E-12 6.2E-17 119.1 7.2 64 278-344 51-114 (138)
57 2ecw_A Tripartite motif-contai 99.3 3.9E-13 1.3E-17 112.6 2.4 65 276-340 15-84 (85)
58 2egp_A Tripartite motif-contai 99.3 8.4E-14 2.9E-18 115.1 -1.8 65 276-340 8-78 (79)
59 2csy_A Zinc finger protein 183 99.3 1.5E-12 5E-17 108.2 5.2 61 276-338 11-71 (81)
60 3hct_A TNF receptor-associated 99.3 1.3E-12 4.5E-17 116.7 4.6 68 276-343 14-81 (118)
61 2ecv_A Tripartite motif-contai 99.3 5.8E-13 2E-17 111.5 1.8 65 276-340 15-84 (85)
62 3grl_A General vesicular trans 99.3 4.1E-10 1.4E-14 125.6 24.8 280 379-660 60-392 (651)
63 3l11_A E3 ubiquitin-protein li 99.3 6.4E-13 2.2E-17 118.2 1.9 69 276-344 11-86 (115)
64 2ckl_B Ubiquitin ligase protei 99.3 1.5E-12 5.2E-17 123.5 4.2 71 276-346 50-122 (165)
65 1jm7_B BARD1, BRCA1-associated 99.3 8.3E-13 2.9E-17 117.8 2.0 69 277-348 19-88 (117)
66 2djb_A Polycomb group ring fin 99.3 6.3E-12 2.1E-16 101.8 6.7 57 276-333 11-68 (72)
67 2ecy_A TNF receptor-associated 99.3 4.6E-12 1.6E-16 100.7 5.7 54 276-329 11-64 (66)
68 2yur_A Retinoblastoma-binding 99.2 6.5E-12 2.2E-16 102.3 6.0 58 276-333 11-71 (74)
69 1jm7_A BRCA1, breast cancer ty 99.2 3.4E-12 1.2E-16 112.8 3.3 69 278-346 19-89 (112)
70 3ltm_A Alpha-REP4; protein eng 99.2 6.3E-10 2.2E-14 109.2 18.7 187 379-620 19-205 (211)
71 2ysl_A Tripartite motif-contai 99.2 1.3E-11 4.5E-16 100.1 5.1 55 276-330 16-72 (73)
72 1g25_A CDK-activating kinase a 99.2 1.2E-11 4.1E-16 98.0 4.5 55 279-333 2-61 (65)
73 3ltm_A Alpha-REP4; protein eng 99.2 9.2E-10 3.1E-14 108.0 18.7 191 420-667 18-208 (211)
74 1oyz_A Hypothetical protein YI 99.2 1.3E-09 4.5E-14 111.9 19.9 225 378-659 22-247 (280)
75 2ysj_A Tripartite motif-contai 99.2 2.6E-11 8.9E-16 95.3 5.2 46 276-321 16-63 (63)
76 3ng2_A RNF4, snurf, ring finge 99.1 1.6E-11 5.5E-16 99.0 3.5 57 276-333 6-69 (71)
77 3hcs_A TNF receptor-associated 99.1 2E-11 6.8E-16 116.4 4.6 68 276-343 14-81 (170)
78 3knv_A TNF receptor-associated 99.1 6.9E-12 2.4E-16 115.3 1.2 67 276-342 27-102 (141)
79 1rmd_A RAG1; V(D)J recombinati 99.1 2.7E-11 9.2E-16 107.8 4.8 68 276-343 19-87 (116)
80 3ltj_A Alpharep-4; protein eng 99.1 2.1E-09 7.1E-14 104.6 18.6 184 379-617 14-197 (201)
81 3ltj_A Alpharep-4; protein eng 99.1 3.5E-09 1.2E-13 103.0 18.2 186 419-661 12-197 (201)
82 2d8t_A Dactylidin, ring finger 99.1 7.1E-11 2.4E-15 95.3 4.2 52 276-328 11-62 (71)
83 2ct2_A Tripartite motif protei 99.1 2E-10 6.8E-15 96.7 6.9 53 276-328 11-69 (88)
84 2ecj_A Tripartite motif-contai 99.0 1E-10 3.4E-15 90.2 4.2 46 276-321 11-58 (58)
85 2xeu_A Ring finger protein 4; 99.0 5.2E-11 1.8E-15 93.8 2.2 54 279-333 2-62 (64)
86 2ea6_A Ring finger protein 4; 99.0 1.5E-10 5E-15 92.7 4.6 51 276-327 11-68 (69)
87 2ect_A Ring finger protein 126 99.0 3.1E-10 1.1E-14 93.2 5.2 57 276-333 11-70 (78)
88 1e4u_A Transcriptional repress 99.0 4.6E-10 1.6E-14 91.9 5.4 55 276-330 7-65 (78)
89 4fdd_A Transportin-1; heat rep 98.9 1.1E-08 3.7E-13 121.9 17.1 271 380-664 129-431 (852)
90 1oyz_A Hypothetical protein YI 98.9 4.1E-08 1.4E-12 100.6 19.1 201 417-661 19-220 (280)
91 1chc_A Equine herpes virus-1 r 98.9 1E-09 3.4E-14 87.5 4.4 49 278-327 3-52 (68)
92 2kiz_A E3 ubiquitin-protein li 98.9 2.9E-09 1E-13 85.1 6.1 52 276-328 10-64 (69)
93 2ecm_A Ring finger and CHY zin 98.9 1.5E-09 5.2E-14 82.5 4.2 47 279-326 4-54 (55)
94 2ep4_A Ring finger protein 24; 98.8 3.1E-09 1.1E-13 86.2 6.2 52 276-328 11-65 (74)
95 1iym_A EL5; ring-H2 finger, ub 98.8 1.3E-09 4.5E-14 82.9 3.5 49 277-326 2-54 (55)
96 4fdd_A Transportin-1; heat rep 98.8 2.3E-08 7.9E-13 119.0 15.7 273 379-661 215-511 (852)
97 2ecn_A Ring finger protein 141 98.8 6.9E-10 2.3E-14 89.1 1.2 52 276-329 11-62 (70)
98 1bor_A Transcription factor PM 98.8 1.2E-09 4.1E-14 83.5 2.3 47 278-328 4-50 (56)
99 1b3u_A Protein (protein phosph 98.8 2.6E-07 8.8E-12 104.4 22.6 264 379-660 164-429 (588)
100 4ap4_A E3 ubiquitin ligase RNF 98.8 1.4E-09 4.7E-14 98.8 2.8 55 278-333 5-66 (133)
101 2l0b_A E3 ubiquitin-protein li 98.8 2.4E-09 8.3E-14 90.7 4.1 51 276-327 36-89 (91)
102 1b3u_A Protein (protein phosph 98.8 1.9E-07 6.5E-12 105.5 20.5 264 380-661 88-352 (588)
103 1x4j_A Ring finger protein 38; 98.8 2.7E-09 9.4E-14 86.8 3.6 50 277-327 20-72 (75)
104 4gmo_A Putative uncharacterize 98.8 4.9E-08 1.7E-12 113.3 14.8 193 422-618 35-258 (684)
105 1ibr_B P95, importin beta-1 su 98.8 8.7E-08 3E-12 104.8 16.0 277 380-666 129-441 (462)
106 1v87_A Deltex protein 2; ring- 98.7 8.2E-09 2.8E-13 91.3 4.9 49 279-327 24-94 (114)
107 4gmo_A Putative uncharacterize 98.7 9.7E-08 3.3E-12 110.8 14.3 195 461-660 33-256 (684)
108 2vgl_B AP-2 complex subunit be 98.7 2E-06 6.8E-11 98.1 24.3 263 379-660 121-417 (591)
109 4ic3_A E3 ubiquitin-protein li 98.6 5.9E-09 2E-13 84.6 1.3 45 278-327 22-67 (74)
110 2y1n_A E3 ubiquitin-protein li 98.6 2.1E-08 7.2E-13 105.9 5.0 50 279-328 331-380 (389)
111 4ap4_A E3 ubiquitin ligase RNF 98.6 1.2E-08 4E-13 92.7 1.8 56 277-333 69-131 (133)
112 2ecl_A Ring-box protein 2; RNF 98.5 5.9E-08 2E-12 80.1 3.7 48 279-327 14-76 (81)
113 2vje_A E3 ubiquitin-protein li 98.5 7.6E-08 2.6E-12 75.5 4.1 48 278-326 6-56 (64)
114 2ecg_A Baculoviral IAP repeat- 98.5 4E-08 1.4E-12 79.9 2.3 45 278-327 23-68 (75)
115 2vgl_B AP-2 complex subunit be 98.4 1.8E-06 6.2E-11 98.4 15.4 252 380-660 14-266 (591)
116 1wim_A KIAA0161 protein; ring 98.4 5E-08 1.7E-12 83.0 1.5 66 279-345 4-83 (94)
117 2vje_B MDM4 protein; proto-onc 98.4 1.5E-07 5.1E-12 73.6 3.6 48 279-327 6-56 (63)
118 3dpl_R Ring-box protein 1; ubi 98.4 2.7E-07 9.1E-12 80.0 4.6 47 279-326 36-100 (106)
119 1qgr_A Protein (importin beta 98.3 1.9E-05 6.4E-10 93.7 22.0 275 380-665 129-440 (876)
120 2bpt_A Importin beta-1 subunit 98.3 3.5E-06 1.2E-10 99.7 14.0 273 379-663 369-669 (861)
121 1w63_A Adapter-related protein 98.3 1.6E-05 5.4E-10 91.1 18.4 217 378-619 106-343 (618)
122 1w63_A Adapter-related protein 98.3 2.5E-05 8.4E-10 89.5 20.0 218 378-619 141-380 (618)
123 3b2a_A TON_1937, putative unch 98.3 1.7E-05 5.8E-10 77.0 15.4 189 378-579 32-221 (265)
124 1qgr_A Protein (importin beta 98.3 1.4E-05 4.8E-10 94.7 18.3 272 379-664 172-481 (876)
125 2yho_A E3 ubiquitin-protein li 98.2 1.9E-07 6.5E-12 76.6 0.7 45 279-328 17-62 (79)
126 1u6g_C TIP120 protein, CAND1; 98.2 2.9E-06 9.9E-11 105.0 11.7 269 380-663 7-285 (1230)
127 2bpt_A Importin beta-1 subunit 98.2 2.8E-05 9.4E-10 92.0 19.7 275 380-664 135-442 (861)
128 1ibr_B P95, importin beta-1 su 98.2 7.7E-06 2.6E-10 89.2 13.3 269 382-662 93-395 (462)
129 2ea5_A Cell growth regulator w 98.1 2.3E-06 7.9E-11 67.8 5.4 46 277-327 12-58 (68)
130 2qk2_A LP04448P; mini spindles 98.1 2.4E-05 8.2E-10 78.2 14.2 182 384-577 20-206 (242)
131 3t6p_A Baculoviral IAP repeat- 98.1 4.4E-07 1.5E-11 95.4 1.1 47 276-327 291-338 (345)
132 2d8s_A Cellular modulator of i 98.0 5E-06 1.7E-10 68.0 5.4 53 276-328 11-71 (80)
133 4a0k_B E3 ubiquitin-protein li 98.0 1.1E-06 3.7E-11 77.3 0.2 46 280-326 48-111 (117)
134 1u6g_C TIP120 protein, CAND1; 98.0 1.7E-05 6E-10 98.0 11.1 230 379-622 48-288 (1230)
135 1te4_A Conserved protein MTH18 97.9 3.2E-06 1.1E-10 76.2 1.5 120 420-573 11-130 (131)
136 1te4_A Conserved protein MTH18 97.9 2.2E-06 7.4E-11 77.3 0.3 119 380-532 13-131 (131)
137 2vgl_A Adaptor protein complex 97.8 0.0019 6.4E-08 73.8 24.1 254 378-659 145-430 (621)
138 2vgl_A Adaptor protein complex 97.8 0.0011 3.7E-08 75.8 21.8 256 378-661 110-397 (621)
139 2qk1_A Protein STU2; STU2P, XM 97.8 7E-05 2.4E-09 75.4 10.5 189 385-576 22-220 (249)
140 2qk2_A LP04448P; mini spindles 97.8 0.00025 8.7E-09 70.6 13.5 185 466-664 19-207 (242)
141 3b2a_A TON_1937, putative unch 97.7 0.00059 2E-08 66.3 14.3 223 422-661 34-260 (265)
142 3dad_A FH1/FH2 domain-containi 97.6 0.00074 2.5E-08 69.6 15.0 153 380-534 119-286 (339)
143 4ady_A RPN2, 26S proteasome re 97.5 0.0068 2.3E-07 71.1 21.5 235 380-660 430-674 (963)
144 3dad_A FH1/FH2 domain-containi 97.4 0.0043 1.5E-07 63.9 17.1 153 508-662 121-286 (339)
145 2ct0_A Non-SMC element 1 homol 97.4 0.00017 6E-09 57.6 5.1 50 278-327 13-64 (74)
146 2qk1_A Protein STU2; STU2P, XM 97.4 0.0014 4.9E-08 65.7 12.9 190 467-664 21-222 (249)
147 2iw3_A Elongation factor 3A; a 97.3 0.014 4.7E-07 69.2 21.6 267 380-665 55-327 (986)
148 1vyx_A ORF K3, K3RING; zinc-bi 97.2 0.00036 1.2E-08 53.5 4.3 48 279-326 5-58 (60)
149 3vk6_A E3 ubiquitin-protein li 97.1 0.0003 1E-08 58.6 4.0 46 282-327 3-49 (101)
150 3tjz_B Coatomer subunit gamma; 97.1 0.0051 1.7E-07 64.8 14.2 239 379-654 104-345 (355)
151 1ho8_A Vacuolar ATP synthase s 97.1 0.016 5.5E-07 62.6 17.6 232 383-618 171-476 (480)
152 1ho8_A Vacuolar ATP synthase s 97.1 0.032 1.1E-06 60.3 19.9 235 425-662 171-476 (480)
153 2db0_A 253AA long hypothetical 97.0 0.14 4.8E-06 47.9 21.0 212 421-661 32-245 (253)
154 3k1l_B Fancl; UBC, ring, RWD, 96.9 0.00022 7.6E-09 73.0 0.9 50 278-327 306-373 (381)
155 3tjz_B Coatomer subunit gamma; 96.6 0.0047 1.6E-07 65.0 9.2 210 379-615 139-350 (355)
156 2iw3_A Elongation factor 3A; a 96.5 0.031 1.1E-06 66.2 16.0 259 381-663 16-281 (986)
157 4ady_A RPN2, 26S proteasome re 96.4 0.96 3.3E-05 53.2 27.1 206 380-622 473-680 (963)
158 4ffb_C Protein STU2; tubulin f 96.1 0.11 3.9E-06 52.4 15.9 185 384-577 14-213 (278)
159 2fv2_A RCD1 required for cell 96.1 0.16 5.5E-06 50.1 15.8 231 381-616 5-266 (268)
160 3oc3_A Helicase MOT1, MOT1; re 95.8 0.049 1.7E-06 59.4 11.3 245 380-658 175-432 (800)
161 1wa5_C Importin alpha RE-expor 94.8 1 3.5E-05 53.8 20.1 259 394-663 376-671 (960)
162 2fv2_A RCD1 required for cell 94.7 0.2 6.7E-06 49.5 11.1 148 395-544 72-234 (268)
163 3ebb_A Phospholipase A2-activa 94.7 0.24 8.3E-06 50.8 12.4 170 381-553 105-282 (304)
164 2jun_A Midline-1; B-BOX, TRIM, 94.6 0.014 4.7E-07 49.6 2.2 34 279-312 2-38 (101)
165 3ebb_A Phospholipase A2-activa 94.5 0.94 3.2E-05 46.4 16.3 185 423-610 105-298 (304)
166 2of3_A ZYG-9; multifunctional 94.5 0.48 1.6E-05 47.5 13.7 179 383-576 50-236 (266)
167 3i2d_A E3 SUMO-protein ligase 94.5 0.033 1.1E-06 58.0 5.2 64 279-342 248-315 (371)
168 1upk_A MO25 protein; transfera 94.3 4.6 0.00016 41.5 20.5 239 416-663 73-333 (341)
169 1upk_A MO25 protein; transfera 94.2 1.1 3.8E-05 46.0 15.8 223 380-619 79-312 (341)
170 4ffb_C Protein STU2; tubulin f 94.2 0.16 5.6E-06 51.2 9.9 187 467-664 14-214 (278)
171 3nw0_A Non-structural maintena 93.9 0.042 1.4E-06 54.4 4.3 49 280-328 180-230 (238)
172 4fo9_A E3 SUMO-protein ligase 93.7 0.062 2.1E-06 55.8 5.4 65 278-342 213-281 (360)
173 2db0_A 253AA long hypothetical 93.7 4.6 0.00016 37.9 23.6 215 377-618 30-246 (253)
174 3eg5_B Protein diaphanous homo 92.5 3.6 0.00012 43.5 17.1 177 384-564 71-282 (383)
175 2f31_A Diaphanous protein homo 92.4 2.4 8.1E-05 41.5 14.5 176 385-564 6-216 (233)
176 2f31_A Diaphanous protein homo 90.9 4.8 0.00017 39.2 15.0 145 460-604 41-214 (233)
177 1lrv_A LRV, leucine-rich repea 90.7 0.66 2.2E-05 45.9 8.4 171 411-655 64-239 (244)
178 1wa5_C Importin alpha RE-expor 90.6 5.6 0.00019 47.3 18.1 220 390-617 416-669 (960)
179 2of3_A ZYG-9; multifunctional 90.5 1.4 4.8E-05 44.1 10.7 141 476-628 100-246 (266)
180 3u0r_A Apoptosis inhibitor 5; 89.8 10 0.00035 40.9 16.9 123 389-531 38-160 (507)
181 2bnx_A Diaphanous protein homo 89.1 6.2 0.00021 41.7 15.0 179 384-566 9-222 (386)
182 1lrv_A LRV, leucine-rich repea 88.7 0.25 8.4E-06 49.0 3.5 66 384-485 79-144 (244)
183 3eg5_B Protein diaphanous homo 87.9 12 0.00041 39.4 16.2 143 456-600 104-276 (383)
184 3oc3_A Helicase MOT1, MOT1; re 85.4 1.1 3.8E-05 49.1 6.3 184 395-613 244-431 (800)
185 3u0r_A Apoptosis inhibitor 5; 85.4 4.8 0.00016 43.3 11.2 121 472-615 38-160 (507)
186 3c2g_A SYS-1 protein; beta-cat 83.4 11 0.00038 38.7 12.2 110 444-556 265-377 (619)
187 1weo_A Cellulose synthase, cat 83.3 3 0.0001 33.7 6.4 48 279-326 15-69 (93)
188 2bnx_A Diaphanous protein homo 82.6 26 0.00088 36.9 15.7 144 461-605 46-219 (386)
189 2x1g_F Cadmus; transport prote 79.6 70 0.0024 37.6 20.0 176 476-663 477-664 (971)
190 2x1g_F Cadmus; transport prote 78.3 22 0.00075 42.1 15.0 208 422-645 349-596 (971)
191 2x19_B Importin-13; nuclear tr 76.8 22 0.00074 42.0 14.3 155 389-555 459-621 (963)
192 3c2g_A SYS-1 protein; beta-cat 74.3 30 0.001 35.6 12.0 116 395-515 259-377 (619)
193 3m1i_C Exportin-1; heat repeat 73.8 41 0.0014 40.2 15.8 219 381-619 18-264 (1049)
194 2x19_B Importin-13; nuclear tr 73.2 1.5E+02 0.005 34.7 21.6 217 381-619 26-269 (963)
195 2cs3_A Protein C14ORF4, MY039 72.9 7.2 0.00025 30.8 5.6 45 276-320 11-63 (93)
196 4hat_C Exportin-1; heat repeat 71.4 29 0.00099 41.5 13.4 143 391-537 465-621 (1023)
197 4hat_C Exportin-1; heat repeat 71.2 44 0.0015 39.9 15.0 221 380-619 17-264 (1023)
198 2ko5_A Ring finger protein Z; 70.1 2.2 7.5E-05 34.9 2.2 50 277-328 25-74 (99)
199 1mhq_A ADP-ribosylation factor 68.2 12 0.0004 33.7 7.0 72 378-449 37-115 (148)
200 1x5b_A Signal transducing adap 67.7 9.5 0.00033 35.0 6.4 72 378-449 51-124 (163)
201 1vdy_A Hypothetical protein (R 62.5 12 0.00041 33.3 5.8 72 591-663 52-131 (140)
202 1juq_A ADP-ribosylation factor 62.2 12 0.0004 34.6 5.9 72 378-449 49-127 (171)
203 3ldz_A STAM-1, signal transduc 59.1 15 0.00053 32.6 6.0 72 378-449 41-113 (140)
204 3ldz_A STAM-1, signal transduc 58.8 22 0.00074 31.6 6.9 73 590-664 44-116 (140)
205 3l9t_A Putative uncharacterize 58.2 84 0.0029 30.5 11.3 142 424-587 74-219 (240)
206 3gae_A Protein DOA1; UFD3, CDC 56.1 31 0.001 34.0 8.1 130 395-535 70-218 (253)
207 3a6p_A Exportin-5; exportin-5, 55.7 1.3E+02 0.0044 36.6 15.3 220 381-620 13-278 (1204)
208 3gjx_A Exportin-1; transport, 55.5 1.3E+02 0.0043 36.2 14.7 218 380-619 29-276 (1073)
209 1m3v_A FLIN4, fusion of the LI 55.1 6.9 0.00024 33.8 2.9 52 278-330 30-84 (122)
210 1lsh_A Lipovitellin (LV-1N, LV 54.7 1.9E+02 0.0064 34.6 16.2 171 423-622 393-580 (1056)
211 3mjh_B Early endosome antigen 53.1 3.1 0.00011 27.5 0.2 15 280-294 5-19 (34)
212 1x5b_A Signal transducing adap 52.6 38 0.0013 30.8 7.6 72 590-663 54-126 (163)
213 3l9t_A Putative uncharacterize 52.2 80 0.0027 30.6 10.1 142 381-544 72-218 (240)
214 3g2s_A C-terminal fragment of 51.5 31 0.0011 31.0 6.7 71 379-449 48-125 (149)
215 3ibv_A Exportin-T; karyopherin 51.4 3.6E+02 0.012 31.8 19.0 212 391-621 20-263 (980)
216 2kkx_A Uncharacterized protein 49.8 17 0.00057 30.1 4.0 52 276-328 23-80 (102)
217 2o35_A Hypothetical protein DU 49.0 6.3 0.00022 32.5 1.4 13 301-313 42-54 (105)
218 3qml_C Protein SLS1, nucleotid 48.8 1.5E+02 0.0052 29.8 11.7 135 434-575 41-188 (315)
219 3fyb_A Protein of unknown func 48.3 6.6 0.00023 32.3 1.4 13 301-313 41-53 (104)
220 3pst_A Protein DOA1; protein d 46.5 74 0.0025 33.7 9.6 129 395-534 242-389 (425)
221 3zyq_A Hepatocyte growth facto 45.9 22 0.00076 34.3 5.2 71 379-449 45-117 (226)
222 1mhq_A ADP-ribosylation factor 45.8 43 0.0015 29.9 6.7 72 590-663 40-117 (148)
223 3m1i_C Exportin-1; heat repeat 44.5 1.1E+02 0.0038 36.4 12.2 139 391-533 465-617 (1049)
224 2k5c_A Uncharacterized protein 44.0 3.8 0.00013 32.4 -0.6 55 281-335 9-71 (95)
225 3l3f_X Protein DOA1, DOA1/UFD3 43.3 70 0.0024 33.1 8.7 129 396-534 180-326 (362)
226 1juq_A ADP-ribosylation factor 42.6 52 0.0018 30.2 6.9 72 590-663 52-129 (171)
227 1dvp_A HRS, hepatocyte growth 42.3 31 0.0011 33.0 5.6 71 379-449 42-114 (220)
228 3lay_A Zinc resistance-associa 41.4 76 0.0026 29.2 7.7 55 143-201 66-120 (175)
229 3g2s_A C-terminal fragment of 40.4 69 0.0024 28.6 7.2 72 590-663 50-127 (149)
230 2xjy_A Rhombotin-2; oncoprotei 40.4 19 0.00067 31.1 3.5 49 278-327 27-78 (131)
231 1lsh_A Lipovitellin (LV-1N, LV 40.1 2.8E+02 0.0095 33.1 14.6 130 380-537 441-579 (1056)
232 2jne_A Hypothetical protein YF 40.1 8.2 0.00028 31.7 0.8 41 280-326 32-72 (101)
233 2xqn_T Testin, TESS; metal-bin 39.2 14 0.00049 31.8 2.3 47 278-327 28-75 (126)
234 2kw6_A Cyclin-dependent kinase 38.3 12 0.00042 28.1 1.4 42 64-105 15-56 (65)
235 2jvx_A NF-kappa-B essential mo 36.7 9.7 0.00033 23.9 0.6 15 279-293 2-16 (28)
236 1elk_A Target of MYB1; superhe 36.1 63 0.0021 29.1 6.3 72 378-449 52-129 (157)
237 1rut_X Flinc4, fusion protein 35.5 9.6 0.00033 35.7 0.6 49 278-327 30-81 (188)
238 2rgt_A Fusion of LIM/homeobox 33.5 36 0.0012 31.0 4.2 48 278-328 31-78 (169)
239 3zyq_A Hepatocyte growth facto 32.9 68 0.0023 30.8 6.3 73 590-664 47-120 (226)
240 2jtn_A LIM domain-binding prot 32.8 29 0.001 32.0 3.5 48 278-328 85-132 (182)
241 3pwf_A Rubrerythrin; non heme 32.2 51 0.0018 30.2 5.0 29 278-326 136-164 (170)
242 3qml_C Protein SLS1, nucleotid 31.8 3.2E+02 0.011 27.5 11.0 145 382-533 25-188 (315)
243 1x61_A Thyroid receptor intera 31.8 57 0.002 24.6 4.6 36 278-313 31-67 (72)
244 4abx_A DNA repair protein RECN 30.9 3E+02 0.01 24.9 15.8 73 56-134 8-82 (175)
245 1wil_A KIAA1045 protein; ring 30.5 59 0.002 26.0 4.2 36 275-310 10-47 (89)
246 3a6p_A Exportin-5; exportin-5, 29.7 2.8E+02 0.0096 33.6 12.4 178 389-577 57-277 (1204)
247 2yru_A Steroid receptor RNA ac 29.1 1.3E+02 0.0045 25.7 6.7 62 28-96 13-74 (118)
248 6rxn_A Rubredoxin; electron tr 28.8 18 0.00062 25.5 1.0 13 276-288 26-38 (46)
249 1dvp_A HRS, hepatocyte growth 28.4 1.2E+02 0.004 28.9 7.1 72 590-663 44-116 (220)
250 3gjx_A Exportin-1; transport, 28.3 5.5E+02 0.019 30.6 14.3 176 390-577 72-276 (1073)
251 2m1l_A Cyclin-dependent kinase 27.2 25 0.00086 26.8 1.5 41 65-105 20-60 (69)
252 1iml_A CRIP, cysteine rich int 27.2 41 0.0014 25.9 3.0 46 278-326 25-72 (76)
253 1joc_A EEA1, early endosomal a 27.2 79 0.0027 27.3 5.1 27 281-307 70-100 (125)
254 2lri_C Autoimmune regulator; Z 27.0 39 0.0013 25.7 2.6 45 278-324 10-59 (66)
255 2d8x_A Protein pinch; LIM doma 24.9 53 0.0018 24.7 3.2 36 278-313 29-65 (70)
256 2fiy_A Protein FDHE homolog; F 24.8 6.4 0.00022 40.1 -2.8 46 278-324 180-231 (309)
257 1e8j_A Rubredoxin; iron-sulfur 24.4 28 0.00095 25.2 1.3 14 276-289 32-45 (52)
258 1z60_A TFIIH basal transcripti 24.2 41 0.0014 25.1 2.2 39 282-321 17-58 (59)
259 4rxn_A Rubredoxin; electron tr 24.0 25 0.00085 25.8 1.0 14 276-289 32-45 (54)
260 3pst_A Protein DOA1; protein d 23.3 5.3E+02 0.018 27.1 11.4 130 438-577 243-390 (425)
261 2lbm_A Transcriptional regulat 23.0 51 0.0017 29.3 3.0 42 279-322 62-115 (142)
262 2jrp_A Putative cytoplasmic pr 22.9 4.9 0.00017 32.1 -3.2 40 281-326 3-42 (81)
263 2cup_A Skeletal muscle LIM-pro 22.9 27 0.00093 28.6 1.2 47 278-327 31-78 (101)
264 2l4z_A DNA endonuclease RBBP8, 22.1 48 0.0016 28.5 2.7 39 279-326 60-99 (123)
265 3uk3_C Zinc finger protein 217 22.0 44 0.0015 23.3 2.1 37 280-327 4-44 (57)
266 1wen_A Inhibitor of growth fam 21.9 71 0.0024 24.6 3.3 47 276-325 12-66 (71)
267 3gae_A Protein DOA1; UFD3, CDC 21.6 96 0.0033 30.3 5.1 111 389-502 100-227 (253)
268 3ibv_A Exportin-T; karyopherin 21.6 3.8E+02 0.013 31.6 11.2 67 389-459 203-272 (980)
269 1elk_A Target of MYB1; superhe 21.1 2.2E+02 0.0076 25.4 7.1 72 590-663 55-131 (157)
270 3ttc_A HYPF, transcriptional r 21.0 36 0.0012 38.4 2.0 51 275-325 12-99 (657)
271 2kn9_A Rubredoxin; metalloprot 20.9 34 0.0012 27.3 1.3 14 276-289 56-69 (81)
272 1yk4_A Rubredoxin, RD; electro 20.7 32 0.0011 24.9 1.0 13 276-288 31-43 (52)
273 2d8x_A Protein pinch; LIM doma 20.7 50 0.0017 24.8 2.2 41 281-330 6-46 (70)
274 3vhs_A ATPase wrnip1; zinc fin 20.6 21 0.00073 21.5 0.0 12 280-291 6-17 (29)
275 2dar_A PDZ and LIM domain prot 20.4 68 0.0023 25.5 3.1 38 281-327 26-63 (90)
276 2v3b_B Rubredoxin 2, rubredoxi 20.4 32 0.0011 25.2 0.9 14 276-289 32-45 (55)
277 2dar_A PDZ and LIM domain prot 20.2 55 0.0019 26.1 2.5 35 278-312 49-84 (90)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=5.4e-30 Score=273.99 Aligned_cols=270 Identities=17% Similarity=0.164 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-----------CCHHHHHHHHHHhhccccCcc-hhHHHHh-
Q 039015 394 EEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-----------KDSSTQENAIAALLNLSKHCK-SKSMVVE- 460 (685)
Q Consensus 394 ~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-----------~~~~~~~~A~~aL~nLs~~~~-~k~~i~~- 460 (685)
+.+.+|++.|.+++. ++++|..+++.|+++.|+.+|.+ .++.+|.+|+++|.||+.+++ +|..|..
T Consensus 47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 445689999999997 68999999999999999999952 246799999999999998775 7887764
Q ss_pred cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc--hhHHHHhhcCCCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcC-CC
Q 039015 461 SGGLDFIVDMVKKGLKVEARQHAAATLFYIASI--EEYRKLIGENPEAIPALVDMV-RDGTDRSKKNALVAIFGLLM-HS 536 (685)
Q Consensus 461 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~ 536 (685)
.|+|+.|+.+|+++ +.++++.|+++|.+|+.. +++|..|.+ .|+||.|+++| +++++..++.|+.+|+||+. .+
T Consensus 126 ~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 126 KGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred CCcHHHHHHHHCCC-CHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 56799999999998 999999999999999985 579999998 99999999975 66788999999999999998 55
Q ss_pred CcHHHHH-hcCChHHHHHHhccCCCh---hHHHHHHHHHHHHhc----ChhcHHHHHhcCChHHHHHHhhcCCChhHHHH
Q 039015 537 GNHWRFL-AAGAVPLLLNLLTSSDSE---ELITDSLAVLATLAE----KLDGTIAILHHGALDMIMKILDSCTSRAGKEY 608 (685)
Q Consensus 537 ~n~~~iv-~~G~v~~Lv~lL~~~~~~---~~~~~al~~L~~La~----~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~ 608 (685)
+|+..++ ..|+++.|+++|....+. .+++.|+++|.||+. +++++..+.+.|+++.|+++|+++ +..++++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 7898888 799999999999543332 589999999999995 899999999999999999999998 9999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcccCC
Q 039015 609 CVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHSS 669 (685)
Q Consensus 609 a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~~ 669 (685)
|+++|++|+..+ ++.++.+.+ .|+++.|+.|+.++++++++.|.+.|..|....+..|.
T Consensus 283 A~~aL~nLa~~~-~~~~~~i~~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 283 ACGTLWNLSARN-PKDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHHHTSSC-HHHHHHHHH-TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHhCCC-HHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHh
Confidence 999999999765 444556666 89999999999999999999999999999987665554
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=8.3e-30 Score=283.23 Aligned_cols=283 Identities=18% Similarity=0.228 Sum_probs=243.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSMV 458 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~i 458 (685)
.++.|++.|++++++.|..|+..|++++.+++.++..+++.|+||.|+.+|.++++.++..|+++|.||+.+ +++|..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 478999999999999999999999999987878898999999999999999999999999999999999987 7899999
Q ss_pred HhcCcHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc--------cC--------CHHH
Q 039015 459 VESGGLDFIVDMVK-KGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR--------DG--------TDRS 521 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--------~~--------~~~~ 521 (685)
++.|+|+.|+++|+ ++ +.++++.|+++|+||+.++++|..|.+ |++|.|+++|. ++ ++..
T Consensus 83 ~~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 99999999999999 77 899999999999999999999998986 99999999993 22 3455
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHhc-CChHHHHHHhccC-----CChhHHHHHHHHHHHHhcCh-----------------
Q 039015 522 KKNALVAIFGLLMHSGNHWRFLAA-GAVPLLLNLLTSS-----DSEELITDSLAVLATLAEKL----------------- 578 (685)
Q Consensus 522 ~~~A~~aL~nLs~~~~n~~~iv~~-G~v~~Lv~lL~~~-----~~~~~~~~al~~L~~La~~~----------------- 578 (685)
.++|+++|+|||.+++++..+++. |+++.|+.+|.+. .+..+.+.|+.+|.||+...
T Consensus 160 ~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 669999999999988899999998 9999999999631 35568899999999997321
Q ss_pred ----------------------------------hcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHH-
Q 039015 579 ----------------------------------DGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGAN- 623 (685)
Q Consensus 579 ----------------------------------~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~- 623 (685)
.+...+.+.|+++.|+.+|..+.++.+++.|+++|.+||.++++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 122334455668889998887657999999999999999875432
Q ss_pred --HHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015 624 --VVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE 665 (685)
Q Consensus 624 --~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~ 665 (685)
..+.+....|++|.|+.|+.+++.++++.|.++|+.+....+
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 213344347999999999999999999999999999987543
No 3
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=5.2e-29 Score=280.25 Aligned_cols=284 Identities=17% Similarity=0.185 Sum_probs=241.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC--cchhH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH--CKSKS 456 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~--~~~k~ 456 (685)
..|+.||+.|.+++++.|..|++.|++++..+.++|..+++.|+||.||.+|.+++..+|+.|+++|.||+.+ ++||.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3589999999999999999999999999988899999999999999999999999999999999999999984 78999
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc------------------cCC
Q 039015 457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR------------------DGT 518 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~------------------~~~ 518 (685)
.|++.|+|+.|+.+|+++.+.+++++|+++|++||.++++|..|.. |+||+|++++. ..+
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhccccccccccccccccccccc
Confidence 9999999999999999743789999999999999999999999996 46999999872 124
Q ss_pred HHHHHHHHHHHHHhcCCCC-cHHHHHhc-CChHHHHHHhcc-----CCChhHHHHHHHHHHHHhcChh------------
Q 039015 519 DRSKKNALVAIFGLLMHSG-NHWRFLAA-GAVPLLLNLLTS-----SDSEELITDSLAVLATLAEKLD------------ 579 (685)
Q Consensus 519 ~~~~~~A~~aL~nLs~~~~-n~~~iv~~-G~v~~Lv~lL~~-----~~~~~~~~~al~~L~~La~~~~------------ 579 (685)
+.++++|+++|+||+.+.+ ++..+++. |+++.|+.+|.+ +.+...++.|+++|.||+...+
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 6889999999999998775 58889885 557899999953 2456789999999999987521
Q ss_pred --------------cHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcH---HHHHHHHhcCCcHHHHHHHH
Q 039015 580 --------------GTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGA---NVVALLVKSPSLMGSLYSLL 642 (685)
Q Consensus 580 --------------~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~---~~~~~l~~~~g~i~~L~~Ll 642 (685)
|...+.+.++++.|+.+|+.+.++.++++|+++|++||.+... ..+..+.+ .|++|.|+.|+
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~-~~glp~Lv~LL 364 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ-EKALSAIADLL 364 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS-HHHHHHHHHGG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH-cCcHHHHHHHH
Confidence 1112223334567888887655899999999999999987533 22333333 68899999999
Q ss_pred hcCChHHHHHHHHHHHHHHHhhc
Q 039015 643 SQGSSRASKKASALIRILHEFYE 665 (685)
Q Consensus 643 ~~g~~~~k~~A~~lL~~l~~~~~ 665 (685)
.++++.+++.|.++|+.|.....
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCS
T ss_pred cCCCHHHHHHHHHHHHHHhCChh
Confidence 99999999999999999988643
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=7.9e-29 Score=272.79 Aligned_cols=267 Identities=18% Similarity=0.158 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-----------CCHHHHHHHHHHhhccccCcc-hhHHHH-hcC
Q 039015 396 KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-----------KDSSTQENAIAALLNLSKHCK-SKSMVV-ESG 462 (685)
Q Consensus 396 ~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-----------~~~~~~~~A~~aL~nLs~~~~-~k~~i~-~~g 462 (685)
+.+|++.|.+++. ++++|..|.+.|++++|+.+|.. .++.++.+|+++|.||+.+++ +|..+. ..|
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 3489999999986 68999999999999999999952 346799999999999998875 677775 467
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc--hhHHHHhhcCCCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcC-CCCc
Q 039015 463 GLDFIVDMVKKGLKVEARQHAAATLFYIASI--EEYRKLIGENPEAIPALVDMV-RDGTDRSKKNALVAIFGLLM-HSGN 538 (685)
Q Consensus 463 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~n 538 (685)
+|+.|+.+|+++ +.+++..|+++|.+|+.. +++|..|.+ .|+||.||++| .++++..++.|+.+|+||+. +++|
T Consensus 244 aIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n 321 (458)
T 3nmz_A 244 CMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321 (458)
T ss_dssp HHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred cHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH
Confidence 799999999998 999999999999999984 579999998 99999999975 56788999999999999998 6689
Q ss_pred HHHHH-hcCChHHHHHHhccCCCh---hHHHHHHHHHHHHhc----ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHH
Q 039015 539 HWRFL-AAGAVPLLLNLLTSSDSE---ELITDSLAVLATLAE----KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCV 610 (685)
Q Consensus 539 ~~~iv-~~G~v~~Lv~lL~~~~~~---~~~~~al~~L~~La~----~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~ 610 (685)
+..++ ..|+++.|+++|....+. .+++.|+++|.||+. +++++..+.+.|+++.|+.+|+++ +..++++|+
T Consensus 322 k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~ 400 (458)
T 3nmz_A 322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNAC 400 (458)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHH
Confidence 99988 799999999999543332 489999999999984 889999999999999999999998 999999999
Q ss_pred HHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcccC
Q 039015 611 SLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYERHS 668 (685)
Q Consensus 611 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~ 668 (685)
++|++|+..++ +.++.+.+ .|+++.|+.|+.++++++++.|.+.|+.|....+..|
T Consensus 401 ~aL~nLa~~~~-~~~~~i~~-~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 401 GTLWNLSARNP-KDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HHHHHHHSSCH-HHHHHHHH-HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHHHHHHcCCH-HHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 99999997654 44556665 7999999999999999999999999999988765555
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=262.65 Aligned_cols=283 Identities=15% Similarity=0.155 Sum_probs=242.5
Q ss_pred hHHHHHHHHHhcC------------CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCH----------HHHHHhhcCCC-
Q 039015 378 KLLANFISDRLLE------------GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCI----------PSLLKLLSSKD- 434 (685)
Q Consensus 378 ~~~i~~Lv~~L~s------------~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i----------p~Lv~lL~s~~- 434 (685)
.+.++.|++.|+. ++++.+.+|+++|.+++.++++......+.|++ +.+++++.+..
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 4678999999975 347999999999999999999999999999998 77777787642
Q ss_pred -HH-----HHH-------HHHHHhhccccCcchhHHHHhcCcHHHHHHHhcC----------CCCHHHHHHHHHHHHHhc
Q 039015 435 -SS-----TQE-------NAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKK----------GLKVEARQHAAATLFYIA 491 (685)
Q Consensus 435 -~~-----~~~-------~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~----------~~~~e~~~~Aa~~L~~Ls 491 (685)
.+ +++ .|+++|.|++.++++|..|++.|++++|+.+|.. ..+.+.+.+|+++|.||+
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 22 444 9999999999999999999999999999999952 114678999999999999
Q ss_pred Cchh-HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCcHHHHHhcCChHHHHHHhccCCChhHHHHHH
Q 039015 492 SIEE-YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH--SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSL 568 (685)
Q Consensus 492 ~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al 568 (685)
..++ ++..+....|+||.|+.+|.+++++++.+|+++|.||+.. ++++..++++|+|+.|+++|..+.+..+++.|+
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 8774 7777765357799999999999999999999999999985 458999999999999999875666788999999
Q ss_pred HHHHHHhc-ChhcHHHHH-hcCChHHHHHHhhcCCCh----hHHHHHHHHHHHHhcc--CcHHHHHHHHhcCCcHHHHHH
Q 039015 569 AVLATLAE-KLDGTIAIL-HHGALDMIMKILDSCTSR----AGKEYCVSLLLALCIN--GGANVVALLVKSPSLMGSLYS 640 (685)
Q Consensus 569 ~~L~~La~-~~~~~~~i~-~~g~v~~Lv~lL~~~~s~----~~~e~a~~~L~~L~~~--~~~~~~~~l~~~~g~i~~L~~ 640 (685)
.+|+||+. +++++..|. ..|+++.|+++|..+ ++ .+++.|+++|.+|+.. +.+..++.+.+ .|+++.|+.
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~ 386 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCC-CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCC-CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHH
Confidence 99999999 778899988 778899999999876 44 4899999999999972 22555667776 899999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHH
Q 039015 641 LLSQGSSRASKKASALIRILHE 662 (685)
Q Consensus 641 Ll~~g~~~~k~~A~~lL~~l~~ 662 (685)
++.+++..+++.|.+.|..|..
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHcCCChHHHHHHHHHHHHHHc
Confidence 9999999999999999999974
No 6
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=4e-27 Score=261.62 Aligned_cols=284 Identities=17% Similarity=0.134 Sum_probs=240.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccCcchhH
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS-SKDSSTQENAIAALLNLSKHCKSKS 456 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~ 456 (685)
.+.|+.|++.|++++++.+..|+++|++|+..++++|..++++|+||.|+.+|. +++.++++.|+++|.||+.++++|.
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~ 122 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence 457999999999999999999999999999877899999999999999999999 8899999999999999999999999
Q ss_pred HHHhcCcHHHHHHHhc--------CC-------CCHHHHHHHHHHHHHhcCchhHHHHhhcCC-CcHHHHHHHhccC---
Q 039015 457 MVVESGGLDFIVDMVK--------KG-------LKVEARQHAAATLFYIASIEEYRKLIGENP-EAIPALVDMVRDG--- 517 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~--------~~-------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~-g~i~~Lv~lL~~~--- 517 (685)
.|++ |+++.|+.+|. .+ .+.++..+|+++|+||+.+++++..+.+ . |+++.|+.+|+++
T Consensus 123 ~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~ 200 (457)
T 1xm9_A 123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN-YSGLIDSLMAYVQNCVAA 200 (457)
T ss_dssp HHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT-STTHHHHHHHHHHHHHHH
T ss_pred HHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH-cCCCHHHHHHHHHhhccc
Confidence 9999 99999999993 22 1345666999999999999999999988 6 9999999888641
Q ss_pred --------------------------------------------------------------------------------
Q 039015 518 -------------------------------------------------------------------------------- 517 (685)
Q Consensus 518 -------------------------------------------------------------------------------- 517 (685)
T Consensus 201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (457)
T 1xm9_A 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY 280 (457)
T ss_dssp TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence
Q ss_pred ----------------CHHHHHHHHHHHHHhcCCCCc------HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 039015 518 ----------------TDRSKKNALVAIFGLLMHSGN------HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA 575 (685)
Q Consensus 518 ----------------~~~~~~~A~~aL~nLs~~~~n------~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La 575 (685)
++..++.|+++|.||+..... +..+.++|++|.|+++| .+++..++..|+++|.||+
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL-~~~~~~v~~~A~~aL~nls 359 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMS 359 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHH-hCCCHhHHHHHHHHHHHHh
Confidence 234556688999999976543 22334689999999999 6678899999999999999
Q ss_pred cChhcHHHHHhcCChHHHHHHhhcCCC-----hhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChHH
Q 039015 576 EKLDGTIAILHHGALDMIMKILDSCTS-----RAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSRA 649 (685)
Q Consensus 576 ~~~~~~~~i~~~g~v~~Lv~lL~~~~s-----~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~ 649 (685)
.++.++..|.. |+++.|+++|..+.. +.+...++.+|.++...+++. ...+.+ .|+++.|+.|+.++ ++++
T Consensus 360 ~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~-~~~i~~-~g~l~~L~~L~~~~~~~~i 436 (457)
T 1xm9_A 360 RHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFS-SSMLNNIINLCRSSASPKA 436 (457)
T ss_dssp TSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCC-HHHHHHHHHHHHCTTCHHH
T ss_pred cCHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHH-cCCHHHHHHHHcCCCcHHH
Confidence 99988877754 789999999987511 357778999999999876554 444444 79999999999999 9999
Q ss_pred HHHHHHHHHHHHHhhccc
Q 039015 650 SKKASALIRILHEFYERH 667 (685)
Q Consensus 650 k~~A~~lL~~l~~~~~~~ 667 (685)
+++|.++|..+..+.+-|
T Consensus 437 ~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 437 AEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHHHHcchhhh
Confidence 999999999877665543
No 7
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=1e-27 Score=256.35 Aligned_cols=244 Identities=18% Similarity=0.166 Sum_probs=215.8
Q ss_pred HHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhhcCCchhhHHHh-hCCHHHHHHhhcCCCHHHHHHHHHHhh
Q 039015 379 LLANFISDRLLE-----------GTSEEKNKVAYEVRLLTKSSIFNRSCLVE-VGCIPSLLKLLSSKDSSTQENAIAALL 446 (685)
Q Consensus 379 ~~i~~Lv~~L~s-----------~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~ip~Lv~lL~s~~~~~~~~A~~aL~ 446 (685)
+.++.|+..|.+ .+++.|..|+++|++|+.++..+|..+.. .|+||.|+.+|.+++.++++.|+++|.
T Consensus 73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~ 152 (354)
T 3nmw_A 73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 152 (354)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 457777777742 24678999999999999877778888865 466999999999999999999999999
Q ss_pred ccccC--cchhHHHHhcCcHHHHHHHh-cCCCCHHHHHHHHHHHHHhcC-chhHHHHhhcCCCcHHHHHHHhccCCH---
Q 039015 447 NLSKH--CKSKSMVVESGGLDFIVDMV-KKGLKVEARQHAAATLFYIAS-IEEYRKLIGENPEAIPALVDMVRDGTD--- 519 (685)
Q Consensus 447 nLs~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~--- 519 (685)
||+.+ +++|..|++.|+|+.|+++| +.+ +.++++.|+.+|++|+. .++++..|....|+||.|+.+|.++++
T Consensus 153 nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~ 231 (354)
T 3nmw_A 153 NLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231 (354)
T ss_dssp HHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSC
T ss_pred HHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCccc
Confidence 99985 46899999999999999985 556 89999999999999998 678999998449999999999987764
Q ss_pred -HHHHHHHHHHHHhcC----CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh-cChhcHHHHHhcCChHHH
Q 039015 520 -RSKKNALVAIFGLLM----HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA-EKLDGTIAILHHGALDMI 593 (685)
Q Consensus 520 -~~~~~A~~aL~nLs~----~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La-~~~~~~~~i~~~g~v~~L 593 (685)
..+++|+++|+||+. .++++..++++|+++.|+++| .+++..+++.|+++|.||+ .+++++..+.+.|++|.|
T Consensus 232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~L 310 (354)
T 3nmw_A 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHH-cCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence 589999999999995 778999999999999999999 5677889999999999999 578999999999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhccCcHHHH
Q 039015 594 MKILDSCTSRAGKEYCVSLLLALCINGGANVV 625 (685)
Q Consensus 594 v~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~ 625 (685)
+++|+++ ++.+++.|+++|.+|+.+.+....
T Consensus 311 v~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 311 KNLIHSK-HKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HTTTTCS-SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHhCC-CHHHHHHHHHHHHHHHcCCHHHHh
Confidence 9999998 999999999999999998766533
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=1.2e-26 Score=269.28 Aligned_cols=283 Identities=16% Similarity=0.150 Sum_probs=245.5
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-----------------------------chh---hHHHhhCCHH
Q 039015 377 MKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSI-----------------------------FNR---SCLVEVGCIP 424 (685)
Q Consensus 377 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~-----------------------------~~r---~~i~~~G~ip 424 (685)
..+.++.|+..|++++...+..|++.|.+++.+.+ .++ ..++++|++|
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 35689999999999999999999999999997442 123 6788999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc--
Q 039015 425 SLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE-- 502 (685)
Q Consensus 425 ~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-- 502 (685)
.|+.+|+++++.+|+.|+++|.||+.++++|..+++.|++++|+.+|+++ +...+++|+++|.+|+...+....+..
T Consensus 499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~ 577 (810)
T 3now_A 499 ALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQR 577 (810)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence 99999999999999999999999999989999999999999999999999 899999999999999876544433321
Q ss_pred CCCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhc
Q 039015 503 NPEAIPALVDMVRDG-TDRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG 580 (685)
Q Consensus 503 ~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~ 580 (685)
..|++|+|+.+|.++ +...+..|++||.||+..+ +++..++++|+++.|+.+| .++++.++..|+.+|.||+.+++.
T Consensus 578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL-~s~~~~Vq~~A~~~L~NLa~~~~~ 656 (810)
T 3now_A 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYL-MEDHLYLTRAAAQCLCNLVMSEDV 656 (810)
T ss_dssp HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-HSCCTTHHHHHHHHHHHHTTSHHH
T ss_pred hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCChHH
Confidence 136899999999865 3455678999999999875 6899999999999999999 567789999999999999999999
Q ss_pred HHHHHh-cCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 039015 581 TIAILH-HGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRI 659 (685)
Q Consensus 581 ~~~i~~-~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~ 659 (685)
+..+.+ .|+++.|+.++++. +..++..|+++|.+|+.+++...... ....|+++.|+.|+.+++...+..|.+.+..
T Consensus 657 ~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~i-i~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~N 734 (810)
T 3now_A 657 IKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKI-LAIASWLDILHTLIANPSPAVQHRGIVIILN 734 (810)
T ss_dssp HHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHH-HTSTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHH-HHHcCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 988885 56799999999987 99999999999999998654444444 4437999999999999999999999999988
Q ss_pred HHHh
Q 039015 660 LHEF 663 (685)
Q Consensus 660 l~~~ 663 (685)
+...
T Consensus 735 L~~~ 738 (810)
T 3now_A 735 MINA 738 (810)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 8654
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.95 E-value=3.2e-26 Score=257.62 Aligned_cols=283 Identities=17% Similarity=0.138 Sum_probs=232.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-CCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchh
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKS-SIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~-~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
.+.|+.|++.|.+++.++|..|+++|++|+.+ +.++|..|+++|+||.|+.+|.+ .+.+++++|+.+|.|||.++++|
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 35799999999999999999999999999985 58999999999999999999997 68899999999999999999999
Q ss_pred HHHHhcCcHHHHHHHhc-----------------CCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhcc-
Q 039015 456 SMVVESGGLDFIVDMVK-----------------KGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRD- 516 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~-----------------~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~- 516 (685)
..|++ |++++|+++|. ...+.+++.+|+++|+||+..+ ++|..|.+..|+|+.||.+|++
T Consensus 169 ~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 169 MEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE 247 (584)
T ss_dssp HHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99995 57999999872 1114789999999999999876 5588888756777788777653
Q ss_pred -----CC--------------------------------------------------------------------HHHHH
Q 039015 517 -----GT--------------------------------------------------------------------DRSKK 523 (685)
Q Consensus 517 -----~~--------------------------------------------------------------------~~~~~ 523 (685)
.+ +.+++
T Consensus 248 ~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E 327 (584)
T 3l6x_A 248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327 (584)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred hcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence 12 33444
Q ss_pred HHHHHHHHhcCCCC-----cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhh
Q 039015 524 NALVAIFGLLMHSG-----NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILD 598 (685)
Q Consensus 524 ~A~~aL~nLs~~~~-----n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~ 598 (685)
+|++||.||+.... ++..+.+.|++|.|++|| ..++..++..|+++|.||+.++.++..| ..|++|.||.+|.
T Consensus 328 ~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~ 405 (584)
T 3l6x_A 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL-TNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLP 405 (584)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSS
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhc
Confidence 55556666654321 223344578999999999 5677899999999999999999998877 6788999999998
Q ss_pred cCC-------ChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC--ChHHHHHHHHHHHHHHHhhc
Q 039015 599 SCT-------SRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG--SSRASKKASALIRILHEFYE 665 (685)
Q Consensus 599 ~~~-------s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g--~~~~k~~A~~lL~~l~~~~~ 665 (685)
++. +..+...|+++|.+|+..+++. .+.+.. .|+++.|+.|+.++ .+++++.|+++|..+..+.+
T Consensus 406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~-~~~I~~-~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 406 GGQQNSSWNFSEDTVISILNTINEVIAENLEA-AKKLRE-TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH-HHHHHH-TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred CCcccccccchHHHHHHHHHHHHHHhcCCHHH-HHHHHH-CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 752 3567889999999999877555 445555 89999999999987 88999999999999976543
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.94 E-value=2.8e-26 Score=266.26 Aligned_cols=283 Identities=17% Similarity=0.187 Sum_probs=245.4
Q ss_pred hhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCchhhHHH-hhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC
Q 039015 375 GAMKLLANFISDRLLEG--TSEEKNKVAYEVRLLTKSSIFNRSCLV-EVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH 451 (685)
Q Consensus 375 ~~~~~~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~~r~~i~-~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~ 451 (685)
++....++.|+++|.++ +.+++..|++.|.+|+. ++..|..++ +.|+||.|+.+|++++..++..|+++|.||+.+
T Consensus 373 g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~ 451 (810)
T 3now_A 373 GAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNA 451 (810)
T ss_dssp THHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Confidence 34556789999999887 88999999999999997 667777777 579999999999999999999999999999975
Q ss_pred cc------------------------------hh---HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHH
Q 039015 452 CK------------------------------SK---SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRK 498 (685)
Q Consensus 452 ~~------------------------------~k---~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 498 (685)
.+ ++ ..++++|+++.|+.+|+++ ++++++.|+++|.||+.+++++.
T Consensus 452 ~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~-s~~vqe~Aa~aL~NLA~d~~~r~ 530 (810)
T 3now_A 452 YEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE-SHNSQELIARVLNAVCGLKELRG 530 (810)
T ss_dssp SCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC-CHHHHHHHHHHHHHHHTSHHHHH
T ss_pred chhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 42 12 5677999999999999999 99999999999999999999999
Q ss_pred HhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHH---HhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 039015 499 LIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRF---LAAGAVPLLLNLLTSSDSEELITDSLAVLATLA 575 (685)
Q Consensus 499 ~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i---v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La 575 (685)
.+.+ .|++|+|+.+|+++++.+++.|++||.||+.+.+....+ ...|++|+|+.+|.++.+......|+.+|.||+
T Consensus 531 ~Vv~-~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa 609 (810)
T 3now_A 531 KVVQ-EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA 609 (810)
T ss_dssp HHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred HHHH-CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 9999 999999999999999999999999999999765433322 124699999999953334445568999999999
Q ss_pred cC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHH
Q 039015 576 EK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKAS 654 (685)
Q Consensus 576 ~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~ 654 (685)
.. ++.+..|++.|+++.|+.+|.++ ++.+++.|+.+|.+|+.+ +..+..+..+.|+++.|+.|+.+.+..+++.|.
T Consensus 610 ~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa 686 (810)
T 3now_A 610 SMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDEETATACA 686 (810)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHH
Confidence 87 57788999999999999999987 999999999999999987 445555555579999999999999999999999
Q ss_pred HHHHHHHHh
Q 039015 655 ALIRILHEF 663 (685)
Q Consensus 655 ~lL~~l~~~ 663 (685)
+.|..+...
T Consensus 687 ~ALanLt~~ 695 (810)
T 3now_A 687 GALAIITSV 695 (810)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhCC
Confidence 999999884
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=1.4e-25 Score=252.76 Aligned_cols=283 Identities=16% Similarity=0.230 Sum_probs=243.9
Q ss_pred hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chh
Q 039015 378 KLLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSK 455 (685)
Q Consensus 378 ~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k 455 (685)
.+.|+.|++.|++ ++++.|..|+++|.+++.++++++..++++|+||.|+.+|.+++..+++.|+++|.||+.+. ..|
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 3579999999964 56899999999999999989999999999999999999999999999999999999999875 457
Q ss_pred HHHHhcCcHHHHHHHhcCCC----------------------------------------------CHHHHHHHHHHHHH
Q 039015 456 SMVVESGGLDFIVDMVKKGL----------------------------------------------KVEARQHAAATLFY 489 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~----------------------------------------------~~e~~~~Aa~~L~~ 489 (685)
..+.+.|++++|+.+|.... +.+++..|+++|.+
T Consensus 179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258 (510)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88878888888887764320 56778888888888
Q ss_pred hcCchhHHH-HhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHH
Q 039015 490 IASIEEYRK-LIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDS 567 (685)
Q Consensus 490 Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~a 567 (685)
|+..++.+. .+.. .|+++.|+.+|.+++..++..|+.+|.|++... .++..+++.|+++.|+.+| .+++..++..|
T Consensus 259 L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~v~~~A 336 (510)
T 3ul1_B 259 LTDGPNERIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEA 336 (510)
T ss_dssp HTSSCHHHHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CT-TCSSHHHHHHH
T ss_pred HhhchhhhHHHHHh-cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHh-cCCCHHHHHHH
Confidence 887765444 4455 899999999999999999999999999998765 4778889999999999999 67788999999
Q ss_pred HHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCC
Q 039015 568 LAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGS 646 (685)
Q Consensus 568 l~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~ 646 (685)
+++|.||+. ++..+..+.+.|++|.|+.+++++ +..++..|+++|.+++.++..+....+.+ .|+++.|+.++.+.+
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~-~g~i~~L~~LL~~~d 414 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKD 414 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHH-TTCHHHHHHGGGCSC
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcCCC
Confidence 999999976 466777889999999999999998 99999999999999998776666666776 899999999999999
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 039015 647 SRASKKASALIRILHEFY 664 (685)
Q Consensus 647 ~~~k~~A~~lL~~l~~~~ 664 (685)
+++...+...|..+-...
T Consensus 415 ~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 415 TKIIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999988888777765543
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=3.9e-25 Score=250.21 Aligned_cols=283 Identities=16% Similarity=0.223 Sum_probs=243.1
Q ss_pred hHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chh
Q 039015 378 KLLANFISDRLL-EGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSK 455 (685)
Q Consensus 378 ~~~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k 455 (685)
.+.|+.|++.|. +.+++.|..|+++|.+++.++.+++..+++.|+||.|+.+|.+++..+++.|+++|.||+.+. ++|
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 357999999996 456899999999999999988889999999999999999999999999999999999999875 568
Q ss_pred HHHHhcCcHHHHHHHhcCCC----------------------------------------------CHHHHHHHHHHHHH
Q 039015 456 SMVVESGGLDFIVDMVKKGL----------------------------------------------KVEARQHAAATLFY 489 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~----------------------------------------------~~e~~~~Aa~~L~~ 489 (685)
..+++.|++++|+.+|..+. +.+++..|+++|.+
T Consensus 198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~ 277 (529)
T 3tpo_A 198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 277 (529)
T ss_dssp HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 88888888887777664220 55677778888888
Q ss_pred hcCchhH-HHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHH
Q 039015 490 IASIEEY-RKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDS 567 (685)
Q Consensus 490 Ls~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~a 567 (685)
|+..++. ...+.. .|+++.|+.+|.++++.++..|+.+|.||+... .++..+++.|+++.|+.+| .++++.++..|
T Consensus 278 l~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~i~~~a 355 (529)
T 3tpo_A 278 LTDGPNERIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEA 355 (529)
T ss_dssp HHSSCHHHHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT-TCSSHHHHHHH
T ss_pred hhhhhhhhHHHHHh-ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH-cCCCHHHHHHH
Confidence 8876644 444555 899999999999999999999999999998755 4778889999999999999 67788999999
Q ss_pred HHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCC
Q 039015 568 LAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGS 646 (685)
Q Consensus 568 l~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~ 646 (685)
+++|.||+. ++..+..+.+.|++|.|+.++.++ +..++..|+++|.+++.++..+....+.+ .|++++|+.|+.+.+
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~-~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHH-TTCHHHHHHGGGCSC
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHH-CcCHHHHHHHhcCCC
Confidence 999999987 466677788999999999999998 99999999999999998766665666766 899999999999999
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 039015 647 SRASKKASALIRILHEFY 664 (685)
Q Consensus 647 ~~~k~~A~~lL~~l~~~~ 664 (685)
+++...+...|..+-...
T Consensus 434 ~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 434 TKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999988888877776543
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=5.8e-25 Score=247.62 Aligned_cols=278 Identities=18% Similarity=0.209 Sum_probs=232.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhh-cCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCc-chhH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTK-SSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHC-KSKS 456 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~-~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~-~~k~ 456 (685)
.++.+|+.+.|++++.|..|+..+|.+.. +...-...++++|+||.||.+|++ +++.+|..|+++|.||+.+. +++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 48999999999999999999999998653 222335789999999999999975 56899999999999998655 6688
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcH----------------------------
Q 039015 457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAI---------------------------- 507 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i---------------------------- 507 (685)
.+++.|+|+.|+.+|+++ +.++++.|+++|.+|+.+. +++..+.. .|++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215 (510)
T ss_dssp HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999864 66666654 4444
Q ss_pred -------------------HHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH-HHHHhcCChHHHHHHhccCCChhHHHHH
Q 039015 508 -------------------PALVDMVRDGTDRSKKNALVAIFGLLMHSGNH-WRFLAAGAVPLLLNLLTSSDSEELITDS 567 (685)
Q Consensus 508 -------------------~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~a 567 (685)
|.|+.+|.+++++++..|+++|.+|+.+..++ ..+++.|+++.|+.+| .+.+..++..+
T Consensus 216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a 294 (510)
T 3ul1_B 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPA 294 (510)
T ss_dssp HHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHH
T ss_pred HHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh-cCCChhhhhHH
Confidence 44555555556667778888888888766544 5567899999999999 66788999999
Q ss_pred HHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCC
Q 039015 568 LAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGS 646 (685)
Q Consensus 568 l~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~ 646 (685)
+.+|.||+.. +..+..+.+.|+++.|+.+|+++ ++.+++.|+++|.+|+.++... ...+.. .|+++.|+.++.+++
T Consensus 295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~-~~~v~~-~g~i~~Lv~lL~~~~ 371 (510)
T 3ul1_B 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQ-IQQVVN-HGLVPFLVGVLSKAD 371 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHH-HHHHHH-TTHHHHHHHHHHSSC
T ss_pred HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHH-HHHHHh-cCCHHHHHHHHcCCC
Confidence 9999999764 66777889999999999999987 9999999999999999886544 445555 799999999999999
Q ss_pred hHHHHHHHHHHHHHHHh
Q 039015 647 SRASKKASALIRILHEF 663 (685)
Q Consensus 647 ~~~k~~A~~lL~~l~~~ 663 (685)
..+++.|.+.|..+...
T Consensus 372 ~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 372 FKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 99999999999887653
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=8.6e-25 Score=221.26 Aligned_cols=238 Identities=23% Similarity=0.310 Sum_probs=220.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSMV 458 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~i 458 (685)
.++.|++.|.+++++.+..|++.|.+++..+++++..+.+.|++|.|+.+|.+++..++..|+++|.+|+.+ ++++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 478999999999999999999999999987777999999999999999999999999999999999999988 6779999
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIA-SIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 537 (685)
.+.|+++.|+.+|+++ +.+++..|+++|.+|+ ..++++..+.. .|+++.|++++.++++..+..|+++|.||+...+
T Consensus 83 ~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999998 9999999999999999 56788999988 9999999999999999999999999999998654
Q ss_pred -cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015 538 -NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLA 615 (685)
Q Consensus 538 -n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~ 615 (685)
++..+++.|+++.|+.+| .++++.++..|+.+|.+|+. ++..+..+.+.|+++.|+++++++ ++.+++.|+++|.+
T Consensus 161 ~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 568889999999999999 56788999999999999998 577778889999999999999988 99999999999999
Q ss_pred HhccCc
Q 039015 616 LCINGG 621 (685)
Q Consensus 616 L~~~~~ 621 (685)
|+...+
T Consensus 239 l~~~~~ 244 (252)
T 4hxt_A 239 IKSGGW 244 (252)
T ss_dssp HHHTCB
T ss_pred HHcCCC
Confidence 998754
No 15
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=4.3e-25 Score=224.44 Aligned_cols=235 Identities=21% Similarity=0.279 Sum_probs=214.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc-CcchhHHHH
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSK-HCKSKSMVV 459 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~-~~~~k~~i~ 459 (685)
.+.++..|.+++++.+..|++.|+++...+..++..+.+.|+||.|+.+|.++++.++..|+++|.||+. +++++..++
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6888999999999999999999976555577889999999999999999999999999999999999998 467799999
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHH-HHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-C
Q 039015 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYR-KLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-G 537 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~ 537 (685)
+.|+++.|+.+|+++ +.+++..|+++|.+|+..++.+ ..+.. .|+++.|+.+|.++++.++..|+++|.||+... +
T Consensus 94 ~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 94 DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999998 9999999999999999999888 77777 999999999999999999999999999999755 5
Q ss_pred cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015 538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL 616 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L 616 (685)
++..+++.|+++.|+++| .++++.++..|+.+|.+|+. ++..+..+.+.|+++.|+.+++++ ++.+++.|+.+|.+|
T Consensus 172 ~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 777888999999999999 56689999999999999985 577888899999999999999988 999999999999999
Q ss_pred hcc
Q 039015 617 CIN 619 (685)
Q Consensus 617 ~~~ 619 (685)
+.+
T Consensus 250 ~~~ 252 (252)
T 4db8_A 250 QSH 252 (252)
T ss_dssp C--
T ss_pred hcC
Confidence 853
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.93 E-value=4.2e-24 Score=241.72 Aligned_cols=278 Identities=18% Similarity=0.210 Sum_probs=233.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHh-hcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCc-chhH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLT-KSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHC-KSKS 456 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La-~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~-~~k~ 456 (685)
.++.+++.+.|++++.+..|+..++.+. .+.......+++.|+||.|+.+|.. +++.+|..|+++|.|++.+. +++.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4788999999999999999999998864 3333446789999999999999975 56899999999999999876 4578
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc-hhHHHHhhcCCCc-----------------------------
Q 039015 457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI-EEYRKLIGENPEA----------------------------- 506 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~~g~----------------------------- 506 (685)
.+++.|+|+.|+.+|.++ +.++++.|+++|.+|+.+ ++++..+.. .|+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~-~~~v~e~A~~aL~nLa~~~~~~r~~i~~-~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGAGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhccCHHHHHHHHH-cCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence 888999999999999999 999999999999999975 466666654 444
Q ss_pred ------------------HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-HHHHHhcCChHHHHHHhccCCChhHHHHH
Q 039015 507 ------------------IPALVDMVRDGTDRSKKNALVAIFGLLMHSGN-HWRFLAAGAVPLLLNLLTSSDSEELITDS 567 (685)
Q Consensus 507 ------------------i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-~~~iv~~G~v~~Lv~lL~~~~~~~~~~~a 567 (685)
+|.|+.+|.+++++++.+|+++|.+|+.+..+ ...++++|+++.|+.+| .+++..++..|
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~a 313 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPA 313 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHHHH
Confidence 45555555556666777888888888876654 45567899999999999 67788999999
Q ss_pred HHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCC
Q 039015 568 LAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGS 646 (685)
Q Consensus 568 l~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~ 646 (685)
+.+|.||+.+ +..+..+.+.|+++.|+.+|+++ ++.++..|+++|.+|+.++... ...+.. .|+++.|+.++.+++
T Consensus 314 ~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~-~~~v~~-~g~i~~Lv~lL~~~~ 390 (529)
T 3tpo_A 314 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQ-IQQVVN-HGLVPFLVGVLSKAD 390 (529)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHH-HHHHHH-TTHHHHHHHHHHSSC
T ss_pred HHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHH-HHHHHh-cCcHHHHHHHhcCCC
Confidence 9999999764 66778889999999999999988 9999999999999999886444 444555 899999999999999
Q ss_pred hHHHHHHHHHHHHHHHh
Q 039015 647 SRASKKASALIRILHEF 663 (685)
Q Consensus 647 ~~~k~~A~~lL~~l~~~ 663 (685)
..+++.|.+.|..+...
T Consensus 391 ~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 391 FKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999988887653
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.92 E-value=1.1e-23 Score=237.92 Aligned_cols=281 Identities=18% Similarity=0.232 Sum_probs=247.6
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhH
Q 039015 379 LLANFISDRLLEGT-SEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKS 456 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~-~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~ 456 (685)
+.++.|++.|.+++ ++.+..|+++|.+++..+++++..+++.|++|.|+.+|.+++..+++.|+++|.||+.+. .++.
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 196 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD 196 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 46899999998876 999999999999999977899999999999999999999999999999999999999775 5688
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015 457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS 536 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 536 (685)
.+.+.|+++.|+.+|....+..++..|+++|.+|+........... .|+++.|+.+|.++++.++..|+++|.+|+...
T Consensus 197 ~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 197 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp HHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 8999999999999995444899999999999999987544444445 899999999999999999999999999999876
Q ss_pred CcH-HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015 537 GNH-WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL 614 (685)
Q Consensus 537 ~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~ 614 (685)
+++ ..+++.|+++.|+.+| .+++..++..|+.+|.+|+. ++.....+.+.|+++.|+.+|.++.++.++..|+++|.
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELL-LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHH-cCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 654 5778999999999999 56678999999999999988 46677778888899999999987547899999999999
Q ss_pred HHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 615 ALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
+|+..+++ ....+.. .|+++.|+.++.+++..++..|.+.|..+...
T Consensus 355 nl~~~~~~-~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 355 NITAGNKD-QIQAVIN-AGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHTSCHH-HHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHH-HHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99986544 3445555 79999999999999999999999999988765
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.92 E-value=3.1e-23 Score=234.20 Aligned_cols=278 Identities=17% Similarity=0.184 Sum_probs=247.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-chhhHHHhhCCHHHHHHhhcCCC-HHHHHHHHHHhhccccC-cchh
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSI-FNRSCLVEVGCIPSLLKLLSSKD-SSTQENAIAALLNLSKH-CKSK 455 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~-~~r~~i~~~G~ip~Lv~lL~s~~-~~~~~~A~~aL~nLs~~-~~~k 455 (685)
..++.|+..|.+++++.+..|+..|+.++.... .+...+++.|++|.|+.+|.+++ +.++..|+++|.+++.+ ++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458999999999999999999999999976554 67888999999999999999876 99999999999999987 5678
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc-hhHHHHhhcCCCcHHHHHHHh-ccCCHHHHHHHHHHHHHhc
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI-EEYRKLIGENPEAIPALVDMV-RDGTDRSKKNALVAIFGLL 533 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs 533 (685)
..+++.|+++.|+.+|.++ +.+++..|+++|.+|+.. ++++..+.. .|+++.|+.+| .+.++..+..|+++|.||+
T Consensus 154 ~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999998 999999999999999976 467888888 89999999999 5677899999999999999
Q ss_pred CCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcH-HHHHhcCChHHHHHHhhcCCChhHHHHHHHH
Q 039015 534 MHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGT-IAILHHGALDMIMKILDSCTSRAGKEYCVSL 612 (685)
Q Consensus 534 ~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~ 612 (685)
.+..+.......|+++.|+.+| .+.+..++..|+.+|.+|+.....+ ..+.+.|+++.|+.+|.++ ++.++..|+.+
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~ 309 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRT 309 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHH
Confidence 8876666677799999999999 6678899999999999999876554 5678889999999999988 89999999999
Q ss_pred HHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHHH
Q 039015 613 LLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSRASKKASALIRILHE 662 (685)
Q Consensus 613 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~k~~A~~lL~~l~~ 662 (685)
|.+|+.+++. ..+.+.. .|+++.|+.++.++ ++.++..|.++|..|..
T Consensus 310 L~nl~~~~~~-~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 310 VGNIVTGDDA-QTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHTTSCHH-HHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHH-HHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 9999987644 4455555 89999999999999 89999999999998875
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.92 E-value=1.5e-23 Score=212.00 Aligned_cols=241 Identities=23% Similarity=0.292 Sum_probs=219.3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc-hhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc-hhHHH
Q 039015 421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK-SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI-EEYRK 498 (685)
Q Consensus 421 G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~-~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~ 498 (685)
|+||.|+.+|.+++++++..|+++|.+++.++. ++..+++.|+++.|+.+|+++ +.+++..|+++|.+|+.. ++++.
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHH
Confidence 679999999999999999999999999998775 799999999999999999999 899999999999999988 78999
Q ss_pred HhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015 499 LIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLL-MHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 499 ~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~ 577 (685)
.+.. .|+++.|+.+|+++++..+..|+++|.||+ .+++++..+++.|+++.|+++| .++++.++..|+.+|.+|+..
T Consensus 81 ~~~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 81 AIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHH-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence 9988 999999999999999999999999999999 5667899999999999999999 567789999999999999985
Q ss_pred -hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 039015 578 -LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASAL 656 (685)
Q Consensus 578 -~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~l 656 (685)
+..+..+.+.|+++.|+.++.++ ++.++..|+.+|.+++..+ +.....+.. .|+++.|+.++.++++.+++.|.++
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~-~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGP-TSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSB-HHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCC-HHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 55567888989999999999987 9999999999999999865 445556666 8999999999999999999999999
Q ss_pred HHHHHHhhccc
Q 039015 657 IRILHEFYERH 667 (685)
Q Consensus 657 L~~l~~~~~~~ 667 (685)
|..|.......
T Consensus 236 L~~l~~~~~~~ 246 (252)
T 4hxt_A 236 LENIKSGGWLE 246 (252)
T ss_dssp HHHHHHTCBCC
T ss_pred HHHHHcCCCcc
Confidence 99998876543
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=4.3e-22 Score=225.10 Aligned_cols=278 Identities=15% Similarity=0.197 Sum_probs=246.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-CchhhHHHhhCCHHHHHHhhcCC-CHHHHHHHHHHhhccccCc-chh
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSS-IFNRSCLVEVGCIPSLLKLLSSK-DSSTQENAIAALLNLSKHC-KSK 455 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~ip~Lv~lL~s~-~~~~~~~A~~aL~nLs~~~-~~k 455 (685)
..++.|+..|.+++++.+..|+..|+.+.... ..++..+++.|++|.|+.+|.++ ++.++..|+++|.+++.+. +.+
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 34899999999999999999999999986532 45667889999999999999997 8999999999999999875 568
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc-hhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI-EEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
..+++.|+++.|+.+|+++ +.+++..|+++|.+|+.. ++++..+.. .|+++.|+.++.++++.++..|+++|.+|+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 8888999999999999988 999999999999999986 478888888 8999999999999889999999999999998
Q ss_pred CC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHH
Q 039015 535 HS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSL 612 (685)
Q Consensus 535 ~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~ 612 (685)
+. ++.......|+++.|+.+| .+.+..++..|+.+|.+|+.. ++....+.+.|+++.|+.+|.++ ++.++..|+.+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~ 322 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRA 322 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHH
Confidence 76 6666777899999999999 567789999999999999975 56677888889999999999987 99999999999
Q ss_pred HHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015 613 LLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE 662 (685)
Q Consensus 613 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 662 (685)
|.+++.+++.. .+.+.. .|+++.|+.++.+++..++..|.+.|..+..
T Consensus 323 L~~l~~~~~~~-~~~~~~-~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 323 VGNIVTGNDLQ-TQVVIN-AGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp HHHHTTSCHHH-HHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHH-HHHHHH-cchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999876443 444455 7999999999999999999999999998875
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.91 E-value=6.3e-23 Score=208.35 Aligned_cols=236 Identities=22% Similarity=0.297 Sum_probs=212.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhcc-ccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHHH
Q 039015 421 GCIPSLLKLLSSKDSSTQENAIAALLNL-SKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYRK 498 (685)
Q Consensus 421 G~ip~Lv~lL~s~~~~~~~~A~~aL~nL-s~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~ 498 (685)
...+.++.+|.+++++++..|+++|.++ +.+++++..+++.|+++.|+.+|+++ +.+++..|+++|.+|+. .++++.
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5689999999999999999999999765 55667788999999999999999999 89999999999999997 678999
Q ss_pred HhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH-HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015 499 LIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH-WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 499 ~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~ 577 (685)
.+.. .|+++.|+.+|+++++.++..|+++|.||+.+.+++ ..+++.|+++.|+++| .+++..++..|+.+|.+|+..
T Consensus 91 ~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 91 AVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9998 899999999999999999999999999999999888 8899999999999999 567889999999999999984
Q ss_pred -hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 039015 578 -LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASAL 656 (685)
Q Consensus 578 -~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~l 656 (685)
++.+..+.+.|+++.|+.+++++ ++.+++.|+.+|.+|+..++ .....+.+ .|+++.|+.++.++++.+++.|.++
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~A~~~ 245 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN-EQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEA 245 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCH-HHHHHHHH-TTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCH-HHHHHHHH-CCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 56777788999999999999988 99999999999999997654 44555555 8999999999999999999999999
Q ss_pred HHHHHH
Q 039015 657 IRILHE 662 (685)
Q Consensus 657 L~~l~~ 662 (685)
|..|..
T Consensus 246 L~~l~~ 251 (252)
T 4db8_A 246 LEKLQS 251 (252)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 987643
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.90 E-value=4.6e-22 Score=219.03 Aligned_cols=281 Identities=16% Similarity=0.189 Sum_probs=245.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCc--chh
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHC--KSK 455 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~--~~k 455 (685)
+.++.|++.|.+++++.+..|++.|.+++..+++++..+.+.|++|.|+.+|.+ .+..++..|+++|.+|+.+. ..+
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 186 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE 186 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 468999999999999999999999999998777899999999999999999996 78999999999999999765 233
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
..++ .|+++.|+.+|..+ +.+++..|+++|.+|+... +.+..+.. .|+++.|+.+|.++++.++..|+.+|.+|+.
T Consensus 187 ~~~~-~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 187 FAKV-SPCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHNDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp GGGT-GGGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCCchhHHHHHHHHHHHHhh
Confidence 3333 89999999999988 8999999999999999864 66777777 8999999999999999999999999999998
Q ss_pred CCC-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHH
Q 039015 535 HSG-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSL 612 (685)
Q Consensus 535 ~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~ 612 (685)
..+ ....+++.|+++.|+.+| .+++..++..|+.+|.+++. ++.....+.+.|+++.|+.++.++ ++.++..|+++
T Consensus 264 ~~~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~ 341 (450)
T 2jdq_A 264 GDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWA 341 (450)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred CChHHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHH
Confidence 765 455678899999999999 56788999999999999996 567777888888999999999988 99999999999
Q ss_pred HHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015 613 LLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE 665 (685)
Q Consensus 613 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~ 665 (685)
|.+++.++.+.....+.. .|+++.|+.++.+++++++..|.+.|..+....+
T Consensus 342 L~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVE-LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHCCHHHHHHHHH-HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH-CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 999998744444454554 7899999999999999999999888887766543
No 23
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=210.48 Aligned_cols=196 Identities=16% Similarity=0.175 Sum_probs=175.4
Q ss_pred HHHHHHHHHhcCCCH--HHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc-Ccchh
Q 039015 379 LLANFISDRLLEGTS--EEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSK-HCKSK 455 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~--~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~-~~~~k 455 (685)
..++.|++.|.++++ +.+..|+..|++++.+++.+|..+++.|+||.|+.+|++++.++|+.|+++|.||+. +++||
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 458999999999988 889999999999999899999999999999999999999999999999999999998 46899
Q ss_pred HHHHhcCcHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc---cC-------------C
Q 039015 456 SMVVESGGLDFIVDMVK-KGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR---DG-------------T 518 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~-------------~ 518 (685)
..|++.|+|++|+++|+ .+ +.+++++|+++|++||..+++|..|.+ ++|++|++++. +| +
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCcccccccccccch
Confidence 99999999999999998 46 899999999999999999999999987 47999999763 12 4
Q ss_pred HHHHHHHHHHHHHhcCCC-CcHHHHHhc-CChHHHHHHhccC-----CChhHHHHHHHHHHHHhcC
Q 039015 519 DRSKKNALVAIFGLLMHS-GNHWRFLAA-GAVPLLLNLLTSS-----DSEELITDSLAVLATLAEK 577 (685)
Q Consensus 519 ~~~~~~A~~aL~nLs~~~-~n~~~iv~~-G~v~~Lv~lL~~~-----~~~~~~~~al~~L~~La~~ 577 (685)
+.++.+|+.+|+||+..+ ++|..|.+. |+|+.|+.+++.. .+...++.|+.+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 589999999999999854 799999986 6689999999631 3567889999999999864
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.90 E-value=5.2e-22 Score=224.43 Aligned_cols=282 Identities=17% Similarity=0.195 Sum_probs=248.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKSM 457 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~ 457 (685)
+.++.|+..|.+++++++..|++.|.+++..++.++..+.+.|++|.|+.+|.+.+..++..|+++|.+|+.+. .....
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 252 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcH
Confidence 46899999999999999999999999999877889999999999999999999999999999999999999876 55556
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS 536 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 536 (685)
....|+++.|+.+|.++ +.+++..|+++|.+|+... +....+.. .|+++.|+.+|.++++.++..|+.+|.||+...
T Consensus 253 ~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 330 (530)
T 1wa5_B 253 SVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330 (530)
T ss_dssp HHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence 66789999999999998 8999999999999999764 56667776 899999999999999999999999999999765
Q ss_pred C-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015 537 G-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL 614 (685)
Q Consensus 537 ~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~ 614 (685)
+ ....+++.|+++.|+.+| .+++..++..|+.+|.+|+. ++.....+++.|+++.|+.+|.++ ++.++..|+++|.
T Consensus 331 ~~~~~~~~~~~~l~~L~~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~ 408 (530)
T 1wa5_B 331 DLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAIS 408 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 4 566778899999999999 56678999999999999986 566677788899999999999988 9999999999999
Q ss_pred HHhccCcH--HHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc
Q 039015 615 ALCINGGA--NVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFYE 665 (685)
Q Consensus 615 ~L~~~~~~--~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~ 665 (685)
+++..++. .....+.. .|+++.|+.++.++++.++..|.+.|..+-...+
T Consensus 409 ~l~~~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 409 NASSGGLQRPDIIRYLVS-QGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHHHHTTTCTHHHHHHHH-TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 99987544 44555555 8999999999999999999998888887766543
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.90 E-value=5.5e-22 Score=218.35 Aligned_cols=279 Identities=16% Similarity=0.157 Sum_probs=244.0
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhH
Q 039015 379 LLANFISDRLLEG-TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKS 456 (685)
Q Consensus 379 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~ 456 (685)
+.++.|++.|.++ +++.+..|++.|.+++..+.+++..+++.|++|.|+.+|.++++.+++.|+++|.+++.+. .++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 4689999999888 8999999999999999877788888899999999999999999999999999999999876 5688
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
.+++.|+++.|+.+|+.+.+.+++..|+++|.+|+... ..+..+ . .|+++.|+.++.++++..+..|+++|.+|+.
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-V-SPCLNVLSWLLFVSDTDVLADACWALSYLSD 221 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-T-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-H-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHC
Confidence 88899999999999996438999999999999999764 222222 2 6899999999999999999999999999998
Q ss_pred CC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCh-hcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHH
Q 039015 535 HS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL-DGTIAILHHGALDMIMKILDSCTSRAGKEYCVSL 612 (685)
Q Consensus 535 ~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~-~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~ 612 (685)
+. ++...+++.|+++.|+.+| .+++..++..|+.+|.+|+... .....+.+.|+++.|+.++.++ ++.++..|+++
T Consensus 222 ~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~ 299 (450)
T 2jdq_A 222 GPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWT 299 (450)
T ss_dssp SSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred CCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHH
Confidence 65 5677788999999999999 5778899999999999999864 4455678888899999999987 99999999999
Q ss_pred HHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 613 LLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 613 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
|.+++.++... .+.+.. .|+++.|+.++.++++.++..|.+.|..+...
T Consensus 300 L~~l~~~~~~~-~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 300 ISNITAGNRAQ-IQTVID-ANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHTTSCHHH-HHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHH-HHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99999866444 444555 79999999999999999999999999888654
No 26
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=6e-23 Score=205.43 Aligned_cols=195 Identities=13% Similarity=0.198 Sum_probs=174.6
Q ss_pred CHHHHHHhhcCCCH--HHHHHHHHHhhcccc-CcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHH
Q 039015 422 CIPSLLKLLSSKDS--STQENAIAALLNLSK-HCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYR 497 (685)
Q Consensus 422 ~ip~Lv~lL~s~~~--~~~~~A~~aL~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~ 497 (685)
.+|.|+.+|.++++ .++..|+++|.+|+. ++++|..|++.|+|++||++|+++ +.++++.|+++|.+|+. ++++|
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHH
Confidence 58999999999888 899999999999996 557899999999999999999999 99999999999999998 57999
Q ss_pred HHhhcCCCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhc---cC------------CCh
Q 039015 498 KLIGENPEAIPALVDMVR-DGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLT---SS------------DSE 561 (685)
Q Consensus 498 ~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~---~~------------~~~ 561 (685)
..|.+ .|+||+|+++|. +++...++.|+.+|+||+.+++++..+++. ++++|++++. ++ .+.
T Consensus 88 ~~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 99999 999999999998 478999999999999999999999999875 6999998763 11 256
Q ss_pred hHHHHHHHHHHHHhc-ChhcHHHHHhcCC-hHHHHHHhhcC-----CChhHHHHHHHHHHHHhcc
Q 039015 562 ELITDSLAVLATLAE-KLDGTIAILHHGA-LDMIMKILDSC-----TSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 562 ~~~~~al~~L~~La~-~~~~~~~i~~~g~-v~~Lv~lL~~~-----~s~~~~e~a~~~L~~L~~~ 619 (685)
.+.+.|.++|.||+. ++++|.++.+.+| |+.|+.+++.+ .+...+|+|+.+|.+||..
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 899999999999987 5799999999877 89999998863 2567899999999999975
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=1.1e-22 Score=228.96 Aligned_cols=277 Identities=18% Similarity=0.172 Sum_probs=247.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHh-hCCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchh
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVE-VGCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
.+.++.|+..|+++++..+..|+..|.+++. +..++..+.. .|+++.|+.+|.+ ++..++..|+.+|.+|+.+++++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 3568999999999999999999999999997 5567777765 4999999999975 48999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
..|.+.|+++.|+.+|+++ +++++..|+++|.+|+..+ +.+..+.+ .|++|.|+.+|.+++.+.+..++.+|.+|+.
T Consensus 95 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998 8999999999999999874 67777777 8999999999999999999999999999997
Q ss_pred C-CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHH
Q 039015 535 H-SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLL 613 (685)
Q Consensus 535 ~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L 613 (685)
. ++++..+++.|+++.|+++|.++........+..+|.+|+.++.++..+.+.|+++.|+.++.++ ++..++.++++|
T Consensus 173 ~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~L 251 (529)
T 1jdh_A 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTL 251 (529)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHHHH
Confidence 4 57899999999999999999766677888899999999999999999999999999999999988 999999999999
Q ss_pred HHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 614 LALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 614 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
.+||...+... ...|+++.|+.++.++++..+..|.++|..|...
T Consensus 252 ~~l~~~~~~~~-----~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 252 RNLSDAATKQE-----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HHHHTTCTTCS-----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCChhhH-----HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 99998753311 1136799999999999999999999999888653
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=233.17 Aligned_cols=276 Identities=18% Similarity=0.178 Sum_probs=247.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHHhhcCC-CHHHHHHHHHHhhccccCcchhH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLKLLSSK-DSSTQENAIAALLNLSKHCKSKS 456 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~lL~s~-~~~~~~~A~~aL~nLs~~~~~k~ 456 (685)
+.++.|+..|+++++.++..|+..|.+++.. ..++..+... |+++.|+.+|.+. +.+++..|+.+|.+|+.+++++.
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~-~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-TTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCC-ChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 4689999999999999999999999999984 4677777754 9999999999874 89999999999999999999999
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-
Q 039015 457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM- 534 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~- 534 (685)
.+.+.|+++.|+.+|+++ +.+++..|+.+|.+|+..+ +.+..+.. .|+++.|+.+|++++++.+..++.+|.+|+.
T Consensus 93 ~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999998 8999999999999999874 67777777 8999999999999999888889999999996
Q ss_pred CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015 535 HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL 614 (685)
Q Consensus 535 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~ 614 (685)
+++++..+++.|+++.|+++|.+.....++..++.+|.+|+.++.++..+++.|+++.|+.++..+ ++..++.++++|.
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~ 249 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLR 249 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS-CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 667999999999999999999666667888999999999999999999999999999999999988 9999999999999
Q ss_pred HHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 615 ALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
+||...+.. . ...|+++.|+.++.++++.++..|.++|..|...
T Consensus 250 nL~~~~~~~--~---~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 250 NLSDAATKQ--E---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHGGGCTTC--C---SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHhhcchhh--h---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999875331 1 1136799999999999999999999999888654
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=1.1e-21 Score=220.83 Aligned_cols=280 Identities=16% Similarity=0.094 Sum_probs=244.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSM 457 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~ 457 (685)
+.++.|++.|++++++.+..|++.|.+++..++.++..+.+.|++|.|+.+|.+++..++..++.+|.+++.. ++++..
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~ 180 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4689999999999999999999999999998788899999999999999999999999999999999999975 577999
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 537 (685)
+.+.|+++.|+.+|+.+.....+..++.+|.+|+..++++..+.. .|+++.|+.++.++++..+..++++|.||+.+..
T Consensus 181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence 999999999999999885667778899999999999999999998 8999999999999999999999999999997654
Q ss_pred cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcC-CChhHHHHHHHHHHH
Q 039015 538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSC-TSRAGKEYCVSLLLA 615 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~-~s~~~~e~a~~~L~~ 615 (685)
... ...|+++.|+++| .+.++.++..|+.+|.+|+.+ ++++..+.+.|+++.|++++... .++.+++.|+.+|.+
T Consensus 260 ~~~--~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n 336 (529)
T 1jdh_A 260 KQE--GMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336 (529)
T ss_dssp TCS--CCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhH--HHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 322 2347899999999 677899999999999999886 57899999999999999988763 247899999999999
Q ss_pred HhccCcH--HHHHHHHhcCCcHHHHHHHHhcCC-hHHHHHHHHHHHHHHHh
Q 039015 616 LCINGGA--NVVALLVKSPSLMGSLYSLLSQGS-SRASKKASALIRILHEF 663 (685)
Q Consensus 616 L~~~~~~--~~~~~l~~~~g~i~~L~~Ll~~g~-~~~k~~A~~lL~~l~~~ 663 (685)
|+.++++ ..+..+.. .|+++.|+.++.+++ ...++.|.++|..+...
T Consensus 337 l~~~~~~~~~~~~~i~~-~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 337 LTSRHQEAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HTSSSTTHHHHHHHHHH-TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHcCCchHHHHHHHHHH-cCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 9986543 24555665 789999999999986 48888888888877643
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=2e-21 Score=225.04 Aligned_cols=275 Identities=21% Similarity=0.187 Sum_probs=239.7
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhH
Q 039015 379 LLANFISDRLLEG-TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKS 456 (685)
Q Consensus 379 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~ 456 (685)
+.++.|++.|.++ +++.+..|+..|++|+. +.+++..+.+.|+||.|+.+|.++++.++..|+++|.||+.+. ..+.
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 5689999999765 89999999999999997 5679999999999999999999999999999999999999875 5577
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHHHHhhcCCCcHHHHHHHhccCC-HHHHHHHHHHHHHhcC
Q 039015 457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYRKLIGENPEAIPALVDMVRDGT-DRSKKNALVAIFGLLM 534 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~ 534 (685)
.+++.|+++.|+.+|+++ +...+..++.+|.+|+. +++++..+.. .|+++.|+.+|++++ ...+..++.+|+||+.
T Consensus 135 ~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 888999999999999998 88888888999999996 6799999998 899999999998876 5677899999999999
Q ss_pred CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015 535 HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL 614 (685)
Q Consensus 535 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~ 614 (685)
+++++..+++.|+++.|+.++ .+.+..++..++.+|.+|+...... ....+.++.|+.++++. ++.+++.|+++|.
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~-d~~v~~~a~~aL~ 288 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSD-DINVVTCAAGILS 288 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999999999999999999 5567899999999999998754321 11124689999999987 9999999999999
Q ss_pred HHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-C-hHHHHHHHHHHHHHHH
Q 039015 615 ALCINGGANVVALLVKSPSLMGSLYSLLSQG-S-SRASKKASALIRILHE 662 (685)
Q Consensus 615 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~-~~~k~~A~~lL~~l~~ 662 (685)
+|+.+++ ..+..+.+ .|+++.|+.++.+. + +.++..|...|..|..
T Consensus 289 ~L~~~~~-~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 289 NLTCNNY-KNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHHTTCH-HHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCH-HHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 9998764 34555555 89999999999874 3 6888999999988853
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=2e-21 Score=229.40 Aligned_cols=274 Identities=22% Similarity=0.235 Sum_probs=229.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
..++.+++.|.+++.+.+..++..|+.. ++..+. .|+||.|+.+|.++++.+++.|+.+|.+|+.++.++..+
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i 187 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 187 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3578899999999988888888887744 334454 899999999999999999999999999999998888888
Q ss_pred Hh-cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-
Q 039015 459 VE-SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS- 536 (685)
Q Consensus 459 ~~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~- 536 (685)
++ .|+++.|+.+|+++.+.+++.+|+.+|.+|+..++++..|+. .|+|+.|+.+|+++++.++..|+++|.||+.+.
T Consensus 188 ~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~-~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp TTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred HhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh
Confidence 85 599999999998665899999999999999999999999998 899999999999999999999999999999875
Q ss_pred CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015 537 GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLA 615 (685)
Q Consensus 537 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~ 615 (685)
+.+..+++.|+++.|+.+| .+.+..+...++.+|.+++. +++++..+.+.|+++.|+.+++.+.....++.++.+|++
T Consensus 267 ~~~~~v~~~g~v~~Lv~lL-~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~ 345 (780)
T 2z6g_A 267 GAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 345 (780)
T ss_dssp THHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5666677899999999999 45677888999999999986 688999999999999999999987455667789999999
Q ss_pred HhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015 616 LCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 616 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 664 (685)
||.. ......+.. .|+++.|+.++.+++...++.|.+.|..|....
T Consensus 346 Ls~~--~~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 346 LSVC--SSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp HHTS--TTHHHHHHH-TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred hhcC--hHHHHHHHH-hchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 9976 344556666 899999999999999999999988888887543
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=3.1e-21 Score=190.31 Aligned_cols=195 Identities=21% Similarity=0.263 Sum_probs=179.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSMV 458 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~i 458 (685)
..+.|+..|.+++++.+..|++.|.+++..+++++..+.+.|++|.|+.+|.++++.++..|+++|.||+.+ ++++..+
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 467889999999999999999999999988889999999999999999999999999999999999999964 5778999
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-C
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH-S 536 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~ 536 (685)
++.|+++.|+.+|+++ +..++..|+++|.+|+..+ +.+..+.. .|+++.|+++|+++++.++..|+++|.||+.+ +
T Consensus 93 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 93 IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 9999999999999999 9999999999999999654 66677777 89999999999999999999999999999987 5
Q ss_pred CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015 537 GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 537 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~ 577 (685)
+++..+++.|+++.|++++ .+++..+++.|+.+|.+|+.+
T Consensus 171 ~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQ-SHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHhcC
Confidence 6888899999999999999 577899999999999999863
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=5.1e-21 Score=188.83 Aligned_cols=198 Identities=22% Similarity=0.283 Sum_probs=178.3
Q ss_pred HhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chh
Q 039015 418 VEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEE 495 (685)
Q Consensus 418 ~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~ 495 (685)
...|+.|.|+.+|.+++..++..|+++|.+|+.+ ++++..+++.|+++.|+.+|+++ +.+++..|+++|.+|+. +++
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcH
Confidence 3468899999999999999999999999999954 56788999999999999999999 99999999999999995 668
Q ss_pred HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH
Q 039015 496 YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATL 574 (685)
Q Consensus 496 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L 574 (685)
++..+.+ .|+++.|+.+|.++++.++..|+++|.||+.+. +++..+++.|+++.|+++| .+++..++..|+.+|.+|
T Consensus 88 ~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 88 QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 8888988 999999999999999999999999999999755 4667889999999999999 566889999999999999
Q ss_pred hcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015 575 AEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 575 a~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
+.. ++.+..+.+.|+++.|++++.++ ++.+++.|+.+|.+|+.+
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC-
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhcC
Confidence 987 88888899999999999999987 999999999999999853
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.87 E-value=3.6e-21 Score=227.27 Aligned_cols=277 Identities=18% Similarity=0.187 Sum_probs=245.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcchh
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
.+.++.|+..|.+.++.+|..|+..|.+|+. +..++..+.+. |+++.|+.+|.+ .+..++..|+.+|.+|+.+++++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~-~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-SHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC-CChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 4578999999999999999999999999997 45677777754 899999999976 48999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 534 (685)
..|.+.|+++.|+.+|+++ +..++..|+++|.+|+... +.+..+.. .|+++.|+.+|.+++...+..|+.+|.+|+.
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 8999999999999999874 67777777 8999999999999899999999999999996
Q ss_pred -CCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHH
Q 039015 535 -HSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLL 613 (685)
Q Consensus 535 -~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L 613 (685)
+++++..+++.|+++.|+.+|.........+.++.+|.+|+.++.++..+++.|+++.|+.++.++ ++..++.|+++|
T Consensus 306 ~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a~~~L 384 (780)
T 2z6g_A 306 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTL 384 (780)
T ss_dssp TCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS-CHHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC-chHHHHHHHHHH
Confidence 467899999999999999999766667778889999999999999999999999999999999987 899999999999
Q ss_pred HHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 614 LALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 614 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
.+||...... ....++++.|+.++.+.++.++..|.++|..|...
T Consensus 385 ~~L~~~~~~~-----~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 385 RNLSDAATKQ-----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp HHHHTTCTTC-----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHhccchhh-----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 9999875331 01146799999999999999999999999888653
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.5e-21 Score=219.50 Aligned_cols=284 Identities=10% Similarity=0.136 Sum_probs=233.6
Q ss_pred hhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCc--------------------------------------hhhHH
Q 039015 377 MKLLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIF--------------------------------------NRSCL 417 (685)
Q Consensus 377 ~~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~--------------------------------------~r~~i 417 (685)
..+.+..|+..+++ .+......++..|.|++...+. ++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 45568888888874 6667788888888888753321 56778
Q ss_pred HhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCch
Q 039015 418 VEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVE---ARQHAAATLFYIASIE 494 (685)
Q Consensus 418 ~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e---~~~~Aa~~L~~Ls~~~ 494 (685)
.++|+||.|+.+++++++.+++.|+++|.|||.+.++|..+++.|++++|+.+|.++ +.. .+.+|+.+|.+|+...
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~-~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK-QDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHTS
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999988 443 8999999999998766
Q ss_pred hHHHHhhc--CCCcHHHHHHHhcc--CCH------------HHHHHHHHHHHHhcCCCCc-----HHHHHhc-CChHHHH
Q 039015 495 EYRKLIGE--NPEAIPALVDMVRD--GTD------------RSKKNALVAIFGLLMHSGN-----HWRFLAA-GAVPLLL 552 (685)
Q Consensus 495 ~~~~~i~~--~~g~i~~Lv~lL~~--~~~------------~~~~~A~~aL~nLs~~~~n-----~~~iv~~-G~v~~Lv 552 (685)
+....++. ..|+|++|+.+|.. +.. ..+..|+.||.||+..++| +.++++. |+++.|.
T Consensus 533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 66666642 14899999999983 211 2377999999999998743 7889996 9999999
Q ss_pred HHhccCCChhHHHHHHHHHHHHhcChhcH-HHHHhcC------ChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHH
Q 039015 553 NLLTSSDSEELITDSLAVLATLAEKLDGT-IAILHHG------ALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVV 625 (685)
Q Consensus 553 ~lL~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~g------~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~ 625 (685)
++| .+++..++..|+.+++||+.++++. ..+...+ .++.|+.+++.+ +...+..|+++|.+++... +.+.
T Consensus 613 ~LL-~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~-~~ia 689 (778)
T 3opb_A 613 NLM-LDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTI-PLIA 689 (778)
T ss_dssp HGG-GCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHC-HHHH
T ss_pred HHH-hCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCC-hHHH
Confidence 999 5568899999999999999999875 3554322 378899999988 9999999999999997654 4455
Q ss_pred HHHHhcCCcHHHHHHHHhc--CChHHHHHHHHHHHHHHHhh
Q 039015 626 ALLVKSPSLMGSLYSLLSQ--GSSRASKKASALIRILHEFY 664 (685)
Q Consensus 626 ~~l~~~~g~i~~L~~Ll~~--g~~~~k~~A~~lL~~l~~~~ 664 (685)
+.+.+..++++.|+.++++ .++..+..+..++..|....
T Consensus 690 ~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 690 KELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 6666635899999999999 78899999999999988743
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.3e-19 Score=204.59 Aligned_cols=279 Identities=13% Similarity=0.146 Sum_probs=228.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh-CCHHHHHHhhcC-CCHHHHHHHHHHhhccccCcc---
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV-GCIPSLLKLLSS-KDSSTQENAIAALLNLSKHCK--- 453 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~--- 453 (685)
..++.+++.|.+++.+.+..|++.|..++. +++.|..+++. |+++.|+.+|++ .+..+.-.++.+|.||+.+.+
T Consensus 334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 334 QLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence 367888899988887789999999999997 78999999876 779999999995 788899999999999987432
Q ss_pred ------------------------------------hhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHH
Q 039015 454 ------------------------------------SKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYR 497 (685)
Q Consensus 454 ------------------------------------~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~ 497 (685)
++..+.++|+++.|+.+++++ ++.+++.|+++|.+|+.++++|
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNL-SPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSGGGH
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 345666899999999999999 9999999999999999999999
Q ss_pred HHhhcCCCcHHHHHHHhccCCHH---HHHHHHHHHHHhcCCCCcHHHHHh---cCChHHHHHHhccCCCh----------
Q 039015 498 KLIGENPEAIPALVDMVRDGTDR---SKKNALVAIFGLLMHSGNHWRFLA---AGAVPLLLNLLTSSDSE---------- 561 (685)
Q Consensus 498 ~~i~~~~g~i~~Lv~lL~~~~~~---~~~~A~~aL~nLs~~~~n~~~iv~---~G~v~~Lv~lL~~~~~~---------- 561 (685)
..+.+ .|+++.|+.+|.+++.. ++..|+.||.+|+...+....+-. .|+|++|+.+|..++..
T Consensus 492 ~~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~ 570 (778)
T 3opb_A 492 PQLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570 (778)
T ss_dssp HHHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred HHHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence 99999 99999999999988754 899999999999966554433211 38999999999522211
Q ss_pred ---hHHHHHHHHHHHHhcCh-----hcHHHHHhc-CChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHH-hc
Q 039015 562 ---ELITDSLAVLATLAEKL-----DGTIAILHH-GALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLV-KS 631 (685)
Q Consensus 562 ---~~~~~al~~L~~La~~~-----~~~~~i~~~-g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~-~~ 631 (685)
--.-.|+.+|.|||..+ +.+..|+.. |+++.|..+|.+. +..++..|+.++.+|+.+. +...+.+. .+
T Consensus 571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~ 648 (778)
T 3opb_A 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMSHP-LTIAAKFFNLE 648 (778)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSG-GGTGGGTSCCS
T ss_pred ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCc-HHHHHHHHhhc
Confidence 12668999999999986 347778885 8899999999887 8999999999999999863 21111222 11
Q ss_pred ----CCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015 632 ----PSLMGSLYSLLSQGSSRASKKASALIRILHE 662 (685)
Q Consensus 632 ----~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 662 (685)
.+-++.|+.|+.+++...++.|.++|.++..
T Consensus 649 ~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 649 NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 1137899999999999999999999999964
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.80 E-value=3.3e-18 Score=178.05 Aligned_cols=183 Identities=13% Similarity=0.141 Sum_probs=165.1
Q ss_pred CHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHH-hhcCCCHHHHHHHHHHhhccccCc-chhHHHHhcCcHHHHHH
Q 039015 392 TSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLK-LLSSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIVD 469 (685)
Q Consensus 392 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~-lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~i~~Lv~ 469 (685)
+.+.+..|+..|..++. +.++...|.+.|++|.|+. +|.++++.+++.|+++|.|++.++ ..+..+++.|++++|+.
T Consensus 53 ~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 53 DQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 34678899999999997 6678889999999999999 999999999999999999999876 56889999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhcCC
Q 039015 470 MVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH-SGNHWRFLAAGA 547 (685)
Q Consensus 470 lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~ 547 (685)
+|+++.+.+++.+|+++|.+|+.+. +....+.. .|+++.|+.+|++++..+++.|+++|.+|+.. ++.+..++++|+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 9996447899999999999998754 56667777 89999999999999999999999999999864 568899999999
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015 548 VPLLLNLLTSSDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 548 v~~Lv~lL~~~~~~~~~~~al~~L~~La~~ 577 (685)
++.|+.+| .+++..+++.|+.+|.+|+..
T Consensus 211 i~~Lv~LL-~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 211 VQQLVALV-RTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHH-TSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-cCCChhHHHHHHHHHHHHHhC
Confidence 99999999 566789999999999999987
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.76 E-value=3.1e-17 Score=170.77 Aligned_cols=183 Identities=16% Similarity=0.202 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHH-HhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHH
Q 039015 435 SSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVD-MVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVD 512 (685)
Q Consensus 435 ~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ 512 (685)
.+.+..|+..|.++..+.+|+..+.+.|++++|+. +|+++ +++++..|+++|.+++.++ .++..+.+ .|++|.|+.
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~-~g~l~~Ll~ 131 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHH
Confidence 46788899999999999899999999999999999 99998 9999999999999998765 68888888 899999999
Q ss_pred HhccC-CHHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCC
Q 039015 513 MVRDG-TDRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE-KLDGTIAILHHGA 589 (685)
Q Consensus 513 lL~~~-~~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~ 589 (685)
+|+++ +..+++.|++||.||+.+. +....++++|+++.|+.+| .+++..++..|+++|.+|+. +++.+..+++.|+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 99864 7889999999999999765 4567889999999999999 56788999999999999976 4778899999999
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCc
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGG 621 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~ 621 (685)
++.|+.+|+++ ++.+++.|+.+|.+|+...+
T Consensus 211 i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 211 VQQLVALVRTE-HSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC-ChhHHHHHHHHHHHHHhCCh
Confidence 99999999988 99999999999999998853
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.76 E-value=5.6e-19 Score=148.28 Aligned_cols=73 Identities=32% Similarity=0.444 Sum_probs=69.3
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV 349 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 349 (685)
.++++|.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|++.+...+++||..|+++|+.|+.+++.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999996 78999999999999999999999999999988753
No 40
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.75 E-value=9.5e-19 Score=151.25 Aligned_cols=74 Identities=31% Similarity=0.438 Sum_probs=70.0
Q ss_pred CCCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCc
Q 039015 275 GLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV 349 (685)
Q Consensus 275 ~~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 349 (685)
..+|++|.||||+++|.|||+++|||+||+.||.+||.. +.+||.|++++...+++||..|+++|+.|+..|+.
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 378999999999999999999999999999999999985 78999999999999999999999999999998864
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.75 E-value=1.4e-18 Score=149.71 Aligned_cols=74 Identities=30% Similarity=0.399 Sum_probs=70.6
Q ss_pred CCCCCccCcCccccCCCceeccCc-ccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCcc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTG-HTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVS 350 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cg-htfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~~ 350 (685)
.+|++|.||||+++|.|||+++|| |+|||.||++||.. +.+||.|++++...+++||..|+++|+.|+..++..
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 789999999999999999999999 99999999999987 789999999999999999999999999999998864
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.74 E-value=3.5e-18 Score=162.05 Aligned_cols=76 Identities=30% Similarity=0.458 Sum_probs=71.3
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCccc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSI 351 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~~~ 351 (685)
.+|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|+.+++..+++||..|+++|+.|+..|++.+
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~~ 177 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVE 177 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTCC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCcC
Confidence 6799999999999999999999999999999999998754589999999999999999999999999999999754
No 43
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.4e-18 Score=170.33 Aligned_cols=215 Identities=14% Similarity=0.198 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcc----CCccccCcHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhcccCCCCCCH
Q 039015 118 DRVSNQLRLFIRAIGTALDVL----PLAAIDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDK 193 (685)
Q Consensus 118 ~~i~~~f~~~~~~l~~~L~~l----P~~~~~~s~~v~e~v~~l~~q~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (685)
--++..++.+.++|..+|.+| +....++++.|++. ....+++..-+.+.+..+..+.....++.++.+.....+.
T Consensus 28 ~d~s~~~~~~~~q~~~~l~~~~~~~~~~~~~~~~~v~~l-~~~y~~l~~~~~~~~~~~~~~~~~K~~yk~~~d~~~~~~~ 106 (267)
T 3htk_C 28 RDLSNIYQQCYKQIDETINQLVDSTSPSTIGIEEQVADI-TSTYKLLSTYESESNSFDEHIKDLKKNFKQSSDACPQIDL 106 (267)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCCCCSSCSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 345556666667777777766 33445577777663 4445566666666667777777777778777788888899
Q ss_pred HHHH-HHHHhcCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhhhhhhccccchhhhhhhhhccCCC
Q 039015 194 SEVK-RVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDLVDNEASQQVSKKCCNNM 272 (685)
Q Consensus 194 ~~l~-~~~~~l~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (685)
+.|. +..+++.+++.+.+..+..... ....-+.......++.+++.+......+.+...+.+ .++.
T Consensus 107 ~twd~y~~~e~~ap~l~~~~~~~~~~~-----~~~~~~~~~~~~~lk~~~~i~~~P~~~lPd~~~~~d--------DDDI 173 (267)
T 3htk_C 107 STWDKYRTGELTAPKLSELYLNMPTPE-----PATMVNNTDTLKILKVLPYIWNDPTCVIPDLQNPAD--------EDDL 173 (267)
T ss_dssp THHHHHHHTSSCCCCHHHHHHTCCCCS-----CCSCCCCCHHHHHHHHHHHHHHCTTBCCCCCSSTTC--------SSCC
T ss_pred HHHHHHhcCCcCCchHHHHHHhccccC-----cccccccchHHHHHHHccccccCCCCCCCCCCCCCC--------Cccc
Confidence 9999 5557799999876655321100 000011234556667777777666655543211101 1111
Q ss_pred CCCCCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHc-CCCCCCC--CCccccCCCCcccHHHHhhHHHHHHh
Q 039015 273 LGGLTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRA-GNSTCPK--TGERLQSKELLVNLVLKRIIQDWSVD 346 (685)
Q Consensus 273 ~~~~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~-~~~~CP~--c~~~l~~~~l~~n~~l~~~i~~~~~~ 346 (685)
.-.....+|.||||+++|.|||+. .|||+||+.||.+||.. +...||. |++.+...++.||..|+++++.|..+
T Consensus 174 ~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 174 QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp CCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred eecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 122567889999999999999985 99999999999999986 4578999 99999999999999999999999765
No 44
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.72 E-value=4.1e-18 Score=140.92 Aligned_cols=74 Identities=54% Similarity=0.939 Sum_probs=70.8
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV 349 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 349 (685)
.++++|.||||+++|.+||+++|||+||+.||.+|+..++.+||.|++.+...++.||..++++|+.|.++|++
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 67889999999999999999999999999999999987788999999999988999999999999999999986
No 45
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.68 E-value=4.7e-16 Score=160.94 Aligned_cols=78 Identities=29% Similarity=0.444 Sum_probs=72.6
Q ss_pred CCCCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCccc
Q 039015 274 GGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSI 351 (685)
Q Consensus 274 ~~~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~~~ 351 (685)
...+|++|.||||+++|.|||+++||||||+.||.+|+..++.+||.|+.+++..+++||..|+++|+.|+..|++.+
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~ 279 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 279 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCC
Confidence 347899999999999999999999999999999999999766679999999998899999999999999999998754
No 46
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-16 Score=136.33 Aligned_cols=74 Identities=28% Similarity=0.583 Sum_probs=65.7
Q ss_pred CCCCCccCcCccccCCCceecc-CcccccHHHHHHHHHcC-----CCCCCC--CCcc-ccCCCCcccHHHHhhHHHHHHh
Q 039015 276 LTPDDFTCPISLEIMKDPVTLS-TGHTYDRASILKWFRAG-----NSTCPK--TGER-LQSKELLVNLVLKRIIQDWSVD 346 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~~-----~~~CP~--c~~~-l~~~~l~~n~~l~~~i~~~~~~ 346 (685)
..+++|.||||+++|.|||+++ |||+||+.||.+||..+ ..+||. |+.. +...+++||..|+++|..|+..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3467899999999999999996 99999999999999863 469999 6655 8888999999999999999988
Q ss_pred cCc
Q 039015 347 NGV 349 (685)
Q Consensus 347 ~~~ 349 (685)
++.
T Consensus 83 ~~r 85 (94)
T 2yu4_A 83 RHR 85 (94)
T ss_dssp CCS
T ss_pred hcc
Confidence 774
No 47
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.56 E-value=5.3e-15 Score=126.25 Aligned_cols=74 Identities=24% Similarity=0.496 Sum_probs=67.4
Q ss_pred CCCCCccCcCccccCCCceecc-CcccccHHHHHHHHHc-CCCCCCCCCccc-cCCCCcccHHHHhhHHHHHHhcCc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLS-TGHTYDRASILKWFRA-GNSTCPKTGERL-QSKELLVNLVLKRIIQDWSVDNGV 349 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~-~~~~CP~c~~~l-~~~~l~~n~~l~~~i~~~~~~~~~ 349 (685)
.+++++.||||+++|.+||+++ |||+||+.||..|+.. +...||.|+..+ ....+.+|..++++++.|...++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 6789999999999999999999 9999999999999975 457999999997 566899999999999999988764
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.47 E-value=5.9e-12 Score=140.38 Aligned_cols=278 Identities=13% Similarity=0.196 Sum_probs=216.2
Q ss_pred hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccCcch
Q 039015 378 KLLANFISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--KDSSTQENAIAALLNLSKHCKS 454 (685)
Q Consensus 378 ~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~ 454 (685)
..+|+.|...+++ .-.+.|+.|+..|+.+++ ++|..++ ++++|.|+..|.. .|.++...++.+|.++...++.
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk---~y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSK---KYRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT---TTTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHH---HhHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 3479999999964 467899999999999986 5666665 5669999999976 6889999999999887543321
Q ss_pred ------------------hHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHH
Q 039015 455 ------------------KSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDM 513 (685)
Q Consensus 455 ------------------k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~l 513 (685)
.+.+. +.+.|+.|+.+|+.. +..+|.+++..|..|+.+. .+++.|...+++|+.||.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 12232 578999999999988 9999999999999998765 3788888768999999999
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCcHHHHHh-cCChHHHHHHhccCC---ChhHHHHHHHHHHHHhcC-hhcHHHHHhcC
Q 039015 514 VRDGTDRSKKNALVAIFGLLMHSGNHWRFLA-AGAVPLLLNLLTSSD---SEELITDSLAVLATLAEK-LDGTIAILHHG 588 (685)
Q Consensus 514 L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~La~~-~~~~~~i~~~g 588 (685)
|.+.....+..|+..|.+|+.+..+.++++. .|+++.|++++.... ...+...|+.+|.||... +.++..+.+.|
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 9998899999999999999998887777776 599999999996432 346789999999999885 66889999999
Q ss_pred ChHHHHHHhhcCCC-----hhHHHH---HHHHHHHHhccCc-----HHHHHHHHhcCCcHHHHHHHHhcC--ChHHHHHH
Q 039015 589 ALDMIMKILDSCTS-----RAGKEY---CVSLLLALCINGG-----ANVVALLVKSPSLMGSLYSLLSQG--SSRASKKA 653 (685)
Q Consensus 589 ~v~~Lv~lL~~~~s-----~~~~e~---a~~~L~~L~~~~~-----~~~~~~l~~~~g~i~~L~~Ll~~g--~~~~k~~A 653 (685)
.++.|..++..+.. +....+ ++.++..|+..++ ...+..+.+ .|+++.|+.++... ...++..|
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~A 333 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTET 333 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHH
Confidence 99999998875411 112233 6667777776543 234555555 89999999998765 45566555
Q ss_pred HHHHHHHH
Q 039015 654 SALIRILH 661 (685)
Q Consensus 654 ~~lL~~l~ 661 (685)
...+..+.
T Consensus 334 l~tla~~i 341 (651)
T 3grl_A 334 INTVSEVI 341 (651)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.45 E-value=3.3e-14 Score=128.42 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=62.9
Q ss_pred CCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccC-CCCcccHHHHhhHHHHHH
Q 039015 277 TPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS-KELLVNLVLKRIIQDWSV 345 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~-~~l~~n~~l~~~i~~~~~ 345 (685)
+++++.||||+++|.+||+++|||+||+.||..|+..+...||.|+..+.. ..+.+|..++++++.|..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 456799999999999999999999999999999999767799999999987 689999999999988854
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=128.96 Aligned_cols=69 Identities=20% Similarity=0.353 Sum_probs=63.4
Q ss_pred CCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC-CCcccHHHHhhHHHHHH
Q 039015 277 TPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK-ELLVNLVLKRIIQDWSV 345 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~-~l~~n~~l~~~i~~~~~ 345 (685)
+++++.||||+++|.+||+++|||+||+.||..|+..+...||.|+..+... .+.+|..++++++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4567999999999999999999999999999999998677999999999887 89999999999998853
No 51
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.39 E-value=1.1e-13 Score=107.68 Aligned_cols=54 Identities=19% Similarity=0.382 Sum_probs=49.8
Q ss_pred CccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccH
Q 039015 280 DFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNL 334 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~ 334 (685)
.|.||||+++|.|||++ +|||+|||.||++|+.. +.+||.|++++...+++||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 58999999999999999 99999999999999987 56799999999999999875
No 52
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.38 E-value=8.1e-13 Score=152.39 Aligned_cols=73 Identities=29% Similarity=0.377 Sum_probs=69.4
Q ss_pred CCCCCccCcCccccCCCceeccCc-ccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcCc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTG-HTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV 349 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cg-htfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 349 (685)
++|++|.|||++++|.|||++++| +||+|.+|++|+.. +.+||.++++++..+++||+.|++.|++|+.+++.
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 789999999999999999999998 69999999999987 78999999999999999999999999999999764
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.37 E-value=3.2e-13 Score=116.78 Aligned_cols=71 Identities=18% Similarity=0.376 Sum_probs=64.8
Q ss_pred CCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcC
Q 039015 277 TPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNG 348 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~ 348 (685)
+++++.||||++.+.+|+++ +|||+||+.||.+|+.. ..+||.|+..+...++.+|..++++++.|.+...
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 45679999999999999998 89999999999999986 6899999999988889999999999999977643
No 54
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.34 E-value=2.8e-13 Score=117.34 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=64.2
Q ss_pred CCCCCccCcCccccCCCcee-ccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcC
Q 039015 276 LTPDDFTCPISLEIMKDPVT-LSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNG 348 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~-~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~ 348 (685)
.+.+++.||||++++.+|++ ++|||+||+.||.+|+..+...||.|+..+...++.+|..+.++++...+...
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHCC
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHHH
Confidence 34567999999999999999 89999999999999999855899999999998899999999888877755543
No 55
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.32 E-value=7e-13 Score=116.54 Aligned_cols=68 Identities=13% Similarity=0.319 Sum_probs=61.2
Q ss_pred CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCC----CCcccHHHHhhHHHHH
Q 039015 276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSK----ELLVNLVLKRIIQDWS 344 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~----~l~~n~~l~~~i~~~~ 344 (685)
.+++++.||||++.+.+|+++ +|||+||+.||..|+.. ...||.|+..+... .+.+|..+.+++..|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 356789999999999999998 99999999999999987 58999999998865 6889999999998874
No 56
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.31 E-value=1.8e-12 Score=119.14 Aligned_cols=64 Identities=27% Similarity=0.514 Sum_probs=53.1
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHH
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWS 344 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~ 344 (685)
.+++.||||++.|.+||+++|||+||..||.+|+.. +.+||.|++++... .+|..+...+..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 346899999999999999999999999999999987 78999999998654 34566666665554
No 57
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=3.9e-13 Score=112.55 Aligned_cols=65 Identities=31% Similarity=0.599 Sum_probs=58.4
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc-----CCCCCCCCCccccCCCCcccHHHHhhH
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA-----GNSTCPKTGERLQSKELLVNLVLKRII 340 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~-----~~~~CP~c~~~l~~~~l~~n~~l~~~i 340 (685)
.+.+++.||||++.+.+|++++|||+||+.||..|+.. +...||.|+..+...++.+|..+++++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 67889999999999999999999999999999999987 367999999999988899987776554
No 58
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.31 E-value=8.4e-14 Score=115.10 Aligned_cols=65 Identities=32% Similarity=0.578 Sum_probs=58.0
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcC------CCCCCCCCccccCCCCcccHHHHhhH
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAG------NSTCPKTGERLQSKELLVNLVLKRII 340 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~------~~~CP~c~~~l~~~~l~~n~~l~~~i 340 (685)
.+++++.||||++.+.+|++++|||+||+.||.+|+... ...||.|+..+...++.+|..+++++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 577899999999999999999999999999999999863 67999999999888888988776554
No 59
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=108.17 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=53.7
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHh
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKR 338 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~ 338 (685)
...+.+.||||++.+.+|++++|||+||+.||.+|+.. ...||.|++.+. ..+.+|..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~ 71 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMA 71 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHH
Confidence 55678999999999999999999999999999999987 789999999997 57888855543
No 60
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.29 E-value=1.3e-12 Score=116.70 Aligned_cols=68 Identities=28% Similarity=0.506 Sum_probs=62.7
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHH
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDW 343 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~ 343 (685)
.+++++.||||++.+.+|++++|||+||+.||.+|+..+..+||.|+..+....+.+|..+.+.|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 67889999999999999999999999999999999987666999999999988899999998888765
No 61
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.8e-13 Score=111.48 Aligned_cols=65 Identities=28% Similarity=0.580 Sum_probs=58.4
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc-----CCCCCCCCCccccCCCCcccHHHHhhH
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA-----GNSTCPKTGERLQSKELLVNLVLKRII 340 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~-----~~~~CP~c~~~l~~~~l~~n~~l~~~i 340 (685)
.+.+++.||||++.+.+|++++|||+||+.||..|+.. +...||.|+..+...++.+|..+++++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 67889999999999999999999999999999999976 477999999999988899988776554
No 62
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.28 E-value=4.1e-10 Score=125.60 Aligned_cols=280 Identities=13% Similarity=0.112 Sum_probs=205.3
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHHhhcCCc-----------------hhh-HHHhhCCHHHHHHhhcCCCHHHH
Q 039015 379 LLANFISDRLLE--GTSEEKNKVAYEVRLLTKSSIF-----------------NRS-CLVEVGCIPSLLKLLSSKDSSTQ 438 (685)
Q Consensus 379 ~~i~~Lv~~L~s--~~~~~~~~a~~~L~~La~~~~~-----------------~r~-~i~~~G~ip~Lv~lL~s~~~~~~ 438 (685)
..++.|+..|+. .|.+....++..|.++...+.+ +.. .+.+.+.|+.|+.+|.+.+..++
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR 139 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVR 139 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHH
Confidence 347788888865 4777888889998776543332 111 23356889999999999999999
Q ss_pred HHHHHHhhccccCcc--hhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc
Q 039015 439 ENAIAALLNLSKHCK--SKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR 515 (685)
Q Consensus 439 ~~A~~aL~nLs~~~~--~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~ 515 (685)
.+++..|..|+.+.. .++.|. ..++++.|+.+|+.. ...+|-.|+.+|.+|+.++....++..-.|+++.|+.+++
T Consensus 140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 999999999987664 488888 569999999999988 8899999999999999877544444443799999999997
Q ss_pred cCC----HHHHHHHHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhccCCCh-----hHHHH---HHHHHHHHhcC-----
Q 039015 516 DGT----DRSKKNALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLTSSDSE-----ELITD---SLAVLATLAEK----- 577 (685)
Q Consensus 516 ~~~----~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~-----~~~~~---al~~L~~La~~----- 577 (685)
.+. ..+..+++.+|.||..+.. |+..+.+.|.++.|..+|..+... ....+ ++.++..|...
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 643 3678899999999998764 999999999999999999533221 12333 66677777553
Q ss_pred --hhcHHHHHhcCChHHHHHHhhc-CCChhHHHHHHHHHHHHhccCcHHHHHHHHhc--------CCcHHHHHHHHhcC-
Q 039015 578 --LDGTIAILHHGALDMIMKILDS-CTSRAGKEYCVSLLLALCINGGANVVALLVKS--------PSLMGSLYSLLSQG- 645 (685)
Q Consensus 578 --~~~~~~i~~~g~v~~Lv~lL~~-~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~--------~g~i~~L~~Ll~~g- 645 (685)
..++.++.+.|+++.|++++.. +....++..|+.++..++.+++ ..+..+.+. +.++..|+.++.+.
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~-~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~ 377 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ-VNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ 377 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence 2467789999999999996654 3356788999999999998773 344444431 12444455545443
Q ss_pred ChHHHHHHHHHHHHH
Q 039015 646 SSRASKKASALIRIL 660 (685)
Q Consensus 646 ~~~~k~~A~~lL~~l 660 (685)
....|-.|...++.+
T Consensus 378 ~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 378 PFVLRCAVLYCFQCF 392 (651)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 345565555555544
No 63
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.28 E-value=6.4e-13 Score=118.20 Aligned_cols=69 Identities=30% Similarity=0.453 Sum_probs=61.8
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccC-------CCCcccHHHHhhHHHHH
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS-------KELLVNLVLKRIIQDWS 344 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~-------~~l~~n~~l~~~i~~~~ 344 (685)
...+++.||||++++.+|++++|||+||+.||.+|+..+...||.|++.+.. ..+.+|..+..++..|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 5567899999999999999999999999999999998778899999999863 56778999999998875
No 64
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.27 E-value=1.5e-12 Score=123.53 Aligned_cols=71 Identities=24% Similarity=0.464 Sum_probs=62.5
Q ss_pred CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccC-CCCcccHHHHhhHHHHHHh
Q 039015 276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQS-KELLVNLVLKRIIQDWSVD 346 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~-~~l~~n~~l~~~i~~~~~~ 346 (685)
.+.+++.||||++.+.+|+++ +|||+||+.||.+|+..+...||.|+..+.. ..+.+|..+.++|..|...
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 456789999999999999988 9999999999999999878899999999853 4689999999999988443
No 65
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=8.3e-13 Score=117.81 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=62.8
Q ss_pred CCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHHHHhcC
Q 039015 277 TPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNG 348 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~ 348 (685)
+.+++.||||+++|.+||++ +|||+||+.||..|+. ..||.|+..+...++.+|..+.+++..+.....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence 45679999999999999999 9999999999999987 689999999988899999999999998876644
No 66
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=6.3e-12 Score=101.80 Aligned_cols=57 Identities=21% Similarity=0.359 Sum_probs=51.9
Q ss_pred CCCCCccCcCccccCCCceec-cCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015 276 LTPDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN 333 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n 333 (685)
.+++++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.|++.+...++.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 678899999999999999997 99999999999999987 7899999999987776655
No 67
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.6e-12 Score=100.71 Aligned_cols=54 Identities=13% Similarity=0.358 Sum_probs=49.3
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKE 329 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~ 329 (685)
.+++++.||||++.+.+|++++|||+||+.||.+|+..+...||.|++.+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 678899999999999999999999999999999999766789999999987654
No 68
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.24 E-value=6.5e-12 Score=102.26 Aligned_cols=58 Identities=28% Similarity=0.435 Sum_probs=49.2
Q ss_pred CCCCCccCcCccccCCCceecc-CcccccHHHHHHHHHc-CCCCCCCCCccccC-CCCccc
Q 039015 276 LTPDDFTCPISLEIMKDPVTLS-TGHTYDRASILKWFRA-GNSTCPKTGERLQS-KELLVN 333 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~-cghtfcr~ci~~~~~~-~~~~CP~c~~~l~~-~~l~~n 333 (685)
.+++++.||||++.|.+||+++ |||+||+.||.+|+.. +...||.|++.+.. ..+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 6788999999999999999999 9999999999999985 34799999997543 334444
No 69
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=3.4e-12 Score=112.83 Aligned_cols=69 Identities=22% Similarity=0.464 Sum_probs=59.1
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHHHcC--CCCCCCCCccccCCCCcccHHHHhhHHHHHHh
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAG--NSTCPKTGERLQSKELLVNLVLKRIIQDWSVD 346 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~--~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~ 346 (685)
.+.+.||||++.+.+|++++|||+||+.||.+|+..+ ...||.|+..+...++.+|..+.++++.+...
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999853 46899999999988888887777777666543
No 70
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.19 E-value=6.3e-10 Score=109.21 Aligned_cols=187 Identities=16% Similarity=0.154 Sum_probs=156.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
..++.|+..|.++++.+|..|+..|..+.. .+++|.|+.+|.+++..++..|+.+|..+.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------- 78 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 78 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 358899999999999999999999887642 367999999999999999999999998865
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN 538 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 538 (685)
..++++.|+..|.+. ++.+|..|+.+|..+.. .++++.|+.+|.++++.++..|+.+|.++..
T Consensus 79 -~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 79 -DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp -CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred -CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 356899999999988 99999999999988742 4689999999999999999999999999842
Q ss_pred HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015 539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI 618 (685)
Q Consensus 539 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~ 618 (685)
..+++.|+.+| .+++..++..|+.+|..+.. ...++.|..+++++ ++.++..|+.+|..+..
T Consensus 142 ------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 142 ------ERAVEPLIKAL-KDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLETHKS 203 (211)
T ss_dssp ------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC---
T ss_pred ------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHhcCC
Confidence 35789999999 67889999999999999843 22467788888887 99999999999998887
Q ss_pred cC
Q 039015 619 NG 620 (685)
Q Consensus 619 ~~ 620 (685)
..
T Consensus 204 ~~ 205 (211)
T 3ltm_A 204 FN 205 (211)
T ss_dssp --
T ss_pred CC
Confidence 64
No 71
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=100.11 Aligned_cols=55 Identities=25% Similarity=0.546 Sum_probs=49.1
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc--CCCCCCCCCccccCCCC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA--GNSTCPKTGERLQSKEL 330 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~--~~~~CP~c~~~l~~~~l 330 (685)
.+++++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|++.+...++
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 67889999999999999999999999999999999973 46799999999876543
No 72
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=1.2e-11 Score=97.99 Aligned_cols=55 Identities=27% Similarity=0.515 Sum_probs=49.1
Q ss_pred CCccCcCccc-cCCCc----eeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015 279 DDFTCPISLE-IMKDP----VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN 333 (685)
Q Consensus 279 ~~~~CpIc~~-~m~dP----v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n 333 (685)
+++.||||++ .+.+| ++++|||+||+.||.+|+..+...||.|+..+...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 4689999999 99999 5679999999999999998777899999999988777665
No 73
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.17 E-value=9.2e-10 Score=108.03 Aligned_cols=191 Identities=17% Similarity=0.176 Sum_probs=157.4
Q ss_pred hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHH
Q 039015 420 VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKL 499 (685)
Q Consensus 420 ~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 499 (685)
.+.++.|+.+|.+++..++..|+.+|..+.. .++++.|+..|.++ +..+|..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDE-DAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-CHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCC-CHHHHHHHHHHHHhhC--------
Confidence 5679999999999999999999999987642 57899999999988 9999999999998764
Q ss_pred hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015 500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD 579 (685)
Q Consensus 500 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~ 579 (685)
. .++++.|+.+|.++++.++..|+.+|.++.. .++++.|+.+| .+++..++..|+.+|..+..
T Consensus 79 --~-~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 79 --D-ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp --C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC---
T ss_pred --C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC---
Confidence 2 5689999999999999999999999998842 35789999999 77889999999999998843
Q ss_pred cHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 039015 580 GTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRI 659 (685)
Q Consensus 580 ~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~ 659 (685)
...++.|+.++++. ++.++..|+.+|..+.. ..+++.|..++.++++.++..|...|..
T Consensus 142 -------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-------------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 23588899999887 99999999999988843 1236678888999999999999999998
Q ss_pred HHHhhccc
Q 039015 660 LHEFYERH 667 (685)
Q Consensus 660 l~~~~~~~ 667 (685)
+.......
T Consensus 201 ~~~~~~~~ 208 (211)
T 3ltm_A 201 HKSFNHHH 208 (211)
T ss_dssp --------
T ss_pred cCCCCCCC
Confidence 87765443
No 74
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.16 E-value=1.3e-09 Score=111.89 Aligned_cols=225 Identities=12% Similarity=0.055 Sum_probs=163.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
...++.|+..|.++++.+|..|++.|..+.. .++++.|+.+|.++++.++..|+.+|..+...+..-.
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~- 89 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED- 89 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH-
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch-
Confidence 3468999999999999999999999988751 3568999999999999999999999988864432211
Q ss_pred HHhcCcHHHHHH-HhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015 458 VVESGGLDFIVD-MVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS 536 (685)
Q Consensus 458 i~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 536 (685)
..++.|.. +++.. +..+|..|+.+|.++...+. ... ..+++.|+.++.++++.++..|+.+|.++..
T Consensus 90 ----~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~----~~~-~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-- 157 (280)
T 1oyz_A 90 ----NVFNILNNMALNDK-SACVRATAIESTAQRCKKNP----IYS-PKIVEQSQITAFDKSTNVRRATAFAISVIND-- 157 (280)
T ss_dssp ----HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCG----GGH-HHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred ----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCC----ccc-HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--
Confidence 12334442 34556 89999999999998863221 011 3468899999999999999999999988743
Q ss_pred CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015 537 GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL 616 (685)
Q Consensus 537 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L 616 (685)
.++++.|+.+| .+++..++..|+.+|..+.... ...++.|+.++++. ++.++..|+.+|..+
T Consensus 158 --------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 158 --------KATIPLLINLL-KDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDK-NEEVRIEAIIGLSYR 219 (280)
T ss_dssp ---------CCHHHHHHHH-TCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCS-CHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHH-cCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCC-CHHHHHHHHHHHHHh
Confidence 35899999999 6778889999999998874321 12367788888877 889999999998887
Q ss_pred hccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 039015 617 CINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRI 659 (685)
Q Consensus 617 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~ 659 (685)
.. ..+++.|..++.+++ .+..|...|..
T Consensus 220 ~~-------------~~~~~~L~~~l~d~~--vr~~a~~aL~~ 247 (280)
T 1oyz_A 220 KD-------------KRVLSVLCDELKKNT--VYDDIIEAAGE 247 (280)
T ss_dssp TC-------------GGGHHHHHHHHTSSS--CCHHHHHHHHH
T ss_pred CC-------------HhhHHHHHHHhcCcc--HHHHHHHHHHh
Confidence 52 233556666666543 34444444433
No 75
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.6e-11 Score=95.35 Aligned_cols=46 Identities=30% Similarity=0.611 Sum_probs=42.5
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc--CCCCCCCC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA--GNSTCPKT 321 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~--~~~~CP~c 321 (685)
.+++++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 67889999999999999999999999999999999985 46789987
No 76
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.14 E-value=1.6e-11 Score=98.96 Aligned_cols=57 Identities=18% Similarity=0.405 Sum_probs=51.3
Q ss_pred CCCCCccCcCccccCCCc-------eeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015 276 LTPDDFTCPISLEIMKDP-------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN 333 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dP-------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n 333 (685)
...+++.||||++.+.+| ++++|||+||+.||.+|+.. ..+||.|+..+...++.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence 456789999999999998 88899999999999999987 6799999999988777765
No 77
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.14 E-value=2e-11 Score=116.41 Aligned_cols=68 Identities=28% Similarity=0.506 Sum_probs=62.3
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHHHHhhHHHH
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDW 343 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~ 343 (685)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+..+...++.+|..+.+.|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 67889999999999999999999999999999999987667999999999988899999888887654
No 78
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.13 E-value=6.9e-12 Score=115.34 Aligned_cols=67 Identities=13% Similarity=0.300 Sum_probs=57.1
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcccc---------CCCCcccHHHHhhHHH
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ---------SKELLVNLVLKRIIQD 342 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~---------~~~l~~n~~l~~~i~~ 342 (685)
.++++|.||||++++.+||+++|||+||+.||.+|+..+...||.|+..+. ...+.+|..+++.|..
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 678899999999999999999999999999999999886779999998653 2245588888777753
No 79
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.13 E-value=2.7e-11 Score=107.81 Aligned_cols=68 Identities=24% Similarity=0.340 Sum_probs=57.0
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCc-ccHHHHhhHHHH
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELL-VNLVLKRIIQDW 343 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~-~n~~l~~~i~~~ 343 (685)
.+++++.||||++.+.+|++++|||+||+.||.+|+..+..+||.|+..+...++. ++..+.+++..+
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 34567999999999999999999999999999999997678999999999877654 456666666443
No 80
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.13 E-value=2.1e-09 Score=104.62 Aligned_cols=184 Identities=16% Similarity=0.170 Sum_probs=156.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
...+.+++.|.++++.+|..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 357889999999999999999999887642 357899999999999999999999998764
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN 538 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 538 (685)
..++++.|+..|.+. ++.+|..|+.+|..+.. .++++.|+.+|.++++.++..|+.+|.++.
T Consensus 74 -~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----- 135 (201)
T 3ltj_A 74 -DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG----- 135 (201)
T ss_dssp -CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-----
T ss_pred -CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----
Confidence 246899999999988 99999999999988632 458999999999999999999999999884
Q ss_pred HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 039015 539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALC 617 (685)
Q Consensus 539 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~ 617 (685)
..++++.|+.+| .+++..++..|+.+|..+.. ..+++.|..++++. ++.++..|+.+|..+-
T Consensus 136 -----~~~~~~~L~~~l-~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 -----DERAVEPLIKAL-KDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLETHK 197 (201)
T ss_dssp -----CGGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHCC
T ss_pred -----CHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 246889999999 67788999999999998832 12467888888887 9999999999987764
No 81
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.09 E-value=3.5e-09 Score=103.01 Aligned_cols=186 Identities=17% Similarity=0.164 Sum_probs=156.4
Q ss_pred hhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHH
Q 039015 419 EVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRK 498 (685)
Q Consensus 419 ~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 498 (685)
..+..+.++.+|.++++.++..|+.+|..+.. .++++.|+..|.++ +..+|..|+.+|..+.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~------- 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDE-DAWVRRAAADALGQIG------- 73 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC-------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCC-CHHHHHHHHHHHHhhC-------
Confidence 34668899999999999999999999987652 47899999999988 9999999999998763
Q ss_pred HhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCh
Q 039015 499 LIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL 578 (685)
Q Consensus 499 ~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~ 578 (685)
. .++++.|+.+|.++++.++..|+.+|.++.. ..+++.|+.+| .+++..++..|+.+|..+..
T Consensus 74 ---~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 74 ---D-ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp ---C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC--
T ss_pred ---C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC--
Confidence 2 4689999999999999999999999998742 35789999999 67889999999999998853
Q ss_pred hcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 039015 579 DGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIR 658 (685)
Q Consensus 579 ~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~ 658 (685)
.+.++.|+.++.+. ++.++..|+.+|..+.. + .+++.|..++.++++.++..|...|.
T Consensus 137 --------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~---~----------~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG---E----------RVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS---H----------HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc---h----------hHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34688899999887 99999999999998832 2 23667888889999999999988887
Q ss_pred HHH
Q 039015 659 ILH 661 (685)
Q Consensus 659 ~l~ 661 (685)
.+.
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 654
No 82
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.1e-11 Score=95.26 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=46.8
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
...+++.|+||++.+.+|++++|||+||+.||.+|+.. ..+||.|++.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence 45678999999999999999999999999999999987 68999999988643
No 83
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=2e-10 Score=96.67 Aligned_cols=53 Identities=25% Similarity=0.453 Sum_probs=47.8
Q ss_pred CCCCCccCcCccccCCC----ceeccCcccccHHHHHHHHHcC--CCCCCCCCccccCC
Q 039015 276 LTPDDFTCPISLEIMKD----PVTLSTGHTYDRASILKWFRAG--NSTCPKTGERLQSK 328 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~d----Pv~~~cghtfcr~ci~~~~~~~--~~~CP~c~~~l~~~ 328 (685)
.+.+.+.||||++.+.+ |++++|||+||+.||.+|+... ...||.|++.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 67888999999999999 9999999999999999999873 57999999987654
No 84
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1e-10 Score=90.22 Aligned_cols=46 Identities=28% Similarity=0.703 Sum_probs=42.1
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHc--CCCCCCCC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRA--GNSTCPKT 321 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~--~~~~CP~c 321 (685)
.+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 56788999999999999999999999999999999864 57899987
No 85
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.04 E-value=5.2e-11 Score=93.76 Aligned_cols=54 Identities=19% Similarity=0.416 Sum_probs=48.4
Q ss_pred CCccCcCccccCCCc-------eeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015 279 DDFTCPISLEIMKDP-------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN 333 (685)
Q Consensus 279 ~~~~CpIc~~~m~dP-------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n 333 (685)
+++.||||++.+.+| +.++|||+||+.||.+|+.. +.+||.|+..+...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 468999999999998 78899999999999999997 7899999999987776654
No 86
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.5e-10 Score=92.67 Aligned_cols=51 Identities=18% Similarity=0.471 Sum_probs=46.6
Q ss_pred CCCCCccCcCccccCCCc-------eeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 276 LTPDDFTCPISLEIMKDP-------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dP-------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
...+.+.|+||++.+.+| ++++|||+||..||.+|+.. ..+||.|++.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 567889999999999998 88999999999999999997 7899999998764
No 87
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.99 E-value=3.1e-10 Score=93.19 Aligned_cols=57 Identities=19% Similarity=0.445 Sum_probs=49.1
Q ss_pred CCCCCccCcCccccCCCc---eeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015 276 LTPDDFTCPISLEIMKDP---VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN 333 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dP---v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n 333 (685)
...+++.|+||++.|.+| ++++|||.||+.||.+|+.. ..+||.|++.+....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 556789999999999877 44699999999999999986 6899999999987776665
No 88
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.97 E-value=4.6e-10 Score=91.87 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=46.9
Q ss_pred CCCCCccCcCccccC--CCceecc--CcccccHHHHHHHHHcCCCCCCCCCccccCCCC
Q 039015 276 LTPDDFTCPISLEIM--KDPVTLS--TGHTYDRASILKWFRAGNSTCPKTGERLQSKEL 330 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m--~dPv~~~--cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l 330 (685)
...+++.||||++.+ .|+++.+ |||+||+.|+.+|+..+...||.||+.+....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 567889999999988 4666666 999999999999997778899999999876543
No 89
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.92 E-value=1.1e-08 Score=121.91 Aligned_cols=271 Identities=14% Similarity=0.106 Sum_probs=195.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHH-------hhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCc
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLV-------EVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHC 452 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~-------~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~ 452 (685)
.++.|++.+.+++...+..|+..|..+++..+. .+. -.+.+|.++.++.+++..++..|+++|.++....
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~---~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~ 205 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE---ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR 205 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT---HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH---HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 588899999999999999999999999975432 222 1346888888899999999999999999887654
Q ss_pred chhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh--HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 039015 453 KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE--YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF 530 (685)
Q Consensus 453 ~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 530 (685)
.....-.-.+.++.+...+..+ +.++|..|+.+|..|+.... ....+ .+.++.++.++.+.++.++..|+.++.
T Consensus 206 ~~~~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l---~~l~~~l~~~~~~~~~~vr~~a~e~l~ 281 (852)
T 4fdd_A 206 TQALMLHIDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHM---HNIVEYMLQRTQDQDENVALEACEFWL 281 (852)
T ss_dssp CHHHHTSHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGH---HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHH---HHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 3211111246788888888888 89999999999999976432 12222 247888888888888999999999999
Q ss_pred HhcCCCCcHHHHHh--cCChHHHHHHhc----------cC-----------CChhHHHHHHHHHHHHhcChhcHHHHHhc
Q 039015 531 GLLMHSGNHWRFLA--AGAVPLLLNLLT----------SS-----------DSEELITDSLAVLATLAEKLDGTIAILHH 587 (685)
Q Consensus 531 nLs~~~~n~~~iv~--~G~v~~Lv~lL~----------~~-----------~~~~~~~~al~~L~~La~~~~~~~~i~~~ 587 (685)
+++.....+..+.. ...+|.|+..+. .+ .+-.++..|..+|..++.... ..+..
T Consensus 282 ~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~- 358 (852)
T 4fdd_A 282 TLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP- 358 (852)
T ss_dssp HHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH-
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH-
Confidence 99876543332211 134566666661 22 112357778888888876422 11221
Q ss_pred CChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015 588 GALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 588 g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 664 (685)
..++.+.+.+.+. ++..++.|+.+|..++...++.... .. .++++.|..++.+.++.++..|.+.+..+..+.
T Consensus 359 ~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~-~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 359 HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP-YL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG-GH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH-HH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 2356677777776 8999999999999999876543322 22 357899999999999999999999988887754
No 90
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.92 E-value=4.1e-08 Score=100.59 Aligned_cols=201 Identities=8% Similarity=0.062 Sum_probs=155.1
Q ss_pred HHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhH
Q 039015 417 LVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEY 496 (685)
Q Consensus 417 i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~ 496 (685)
+...+.++.|+..|.++++.++..|+.+|.++. ..++++.|+.+|.++ +..+|..|+.+|..+...+..
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~-~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCC-CHHHHHHHHHHHHHhcccccc
Confidence 345678999999999999999999999999876 246789999999988 899999999999888643221
Q ss_pred HHHhhcCCCcHHHHHH-HhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 039015 497 RKLIGENPEAIPALVD-MVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLA 575 (685)
Q Consensus 497 ~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La 575 (685)
. ...++.|.. ++.++++.++..|+.+|.++...... ....+++.|+.+| .++++.++..|+.+|.++.
T Consensus 88 ~------~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 88 E------DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITA-FDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp H------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-
T ss_pred c------hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcC
Confidence 1 113344443 45677899999999999998632211 1224578899999 6788999999999998775
Q ss_pred cChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHH
Q 039015 576 EKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASA 655 (685)
Q Consensus 576 ~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~ 655 (685)
. .+.++.|+.++++. ++.++..|+.+|..+...+ + .+++.|..++.+.++.++..|..
T Consensus 157 ~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~-~----------~~~~~L~~~l~d~~~~vR~~A~~ 214 (280)
T 1oyz_A 157 D----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDN-S----------DIRDCFVEMLQDKNEEVRIEAII 214 (280)
T ss_dssp ------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCC-H----------HHHHHHHHHTTCSCHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCc-H----------HHHHHHHHHhcCCCHHHHHHHHH
Confidence 3 24799999999987 9999999999998885432 1 23668888999999999998888
Q ss_pred HHHHHH
Q 039015 656 LIRILH 661 (685)
Q Consensus 656 lL~~l~ 661 (685)
.|..+.
T Consensus 215 aL~~~~ 220 (280)
T 1oyz_A 215 GLSYRK 220 (280)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 887654
No 91
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.89 E-value=1e-09 Score=87.54 Aligned_cols=49 Identities=31% Similarity=0.513 Sum_probs=43.4
Q ss_pred CCCccCcCccccCCCc-eeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 278 PDDFTCPISLEIMKDP-VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dP-v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
..+..||||++.+.+| +.++|||+||..||.+|+.. +.+||.|+..+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 3467899999999997 67899999999999999987 6899999998763
No 92
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.85 E-value=2.9e-09 Score=85.09 Aligned_cols=52 Identities=21% Similarity=0.485 Sum_probs=44.0
Q ss_pred CCCCCccCcCccccCC---CceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 276 LTPDDFTCPISLEIMK---DPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~---dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
...++..|+||++.+. ++++++|||.||..||.+|+.. +.+||.|+..+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 4456789999999885 4577899999999999999997 67899999988643
No 93
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.85 E-value=1.5e-09 Score=82.53 Aligned_cols=47 Identities=23% Similarity=0.420 Sum_probs=42.0
Q ss_pred CCccCcCccccCCC----ceeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 279 DDFTCPISLEIMKD----PVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 279 ~~~~CpIc~~~m~d----Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
++..|+||++.+.+ +++++|||.||..||.+|+.. ..+||.|++.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 46889999999976 778899999999999999998 489999998764
No 94
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=3.1e-09 Score=86.18 Aligned_cols=52 Identities=21% Similarity=0.403 Sum_probs=45.5
Q ss_pred CCCCCccCcCccccCCCceec---cCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 276 LTPDDFTCPISLEIMKDPVTL---STGHTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~---~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
+..++..|+||++.+.+|..+ +|||.||..||.+|+.. ..+||.|++.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 567789999999999988655 99999999999999997 56999999988643
No 95
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.84 E-value=1.3e-09 Score=82.92 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=43.2
Q ss_pred CCCCccCcCccccCCC---ceecc-CcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 277 TPDDFTCPISLEIMKD---PVTLS-TGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~d---Pv~~~-cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
+.++..|+||++.+.+ ++.++ |||.||..||.+|+.. +.+||.|++.+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 4567899999999998 78886 9999999999999987 789999998763
No 96
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.83 E-value=2.3e-08 Score=119.04 Aligned_cols=273 Identities=14% Similarity=0.101 Sum_probs=188.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
..++.+...+.+++++++..|++.|..++...+..-.... .+.++.++.++.+.+..++..|+..+..++.....+..+
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4577788888889999999999999999975543211111 257888889999999999999999999998766444433
Q ss_pred H--hcCcHHHHHHHhc----------CC-----------CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc
Q 039015 459 V--ESGGLDFIVDMVK----------KG-----------LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR 515 (685)
Q Consensus 459 ~--~~g~i~~Lv~lL~----------~~-----------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~ 515 (685)
. -...++.++..+. .. .+..+|..|+.+|..|+.... ...+ ...++.+..++.
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~---~~l~~~l~~~l~ 369 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELL---PHILPLLKELLF 369 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHH---HHHHHHHHHHhc
Confidence 2 1244666666652 11 022358889999988876443 1222 247888888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhc-HHHHHhcCChHHHH
Q 039015 516 DGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG-TIAILHHGALDMIM 594 (685)
Q Consensus 516 ~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~-~~~i~~~g~v~~Lv 594 (685)
+.+...+..|+.+|.+++........-.-.++++.|+.+| .++++.++..|+.+|.+++..-.. .....-.+.++.|+
T Consensus 370 ~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~ 448 (852)
T 4fdd_A 370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL 448 (852)
T ss_dssp CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 8899999999999999987654321112345788899999 778899999999999999863211 00000112357777
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015 595 KILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH 661 (685)
Q Consensus 595 ~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 661 (685)
..+.+. ++.+++.|+.+|.++|...+......+ .++++.|..++.....+....+...+..+.
T Consensus 449 ~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l---~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 449 KRILDS-NKRVQEAACSAFATLEEEACTELVPYL---AYILDTLVFAFSKYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp HHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHH---HHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 777776 899999999999999976544322222 356778888887776655544444444443
No 97
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=6.9e-10 Score=89.08 Aligned_cols=52 Identities=21% Similarity=0.424 Sum_probs=46.6
Q ss_pred CCCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKE 329 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~ 329 (685)
...+.+.|+||++.+.+ ++++|||+||..||.+|+.. ..+||.|++.+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 56778999999999999 99999999999999999985 889999999887543
No 98
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=1.2e-09 Score=83.52 Aligned_cols=47 Identities=17% Similarity=0.105 Sum_probs=41.6
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
.+++.|+||++.+.+|++++|||+||+.||..| ...||.|++.+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 467999999999999999999999999999873 67899999987643
No 99
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.81 E-value=2.6e-07 Score=104.35 Aligned_cols=264 Identities=14% Similarity=0.118 Sum_probs=176.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
..++.+...+.+.++.+|..|+..|..++..... .......+|.|..++.+++..++..|+.+|..++..-... .
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~ 238 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D 238 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence 4567777778888999999999999999874322 2234577899999999999999999999999887543321 1
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG- 537 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~- 537 (685)
.....++.+..++... +..+|..|+.+|..++..-.... .. ...++.++.++++.++.++..|+.+|..++..-.
T Consensus 239 ~~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~--~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 314 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPEI--TK-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp HHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHHH--HH-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCccc--ch-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh
Confidence 2345778888888877 89999999999999875322111 12 4579999999999899999999999999885432
Q ss_pred -cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015 538 -NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL 616 (685)
Q Consensus 538 -n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L 616 (685)
.+....-..++|.+..++ .+++..++..++.+|..++..-. .... ....+|.+..++++. ++.++..++.+|..+
T Consensus 315 ~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~-~~~~-~~~l~p~l~~~l~d~-~~~Vr~~a~~~l~~l 390 (588)
T 1b3u_A 315 DCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG-KDNT-IEHLLPLFLAQLKDE-CPEVRLNIISNLDCV 390 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC-HHHH-HHHTHHHHHHHHTCS-CHHHHHHHHTTCHHH
T ss_pred hhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh-HhHH-HHHHHHHHHHHhCCC-chHHHHHHHHHHHHH
Confidence 222223345677788887 66778888888888877765311 1111 112456666777765 677777777777666
Q ss_pred hccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015 617 CINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660 (685)
Q Consensus 617 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l 660 (685)
+...+... .. ..++|.|..++.+.+.+.+..+...+..+
T Consensus 391 ~~~~~~~~---~~--~~~lp~l~~~~~d~~~~vr~~~~~~l~~l 429 (588)
T 1b3u_A 391 NEVIGIRQ---LS--QSLLPAIVELAEDAKWRVRLAIIEYMPLL 429 (588)
T ss_dssp HHHSCHHH---HH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHhcCHHH---HH--HHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 65332211 00 12244444555444445544444444443
No 100
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.80 E-value=1.4e-09 Score=98.85 Aligned_cols=55 Identities=18% Similarity=0.432 Sum_probs=48.9
Q ss_pred CCCccCcCccccCCCc-------eeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015 278 PDDFTCPISLEIMKDP-------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN 333 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dP-------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n 333 (685)
.+++.||||++.+.+| ++++|||+||..||.+|+.. ..+||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 4679999999999999 89999999999999999987 6799999999987665554
No 101
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.80 E-value=2.4e-09 Score=90.67 Aligned_cols=51 Identities=18% Similarity=0.449 Sum_probs=44.8
Q ss_pred CCCCCccCcCccccCCC---ceeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 276 LTPDDFTCPISLEIMKD---PVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~d---Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
...++..|+||++.+.+ ++.++|||.||..||.+|+.. +.+||.|+..+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 34567899999999988 788899999999999999986 7799999998754
No 102
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.79 E-value=1.9e-07 Score=105.48 Aligned_cols=264 Identities=14% Similarity=0.148 Sum_probs=189.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV 459 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 459 (685)
.++.|...+.+.+..+|..|+..|..++...+. .....-.+|.+..+..+++...+..|+.+|..+...-... .
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~---~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~ 161 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSP---SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---V 161 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH---HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---H
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---H
Confidence 456666666778899999999999999974432 1233345777778888888999999999998887554321 1
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH
Q 039015 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH 539 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 539 (685)
....++.+..++... ++++|..|+.+|..++..-..... . ...+|.|..++.++++.++..|+.+|..++..-+..
T Consensus 162 ~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~--~-~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 237 (588)
T 1b3u_A 162 KAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELDNV--K-SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237 (588)
T ss_dssp HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHHHH--H-HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcHHhH--H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH
Confidence 344677888888877 999999999999998754322222 2 458899999999989999999999999887543321
Q ss_pred HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015 540 WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 540 ~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
.....++|.+..++ .+++..++..++.+|..++..... . ......++.++.++++. ++.++..|+.+|..++..
T Consensus 238 --~~~~~~~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 238 --DLEALVMPTLRQAA-EDKSWRVRYMVADKFTELQKAVGP-E-ITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp --HHHHHTHHHHHHHH-TCSSHHHHHHHHHTHHHHHHHHCH-H-HHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHhCc-c-cchhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHH
Confidence 23345788888888 677788999999999999763211 1 12234578888899887 899999999999999876
Q ss_pred CcHHHHH-HHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 039015 620 GGANVVA-LLVKSPSLMGSLYSLLSQGSSRASKKASALIRILH 661 (685)
Q Consensus 620 ~~~~~~~-~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 661 (685)
.+..... ... ..++|.+..++.+.+...+..|...|..+.
T Consensus 312 ~~~~~~~~~~~--~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 312 LSADCRENVIM--SQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp SCTTTHHHHHH--HTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred hChhhhhhHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5433111 111 345777778888877777777666555443
No 103
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=2.7e-09 Score=86.81 Aligned_cols=50 Identities=20% Similarity=0.446 Sum_probs=44.2
Q ss_pred CCCCccCcCccccCCCc---eeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 277 TPDDFTCPISLEIMKDP---VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~dP---v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
..++..|+||++.+.++ +.++|||.||..||.+|+.. +.+||.|++.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 35678999999999988 67799999999999999987 6799999998764
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.76 E-value=4.9e-08 Score=113.26 Aligned_cols=193 Identities=17% Similarity=0.202 Sum_probs=148.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHH-HhcCCCCHHHHHHHHHHHHHhcCc--hhHHH
Q 039015 422 CIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVD-MVKKGLKVEARQHAAATLFYIASI--EEYRK 498 (685)
Q Consensus 422 ~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~ 498 (685)
.|.+++..|.++++..+..|+.+|.||+.++.++..+...|+|..++. +|... +.++|..|+++|.||+.. .+.+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHHH
Confidence 355677889999999999999999999998888999999999888765 56666 999999999999999865 47888
Q ss_pred HhhcCCCcHHHHHHHhccCC---------------------HHHHHHHHHHHHHhcCCC-CcHHHHHhcCChHHHHHHhc
Q 039015 499 LIGENPEAIPALVDMVRDGT---------------------DRSKKNALVAIFGLLMHS-GNHWRFLAAGAVPLLLNLLT 556 (685)
Q Consensus 499 ~i~~~~g~i~~Lv~lL~~~~---------------------~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~ 556 (685)
.+.. .|++++|..+++... .....+++.+|++||... +....+...|+++.|+..|.
T Consensus 114 ~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 114 HLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 8888 999999999986311 122346788999999654 45667888999999999984
Q ss_pred cC--CChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChH---HHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015 557 SS--DSEELITDSLAVLATLAEK-LDGTIAILHHGALD---MIMKILDSCTSRAGKEYCVSLLLALCI 618 (685)
Q Consensus 557 ~~--~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~---~Lv~lL~~~~s~~~~e~a~~~L~~L~~ 618 (685)
.. ....+...|+.+|..++.+ +.....+.+.+... .+..+. .+ +...+-.++++|.++..
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~-~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TG-TDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HS-SCTTHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cC-CcHHHHHHHHHHHhHhh
Confidence 32 2467899999999999886 45556666666432 222233 33 44556778899999753
No 105
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.76 E-value=8.7e-08 Score=104.78 Aligned_cols=277 Identities=14% Similarity=0.094 Sum_probs=188.6
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcC-CchhhHHHhhCCHHHHHHhhcCC--CHHHHHHHHHHhhccccCcc-
Q 039015 380 LANFISDRLLEG--TSEEKNKVAYEVRLLTKSS-IFNRSCLVEVGCIPSLLKLLSSK--DSSTQENAIAALLNLSKHCK- 453 (685)
Q Consensus 380 ~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~ip~Lv~lL~s~--~~~~~~~A~~aL~nLs~~~~- 453 (685)
.++.|+..+.++ ++..+..|+..|..+++.. ...-... -...++.++.+|.+. +..++..|+.++.++...-.
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 588899999888 8999999999999999743 1110111 124678888999887 78999999999988653211
Q ss_pred h-hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh--HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 039015 454 S-KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE--YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF 530 (685)
Q Consensus 454 ~-k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 530 (685)
+ .......-.++.+...+..+ +.+++..++.+|..++.... ....+. .+.++.++..+++.++.++..|+..+.
T Consensus 208 ~~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTTT--TTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 1 01111112355666666666 88999999999998875432 112221 168888888888888999999999988
Q ss_pred HhcCCC------------------CcHHHHHh---cCChHHHHHHhccC------CChhHHHHHHHHHHHHhcChhcHHH
Q 039015 531 GLLMHS------------------GNHWRFLA---AGAVPLLLNLLTSS------DSEELITDSLAVLATLAEKLDGTIA 583 (685)
Q Consensus 531 nLs~~~------------------~n~~~iv~---~G~v~~Lv~lL~~~------~~~~~~~~al~~L~~La~~~~~~~~ 583 (685)
+++... .....+++ ..++|.+++.|... .+...+..|..+|..|+..-. ..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~ 362 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD 362 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TT
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence 887532 00001111 23567777777321 223678888889888876422 12
Q ss_pred HHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 584 ILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 584 i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
+.. ..++.+...+++. +...++.|+.+|..++.+.......... ..++|.|..++.+.++.++..|.+.|..+...
T Consensus 363 ~~~-~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 363 IVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 221 2356666677776 8899999999999999764322111111 46899999999999999999999999988886
Q ss_pred hcc
Q 039015 664 YER 666 (685)
Q Consensus 664 ~~~ 666 (685)
...
T Consensus 439 ~~~ 441 (462)
T 1ibr_B 439 LPE 441 (462)
T ss_dssp GGG
T ss_pred ccc
Confidence 543
No 106
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.71 E-value=8.2e-09 Score=91.29 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=42.1
Q ss_pred CCccCcCccccCCCce------------------eccCcccccHHHHHHHHHc----CCCCCCCCCccccC
Q 039015 279 DDFTCPISLEIMKDPV------------------TLSTGHTYDRASILKWFRA----GNSTCPKTGERLQS 327 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv------------------~~~cghtfcr~ci~~~~~~----~~~~CP~c~~~l~~ 327 (685)
.+..||||++.|.+|+ +++|||.||..||.+|+.. ++.+||.|+..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4579999999998876 6799999999999999963 36799999988754
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.69 E-value=9.7e-08 Score=110.76 Aligned_cols=195 Identities=13% Similarity=0.099 Sum_probs=145.5
Q ss_pred cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHH-HHhccCCHHHHHHHHHHHHHhcCCC--C
Q 039015 461 SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALV-DMVRDGTDRSKKNALVAIFGLLMHS--G 537 (685)
Q Consensus 461 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~A~~aL~nLs~~~--~ 537 (685)
...|.++++.|+++ +++.|..|+++|.+|+.++..+..+.. .|+|..++ .+|.+.+..++..|+++|.||+.+. +
T Consensus 33 ~~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 33 EDKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 34566777889998 999999999999999998899998888 77777665 5788889999999999999999654 5
Q ss_pred cHHHHHhcCChHHHHHHhccC--------C-----C-------hhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHH
Q 039015 538 NHWRFLAAGAVPLLLNLLTSS--------D-----S-------EELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKI 596 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~~~--------~-----~-------~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~l 596 (685)
.+..+++.|++++|..+|.+. . . ..+.+.++.+|.+||. +.+....+...++++.|+..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 788999999999999998420 0 0 1345678889999986 45566778888889999996
Q ss_pred hhcC--CChhHHHHHHHHHHHHhccCcHHHHHHHHhcCC---cHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015 597 LDSC--TSRAGKEYCVSLLLALCINGGANVVALLVKSPS---LMGSLYSLLSQGSSRASKKASALIRIL 660 (685)
Q Consensus 597 L~~~--~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g---~i~~L~~Ll~~g~~~~k~~A~~lL~~l 660 (685)
|... ....+...|+.+|..++.++.+ ..+.+.. .| ++..|..+..+.+.. +..+..+|..+
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~-~~~~i~~-~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni 256 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDNLK-VGQAITD-DQETHVYDVLLKLATGTDPR-AVMACGVLHNV 256 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHT-CCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccCHH-HHHHHHh-cchHHHHHHHHHHhcCCcHH-HHHHHHHHHhH
Confidence 5432 2457889999999999998754 4455554 33 345555555444444 44445555444
No 108
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.67 E-value=2e-06 Score=98.06 Aligned_cols=263 Identities=13% Similarity=0.120 Sum_probs=183.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh-HH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK-SM 457 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k-~~ 457 (685)
..++.+.+.|.+.++.+|..|+.++..+...+++ .+.+.|++|.|..+|.++|+.++.+|+.+|..+..+.... ..
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 4567788889999999999999999999985554 3444688999999999999999999999999998766432 11
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC--
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH-- 535 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-- 535 (685)
-...+.+..|+..+... ++-.+.....+|..+...++. .. ...++.+..++++.++.++..|++++.++...
T Consensus 198 ~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~--~~---~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 198 DLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDR--EA---QSICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp CCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHH--HH---HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred hccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChH--HH---HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 12345677788888777 788888888888887744321 11 23678888889988899999999999998742
Q ss_pred -CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hh------------------c-HHHH------HhcC
Q 039015 536 -SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LD------------------G-TIAI------LHHG 588 (685)
Q Consensus 536 -~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~------------------~-~~~i------~~~g 588 (685)
.+.....+-..+.+.|+.++ + ++..++-.|+..|..++.. +. . +.++ .+..
T Consensus 272 ~~~~~~~~~~~~~~~~L~~L~-~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~ 349 (591)
T 2vgl_B 272 KDSDYYNMLLKKLAPPLVTLL-S-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQA 349 (591)
T ss_dssp BTTBSHHHHHHHTHHHHHHHT-T-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChh
Confidence 22222223344567777766 3 5677888888888777641 11 1 1111 1222
Q ss_pred ChH----HHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015 589 ALD----MIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660 (685)
Q Consensus 589 ~v~----~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l 660 (685)
.+. .|...+++. +...+..++.++..+|...++... ..++.|+.++.+..+.....+...++.+
T Consensus 350 nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~~~~-------~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 350 NIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSAE-------RCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp THHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChhHHH-------HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 344 344455565 889999999999999987643321 2366888889888777766655555444
No 109
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.63 E-value=5.9e-09 Score=84.56 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=41.0
Q ss_pred CCCccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
.+++.|+||++.+.+|++++|||+ ||..|+..| ..||.|++.+..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 456899999999999999999999 999999988 789999998864
No 110
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.61 E-value=2.1e-08 Score=105.86 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=45.3
Q ss_pred CCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 279 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
....|+||.+.+.+|+.++|||+||..||..|+..+..+||.|+..+...
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34799999999999999999999999999999986588999999988654
No 111
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.58 E-value=1.2e-08 Score=92.67 Aligned_cols=56 Identities=18% Similarity=0.418 Sum_probs=50.1
Q ss_pred CCCCccCcCccccCCCc-------eeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCCccc
Q 039015 277 TPDDFTCPISLEIMKDP-------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVN 333 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~dP-------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n 333 (685)
.++.+.|+||++.+.+| +.++|||+||..||.+|+.. ..+||.|+..+...++.|+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 46789999999999988 88899999999999999998 7899999999988777665
No 112
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=5.9e-08 Score=80.11 Aligned_cols=48 Identities=21% Similarity=0.421 Sum_probs=40.0
Q ss_pred CCccCcCccccCCC--------------ceec-cCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 279 DDFTCPISLEIMKD--------------PVTL-STGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 279 ~~~~CpIc~~~m~d--------------Pv~~-~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
++..|+||++.+.+ ++.+ +|||.|+..||.+|+.. +.+||.|++.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 45679999998877 4455 59999999999999997 6799999998754
No 113
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.49 E-value=7.6e-08 Score=75.53 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=43.3
Q ss_pred CCCccCcCccccCCCceec--cCccc-ccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 278 PDDFTCPISLEIMKDPVTL--STGHT-YDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~--~cght-fcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
+++..|+||++...+++++ +|||. ||..|+.+|+.. +..||.||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 4567899999999999987 99999 899999999986 678999999875
No 114
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=4e-08 Score=79.86 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=40.0
Q ss_pred CCCccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
.+++.|+||++.+.+|++++|||+ ||..|+.+ ...||.|++.+..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 456899999999999999999999 99999964 4789999998865
No 115
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.43 E-value=1.8e-06 Score=98.38 Aligned_cols=252 Identities=13% Similarity=0.135 Sum_probs=173.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV 459 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 459 (685)
.+..+.+.|.+++.+.+..++..+-.+.-.+.+. ..+.+.+++++.+++..++..+..++.+++.....- +
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~--~- 84 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM--A- 84 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH--H-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH--H-
Confidence 4777889999999888888776665443323221 235678889999999999999988888876532211 1
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcH
Q 039015 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNH 539 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 539 (685)
.-++..+..-|.++ ++..|..|+.+|.++.. ++.. ...++.+..++.+.++.+++.|+.+|.++....+.
T Consensus 85 -~l~~n~l~kdL~~~-n~~ir~~AL~~L~~i~~-~~~~------~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~- 154 (591)
T 2vgl_B 85 -IMAVNSFVKDCEDP-NPLIRALAVRTMGCIRV-DKIT------EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ- 154 (591)
T ss_dssp -HTTHHHHGGGSSSS-SHHHHHHHHHHHHTCCS-GGGH------HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-
T ss_pred -HHHHHHHHHHcCCC-CHHHHHHHHHHHHcCCh-HHHH------HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-
Confidence 22356666777777 99999999999988852 2222 23467899999999999999999999999864332
Q ss_pred HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHH-HHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015 540 WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTI-AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI 618 (685)
Q Consensus 540 ~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~-~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~ 618 (685)
.+.+.|.++.|..+| .++++.++..|+.+|..++....... .....+.++.|+..+... ++..+-..+.+|..++.
T Consensus 155 -~~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~ 231 (591)
T 2vgl_B 155 -MVEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNP 231 (591)
T ss_dssp -CHHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCC
T ss_pred -hcccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCC
Confidence 223357889999999 68889999999999999987533110 001112255667766666 88888888888887775
Q ss_pred cCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015 619 NGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660 (685)
Q Consensus 619 ~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l 660 (685)
.++.... .+++.+..++++.++.+...|..++..+
T Consensus 232 ~~~~~~~-------~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 232 KDDREAQ-------SICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CSHHHHH-------HHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred CChHHHH-------HHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 5433221 2345666666666666665555554443
No 116
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.42 E-value=5e-08 Score=83.03 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=47.9
Q ss_pred CCccCcCccccCCCceec---cCcccccHHHHHHHHHc----C---CCCCCC--CCcc--ccCCCCcccHHHHhhHHHHH
Q 039015 279 DDFTCPISLEIMKDPVTL---STGHTYDRASILKWFRA----G---NSTCPK--TGER--LQSKELLVNLVLKRIIQDWS 344 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~---~cghtfcr~ci~~~~~~----~---~~~CP~--c~~~--l~~~~l~~n~~l~~~i~~~~ 344 (685)
+.+.||||++.+.+|+.+ +|||.||+.|+..|+.. | ...||. |+.. +....+ .+....++++.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHHH
Confidence 468999999999999865 69999999999999973 3 348999 9887 544322 1222244555665
Q ss_pred H
Q 039015 345 V 345 (685)
Q Consensus 345 ~ 345 (685)
+
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 117
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.40 E-value=1.5e-07 Score=73.59 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=42.7
Q ss_pred CCccCcCccccCCCceec--cCccc-ccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 279 DDFTCPISLEIMKDPVTL--STGHT-YDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~--~cght-fcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
....|+||++...|++++ +|||. ||..|+.+|+.. ...||.||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 347899999999999988 99998 999999999886 5789999998853
No 118
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.36 E-value=2.7e-07 Score=80.03 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=40.2
Q ss_pred CCccCcCccccCCCc------------------eeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 279 DDFTCPISLEIMKDP------------------VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 279 ~~~~CpIc~~~m~dP------------------v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
++-.|+||++.|.++ +.++|||.|+..||.+|+.. +.+||.|++.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 356799999999876 33589999999999999987 889999998753
No 119
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.35 E-value=1.9e-05 Score=93.66 Aligned_cols=275 Identities=14% Similarity=0.100 Sum_probs=186.5
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCchhhHHHh--hCCHHHHHHhhcCC--CHHHHHHHHHHhhccccCcc
Q 039015 380 LANFISDRLLEG--TSEEKNKVAYEVRLLTKSSIFNRSCLVE--VGCIPSLLKLLSSK--DSSTQENAIAALLNLSKHCK 453 (685)
Q Consensus 380 ~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~~r~~i~~--~G~ip~Lv~lL~s~--~~~~~~~A~~aL~nLs~~~~ 453 (685)
.++.|++.+.++ ++..+..++..|..++.... ...+.. ...++.+...+.++ +..++..|+.+|.++...-.
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 478888999888 89999999999999987421 111221 24577778888776 68899999999988764321
Q ss_pred -h-hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHH
Q 039015 454 -S-KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI 529 (685)
Q Consensus 454 -~-k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL 529 (685)
+ .........++.+...+... +.+++..++.+|..+.... .....+. ...++.++..+.+.++.++..|+..+
T Consensus 207 ~~~~~~~~~~~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~v~~~al~~l 283 (876)
T 1qgr_A 207 ANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSDIDEVALQGIEFW 283 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHHT--TTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 1 11111123567777777766 8899999999998887533 2222332 36888888888888888999999988
Q ss_pred HHhcCCC-------------------C--cHHHHHhcCChHHHHHHhcc------CCChhHHHHHHHHHHHHhcChhcHH
Q 039015 530 FGLLMHS-------------------G--NHWRFLAAGAVPLLLNLLTS------SDSEELITDSLAVLATLAEKLDGTI 582 (685)
Q Consensus 530 ~nLs~~~-------------------~--n~~~iv~~G~v~~Lv~lL~~------~~~~~~~~~al~~L~~La~~~~~~~ 582 (685)
.+++... . ...+-.-...++.++..|.. +.+..++..|..+|..++..-..
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-- 361 (876)
T 1qgr_A 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-- 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--
T ss_pred HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--
Confidence 8887431 0 11100112356777777742 22346778888888888764221
Q ss_pred HHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015 583 AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE 662 (685)
Q Consensus 583 ~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 662 (685)
.++. ..++.+...+.+. +...++.|+.+|..++...+++...... ..+++.|+..+.+.++.++..|.+.+..+..
T Consensus 362 ~~~~-~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T 1qgr_A 362 DIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp GGHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred hhHH-HHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 1111 2345555667666 8899999999999999876533222222 3468899999999999999999998888887
Q ss_pred hhc
Q 039015 663 FYE 665 (685)
Q Consensus 663 ~~~ 665 (685)
...
T Consensus 438 ~~~ 440 (876)
T 1qgr_A 438 LLP 440 (876)
T ss_dssp HCG
T ss_pred hCc
Confidence 643
No 120
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.30 E-value=3.5e-06 Score=99.72 Aligned_cols=273 Identities=13% Similarity=0.150 Sum_probs=179.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-chhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh--
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSI-FNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK-- 455 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~-~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k-- 455 (685)
..++.+.+.+.+.+...|..|+..|..++.... ..-.... ...+|.|+..+.++++.++..++++|..++..-...
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 456677777788899999999999999986332 1111111 257889999999999999999999999887542110
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh------HHHHhhcCCCcHHHHHHHhccCC--HHHHHHHHH
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE------YRKLIGENPEAIPALVDMVRDGT--DRSKKNALV 527 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~------~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~A~~ 527 (685)
..-.-...++.++..|+.. +.++..|+.+|.+++..-. ....+ ...++.|+.++.+.+ +.++..++.
T Consensus 448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFY---PALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHH---HHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 0001234577888888654 8899999999998865321 12222 236788888887533 678888999
Q ss_pred HHHHhcCCCCc-HHHHHhcCChHHHHHHhccC--------------CChhHHHHHHHHHHHHhcChhc-HHHHHhcCChH
Q 039015 528 AIFGLLMHSGN-HWRFLAAGAVPLLLNLLTSS--------------DSEELITDSLAVLATLAEKLDG-TIAILHHGALD 591 (685)
Q Consensus 528 aL~nLs~~~~n-~~~iv~~G~v~~Lv~lL~~~--------------~~~~~~~~al~~L~~La~~~~~-~~~i~~~g~v~ 591 (685)
+|..+....+. ....+. ..++.+++.|... ....++..++.+|..++..-.. -..... ..++
T Consensus 523 al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~ 600 (861)
T 2bpt_A 523 ALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMG 600 (861)
T ss_dssp HHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHH
T ss_pred HHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHH
Confidence 99998854432 222222 3667777776321 1234566788888888753211 000111 1356
Q ss_pred HHHHHhhcCCCh-hHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 592 MIMKILDSCTSR-AGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 592 ~Lv~lL~~~~s~-~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
.++.+++.. +. .+++.++.++..++...+......+ ..+++.|...+.+.+...+..|..++..+.+.
T Consensus 601 ~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l---~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 601 LFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYL---ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHH---HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 677777765 55 7899999999888876544443333 23688889888777778888888877766554
No 121
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.28 E-value=1.6e-05 Score=91.10 Aligned_cols=217 Identities=11% Similarity=0.111 Sum_probs=144.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHH
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSM 457 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 457 (685)
...+..|.+.|.+.++..+..|++.|..+.. + .+. ...+|.+..+|.+.++.++..|+.++.++......
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~----~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~--- 175 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--S----EMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE--- 175 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--H----HHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--H----HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---
Confidence 4568899999999999999999999998863 2 222 35688899999999999999999999999864332
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhcc---------------CCHHH
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRD---------------GTDRS 521 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~---------------~~~~~ 521 (685)
++ .+.++.+..+|... ++.++..|+.+|..++..+ +....+. ..+|.|+.+|.+ .++-.
T Consensus 176 ~v-~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~~~~~~---~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 176 LM-EMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDMLAHFR---KLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp GG-GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHHHHHHH---TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred HH-HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHHHHHHH---HHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 11 26778888888877 8999999999999998765 3222332 478888888763 36778
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc-----CCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHH
Q 039015 522 KKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS-----SDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKI 596 (685)
Q Consensus 522 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~l 596 (685)
+...+.+|..++..+... .....+.|..++.. +.+..+.-.|+.++..+...+..+. .++..|..+
T Consensus 251 q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~ 321 (618)
T 1w63_A 251 QVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRF 321 (618)
T ss_dssp HHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH
Confidence 888889998888654221 12344455555421 1123455555666655543322111 123445555
Q ss_pred hhcCCChhHHHHHHHHHHHHhcc
Q 039015 597 LDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 597 L~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
+.+. ++.++..|+.+|..++..
T Consensus 322 L~~~-d~~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 322 LLNN-DKNIRYVALTSLLKTVQT 343 (618)
T ss_dssp HTCS-STTTHHHHHHHHHHHHHH
T ss_pred HhCC-CCchHHHHHHHHHHHHhh
Confidence 5544 555566666555555543
No 122
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.28 E-value=2.5e-05 Score=89.48 Aligned_cols=218 Identities=13% Similarity=0.081 Sum_probs=140.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh-H
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK-S 456 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k-~ 456 (685)
+..++.+.+.|.+.++.+|..|+.++..+...+++.-. ++++.+..+|.+.|+.++..|+.+|..+..++... .
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 45578888889999999999999999999987665322 67888999999999999999999999998764331 1
Q ss_pred HHHhcCcHHHHHHHhcC--------------CCCHHHHHHHHHHHHHhcCchh-HHHHhhcCCCcHHHHHHHhcc-----
Q 039015 457 MVVESGGLDFIVDMVKK--------------GLKVEARQHAAATLFYIASIEE-YRKLIGENPEAIPALVDMVRD----- 516 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~--------------~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~----- 516 (685)
.+ ...++.++.+|.. -.++-.+...+.+|..++..+. ... ..++.|..++..
T Consensus 216 ~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~------~~~~~L~~l~~~~~~~~ 287 (618)
T 1w63_A 216 HF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE------AMNDILAQVATNTETSK 287 (618)
T ss_dssp HH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH------TTHHHHHHHHHTSCCSS
T ss_pred HH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH------HHHHHHHHHHhcccccc
Confidence 22 3678888887763 1257778888888888876542 111 234444444421
Q ss_pred -CCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH
Q 039015 517 -GTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK 595 (685)
Q Consensus 517 -~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~ 595 (685)
.+..+...|+.++.++...+ .+. ..++..|..+| .+.+..++..|+..|..++.... . ++. .....++.
T Consensus 288 ~~~~aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L-~~~d~~vr~~aL~~L~~i~~~~p--~-~~~-~~~~~i~~ 357 (618)
T 1w63_A 288 NVGNAILYETVLTIMDIKSES----GLR-VLAINILGRFL-LNNDKNIRYVALTSLLKTVQTDH--N-AVQ-RHRSTIVD 357 (618)
T ss_dssp THHHHHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHH-TCSSTTTHHHHHHHHHHHHHHHH--H-HHG-GGHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHH-hCCCCchHHHHHHHHHHHHhhCH--H-HHH-HHHHHHHH
Confidence 22355556667776654321 111 13456666666 44556677777777776665311 1 111 12345555
Q ss_pred HhhcCCChhHHHHHHHHHHHHhcc
Q 039015 596 ILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 596 lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
++.+. +..++..|+.+|..++..
T Consensus 358 ~l~d~-d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 358 CLKDL-DVSIKRRAMELSFALVNG 380 (618)
T ss_dssp GGGSS-CHHHHHHHHHHHHHHCCS
T ss_pred HccCC-ChhHHHHHHHHHHHHccc
Confidence 55555 666666666666666654
No 123
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.27 E-value=1.7e-05 Score=77.01 Aligned_cols=189 Identities=14% Similarity=0.090 Sum_probs=144.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc-hhH
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK-SKS 456 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~-~k~ 456 (685)
+..+..|...|...|+..+.+|+..|..+-+.-+..-....=...+|.++.++.+.|..+..+|+.+|.-|-.+.+ ...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3467888899999999999999999999988533322222223569999999999999999999999988876553 233
Q ss_pred HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015 457 MVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS 536 (685)
Q Consensus 457 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 536 (685)
.+.. .+..+..+++++ +.-.+..|+..|..|...... .+.+..|..++.+.+.+.+..|+.+|.|++...
T Consensus 112 ~y~K--l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHH--HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHH--HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 3322 367788888888 899999999999999332222 346778888898889999999999999999766
Q ss_pred CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015 537 GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD 579 (685)
Q Consensus 537 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~ 579 (685)
+... +-.+++.-+-.+| ++.++.+.+.|+.+|..+.+.+-
T Consensus 182 ~D~~--i~~~I~~eI~elL-~~eD~~l~e~aLd~Le~ils~pi 221 (265)
T 3b2a_A 182 ADSG--HLTLILDEIPSLL-QNDNEFIVELALDVLEKALSFPL 221 (265)
T ss_dssp SSCC--CGGGTTTTHHHHH-TCSCHHHHHHHHHHHHHHTTSCC
T ss_pred CCHH--HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCcc
Confidence 5433 1233455577788 56699999999999999988654
No 124
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.27 E-value=1.4e-05 Score=94.74 Aligned_cols=272 Identities=10% Similarity=0.058 Sum_probs=182.1
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCch-hhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-
Q 039015 379 LLANFISDRLLEG--TSEEKNKVAYEVRLLTKSSIFN-RSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS- 454 (685)
Q Consensus 379 ~~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~~-r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~- 454 (685)
..++.+.+.+.++ +.++|..|++++..++..-..+ .........++.+...+.+.+..++..++.+|..+......
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 3567777888766 6889999999999887532211 01111123577778888888899999999999988754332
Q ss_pred hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhH-----------------------HHHhhcCCCcHHHHH
Q 039015 455 KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEY-----------------------RKLIGENPEAIPALV 511 (685)
Q Consensus 455 k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~-----------------------~~~i~~~~g~i~~Lv 511 (685)
-...+....++.++..+... +.+++..|+.++..++..... +..+ ...++.++
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ll~~ll 327 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL---QYLVPILT 327 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH---HHHhHHHH
Confidence 11222347788888888776 889999999988888654210 0011 23567777
Q ss_pred HHhcc-------CCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh--cHH
Q 039015 512 DMVRD-------GTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD--GTI 582 (685)
Q Consensus 512 ~lL~~-------~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~--~~~ 582 (685)
..+.. .+...++.|+.+|..|+..-+. .++ ..+++.+...+ .+.+..++..|+.+|..++.... ...
T Consensus 328 ~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l-~~~~~~~r~~a~~~l~~i~~~~~~~~~~ 403 (876)
T 1qgr_A 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPEPSQLK 403 (876)
T ss_dssp HHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHc-cCCChHHHHHHHHHHHHHHcCCCHHHHH
Confidence 77752 2356788888888888643221 112 23456666666 56788999999999999987532 222
Q ss_pred HHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHH--HHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015 583 AILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANV--VALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660 (685)
Q Consensus 583 ~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~--~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l 660 (685)
... ...++.++..+.+. ++.++..|+.+|.+++...+... ...+ ..+++.|+..+.+. ++.+..|.+.+..+
T Consensus 404 ~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~l---~~~l~~l~~~l~~~-~~v~~~a~~al~~l 477 (876)
T 1qgr_A 404 PLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVYL---APLLQCLIEGLSAE-PRVASNVCWAFSSL 477 (876)
T ss_dssp HHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTSSTTTH---HHHHHHHHHHTTSC-HHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCchhcccHHHH---HHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 222 23578888888887 89999999999999998654321 0111 23567788888774 88888888877777
Q ss_pred HHhh
Q 039015 661 HEFY 664 (685)
Q Consensus 661 ~~~~ 664 (685)
....
T Consensus 478 ~~~~ 481 (876)
T 1qgr_A 478 AEAA 481 (876)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6553
No 125
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.23 E-value=1.9e-07 Score=76.56 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=39.9
Q ss_pred CCccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 279 DDFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
++..|+||++.+.+|++++|||. ||..|+..| ..||.|+..+...
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCe
Confidence 45789999999999999999999 999999876 3899999988643
No 126
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.23 E-value=2.9e-06 Score=105.01 Aligned_cols=269 Identities=11% Similarity=0.073 Sum_probs=183.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV 459 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 459 (685)
.+..|+..+.+.+.+.|..|...|.+..+.+...-..-.....++.|+..|.+++..+|..|+.+|.+++..-... .
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~-- 83 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-Q-- 83 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-H--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-H--
Confidence 4778889999999999999999998876532111111112345788999999999999999999999988643321 1
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHH-------HHhhcCCCcHHHHHHHhc-cCCHHHHHHHHHHHHH
Q 039015 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYR-------KLIGENPEAIPALVDMVR-DGTDRSKKNALVAIFG 531 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-------~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~n 531 (685)
-...++.|+..|..+ +..+|..|+.+|..++..-... .... ...+|.|+..+. +++...+..|+.+|..
T Consensus 84 ~~~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~--~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVC--KKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HHHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHH--HHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 133577788888777 7788988888888776422111 1111 347899999998 4778999999999999
Q ss_pred hcCCCC--cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHH
Q 039015 532 LLMHSG--NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYC 609 (685)
Q Consensus 532 Ls~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a 609 (685)
++...+ ... .-...++.|+..| .+++..++..|+.+|..++..... .+. ...++.++..+....++..+..+
T Consensus 161 ~~~~~~~~l~~--~~~~ll~~l~~~L-~~~~~~vR~~a~~al~~l~~~~~~--~~~-~~~l~~l~~~L~~~~~~~~r~~a 234 (1230)
T 1u6g_C 161 MLSRQGGLLVN--FHPSILTCLLPQL-TSPRLAVRKRTIIALGHLVMSCGN--IVF-VDLIEHLLSELSKNDSMSTTRTY 234 (1230)
T ss_dssp HHHHTCSSCTT--THHHHHHHHGGGG-GCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTH
T ss_pred HHHHhHhHHHH--HHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHhcCH--HHH-HHHHHHHHHHhccCCchhHHHHH
Confidence 974221 111 1123456667777 567789999999999999875332 121 12378888866654234566778
Q ss_pred HHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 610 VSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 610 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
+.++..++...+..... .-..+++.++..+++.++..++.|...+..+.+.
T Consensus 235 ~~~l~~l~~~~~~~~~~---~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 235 IQCIAAISRQAGHRIGE---YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHHHHSSGGGTT---SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 88888888765442211 1146799999999988888888888777766654
No 127
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.23 E-value=2.8e-05 Score=92.00 Aligned_cols=275 Identities=14% Similarity=0.097 Sum_probs=183.1
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhhcCCch-h-hHHHhhCCHHHHHHhhcCC--CHHHHHHHHHHhhccccCcc-
Q 039015 380 LANFISDRLLEG-TSEEKNKVAYEVRLLTKSSIFN-R-SCLVEVGCIPSLLKLLSSK--DSSTQENAIAALLNLSKHCK- 453 (685)
Q Consensus 380 ~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~-r-~~i~~~G~ip~Lv~lL~s~--~~~~~~~A~~aL~nLs~~~~- 453 (685)
.++.|++.+.++ ++..+..|+..+..+++.-... + -.-.....++.++..|.++ +..++..|+.+|.++...-.
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 214 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN 214 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 578899999888 8999999999999998743211 1 0001123567777788776 78999999999988643211
Q ss_pred h-hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh--HHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 039015 454 S-KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE--YRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF 530 (685)
Q Consensus 454 ~-k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 530 (685)
+ .........++.+...+..+ +.++|..++.+|..++.... ....+. ...++.++..+.+.++.++..|+.++.
T Consensus 215 ~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~~~l~ 291 (861)
T 2bpt_A 215 NMEREGERNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMKSPNDKVASMTVEFWS 291 (861)
T ss_dssp HHTSHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HccChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1 00011123566677777777 89999999999988875432 222222 146777788888888999999999998
Q ss_pred HhcCCCC-----------------cH-HHHHhcCChHHHHHHhccC------CChhHHHHHHHHHHHHhcChhcHHHHHh
Q 039015 531 GLLMHSG-----------------NH-WRFLAAGAVPLLLNLLTSS------DSEELITDSLAVLATLAEKLDGTIAILH 586 (685)
Q Consensus 531 nLs~~~~-----------------n~-~~iv~~G~v~~Lv~lL~~~------~~~~~~~~al~~L~~La~~~~~~~~i~~ 586 (685)
.++.... +. ...+ ..+++.|+..|... ++..++..+..+|..++..-. ..+..
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~~ 368 (861)
T 2bpt_A 292 TICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHILE 368 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGHH
T ss_pred HHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHHH
Confidence 8875421 00 1111 34678888888431 224677888888888876421 11111
Q ss_pred cCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015 587 HGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 587 ~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 664 (685)
..++.+.+.+.+. +...++.|+.+|..++...+........ ..+++.|+..+.+.++..+..|.+.+..+..+.
T Consensus 369 -~l~~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 442 (861)
T 2bpt_A 369 -PVLEFVEQNITAD-NWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSV 442 (861)
T ss_dssp -HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence 1245555566666 8889999999999999765422222222 246889999999999999998888887777654
No 128
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.21 E-value=7.7e-06 Score=89.15 Aligned_cols=269 Identities=11% Similarity=0.082 Sum_probs=177.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCC--CHHHHHHHHHHhhccccCcchhH-HH
Q 039015 382 NFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSK--DSSTQENAIAALLNLSKHCKSKS-MV 458 (685)
Q Consensus 382 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~--~~~~~~~A~~aL~nLs~~~~~k~-~i 458 (685)
..|+..|.+.+... ..++..|..++........ ..+.+|.|+..+.++ +..+++.|+.+|..++.+-.... .-
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 168 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 168 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh
Confidence 44667777776667 7788888888874321111 257899999999888 89999999999999986431110 00
Q ss_pred HhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCch-hHH-HHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015 459 VESGGLDFIVDMVKKGL-KVEARQHAAATLFYIASIE-EYR-KLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH 535 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~-~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 535 (685)
.-...++.++..|.... +.++|..|+.++.++...- +.- ..... .-.++.|...+.++++..+..++.+|..++..
T Consensus 169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 11347788888888763 6899999999999865321 111 00001 11466677777778889999999999998753
Q ss_pred CCcH-HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHH------------------HHh---cCChHHH
Q 039015 536 SGNH-WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIA------------------ILH---HGALDMI 593 (685)
Q Consensus 536 ~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~------------------i~~---~g~v~~L 593 (685)
.... ...+..++++.++..+ .+.++.++..|+..+..++........ +.+ ...+|.+
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l 326 (462)
T 1ibr_B 248 YYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (462)
T ss_dssp CGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH
Confidence 3211 1112225677777777 567888999999999888765311111 110 1124556
Q ss_pred HHHhhcC------CChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015 594 MKILDSC------TSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE 662 (685)
Q Consensus 594 v~lL~~~------~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 662 (685)
++.|... .+...+..|+.+|..++..-++.+.. .+++.+...+.+.+.+.|..|...+..+..
T Consensus 327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~------~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP------HVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH------HHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH------HHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 6655421 13467889999999998765533222 346788888888888888888877777654
No 129
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=2.3e-06 Score=67.82 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=40.8
Q ss_pred CCCCccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 277 TPDDFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
-.++..|+||++...++++++|||. ||..|+.. ...||+|++.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3557899999999999999999999 99999983 5789999998864
No 130
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.14 E-value=2.4e-05 Score=78.16 Aligned_cols=182 Identities=14% Similarity=0.068 Sum_probs=136.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhcCCch-hhHHHhhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccCcchhHHHHhc
Q 039015 384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFN-RSCLVEVGCIPSLLKLLS-SKDSSTQENAIAALLNLSKHCKSKSMVVES 461 (685)
Q Consensus 384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~-r~~i~~~G~ip~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~ 461 (685)
+.+.+.+.+...|..|+..|..+....+.. ...+ ...++.|...|. +.+..++..|+.+|..|+..-...-.-.-.
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 567788999999999999999998763321 1111 234777888884 889999999999999998532211111124
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-c--
Q 039015 462 GGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG-N-- 538 (685)
Q Consensus 462 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n-- 538 (685)
..++.|+..++.. +..+|..|..+|..+...... ...++.|...|++.++.++..++..|..+....+ .
T Consensus 98 ~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 98 ACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 5789999999988 899999999999998764331 2368888999999999999999999999654322 1
Q ss_pred HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015 539 HWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 539 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~ 577 (685)
-..... ..+|.|+.+| .+.+..++..|..++..++..
T Consensus 170 ~~~~l~-~l~p~l~~~l-~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 170 NKKLLK-LLTTSLVKTL-NEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHHH-HHHHHHHHHH-TSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHh-cCCChHHHHHHHHHHHHHHHH
Confidence 122232 4789999999 788899999999999998764
No 131
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.13 E-value=4.4e-07 Score=95.38 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=42.5
Q ss_pred CCCCCccCcCccccCCCceeccCccc-ccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLSTGHT-YDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~cght-fcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
.+.+++.|+||++.+.+|++++|||+ ||+.|+..| ..||.|+..+..
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 45678999999999999999999999 999999987 689999998864
No 132
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=5e-06 Score=68.04 Aligned_cols=53 Identities=13% Similarity=0.258 Sum_probs=43.4
Q ss_pred CCCCCccCcCccccC--CCceeccCc-----ccccHHHHHHHHHcC-CCCCCCCCccccCC
Q 039015 276 LTPDDFTCPISLEIM--KDPVTLSTG-----HTYDRASILKWFRAG-NSTCPKTGERLQSK 328 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m--~dPv~~~cg-----htfcr~ci~~~~~~~-~~~CP~c~~~l~~~ 328 (685)
...++..|+||++-+ .+|++++|+ |.|...||.+|+... ..+||+|+..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 345567899999776 468888996 999999999999863 46999999988643
No 133
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.97 E-value=1.1e-06 Score=77.31 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=0.4
Q ss_pred CccCcCccccCCCce-----------------e-ccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 280 DFTCPISLEIMKDPV-----------------T-LSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv-----------------~-~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
+-.|+||++.|.+|. . .+|||.|+..||.+|+.. +.+||.|++...
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 358999999998752 2 489999999999999998 789999998753
No 134
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.96 E-value=1.7e-05 Score=98.01 Aligned_cols=230 Identities=14% Similarity=0.132 Sum_probs=159.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh---
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK--- 455 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k--- 455 (685)
..++.|++.|.+.++++|..|+.+|..++..... ..+ ...++.|+..|.+++..++..|+.+|..++..-...
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 4577888889889999999999999999864332 111 235778888888888899999999998887443221
Q ss_pred ---HHHHhcCcHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHH
Q 039015 456 ---SMVVESGGLDFIVDMVKK-GLKVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI 529 (685)
Q Consensus 456 ---~~i~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL 529 (685)
..-.-...++.|+..+.. + +...+..|+.+|..++... .....+ ...++.|+..|.++++.+++.|+.+|
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~-~~~~~~~al~~l~~~~~~~~~~l~~~~---~~ll~~l~~~L~~~~~~vR~~a~~al 199 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFH---PSILTCLLPQLTSPRLAVRKRTIIAL 199 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTTH---HHHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhHhHHHHHH---HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 111234678999999984 5 8899999999999987421 111111 23677788888888889999999999
Q ss_pred HHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHh--cCChHHHHHHhhcCCChhHHH
Q 039015 530 FGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILH--HGALDMIMKILDSCTSRAGKE 607 (685)
Q Consensus 530 ~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~--~g~v~~Lv~lL~~~~s~~~~e 607 (685)
..++...+.. + -...++.|+..|....+...+..++.++..++.... . .+.. ...++.++..+.+. ++.+++
T Consensus 200 ~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~-~-~~~~~l~~l~~~ll~~l~d~-~~~vR~ 273 (1230)
T 1u6g_C 200 GHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-H-RIGEYLEKIIPLVVKFCNVD-DDELRE 273 (1230)
T ss_dssp HHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-G-GGTTSCTTHHHHHHHHHSSC-CTTTHH
T ss_pred HHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH-H-HHHHHHHHHHHHHHHHhcCC-CHHHHH
Confidence 9998755432 1 224578888888554334555667777777765311 1 1211 12378888888776 889999
Q ss_pred HHHHHHHHHhccCcH
Q 039015 608 YCVSLLLALCINGGA 622 (685)
Q Consensus 608 ~a~~~L~~L~~~~~~ 622 (685)
.++.++..++...++
T Consensus 274 ~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 274 YCIQAFESFVRRCPK 288 (1230)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHChH
Confidence 999999998876544
No 135
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.87 E-value=3.2e-06 Score=76.19 Aligned_cols=120 Identities=10% Similarity=0.095 Sum_probs=90.7
Q ss_pred hCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHH
Q 039015 420 VGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKL 499 (685)
Q Consensus 420 ~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 499 (685)
.+.++.|+.+|.++++.++..|+.+|.++.. ..++.|+..|++. ++.+|..|+.+|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC-------
Confidence 4678889999999999999999999887642 1368899999987 99999999999988752
Q ss_pred hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 039015 500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLAT 573 (685)
Q Consensus 500 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~ 573 (685)
.++++.|+.+|.++++.++..|+.+|.++. +..+++.|+.+| .+++..++..|..+|..
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l-~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLA-ETGTGFARKVAVNYLET 130 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHT-TSCCTHHHHHHHHHGGG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHH-hCCCHHHHHHHHHHHHh
Confidence 346899999999999999999999999884 234688899999 57778888888877754
No 136
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.86 E-value=2.2e-06 Score=77.30 Aligned_cols=119 Identities=15% Similarity=0.118 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV 459 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 459 (685)
.++.|+..|.+.++.+|..|+..|..+.. ..++.|+.+|.++++.++..|+++|.++..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------- 71 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------- 71 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence 46778888988888888888877664421 137999999999999999999999998762
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGL 532 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 532 (685)
..+++.|+..|+.+ ++.+|..|+.+|..+. . ..+++.|+.++++.++.++..|+.+|.++
T Consensus 72 -~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~----------~-~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -ERAVEPLIKLLEDD-SGFVRSGAARSLEQIG----------G-ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 34689999999888 8999999999998874 2 45789999999988899999999988653
No 137
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.83 E-value=0.0019 Score=73.79 Aligned_cols=254 Identities=15% Similarity=0.122 Sum_probs=165.8
Q ss_pred hHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchh
Q 039015 378 KLLANFISDRL--LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 378 ~~~i~~Lv~~L--~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
+..++.+.+.| .+.++-+|.+|+.++..+.+.+++. +-..++++.|..+|.+.|+.++.+|+.+|..++.++..
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~- 220 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE- 220 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH-
Confidence 44567778888 7889999999999999999866542 22258999999999999999999999999998765432
Q ss_pred HHHHhcCcHHHHHHHhc----CC-C-----------CHHHHHHHHHHHHHhcCc--hhHHHHhhcCCCcHHHHHHHhcc-
Q 039015 456 SMVVESGGLDFIVDMVK----KG-L-----------KVEARQHAAATLFYIASI--EEYRKLIGENPEAIPALVDMVRD- 516 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~----~~-~-----------~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~~- 516 (685)
.+ ...++.+++.|. .+ . ++-.+.....+|..++.. ++.+..+.+ .++.++..+.+
T Consensus 221 -~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~---~L~~il~~~~~~ 294 (621)
T 2vgl_A 221 -EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE---CLETILNKAQEP 294 (621)
T ss_dssp -HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH---HHHHHHHHHHSC
T ss_pred -HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH---HHHHHHHhhccC
Confidence 11 134455554443 22 1 356788888888888753 244444433 44444443321
Q ss_pred --------CCH--HHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHh
Q 039015 517 --------GTD--RSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILH 586 (685)
Q Consensus 517 --------~~~--~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~ 586 (685)
.+. .+.-.|+.++..+...+ .++. .++..|..+| .+.+..++-.|+..|..++........+.
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L-~~~~~niry~aL~~l~~l~~~~~~~~~~~- 367 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDSEP----NLLV-RACNQLGQFL-QHRETNLRYLALESMCTLASSEFSHEAVK- 367 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHHH-HHHHHHHHHS-SCSCHHHHHHHHHHHHHHTTCTTTHHHHH-
T ss_pred cccccccccchHHHHHHHHHHHHHhcCCcH----HHHH-HHHHHHHHHh-cCCCcchHHHHHHHHHHHHhccCcHHHHH-
Confidence 122 55567778888875322 1222 3567788888 56678899999999999987543223332
Q ss_pred cCChHHHHHHhh-cCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 039015 587 HGALDMIMKILD-SCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRI 659 (685)
Q Consensus 587 ~g~v~~Lv~lL~-~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~ 659 (685)
.-...++..++ +. ++.++..++.+|..++.. .++... +.-|...+.+.+...++.+..-+..
T Consensus 368 -~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~~--~Nv~~I-------v~eL~~yl~~~d~~~~~~~v~~I~~ 430 (621)
T 2vgl_A 368 -THIETVINALKTER-DVSVRQRAVDLLYAMCDR--SNAQQI-------VAEMLSYLETADYSIREEIVLKVAI 430 (621)
T ss_dssp -TTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCH--HHHHHH-------HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhccCC-CHhHHHHHHHHHHHHcCh--hhHHHH-------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 23566777777 66 888999999999999865 333333 2256666666666655554433333
No 138
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.82 E-value=0.0011 Score=75.81 Aligned_cols=256 Identities=11% Similarity=0.091 Sum_probs=174.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhh--cCCCHHHHHHHHHHhhccccCcchh
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL--SSKDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL--~s~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
...+..+.+.|.+.++-.+.-|+..|..+.. ++ +.+ ..+|.+.++| .+.++-++..|+.++..+....+.
T Consensus 110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~- 181 (621)
T 2vgl_A 110 RLINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD- 181 (621)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG-
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh-
Confidence 4568888999999999999999999988853 22 332 4578888999 889999999999999998864332
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc----cC-------------C
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR----DG-------------T 518 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~----~~-------------~ 518 (685)
.+-..+.++.+..+|... ++.++.+|+.+|..++..+.. .+ ...+|.+++.|. .+ +
T Consensus 182 -~~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~~~--~~---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 182 -LVPMGDWTSRVVHLLNDQ-HLGVVTAATSLITTLAQKNPE--EF---KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp -GCCCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCHH--HH---TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred -hcCchhHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhChH--HH---HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 222358999999999877 899999999999998764421 11 235555555443 22 5
Q ss_pred HHHHHHHHHHHHHhcCCCC--cHHHHHhcCChHHHHHHhccCC----------ChhHHHHHHHHHHHHhcChhcHHHHHh
Q 039015 519 DRSKKNALVAIFGLLMHSG--NHWRFLAAGAVPLLLNLLTSSD----------SEELITDSLAVLATLAEKLDGTIAILH 586 (685)
Q Consensus 519 ~~~~~~A~~aL~nLs~~~~--n~~~iv~~G~v~~Lv~lL~~~~----------~~~~~~~al~~L~~La~~~~~~~~i~~ 586 (685)
+-++...+..|..++..++ .+..+.+ .++.++..+...+ ...+.-+|+.++..+...++-..
T Consensus 255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~---- 328 (621)
T 2vgl_A 255 PWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV---- 328 (621)
T ss_dssp HHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH----
T ss_pred chHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH----
Confidence 6788888888888775332 2333332 2333333321111 22677778888888865443222
Q ss_pred cCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHh-cCChHHHHHHHHHHHHHH
Q 039015 587 HGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLS-QGSSRASKKASALIRILH 661 (685)
Q Consensus 587 ~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-~g~~~~k~~A~~lL~~l~ 661 (685)
.++..|..++.+. ++.++..|+..|..++...+. ...+.. ....++..+. +.+..++++|..+|..+.
T Consensus 329 -~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~--~~~~~~---~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 329 -RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS--HEAVKT---HIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp -HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT--HHHHHT---THHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc--HHHHHH---HHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 2356788888766 889999999999999987542 112222 2567777777 778888888777765553
No 139
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.81 E-value=7e-05 Score=75.39 Aligned_cols=189 Identities=11% Similarity=0.097 Sum_probs=134.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHH-HhhcCCchhhHHHh-hCCHHHHHHhh-cCCCHHHHHHHHHHhhccccCcc-hhHH-HH
Q 039015 385 SDRLLEGTSEEKNKVAYEVRL-LTKSSIFNRSCLVE-VGCIPSLLKLL-SSKDSSTQENAIAALLNLSKHCK-SKSM-VV 459 (685)
Q Consensus 385 v~~L~s~~~~~~~~a~~~L~~-La~~~~~~r~~i~~-~G~ip~Lv~lL-~s~~~~~~~~A~~aL~nLs~~~~-~k~~-i~ 459 (685)
-+.+.|.++..|..|+..|.. +..+.+.....-.+ ...+..|...| +..+..++..|+.+|..|+.+-. ..-. =.
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 466789999999999999999 87543321100111 13466777888 67899999999999999984322 1110 11
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHh-hcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 039015 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLI-GENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGN 538 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i-~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 538 (685)
-.-.++.++..++.. ...++..+..+|..++..-+. ... ..-...++.|+..|++.++.++..++.+|..+......
T Consensus 102 ~~~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 133688999999887 788999888888887653211 111 10024788899999999999999999999988854432
Q ss_pred H-HH---HHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 039015 539 H-WR---FLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAE 576 (685)
Q Consensus 539 ~-~~---iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~ 576 (685)
. .. .+....+|.|.++| .+.+..++..|..+|..++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l-~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIV-NDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 1 22 22356899999999 78889999999999998865
No 140
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.75 E-value=0.00025 Score=70.59 Aligned_cols=185 Identities=15% Similarity=0.108 Sum_probs=133.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCc-hhHHHHhhcCCCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCcHHHHH
Q 039015 466 FIVDMVKKGLKVEARQHAAATLFYIASI-EEYRKLIGENPEAIPALVDMVR-DGTDRSKKNALVAIFGLLMHSGNHWRFL 543 (685)
Q Consensus 466 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv 543 (685)
.+.+.+.+. ++..|..|+..|..+... +... -......++.|..++. +.+..++..|+.+|..|+..-...-.-.
T Consensus 19 ~l~~~l~s~-~w~~R~~a~~~L~~l~~~~~~~~--~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEK-KWTLRKESLEVLEKLLTDHPKLE--NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHTCS-SHHHHHHHHHHHHHHHHHCSSBC--CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHhhhccC-CHHHHHHHHHHHHHHHccCCCCC--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 466777777 899999999999988764 2211 0111246788888884 8889999999999999984322111112
Q ss_pred hcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccC-cH
Q 039015 544 AAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCING-GA 622 (685)
Q Consensus 544 ~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~-~~ 622 (685)
-..+++.|+..+ .+.+..+++.|..+|..++.... -.. .++.+...+++. ++.++..++..|..+.... ++
T Consensus 96 ~~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~-~~~-----ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 96 ASACVPSLLEKF-KEKKPNVVTALREAIDAIYASTS-LEA-----QQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC-HHH-----HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC-HHH-----HHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 233788899998 67788999999999999987532 111 256777788887 9999999999999965443 22
Q ss_pred H-HHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015 623 N-VVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 623 ~-~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 664 (685)
. ....+ ..++|.|..++.+....+|..|...+..+....
T Consensus 168 ~~~~~~l---~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 168 ALNKKLL---KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp GCCHHHH---HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHH---HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 1 12222 235889999999999999999998888877654
No 141
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.70 E-value=0.00059 Score=66.33 Aligned_cols=223 Identities=17% Similarity=0.125 Sum_probs=161.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH-HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHH
Q 039015 422 CIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV-VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKL 499 (685)
Q Consensus 422 ~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i-~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~ 499 (685)
.+..|..+|...|..++.+|+.+|-++-+.-+..... .-...++.++.++++. +..+...|+.+|..|-.+- -....
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHHH
Confidence 5678899999999999999999999998775442222 2356799999999888 9999999999999886544 23344
Q ss_pred hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChh
Q 039015 500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLD 579 (685)
Q Consensus 500 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~ 579 (685)
+.. .+.+|.++++++++-....|+..|..|..-...+ +++..+..++ .+.+..++..++.+|.+++...+
T Consensus 113 y~K---l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 113 FLK---AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHH---HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHH---HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccC
Confidence 434 6789999999999999999999999983322222 2456788888 78899999999999999988432
Q ss_pred cHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccC-cHHHHHHHHhcCCcHHHHHHHH-hcCChHHHHHHHHHH
Q 039015 580 GTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCING-GANVVALLVKSPSLMGSLYSLL-SQGSSRASKKASALI 657 (685)
Q Consensus 580 ~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~-~~~~~~~l~~~~g~i~~L~~Ll-~~g~~~~k~~A~~lL 657 (685)
...-+ .+.+..+-.++++. ++...+.|+.+|..+.... .++....+.. +....-.+. ..|.|..+.+|.-..
T Consensus 183 D~~i~--~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~pi~~~~~~~~~~---~~~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 183 DSGHL--TLILDEIPSLLQND-NEFIVELALDVLEKALSFPLLENVKIELLK---ISRIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp SCCCG--GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTSCCCSCCHHHHHH---HHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred CHHHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCcccHhHHHHHHH---HHHHHHHHHHhcCChhHHHHHHHHH
Confidence 11111 12234455678887 9999999999999988753 1222222221 122333444 578888888888776
Q ss_pred HHHH
Q 039015 658 RILH 661 (685)
Q Consensus 658 ~~l~ 661 (685)
..+.
T Consensus 257 ~~le 260 (265)
T 3b2a_A 257 DLID 260 (265)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 142
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.64 E-value=0.00074 Score=69.57 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=125.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH-HhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRL-LTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~-La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
.+..++.+|.+++.+.++.++..|+. +. .+..--..|++.||+..|+++....+..++..++++|.+|-.+.++-..+
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q-~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQ-EDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-TCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhh-cchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 36677788888899999999999998 55 47788888999999999999999999999999999999999999998777
Q ss_pred H-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh-HHHHhhc---------CCCcHHHHHHHhc---cCCHHHHHH
Q 039015 459 V-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE-YRKLIGE---------NPEAIPALVDMVR---DGTDRSKKN 524 (685)
Q Consensus 459 ~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~---------~~g~i~~Lv~lL~---~~~~~~~~~ 524 (685)
+ ....|.-|..++.+. ...+...|..+|..++...+ +...+.. ..--+..|+.+|+ +++.+.+.+
T Consensus 198 vs~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hCCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 7 567899999999976 89999999999999976653 2222221 0123789999997 678899999
Q ss_pred HHHHHHHhcC
Q 039015 525 ALVAIFGLLM 534 (685)
Q Consensus 525 A~~aL~nLs~ 534 (685)
|...|-.+..
T Consensus 277 amtLIN~lL~ 286 (339)
T 3dad_A 277 TVTLINKTLA 286 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8887766653
No 143
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.45 E-value=0.0068 Score=71.06 Aligned_cols=235 Identities=12% Similarity=0.085 Sum_probs=154.9
Q ss_pred HHHHHHHHhcCCC--------HHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC
Q 039015 380 LANFISDRLLEGT--------SEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH 451 (685)
Q Consensus 380 ~i~~Lv~~L~s~~--------~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~ 451 (685)
.+..|...|.+.+ +.++..|+-.|....-++ .+. .+++.|..+|.+++..+.+.|+-+|.-+-..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS--~~e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS--ANI-----EVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC--CCH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC--CCH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 4566666665444 456667777777654322 122 2356788888777776676777776655333
Q ss_pred cchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc-CCHHHHHHHHHHHH
Q 039015 452 CKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRD-GTDRSKKNALVAIF 530 (685)
Q Consensus 452 ~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~ 530 (685)
..|. .++..|++.+....+..++..++-.|..+... . ...++.+++.|.. .++-++..|+.++.
T Consensus 503 Tgn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g--------~-~e~~~~li~~L~~~~dp~vRygaa~alg 567 (963)
T 4ady_A 503 TGKP------EAIHDMFTYSQETQHGNITRGLAVGLALINYG--------R-QELADDLITKMLASDESLLRYGGAFTIA 567 (963)
T ss_dssp CCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--------C-GGGGHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cCCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC--------C-hHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3322 23566666655444778888887777766432 2 4568888888875 55677777777776
Q ss_pred HhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHH
Q 039015 531 GLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYC 609 (685)
Q Consensus 531 nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a 609 (685)
--....+|.. +|+.|++.+.++.++.++..|+..|+.++.... ..++.++. +++.+ ++.++..|
T Consensus 568 lAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~-d~~VR~gA 632 (963)
T 4ady_A 568 LAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSH-NAHVRCGT 632 (963)
T ss_dssp HHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCS-CHHHHHHH
T ss_pred HHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcC-CHHHHHHH
Confidence 5555666643 466688887677788899999999998876532 34777887 55556 99999999
Q ss_pred HHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 039015 610 VSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRIL 660 (685)
Q Consensus 610 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l 660 (685)
+.+|..+|..++.. . ++..|..++++.++.+++.|.-.|..+
T Consensus 633 alALGli~aGn~~~---~------aid~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 633 AFALGIACAGKGLQ---S------AIDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp HHHHHHHTSSSCCH---H------HHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCcH---H------HHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 99999999776431 1 134666677777777776666555544
No 144
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.41 E-value=0.0043 Score=63.91 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=121.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH-hcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHh
Q 039015 508 PALVDMVRDGTDRSKKNALVAIFG-LLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILH 586 (685)
Q Consensus 508 ~~Lv~lL~~~~~~~~~~A~~aL~n-Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~ 586 (685)
..+++-|.+++.+.++.++.-|.. +..+......++..+++..|+.+. ...+.....-++.+|.+|-.+..|...|+.
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi-~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVG-AAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHH-TTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHH-HhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 344566677888889999999988 667788999999999999999999 566889999999999999999999988887
Q ss_pred cC-ChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHH---HHHH-----hcCCcHHHHHHHHh---cCChHHHHHHH
Q 039015 587 HG-ALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVV---ALLV-----KSPSLMGSLYSLLS---QGSSRASKKAS 654 (685)
Q Consensus 587 ~g-~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~---~~l~-----~~~g~i~~L~~Ll~---~g~~~~k~~A~ 654 (685)
+. .|..+..++.+. .+.+...|+++|..+|..++.... +.+. .+.-....|+.+++ +++...+.+|-
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 65 488888888865 889999999999999987642221 1111 11224678888997 67888999999
Q ss_pred HHHHHHHH
Q 039015 655 ALIRILHE 662 (685)
Q Consensus 655 ~lL~~l~~ 662 (685)
+|++-+-.
T Consensus 279 tLIN~lL~ 286 (339)
T 3dad_A 279 TLINKTLA 286 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98876643
No 145
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.39 E-value=0.00017 Score=57.64 Aligned_cols=50 Identities=14% Similarity=0.333 Sum_probs=40.2
Q ss_pred CCCccCcCccccCCCceec-cCcccccHHHHHHHHHcC-CCCCCCCCccccC
Q 039015 278 PDDFTCPISLEIMKDPVTL-STGHTYDRASILKWFRAG-NSTCPKTGERLQS 327 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~~-~~~CP~c~~~l~~ 327 (685)
...-.|.||.+.+..-..- .|+|.|...||.+||+.. ..+||.|+.....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4457899999998754433 799999999999999862 3799999987653
No 146
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0014 Score=65.70 Aligned_cols=190 Identities=12% Similarity=0.097 Sum_probs=130.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH-hcCc-hhHHHHhhcCCCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCC---CcH-
Q 039015 467 IVDMVKKGLKVEARQHAAATLFY-IASI-EEYRKLIGENPEAIPALVDMV-RDGTDRSKKNALVAIFGLLMHS---GNH- 539 (685)
Q Consensus 467 Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~-~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~---~n~- 539 (685)
+...+.+. ++..|..|+..|.. +... ++.....+.....+..|...+ ++.+..++..|+.+|..|+..- +..
T Consensus 21 f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34556677 89999999999998 8642 221100111123677888888 6778899999999999998422 211
Q ss_pred HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHh-c-CChHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 039015 540 WRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILH-H-GALDMIMKILDSCTSRAGKEYCVSLLLALC 617 (685)
Q Consensus 540 ~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~-~-g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~ 617 (685)
... .-++|.++..+ .+....+++.+..+|..++.+-.- ..... - ..++.|...|++. ++.+++.++.+|..++
T Consensus 100 ~y~--~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 100 DYV--SLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASM 174 (249)
T ss_dssp HHH--HHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHH
Confidence 111 12688899998 566788889988888888763210 00000 0 1246677788887 9999999999999998
Q ss_pred ccCcH---HHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015 618 INGGA---NVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 618 ~~~~~---~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 664 (685)
...+. ..... .. ..++|.|..++.+.++.+|..|...+..+.+.-
T Consensus 175 ~~~~~~~~~l~~~-l~-~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 175 KEEKDGYSTLQRY-LK-DEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HHCCSCSHHHHHH-HT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCcchhHHHH-HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 76542 22222 21 367999999999999999999999888876653
No 147
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.28 E-value=0.014 Score=69.22 Aligned_cols=267 Identities=14% Similarity=0.138 Sum_probs=176.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc-hhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC-cchhHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF-NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH-CKSKSM 457 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~-~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~ 457 (685)
.+..|.+.+...... ..|+..+..++..... ....-.-.+.+|.++..+.+.+..++..|-.++..+... +.+..
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~- 131 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI- 131 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-
Confidence 456666666433222 7888889999854422 111222226789999999888889998888777666422 22221
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc-CCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE-NPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS 536 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 536 (685)
...+|.|+..|.++..+..+..|..++..|+... ...++. -+..||.+-+.+-+..+++++.|..++-.+|..-
T Consensus 132 ---~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~ 206 (986)
T 2iw3_A 132 ---KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV 206 (986)
T ss_dssp ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC
T ss_pred ---HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC
Confidence 4568899999986647999999999999998643 222322 1457888888888888999999999999998766
Q ss_pred CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015 537 GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLAL 616 (685)
Q Consensus 537 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L 616 (685)
+|+.. ...+|.|++.+. ++ .-..+++..|..-..-.+.-..-+. =-+|.|.+-|+.. +...+..++-++-|+
T Consensus 207 ~n~d~---~~~~~~~~~~~~-~p--~~~~~~~~~l~~~tfv~~v~~~~l~-~~~p~l~r~l~~~-~~~~~r~~~~~~~n~ 278 (986)
T 2iw3_A 207 DNKDI---ERFIPSLIQCIA-DP--TEVPETVHLLGATTFVAEVTPATLS-IMVPLLSRGLNER-ETGIKRKSAVIIDNM 278 (986)
T ss_dssp CCTTT---GGGHHHHHHHHH-CT--THHHHHHHHHTTCCCCSCCCHHHHH-HHHHHHHHHHTSS-SHHHHHHHHHHHHHH
T ss_pred CCcch---hhhHHHHHHHhc-Ch--hhhHHHHHHhhcCeeEeeecchhHH-HHHHHHHhhhccC-cchhheeeEEEEcch
Confidence 66642 346888999993 33 2245554444433222221111100 0146666666665 778889999999999
Q ss_pred hcc--CcHHHHHHHHhcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhc
Q 039015 617 CIN--GGANVVALLVKSPSLMGSLYSLLSQ-GSSRASKKASALIRILHEFYE 665 (685)
Q Consensus 617 ~~~--~~~~~~~~l~~~~g~i~~L~~Ll~~-g~~~~k~~A~~lL~~l~~~~~ 665 (685)
|.- ++..+...+ +.++|.|...... ..|.+++.|...+..|.+...
T Consensus 279 ~~lv~~~~~~~~f~---~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 279 CKLVEDPQVIAPFL---GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HTTCCCHHHHHHHH---TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcCCHHHHhhhh---hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 974 333443333 5678887776655 478999999999999988644
No 148
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.15 E-value=0.00036 Score=53.51 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=39.9
Q ss_pred CCccCcCccccCCCceeccCc--c---cccHHHHHHHHHc-CCCCCCCCCcccc
Q 039015 279 DDFTCPISLEIMKDPVTLSTG--H---TYDRASILKWFRA-GNSTCPKTGERLQ 326 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~~cg--h---tfcr~ci~~~~~~-~~~~CP~c~~~l~ 326 (685)
+.-.|.||++-..+|.+.||. + .|.+.|+.+|+.. ++.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456899999888888888865 3 7999999999984 6789999998765
No 149
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.14 E-value=0.0003 Score=58.61 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=39.1
Q ss_pred cCcCccccCCCce-eccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 282 TCPISLEIMKDPV-TLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 282 ~CpIc~~~m~dPv-~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
.|++|.-.+..-. ++||+|.||..|+..|...+..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5888887777543 569999999999999998888999999988763
No 150
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.12 E-value=0.0051 Score=64.75 Aligned_cols=239 Identities=11% Similarity=0.065 Sum_probs=132.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
..+..|.+.+.++++-.|-.|++.|..+.. ++.-+ ...+.+.+.|.+.++-++..|+-+...|...... .+
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~v 174 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--VV 174 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--HH
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--HH
Confidence 457889999999999999999999998874 33222 2356677888899999999999999888754432 22
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccC---CHHHHHHHHHHHHHhcCC
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDG---TDRSKKNALVAIFGLLMH 535 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~A~~aL~nLs~~ 535 (685)
.+.+..+-.++... ++.+..+|.++|..+...+. .++..|+.-+..+ ++-+...-+..+..++..
T Consensus 175 --~~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~ 242 (355)
T 3tjz_B 175 --KRWVNEAQEAASSD-NIMVQYHALGLLYHVRKNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLED 242 (355)
T ss_dssp --HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---
T ss_pred --HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccc
Confidence 36889999999888 89999999999999976541 1355556655443 354444444444444332
Q ss_pred CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015 536 SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLA 615 (685)
Q Consensus 536 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~ 615 (685)
++ .-.....++.|...| .+.++.+.-+|+.++..+...+. .+. ..++..|..++.++ ++.++-.|+..|..
T Consensus 243 d~---~~~~~~~~~~l~~~L-~~~~~aVvyEa~k~I~~l~~~~~---~~~-~~a~~~L~~fLss~-d~niryvaLr~L~~ 313 (355)
T 3tjz_B 243 ED---GSRDSPLFDFIESCL-RNKHEMVVYEAASAIVNLPGCSA---KEL-APAVSVLQLFCSSP-KAALRYAAVRTLNK 313 (355)
T ss_dssp -----------------CCC-CCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSS-SSSSHHHHHHCC--
T ss_pred cc---hhhHHHHHHHHHHHH-cCCChHHHHHHHHHHHhccCCCH---HHH-HHHHHHHHHHHcCC-CchHHHHHHHHHHH
Confidence 21 012234566677777 56678888899999888855322 122 23466677788876 88999999999999
Q ss_pred HhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHH
Q 039015 616 LCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKAS 654 (685)
Q Consensus 616 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~ 654 (685)
+....+.. .+.. -.-+.+++.+++..+...|-
T Consensus 314 l~~~~P~~-v~~~------n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 314 VAMKHPSA-VTAC------NLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp ---------------------------------------
T ss_pred HHHHCcHH-HHHH------HHHHHHHccCCcHhHHHHHH
Confidence 88876433 2222 22577788888776665443
No 151
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.07 E-value=0.016 Score=62.64 Aligned_cols=232 Identities=14% Similarity=0.081 Sum_probs=151.4
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHhhcCCchhhHHHhhC--CHHHHHHhhcC---------------C--CHHHHHHHH
Q 039015 383 FISDRLLE-GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVG--CIPSLLKLLSS---------------K--DSSTQENAI 442 (685)
Q Consensus 383 ~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G--~ip~Lv~lL~s---------------~--~~~~~~~A~ 442 (685)
.+...|.+ ++.+.+--++.+|..|.. .+++|..+.+.+ .+|.++.++.. + ...++-+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 45556654 345556678999999987 678999888653 47777654431 1 245678889
Q ss_pred HHhhccccCcchhHHHHhcCcH--HHHHHHhcCCCCHHHHHHHHHHHHHhcCch-----hH-HHHhhcCCCcHHHHHHHh
Q 039015 443 AALLNLSKHCKSKSMVVESGGL--DFIVDMVKKGLKVEARQHAAATLFYIASIE-----EY-RKLIGENPEAIPALVDMV 514 (685)
Q Consensus 443 ~aL~nLs~~~~~k~~i~~~g~i--~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-----~~-~~~i~~~~g~i~~Lv~lL 514 (685)
-++.-||.+++....+...+.. ..|+.+++......+...+.++|.||.... .. ...+.. .++ +.++..|
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~-~~~-l~~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL-GNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH-HCH-HHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHH-ccc-hHHHHHH
Confidence 9999999998877777766644 677888887656788889999999998754 11 222322 233 5566666
Q ss_pred cc---CCHHHHHHHHH-------HHHHhcCC---------------CC---------cHHHHHhc--CChHHHHHHhcc-
Q 039015 515 RD---GTDRSKKNALV-------AIFGLLMH---------------SG---------NHWRFLAA--GAVPLLLNLLTS- 557 (685)
Q Consensus 515 ~~---~~~~~~~~A~~-------aL~nLs~~---------------~~---------n~~~iv~~--G~v~~Lv~lL~~- 557 (685)
.. ++++...+--. .+..|++. +- |..++-+. .++..|+++|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 54 34444332211 11222211 11 22223221 257789999953
Q ss_pred --------CCChhHHHHHHHHHHHHhc-ChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 039015 558 --------SDSEELITDSLAVLATLAE-KLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCI 618 (685)
Q Consensus 558 --------~~~~~~~~~al~~L~~La~-~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~ 618 (685)
+.++.+..-|+-=+..++. .|.|+..+-+.|+=..++++|.+. ++.++.+|+.++..+-.
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 1245555555656666666 699999888888888889999987 99999999998876654
No 152
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.06 E-value=0.032 Score=60.31 Aligned_cols=235 Identities=12% Similarity=0.121 Sum_probs=154.2
Q ss_pred HHHHhhcC-CCHHHHHHHHHHhhccccCcchhHHHHhcC--cHHHHHHHhcC----------------CCCHHHHHHHHH
Q 039015 425 SLLKLLSS-KDSSTQENAIAALLNLSKHCKSKSMVVESG--GLDFIVDMVKK----------------GLKVEARQHAAA 485 (685)
Q Consensus 425 ~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g--~i~~Lv~lL~~----------------~~~~e~~~~Aa~ 485 (685)
.++..|.. .+...+.-++.+|..|...++.|..+.+.+ .++.++.+++. +.....+-+++-
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 34455554 345667788999999999899999998543 36777655441 112456788999
Q ss_pred HHHHhcCchhHHHHhhcCCCcH--HHHHHHhccC-CHHHHHHHHHHHHHhcCCCC-cH----HHHHhcCChHHHHHHhcc
Q 039015 486 TLFYIASIEEYRKLIGENPEAI--PALVDMVRDG-TDRSKKNALVAIFGLLMHSG-NH----WRFLAAGAVPLLLNLLTS 557 (685)
Q Consensus 486 ~L~~Ls~~~~~~~~i~~~~g~i--~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~-n~----~~iv~~G~v~~Lv~lL~~ 557 (685)
+++-|++.++....+.. .+.+ +.|+++++.. ...+..-++.+|.||..... +. ..++-.|.++.+++.|..
T Consensus 251 ~iWlLSF~~~~~~~l~~-~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQ-KYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHT-TSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHh-cchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhh
Confidence 99999999998888876 5543 6778888764 47888899999999987542 22 223322333566777643
Q ss_pred C--CChhHHHHHHHHHHHHhc----------------------ChhcHH---------HHHhcCC--hHHHHHHhhc---
Q 039015 558 S--DSEELITDSLAVLATLAE----------------------KLDGTI---------AILHHGA--LDMIMKILDS--- 599 (685)
Q Consensus 558 ~--~~~~~~~~al~~L~~La~----------------------~~~~~~---------~i~~~g~--v~~Lv~lL~~--- 599 (685)
. .++++.+..-.+...|.. +|..+. .+-+.+. +..|+++|.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 3 356666554444444432 122221 2322222 5788888873
Q ss_pred ------CCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 039015 600 ------CTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHE 662 (685)
Q Consensus 600 ------~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 662 (685)
.+++.+..-|+-=+..++.+-| ..+..+.+ -|+-..+..|+.+.++.++..|-..++-+=.
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P-~gr~i~~~-lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLP-ESIDVLDK-TGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCT-THHHHHHH-HSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCc-chhHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1145566667777788887764 44555555 7889999999999999999888777665533
No 153
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.04 E-value=0.14 Score=47.93 Aligned_cols=212 Identities=20% Similarity=0.182 Sum_probs=142.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhccccCc-chhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHH
Q 039015 421 GCIPSLLKLLSSKDSSTQENAIAALLNLSKHC-KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKL 499 (685)
Q Consensus 421 G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 499 (685)
..+..++.+|+++--.+|.+|+.++.+++..- +-.+. .+..|+.+++.......-...+.++.-++... ..
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---Pe 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---PE 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---HH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhC---HH
Confidence 45778889998877789999999999988543 22322 34556666666557777666677777776432 22
Q ss_pred hhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCh
Q 039015 500 IGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH-SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKL 578 (685)
Q Consensus 500 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~ 578 (685)
+. .+.+|.|..=.+-|++..+.+-..+|-.+... ++.- .+++.-+..+| ++++..-+-.|+..+..+..+
T Consensus 104 ~v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~sml-tskd~~Dkl~aLnFi~alGen- 174 (253)
T 2db0_A 104 LV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSML-SSKNREDKLTALNFIEAMGEN- 174 (253)
T ss_dssp HH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHT-SCSSHHHHHHHHHHHHTCCTT-
T ss_pred HH--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHh-cCCChHHHHHHHHHHHHHhcc-
Confidence 22 24678888878889999999999999888643 3222 23455578888 566655555566665555442
Q ss_pred hcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 039015 579 DGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIR 658 (685)
Q Consensus 579 ~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~ 658 (685)
+-.- -...+|.|..+|.++ +.-++..|+.+|.+++..++ ..+.++.. -++=+.+.++-.+.+...-|.
T Consensus 175 -~~~y--v~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~np-klRkii~~-------kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 175 -SFKY--VNPFLPRIINLLHDG-DEIVRASAVEALVHLATLND-KLRKVVIK-------RLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp -THHH--HGGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCH-HHHHHHHH-------HHHHCCCSCHHHHHHHHHHHH
T ss_pred -Cccc--cCcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCH-HHHHHHHH-------HHHHhcCcHHHHHHHHHHHHH
Confidence 1111 134689999999998 99999999999999998874 45555432 334455666666666555554
Q ss_pred HHH
Q 039015 659 ILH 661 (685)
Q Consensus 659 ~l~ 661 (685)
.+.
T Consensus 243 rl~ 245 (253)
T 2db0_A 243 RLL 245 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 154
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.85 E-value=0.00022 Score=73.00 Aligned_cols=50 Identities=18% Similarity=0.445 Sum_probs=39.7
Q ss_pred CCCccCcCccccCCC----cee----ccCcccccHHHHHHHHHcC----------CCCCCCCCccccC
Q 039015 278 PDDFTCPISLEIMKD----PVT----LSTGHTYDRASILKWFRAG----------NSTCPKTGERLQS 327 (685)
Q Consensus 278 ~~~~~CpIc~~~m~d----Pv~----~~cghtfcr~ci~~~~~~~----------~~~CP~c~~~l~~ 327 (685)
.....|+||...+.+ |-. ..|||.|...|+.+||... ..+||.|+++++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 345789999999887 432 2699999999999999851 1479999998763
No 155
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.64 E-value=0.0047 Score=65.04 Aligned_cols=210 Identities=15% Similarity=0.100 Sum_probs=108.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
...+.+.+.|.+.++-++..|+-+...|...+++ +++ ++++.+-+++.+.++.++-+|+.+|..+..++.
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe----~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~----- 208 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD----VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR----- 208 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH----HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH----HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch-----
Confidence 4567778888999999999999998888865544 333 789999999999999999999999999986542
Q ss_pred HhcCcHHHHHHHhcCC-C-CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015 459 VESGGLDFIVDMVKKG-L-KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS 536 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~-~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 536 (685)
.++..++..+..+ . ++-.+..-...+..+...++.. .....++.|..+|++.++.+.-.|+.+|..+...+
T Consensus 209 ---~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~ 281 (355)
T 3tjz_B 209 ---LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS 281 (355)
T ss_dssp ---HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Confidence 1455566666554 1 2333443333333333322111 11456778888889989999999999999885532
Q ss_pred CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015 537 GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLA 615 (685)
Q Consensus 537 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~ 615 (685)
.. .-..++..|..+| ++++..++-.|+..|..++....+.-+.. -..+..++.++ +......|+..|..
T Consensus 282 ~~----~~~~a~~~L~~fL-ss~d~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~-n~sI~t~Aittllk 350 (355)
T 3tjz_B 282 AK----ELAPAVSVLQLFC-SSPKAALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDA-NRSIATLAITTLLK 350 (355)
T ss_dssp ----------CCCTHHHHH-HSSSSSSHHHHHHCC--------------------------------------------
T ss_pred HH----HHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCC-cHhHHHHHHHHhhh
Confidence 21 2244577777778 56677888889988888877433222211 13355567666 76676677766654
No 156
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.52 E-value=0.031 Score=66.20 Aligned_cols=259 Identities=15% Similarity=0.164 Sum_probs=172.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch---hHH
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS---KSM 457 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~---k~~ 457 (685)
+..+++.++..+.+.+..|+..|..+...+... .....|.+..|.+.+...... +.|+.++..|+..... -+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~ 91 (986)
T 2iw3_A 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP 91 (986)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc
Confidence 444677777655666778888888877533222 122246788888888764333 8888888888754422 222
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhcCCCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCC
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGENPEAIPALVDMVRDG-TDRSKKNALVAIFGLLMH 535 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~ 535 (685)
.. -+.++.++..+... ...+|..|..++..+...- .+.. ..++|.|+..|.++ ..+.|..|+.+|-.|+..
T Consensus 92 ~~-~~~~~~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 92 YI-VQLVPAICTNAGNK-DKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HH-HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred ch-HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 22 25688888887766 6788887777776664321 1111 23689999988765 589999999999999864
Q ss_pred CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015 536 SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLA 615 (685)
Q Consensus 536 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~ 615 (685)
........=-.+||.+.+.+ -+..+++...|..++..+|..-.+++. ...+|.|++.+..+ .....++-.|..
T Consensus 165 ~~~~~~~~~~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p---~~~~~~~~~l~~ 237 (986)
T 2iw3_A 165 AKDQVALRMPELIPVLSETM-WDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADP---TEVPETVHLLGA 237 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCT---THHHHHHHHHTT
T ss_pred hHHHHHHhccchhcchHhhc-ccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcCh---hhhHHHHHHhhc
Confidence 42221112235788888888 678899999999999999885444432 13489999988743 445566666654
Q ss_pred HhccC--cHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 616 LCING--GANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 616 L~~~~--~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
.+.=. ..-.... ++|+|..=+...+...+|+++-+..+|.+.
T Consensus 238 ~tfv~~v~~~~l~~------~~p~l~r~l~~~~~~~~r~~~~~~~n~~~l 281 (986)
T 2iw3_A 238 TTFVAEVTPATLSI------MVPLLSRGLNERETGIKRKSAVIIDNMCKL 281 (986)
T ss_dssp CCCCSCCCHHHHHH------HHHHHHHHHTSSSHHHHHHHHHHHHHHHTT
T ss_pred CeeEeeecchhHHH------HHHHHHhhhccCcchhheeeEEEEcchhhh
Confidence 43321 1111122 267888888888888999999999998875
No 157
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.39 E-value=0.96 Score=53.15 Aligned_cols=206 Identities=13% Similarity=0.106 Sum_probs=128.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhh-cCCCHHHHHHHHHHhhccccCcchhHHH
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL-SSKDSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL-~s~~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
.++.|...|...+...+..|+..|..+--+. .|.. ++..|+..+ .+.+..++..++.+|..+...
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g------- 538 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG------- 538 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-------
Confidence 3455555555454444444555555443211 1211 234455433 345566777777776654432
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCC
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR-DGTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~ 537 (685)
+...++.+++.|....++-+|..++.++.--.....+ ..+|+.|++.+. +.+..++..|+.+|..+....+
T Consensus 539 -~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 539 -RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp -CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred -ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 3456778888887654667766665555422221121 235676777665 4457888899999998776553
Q ss_pred cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 039015 538 NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALC 617 (685)
Q Consensus 538 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~ 617 (685)
..++.++.+|..+.++.++..|..+|..++....... ++..|..++++. ...++..|+-+|..+.
T Consensus 611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~------aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS------AIDVLDPLTKDP-VDFVRQAAMIALSMIL 675 (963)
T ss_dssp --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH------HHHHHHHHHTCS-SHHHHHHHHHHHHHHS
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH------HHHHHHHHccCC-CHHHHHHHHHHHHHHh
Confidence 3577788877677789999999999999865433222 235566677776 9999999999999988
Q ss_pred ccCcH
Q 039015 618 INGGA 622 (685)
Q Consensus 618 ~~~~~ 622 (685)
...++
T Consensus 676 ~gtnn 680 (963)
T 4ady_A 676 IQQTE 680 (963)
T ss_dssp TTCCT
T ss_pred cCCcc
Confidence 76543
No 158
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.11 Score=52.36 Aligned_cols=185 Identities=11% Similarity=0.164 Sum_probs=122.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhcCCchh--h-HHHhh-CCHHHHHHhhcCCCHHHHHHHHHHhhccccCc---c-hh
Q 039015 384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFNR--S-CLVEV-GCIPSLLKLLSSKDSSTQENAIAALLNLSKHC---K-SK 455 (685)
Q Consensus 384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r--~-~i~~~-G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~---~-~k 455 (685)
|-+.|.|.+...|..|+..|..+........ . .+... ..++.+-..+.+.|..++..++.+|..+...- . .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4578999999999999999988765332111 1 11112 34556667888899999999999988776432 1 12
Q ss_pred H--HHHhcCcHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015 456 S--MVVESGGLDFIVDM-VKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGL 532 (685)
Q Consensus 456 ~--~i~~~g~i~~Lv~l-L~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 532 (685)
. ...-..+++.|+.- |.++ ...++..|..++..+....... ..+++.++..+.+.++.++..++..|..+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 2 22235567777764 6666 7888888888887765322111 11355666777888999999999888887
Q ss_pred cCCC--C--cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015 533 LMHS--G--NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 533 s~~~--~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~ 577 (685)
...- . +....+ ..+++.+..+| .+.+..+++.|..++..+-..
T Consensus 167 l~~fg~~~~~~k~~l-~~i~~~l~k~l-~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFL-PELLKHVPQLA-GHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHTTTTCCHHHHH-HHHGGGHHHHH-TCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCcCCchhHH-HHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHH
Confidence 5321 1 112122 23566678888 788999999999999888653
No 159
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.11 E-value=0.16 Score=50.09 Aligned_cols=231 Identities=16% Similarity=0.157 Sum_probs=150.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHh-hCCHHHHHH-------hhcCCC-----HHHHHHHHHHhhc
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVE-VGCIPSLLK-------LLSSKD-----SSTQENAIAALLN 447 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~ip~Lv~-------lL~s~~-----~~~~~~A~~aL~n 447 (685)
+..++..|. +++.|..|+.+|..--...++--..+-. .|.+..|++ .|+.+. ..-..+|+..|.-
T Consensus 5 i~qli~~L~--~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQc 82 (268)
T 2fv2_A 5 IYQWINELS--SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQC 82 (268)
T ss_dssp HHHHHHHTS--STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHH
Confidence 445555554 4455777765554422211222222223 377777754 232211 2344678888888
Q ss_pred cccCcchhHHHHhcCcHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCch--hHHHHhhcCCCcHHHHHHHhccCCHHH
Q 039015 448 LSKHCKSKSMVVESGGLDFIVDMVKKGL----KVEARQHAAATLFYIASIE--EYRKLIGENPEAIPALVDMVRDGTDRS 521 (685)
Q Consensus 448 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 521 (685)
++.|++.|..+.++...--|-.+|+... -.-.|..+.+++..|...+ +.-..+.. .+.||..++.++.|+.-.
T Consensus 83 vAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~-tEiiplCLrime~GselS 161 (268)
T 2fv2_A 83 VASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLT-TEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH-TTHHHHHHHHHHHSCHHH
T ss_pred HHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHh-hhHHHHHHHHHhhccHHH
Confidence 9999999999999988888888887551 1355888999999998655 44444455 789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHh--------cCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCC--h-
Q 039015 522 KKNALVAIFGLLMHSGNHWRFLA--------AGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGA--L- 590 (685)
Q Consensus 522 ~~~A~~aL~nLs~~~~n~~~iv~--------~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~--v- 590 (685)
|..|.-.+..+-.++..-..+.. ..+...++.-+..+++..+....+.+-..|+.++.++.++.+.=- +
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 99999999888766654333322 113333444444567889999999999999999999999854211 1
Q ss_pred -HHHHHHhhcCCChhHHHHHHHHHHHH
Q 039015 591 -DMIMKILDSCTSRAGKEYCVSLLLAL 616 (685)
Q Consensus 591 -~~Lv~lL~~~~s~~~~e~a~~~L~~L 616 (685)
.....+++. ++..+..-...+.++
T Consensus 242 d~tf~~~l~~--D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFAQVLKD--DTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTHHHHTS--CHHHHHHHHHHHHHS
T ss_pred ChHHHHHHhc--CHHHHHHHHHHHHhc
Confidence 111123332 566666666655554
No 160
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.77 E-value=0.049 Score=59.41 Aligned_cols=245 Identities=12% Similarity=0.084 Sum_probs=153.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc--hhhHHHhhCCHHHHHHhh--cC-----CC---HHHHHHHHHHhhc
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF--NRSCLVEVGCIPSLLKLL--SS-----KD---SSTQENAIAALLN 447 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~--~r~~i~~~G~ip~Lv~lL--~s-----~~---~~~~~~A~~aL~n 447 (685)
..+.|+..|-+...+.|-.|+-.||.+.+.... .|..-......-.|+.+| +. +| ..++|.|+.+|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 467788888889999999999999998875431 111000112222233222 21 22 4789999888888
Q ss_pred cccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHH
Q 039015 448 LSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALV 527 (685)
Q Consensus 448 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~ 527 (685)
+ .+-+.. ..++..++..+..+ .++++.-+.-.|.++ .+ .+..-.++++.++..|.+.+++++..|+.
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~D---LL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSG-DWQVQFSGLIALGYL---KE---FVEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT---GG---GCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCC-CeeehhhhHHHHHHH---HH---HHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 7 554333 44556666555666 899999999999999 22 21112568889999999999999999999
Q ss_pred HHHHhcCCCCcHHHHHhcCChHHHHHHhcc-CCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHH
Q 039015 528 AIFGLLMHSGNHWRFLAAGAVPLLLNLLTS-SDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGK 606 (685)
Q Consensus 528 aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~ 606 (685)
+|..++ .++....+ +..+-+.|.+ ++-.......+.+|+.|+..+.. +-....-||.|..++++. -..++
T Consensus 322 tLiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt-ITSVR 392 (800)
T 3oc3_A 322 LLCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP-VPEVR 392 (800)
T ss_dssp HHTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS-SHHHH
T ss_pred Hhhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC-cHHHH
Confidence 999998 22222222 2334444432 11123345566777777766531 111122388888899987 89999
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 039015 607 EYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIR 658 (685)
Q Consensus 607 e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~ 658 (685)
...+.+|..+. . .. .+.- ....++-+.++.+.+.+..+-+
T Consensus 393 ~AVL~TL~tfL--~-~~---~LRL------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLS--E-ES---IDFL------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCC--C-HH---HHHH------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--h-hh---HHHH------HHHHHHhCCcHHHHHHHHHHHH
Confidence 99999987776 1 22 2211 3455666777777666555553
No 161
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.78 E-value=1 Score=53.82 Aligned_cols=259 Identities=13% Similarity=0.095 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc------CCCHHHHHHHHHHhhccccCcchhHHHHhc-----C
Q 039015 394 EEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS------SKDSSTQENAIAALLNLSKHCKSKSMVVES-----G 462 (685)
Q Consensus 394 ~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~------s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~-----g 462 (685)
..|..|...|..++.... ..+.. -.++.+...|. +.+...++.|+.++..++.....+..-+.. .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 456778888888886431 22211 12334444454 456678899999998887542211100000 1
Q ss_pred cHHH----HHHHhcCC--CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015 463 GLDF----IVDMVKKG--LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS 536 (685)
Q Consensus 463 ~i~~----Lv~lL~~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 536 (685)
..+. ++..|... ..+-+|..|+++|..++..- ....+ ..+++.++..|.+.+..++..|+.||.+++...
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l---~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQL---IELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 2222 23334433 26888999999999987642 12223 237888999888888999999999999998742
Q ss_pred C---------cHHHHHh--cCChHHHHHHhccCC----ChhHHHHHHHHHHHHhcCh-hcHHHHHhcCChHHHHHHhh--
Q 039015 537 G---------NHWRFLA--AGAVPLLLNLLTSSD----SEELITDSLAVLATLAEKL-DGTIAILHHGALDMIMKILD-- 598 (685)
Q Consensus 537 ~---------n~~~iv~--~G~v~~Lv~lL~~~~----~~~~~~~al~~L~~La~~~-~~~~~i~~~g~v~~Lv~lL~-- 598 (685)
+ .+..+.. ...++.|+.++.... .....+.++.+|..++..- +.-.-... ..++.|+.++.
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIM 606 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHH
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHH
Confidence 2 2222221 224455556664321 0001234445554443310 00000000 01244444332
Q ss_pred --cCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 039015 599 --SCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEF 663 (685)
Q Consensus 599 --~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 663 (685)
+..++.....++.+|..++...++.....+. ..++|.+..++..........+-.++..+-+.
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 2335566667888888887764333333333 24578888888776555555555555555443
No 162
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.74 E-value=0.2 Score=49.47 Aligned_cols=148 Identities=11% Similarity=0.055 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCC-----HHHHHHHHHHhhccccCcch--hHHHHhcCcHHHH
Q 039015 395 EKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKD-----SSTQENAIAALLNLSKHCKS--KSMVVESGGLDFI 467 (685)
Q Consensus 395 ~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~-----~~~~~~A~~aL~nLs~~~~~--k~~i~~~g~i~~L 467 (685)
....|+..++-+|. +++.|..+.++...-.|-.+|...+ .-++..++.+++.|.+.++. -..+.+.+.+|..
T Consensus 72 RVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 72 RVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 44678888888996 8899999999998777888887643 35778888888998876544 3344478899999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCc-------HHHHHH-HhccCCHHHHHHHHHHHHHhcCCCCcH
Q 039015 468 VDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEA-------IPALVD-MVRDGTDRSKKNALVAIFGLLMHSGNH 539 (685)
Q Consensus 468 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~-------i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~ 539 (685)
++.+..| +.-.+..|+-++..+-.++..-.-+.....= +..+|. +.++++++..+..+.+-..|+.++..+
T Consensus 151 Lrime~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar 229 (268)
T 2fv2_A 151 LRIMESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAR 229 (268)
T ss_dssp HHHHHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHH
Confidence 9999999 9999999999999988877766655543332 222333 235678899999999999999888877
Q ss_pred HHHHh
Q 039015 540 WRFLA 544 (685)
Q Consensus 540 ~~iv~ 544 (685)
..+..
T Consensus 230 ~aL~~ 234 (268)
T 2fv2_A 230 EALRQ 234 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 163
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.70 E-value=0.24 Score=50.77 Aligned_cols=170 Identities=9% Similarity=0.024 Sum_probs=105.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHH----HhhcC-CCHHHHHHHHHHhhccccCcchh
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLL----KLLSS-KDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv----~lL~s-~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
+..+.+.+ +=..+.+.-++..+|.++. ++.....+.+.+.-..++ ..+.+ ..+..+-.++++++|+..++.++
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 45555554 3344567778888888775 555555555443333333 33332 35667899999999999999998
Q ss_pred HHHHh--cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc-CCHHHHHHHHHHHHHh
Q 039015 456 SMVVE--SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRD-GTDRSKKNALVAIFGL 532 (685)
Q Consensus 456 ~~i~~--~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nL 532 (685)
..+.. ..+++.+...+... +..++..++.+++|++..............++..+..++.. .+.+....++.||.+|
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 88874 23455555555555 88999999999999986431100010101134444445543 4678888999999999
Q ss_pred cCCCCcHHHHHhcCChHHHHH
Q 039015 533 LMHSGNHWRFLAAGAVPLLLN 553 (685)
Q Consensus 533 s~~~~n~~~iv~~G~v~~Lv~ 553 (685)
...++....+.+.=.+...++
T Consensus 262 ~~~~~~~~~lak~l~~~~~v~ 282 (304)
T 3ebb_A 262 ISDDSNAVQLAKSLGVDSQIK 282 (304)
T ss_dssp HTTCHHHHHHHHHTTHHHHGG
T ss_pred HhCChhHHHHHHHcCHHHHHH
Confidence 976555555554433333333
No 164
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.57 E-value=0.014 Score=49.59 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=28.9
Q ss_pred CCccCcCccc-cCCCcee--ccCcccccHHHHHHHHH
Q 039015 279 DDFTCPISLE-IMKDPVT--LSTGHTYDRASILKWFR 312 (685)
Q Consensus 279 ~~~~CpIc~~-~m~dPv~--~~cghtfcr~ci~~~~~ 312 (685)
++..|+||.+ +..+||. +.|||+||+.|+..+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4688999996 4789998 89999999999998543
No 165
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.53 E-value=0.94 Score=46.37 Aligned_cols=185 Identities=13% Similarity=0.051 Sum_probs=107.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHH----HHhcCCCCHHHHHHHHHHHHHhcCchhHHH
Q 039015 423 IPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIV----DMVKKGLKVEARQHAAATLFYIASIEEYRK 498 (685)
Q Consensus 423 ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv----~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 498 (685)
+..+.+++ +...+.+--++.+|.-+..++.....+.+.+.-..++ ..+.....+..+..++.++.||-.++..+.
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 44555554 3334444455555555555554444444322222222 333322256779999999999999998888
Q ss_pred HhhcCC-CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--C-cHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH
Q 039015 499 LIGENP-EAIPALVDMVRDGTDRSKKNALVAIFGLLMHS--G-NHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATL 574 (685)
Q Consensus 499 ~i~~~~-g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~--~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L 574 (685)
.+.... .+++.+...+...+...+..++++++|++... . .... ...+...+..++....+.+..-.++.+|.+|
T Consensus 184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 776521 24445555555567788889999999998532 1 1111 1113444556664456788889999999999
Q ss_pred hcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHH
Q 039015 575 AEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCV 610 (685)
Q Consensus 575 a~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~ 610 (685)
...+.....+.+.=++...+. +...+..+++.+.|-
T Consensus 262 ~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~ 298 (304)
T 3ebb_A 262 ISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCR 298 (304)
T ss_dssp HTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHH
T ss_pred HhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHH
Confidence 876554555555445555555 444422444444443
No 166
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.52 E-value=0.48 Score=47.47 Aligned_cols=179 Identities=11% Similarity=0.131 Sum_probs=119.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhC-CHHHHHHhhcCCCHHHHHHHHHHhhccccC---cchhHHH
Q 039015 383 FISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVG-CIPSLLKLLSSKDSSTQENAIAALLNLSKH---CKSKSMV 458 (685)
Q Consensus 383 ~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G-~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~---~~~k~~i 458 (685)
.+...|-+.+...+.+|+..|......++ ...+...+ .++.+.--+.+++..+...++.+|..+... ...+..-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 33455556788889999999888765332 23332222 233333233467888999998888776321 1111111
Q ss_pred Hh-cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 039015 459 VE-SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG 537 (685)
Q Consensus 459 ~~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 537 (685)
.+ .-.+|.|+.-+..+ ...+|..+-.++..|... ..- ...++.+++-+++.+.+.+..++..|..+-...+
T Consensus 128 ~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v------~~~-~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDV------VGP-LKMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH------HCH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH------CCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 12 33689999988877 788888888877666432 122 3467888888899999999999888887753333
Q ss_pred cHHHHHhcCCh---HHHHHHhccCCChhHHHHHHHHHHHHhc
Q 039015 538 NHWRFLAAGAV---PLLLNLLTSSDSEELITDSLAVLATLAE 576 (685)
Q Consensus 538 n~~~iv~~G~v---~~Lv~lL~~~~~~~~~~~al~~L~~La~ 576 (685)
.. ..+++ +.+..++ ++.+..+++.|+.++..+-.
T Consensus 200 ~~----~~~~l~~~~~ia~ll-~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 200 IS----PLKSLSVEKTVAPFV-GDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp SG----GGGGGCHHHHHGGGG-GCSSHHHHHHHHHHHHHHHH
T ss_pred CC----ccccccchHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence 22 24478 9999999 78899999999999886644
No 167
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.033 Score=57.98 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=53.5
Q ss_pred CCccCcCccccCCCceec-cCccc--ccHHHHHHHHH-cCCCCCCCCCccccCCCCcccHHHHhhHHH
Q 039015 279 DDFTCPISLEIMKDPVTL-STGHT--YDRASILKWFR-AGNSTCPKTGERLQSKELLVNLVLKRIIQD 342 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~-~cght--fcr~ci~~~~~-~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~ 342 (685)
-.+.||++...|..|+.- .|.|. |+...+..+.. .+...||.|.+.+...++..+..+..++..
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 349999999999999976 79997 88877666654 357799999999999999999988877654
No 168
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.33 E-value=4.6 Score=41.49 Aligned_cols=239 Identities=16% Similarity=0.142 Sum_probs=167.8
Q ss_pred HHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcch-hH----HHHh-cCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039015 416 CLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKS-KS----MVVE-SGGLDFIVDMVKKGLKVEARQHAAATLFY 489 (685)
Q Consensus 416 ~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~----~i~~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~ 489 (685)
.+...+.+..|+..|..=+-+.+..+..+..++-....+ +- .+.+ ...+..|+.-- .+++.-..+-..|..
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY---e~~diAl~~G~mLRe 149 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY---ESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG---GSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh---ccchhHhHHHHHHHH
Confidence 456678999999999998999999999999998766533 22 2222 22233333222 255777788888999
Q ss_pred hcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhcC---ChHHHHHHhccCCChhHHH
Q 039015 490 IASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH-SGNHWRFLAAG---AVPLLLNLLTSSDSEELIT 565 (685)
Q Consensus 490 Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G---~v~~Lv~lL~~~~~~~~~~ 565 (685)
...++.....|-. .+.+-.+.+.++.++=++-.+|..++.-|-.. .......+... .+...-+|| .+++=-.+.
T Consensus 150 cir~e~la~~iL~-~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll-~S~NYVTkR 227 (341)
T 1upk_A 150 CIRHEPLAKIILW-SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL-HSENYVTKR 227 (341)
T ss_dssp HHTSHHHHHHHHH-SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT-TCSSHHHHH
T ss_pred HHHhHHHHHHHhc-cHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh-cCCcchhHH
Confidence 9888888887777 77888999999999989999999998887643 33444444433 355566777 566667888
Q ss_pred HHHHHHHHHhcChhcHHHH---HhcCC-hHHHHHHhhcCCChhHHHHHHHHHHHHhccC--cHHHHHHHHhcCCcHHHHH
Q 039015 566 DSLAVLATLAEKLDGTIAI---LHHGA-LDMIMKILDSCTSRAGKEYCVSLLLALCING--GANVVALLVKSPSLMGSLY 639 (685)
Q Consensus 566 ~al~~L~~La~~~~~~~~i---~~~g~-v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~--~~~~~~~l~~~~g~i~~L~ 639 (685)
.++.+|..|-.+..+...+ +..+. +..++.+|++. +..++-.|.-+.--...+. ++.+..++.+ . -..|+
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~-N--r~kLl 303 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLK-N--QAKLI 303 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH-T--HHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHH-H--HHHHH
Confidence 9999999998887776654 33333 88889999998 9999999998887766543 4667777776 3 45666
Q ss_pred HHHhcC-C-----hHHHHHHHHHHHHHHHh
Q 039015 640 SLLSQG-S-----SRASKKASALIRILHEF 663 (685)
Q Consensus 640 ~Ll~~g-~-----~~~k~~A~~lL~~l~~~ 663 (685)
.++.+- + +.-...=+-+++.+...
T Consensus 304 ~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 304 EFLSKFQNDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp HHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCCCcchhhHHHHHHHHHHHHHhC
Confidence 666542 1 22223333466666554
No 169
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.25 E-value=1.1 Score=46.01 Aligned_cols=223 Identities=16% Similarity=0.125 Sum_probs=161.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhh--CCHHHHHH-hhcC-CCHHHHHHHHHHhhccccCcchh
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEV--GCIPSLLK-LLSS-KDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~--G~ip~Lv~-lL~s-~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
.+..|+..|..=+-+.|..++....++.+.....|...++. .- |-++. ++.. +++++...+=.+|.....++.-.
T Consensus 79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRecir~e~la 157 (341)
T 1upk_A 79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIRHEPLA 157 (341)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHH
Confidence 46677788877888999998888888887666555443321 12 33333 3322 57788888888999999999888
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-chhHHHHh-hcC-CCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIAS-IEEYRKLI-GEN-PEAIPALVDMVRDGTDRSKKNALVAIFGL 532 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i-~~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 532 (685)
..|...+.+..+......+ +-++...|.+++..|-. +....... ..+ ...+...-.||.+++.-++..++..|..|
T Consensus 158 ~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgel 236 (341)
T 1upk_A 158 KIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGEL 236 (341)
T ss_dssp HHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 8888888899999999988 99999999999987743 33322222 221 13566777899999999999999999999
Q ss_pred cCCCCcHHHHHhc----CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHH
Q 039015 533 LMHSGNHWRFLAA----GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEY 608 (685)
Q Consensus 533 s~~~~n~~~iv~~----G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~ 608 (685)
-.+..|...|... .-+..++.+| .+.+..++-+|..++-....+|.- -+.++.+|... ++.
T Consensus 237 Lldr~N~~vM~~Yis~~~nLkl~M~LL-~d~sk~Iq~EAFhVFKvFVANP~K---------~~~I~~IL~~N-----r~k 301 (341)
T 1upk_A 237 LLDRHNFTIMTKYISKPENLKLMMNLL-RDKSRNIQFEAFHVFKVFVANPNK---------TQPILDILLKN-----QAK 301 (341)
T ss_dssp HHSGGGHHHHHHHTTCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHCSSC---------CHHHHHHHHHT-----HHH
T ss_pred HhCchHHHHHHHHhCCHHHHHHHHHHh-cCchhchhhhhhhheeeeeeCCCC---------ChHHHHHHHHH-----HHH
Confidence 9999988777553 3467788888 678899999999998877655432 34445544432 566
Q ss_pred HHHHHHHHhcc
Q 039015 609 CVSLLLALCIN 619 (685)
Q Consensus 609 a~~~L~~L~~~ 619 (685)
-+..|..+-.+
T Consensus 302 Ll~fl~~f~~d 312 (341)
T 1upk_A 302 LIEFLSKFQND 312 (341)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHhCCCC
Confidence 66666665543
No 170
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.16 Score=51.17 Aligned_cols=187 Identities=16% Similarity=0.118 Sum_probs=119.0
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCchh---HHHHhh-cCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----c
Q 039015 467 IVDMVKKGLKVEARQHAAATLFYIASIEE---YRKLIG-ENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSG----N 538 (685)
Q Consensus 467 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~---~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~----n 538 (685)
+-+-|.+. ++..|..|...|..+..... ...... .-....+.+-..+.+.+..+...|+.+|..++..-. .
T Consensus 14 l~e~l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 44567777 89999999988877643221 111111 112245666678888889999999999888875322 1
Q ss_pred HH--HHHhcCChHHHHHH-hccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015 539 HW--RFLAAGAVPLLLNL-LTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLA 615 (685)
Q Consensus 539 ~~--~iv~~G~v~~Lv~l-L~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~ 615 (685)
+. ...-..+++.|+.- | .+....++..+..++..++........+ +..++..+.+. +|.++..++..|..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l-~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l~~K-npkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGL-TSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFFEKK-LPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 22 22334567777764 5 5677888888888887776532221111 23445566676 99999999999988
Q ss_pred HhccCcHH---HHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015 616 LCINGGAN---VVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 616 L~~~~~~~---~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 664 (685)
+...-+.. ....+ ..+++.+..++.+.++.+|..|..++-.+.++-
T Consensus 166 ~l~~fg~~~~~~k~~l---~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFL---PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHTTTTCCHHHHH---HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhCCCcCCchhHH---HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 76431111 11111 123457788899999999999999998887653
No 171
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.85 E-value=0.042 Score=54.40 Aligned_cols=49 Identities=14% Similarity=0.356 Sum_probs=39.9
Q ss_pred CccCcCccccCCCceec-cCcccccHHHHHHHHHc-CCCCCCCCCccccCC
Q 039015 280 DFTCPISLEIMKDPVTL-STGHTYDRASILKWFRA-GNSTCPKTGERLQSK 328 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~-~cghtfcr~ci~~~~~~-~~~~CP~c~~~l~~~ 328 (685)
-..|.||.++...-+.- .|++.|...|+.+|+.. +...||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 46799999998866544 39999999999999975 356999999876544
No 172
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.70 E-value=0.062 Score=55.82 Aligned_cols=65 Identities=18% Similarity=0.357 Sum_probs=54.5
Q ss_pred CCCccCcCccccCCCceec-cCccc--ccHHHHHHHHH-cCCCCCCCCCccccCCCCcccHHHHhhHHH
Q 039015 278 PDDFTCPISLEIMKDPVTL-STGHT--YDRASILKWFR-AGNSTCPKTGERLQSKELLVNLVLKRIIQD 342 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~-~cght--fcr~ci~~~~~-~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~ 342 (685)
.-.+.||++...|..|+.- .|.|. |+...+..+.. .+...||.|++.+...++..+..+..++..
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 3458999999999999976 79998 88877766665 357799999999998899999988887754
No 173
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=93.70 E-value=4.6 Score=37.86 Aligned_cols=215 Identities=14% Similarity=0.149 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccCcchh
Q 039015 377 MKLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS-SKDSSTQENAIAALLNLSKHCKSK 455 (685)
Q Consensus 377 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k 455 (685)
.+..+..++..|...-..+|.+|+..|..+++.-++....+ +..|+.+++ +........-..+++.++.-...
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe- 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE- 103 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH-
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH-
Confidence 34567888888887778899999999999998666554444 335555554 34445544555666666532211
Q ss_pred HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 039015 456 SMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMH 535 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 535 (685)
++ .+.+|.|..-..-| ++..+.+...+|-.++..+ -..++ +++.-+..++.+.+..-+-.|+..|..|
T Consensus 104 --~v-~~vVp~lfanyrig-d~kikIn~~yaLeeIaran--P~l~~---~v~rdi~smltskd~~Dkl~aLnFi~al--- 171 (253)
T 2db0_A 104 --LV-KSMIPVLFANYRIG-DEKTKINVSYALEEIAKAN--PMLMA---SIVRDFMSMLSSKNREDKLTALNFIEAM--- 171 (253)
T ss_dssp --HH-HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHC--HHHHH---HHHHHHHHHTSCSSHHHHHHHHHHHHTC---
T ss_pred --HH-HhhHHHHHHHHhcC-CccceecHHHHHHHHHHhC--hHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHH---
Confidence 11 23456666666778 9999999999999887633 22232 3567788889888866666666666544
Q ss_pred CCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHH
Q 039015 536 SGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLL 614 (685)
Q Consensus 536 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~ 614 (685)
.+|..+-+. -.+|.|..+| .+.+.-++..|+.+|.++|.. +.-|..|. ..++-+.+. |..++..-...|.
T Consensus 172 Gen~~~yv~-PfLprL~aLL-~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~-S~lv~~~V~egL~ 242 (253)
T 2db0_A 172 GENSFKYVN-PFLPRIINLL-HDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT-SSLVNKTVKEGIS 242 (253)
T ss_dssp CTTTHHHHG-GGHHHHHGGG-GCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS-CHHHHHHHHHHHH
T ss_pred hccCccccC-cchHHHHHHH-cCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc-HHHHHHHHHHHHH
Confidence 455544432 2578888899 788899999999999999985 44333332 234445555 7777776666666
Q ss_pred HHhc
Q 039015 615 ALCI 618 (685)
Q Consensus 615 ~L~~ 618 (685)
.|..
T Consensus 243 rl~l 246 (253)
T 2db0_A 243 RLLL 246 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 174
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.50 E-value=3.6 Score=43.49 Aligned_cols=177 Identities=17% Similarity=0.159 Sum_probs=114.2
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhhcCCchh-hHHHhhCCHHHHHHhhcC-----------CCHHHHHHHHHHhhcccc
Q 039015 384 ISDRLLEGT-SEEKNKVAYEVRLLTKSSIFNR-SCLVEVGCIPSLLKLLSS-----------KDSSTQENAIAALLNLSK 450 (685)
Q Consensus 384 Lv~~L~s~~-~~~~~~a~~~L~~La~~~~~~r-~~i~~~G~ip~Lv~lL~s-----------~~~~~~~~A~~aL~nLs~ 450 (685)
.+..|.++. .+...+.+..|+.--..++... ..|. .+|+..|+.+|.. .+...+..++.+|..+-.
T Consensus 71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN 149 (383)
T 3eg5_B 71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 149 (383)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc
Confidence 355555543 2222345566665444443332 2344 6788999998852 245788888999988888
Q ss_pred CcchhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh--H-HHH----------hhcCCCcHHHHHHHhcc
Q 039015 451 HCKSKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE--Y-RKL----------IGENPEAIPALVDMVRD 516 (685)
Q Consensus 451 ~~~~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~----------i~~~~g~i~~Lv~lL~~ 516 (685)
+..+...++ ...++..|+..|.+. ++.++..|+.+|..+|..++ + ... .++ ..-+..++..|++
T Consensus 150 ~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e-~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 150 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLKS 227 (383)
T ss_dssp SHHHHHHHHTCSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHTTST
T ss_pred chhhHHHHHcChHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCC-CCcHHHHHHHHHc
Confidence 888877777 468899999999888 89999999999988876543 1 221 233 5668889999987
Q ss_pred -CCHHHHHHHHHHHHHhcCCCC-------cHHHHHhcCChHHHHHHhccCCChhHH
Q 039015 517 -GTDRSKKNALVAIFGLLMHSG-------NHWRFLAAGAVPLLLNLLTSSDSEELI 564 (685)
Q Consensus 517 -~~~~~~~~A~~aL~nLs~~~~-------n~~~iv~~G~v~~Lv~lL~~~~~~~~~ 564 (685)
.+.+.+..++..|-.+....+ -|..+...|..+.+-. |....++.+.
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L~ 282 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIENEDMK 282 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHHHH
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCChhHH
Confidence 456666655555555555444 2444566776665555 5444454443
No 175
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.36 E-value=2.4 Score=41.52 Aligned_cols=176 Identities=17% Similarity=0.180 Sum_probs=109.0
Q ss_pred HHHhcCCC-HHHHHHHHHHHHHHhhcCCchhh-HHHhhCCHHHHHHhhcC----C-------CHHHHHHHHHHhhccccC
Q 039015 385 SDRLLEGT-SEEKNKVAYEVRLLTKSSIFNRS-CLVEVGCIPSLLKLLSS----K-------DSSTQENAIAALLNLSKH 451 (685)
Q Consensus 385 v~~L~s~~-~~~~~~a~~~L~~La~~~~~~r~-~i~~~G~ip~Lv~lL~s----~-------~~~~~~~A~~aL~nLs~~ 451 (685)
++.|+++. .+.-.+.+..|+..-+.++..+. .| ..||+..|+.+|.. . +...+..++.+|..+..+
T Consensus 6 i~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~ 84 (233)
T 2f31_A 6 IQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN 84 (233)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC
Confidence 45554442 22223344555544443433222 23 46888888887754 1 456778888899888878
Q ss_pred cchhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh--H-HHHh----------hcCCCcHHHHHHHhcc-
Q 039015 452 CKSKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE--Y-RKLI----------GENPEAIPALVDMVRD- 516 (685)
Q Consensus 452 ~~~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~i----------~~~~g~i~~Lv~lL~~- 516 (685)
..+...++ ..+++..|+..|.+. +..++..++.+|..+|..++ . ...+ ++ ..-+..+++.+++
T Consensus 85 ~~G~~~vl~~~~~i~~l~~~L~s~-~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e-~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 85 KFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLKSG 162 (233)
T ss_dssp HHHHHHHHTSSSHHHHHHTTCCTT-SHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHT-SCTTHHHHHTTSTT
T ss_pred hHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCC-cchHHHHHHHHhcC
Confidence 88877777 467899999999887 89999999988887776543 2 2222 23 5567888988875
Q ss_pred CCHHHHHHHHHHHHHhcCCCCc-------HHHHHhcCChHHHHHHhccCCChhHH
Q 039015 517 GTDRSKKNALVAIFGLLMHSGN-------HWRFLAAGAVPLLLNLLTSSDSEELI 564 (685)
Q Consensus 517 ~~~~~~~~A~~aL~nLs~~~~n-------~~~iv~~G~v~~Lv~lL~~~~~~~~~ 564 (685)
++.+.+..++..+-.+....++ |..+...|..+.+ .-|....++.+.
T Consensus 163 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il-~~l~~~~~~~L~ 216 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREIENEDMK 216 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHHHCCCHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhccCCHHHH
Confidence 4456665555555555555442 4445666655554 444344454443
No 176
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.94 E-value=4.8 Score=39.25 Aligned_cols=145 Identities=19% Similarity=0.172 Sum_probs=98.4
Q ss_pred hcCcHHHHHHHhcC----CC------CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHH
Q 039015 460 ESGGLDFIVDMVKK----GL------KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI 529 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~----~~------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL 529 (685)
..||+..|+.+|.. +. +.+....++..|..+..+......+...++++..|+..|.+.++.++..++..|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 46788888888752 21 235567788888888877766666666688999999999888899999999999
Q ss_pred HHhcCCCC--c-HHHHHhc----------CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhc---HHHH---HhcCCh
Q 039015 530 FGLLMHSG--N-HWRFLAA----------GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG---TIAI---LHHGAL 590 (685)
Q Consensus 530 ~nLs~~~~--n-~~~iv~~----------G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~---~~~i---~~~g~v 590 (685)
..+|..++ + ...+.++ .-...+++.|..+.+.+....++..+-.+...++. |..+ ...-|+
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 200 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 200 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 99997765 5 5554332 35667888885555667777777777666665433 2222 223456
Q ss_pred HHHHHHhhcCCChh
Q 039015 591 DMIMKILDSCTSRA 604 (685)
Q Consensus 591 ~~Lv~lL~~~~s~~ 604 (685)
..+++-++...++.
T Consensus 201 ~~il~~l~~~~~~~ 214 (233)
T 2f31_A 201 HQVLQELREIENED 214 (233)
T ss_dssp HHHHHHHHHCCCHH
T ss_pred HHHHHHHhccCCHH
Confidence 66666555432443
No 177
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=90.72 E-value=0.66 Score=45.93 Aligned_cols=171 Identities=13% Similarity=0.115 Sum_probs=87.9
Q ss_pred CchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 039015 411 IFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYI 490 (685)
Q Consensus 411 ~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L 490 (685)
+..|......=....|..++.+++..++..++..| . .+.|..+++.. +.++|..++.. |
T Consensus 64 ~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~~L~~ll~D~-d~~VR~~aA~~---l 122 (244)
T 1lrv_A 64 WERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRL---P--------------REQLSALMFDE-DREVRITVADR---L 122 (244)
T ss_dssp HHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGGGGGTTTCS-CHHHHHHHHHH---S
T ss_pred HHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHC---C--------------HHHHHHHHcCC-CHHHHHHHHHh---C
Confidence 44555555543345566677788888888888642 1 13455566666 77888777663 2
Q ss_pred cCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCCChhHHHHHHHH
Q 039015 491 ASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAV 570 (685)
Q Consensus 491 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~ 570 (685)
. .+.|..++++++..++..++.. + ..+.+..++ .+++..++..++..
T Consensus 123 ~---------------~~~L~~L~~D~d~~VR~~aA~~---l--------------~~~~l~~l~-~D~d~~VR~~aa~~ 169 (244)
T 1lrv_A 123 P---------------LEQLEQMAADRDYLVRAYVVQR---I--------------PPGRLFRFM-RDEDRQVRKLVAKR 169 (244)
T ss_dssp C---------------TGGGGGGTTCSSHHHHHHHHHH---S--------------CGGGGGGTT-TCSCHHHHHHHHHH
T ss_pred C---------------HHHHHHHHcCCCHHHHHHHHHh---c--------------CHHHHHHHH-cCCCHHHHHHHHHc
Confidence 1 1234455666667777766652 1 012222333 45555555555442
Q ss_pred HHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHH-----HHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC
Q 039015 571 LATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSL-----LLALCINGGANVVALLVKSPSLMGSLYSLLSQG 645 (685)
Q Consensus 571 L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~-----L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g 645 (685)
+ +.+.+..++++. ++.++..++.. |..+..+....++..+....| .+.|..| .+.
T Consensus 170 ---l--------------~~~ll~~ll~D~-d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l~-~~~L~~L-~D~ 229 (244)
T 1lrv_A 170 ---L--------------PEESLGLMTQDP-EPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS-LEALREL-DEP 229 (244)
T ss_dssp ---S--------------CGGGGGGSTTCS-SHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHSC-HHHHHHC-CCC
T ss_pred ---C--------------CHHHHHHHHcCC-CHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcCC-HHHHHHc-cCC
Confidence 1 012222233433 44444444422 222223333334444433233 4566666 777
Q ss_pred ChHHHHHHHH
Q 039015 646 SSRASKKASA 655 (685)
Q Consensus 646 ~~~~k~~A~~ 655 (685)
+..++..|..
T Consensus 230 ~~~VR~aa~~ 239 (244)
T 1lrv_A 230 DPEVRLAIAG 239 (244)
T ss_dssp CHHHHHHHHC
T ss_pred CHHHHHHHHH
Confidence 8888777654
No 178
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=90.63 E-value=5.6 Score=47.30 Aligned_cols=220 Identities=10% Similarity=0.134 Sum_probs=122.3
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCchhhHHH---h-hCCHHH----HHHhhcCC---CHHHHHHHHHHhhccccCcchhHHH
Q 039015 390 EGTSEEKNKVAYEVRLLTKSSIFNRSCLV---E-VGCIPS----LLKLLSSK---DSSTQENAIAALLNLSKHCKSKSMV 458 (685)
Q Consensus 390 s~~~~~~~~a~~~L~~La~~~~~~r~~i~---~-~G~ip~----Lv~lL~s~---~~~~~~~A~~aL~nLs~~~~~k~~i 458 (685)
+.+...+..|+.++..++.........+. . ....+. ++..|.++ .+-++..|+++|..++..- .+..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~- 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ- 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-
Confidence 45677888999999999853211110000 0 022222 23334555 7899999999999988653 1221
Q ss_pred HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh---------HHHHhhc-CCCcHHHHHHHhccCC--H-H--HHH
Q 039015 459 VESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE---------YRKLIGE-NPEAIPALVDMVRDGT--D-R--SKK 523 (685)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~---------~~~~i~~-~~g~i~~Lv~lL~~~~--~-~--~~~ 523 (685)
-...++.++..|... +..++..|+.+|.+++...+ .+..+.. -...++.|+.++.... + . ...
T Consensus 494 -l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 494 -LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp -HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred -HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 244678888888877 89999999999999887421 2333322 0135556666666641 1 1 223
Q ss_pred HHHHHHHHhcC--CCCcHHHHHhcCChHHHHHHhc----cCCChhHHHHHHHHHHHHhcC--hhcHHHHHhcCChHHHHH
Q 039015 524 NALVAIFGLLM--HSGNHWRFLAAGAVPLLLNLLT----SSDSEELITDSLAVLATLAEK--LDGTIAILHHGALDMIMK 595 (685)
Q Consensus 524 ~A~~aL~nLs~--~~~n~~~iv~~G~v~~Lv~lL~----~~~~~~~~~~al~~L~~La~~--~~~~~~i~~~g~v~~Lv~ 595 (685)
.+..+|..++. .++... ... ..++.|+..+. +..+......++.+|..++.. ++....+. ...+|.+..
T Consensus 572 ~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~ 648 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLT 648 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHH
Confidence 55566655532 122221 111 14455555553 233556666677777777654 33333332 223577777
Q ss_pred HhhcCCChhHHHHHHHHHHHHh
Q 039015 596 ILDSCTSRAGKEYCVSLLLALC 617 (685)
Q Consensus 596 lL~~~~s~~~~e~a~~~L~~L~ 617 (685)
+|... .....+.+..++..+.
T Consensus 649 iL~~~-~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 649 VFSED-IQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHTT-CTTTHHHHHHHHHHHH
T ss_pred HHHhh-hHhhHHHHHHHHHHHH
Confidence 77654 4455666666655554
No 179
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.54 E-value=1.4 Score=44.05 Aligned_cols=141 Identities=14% Similarity=0.074 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHHhcC---chhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHH
Q 039015 476 KVEARQHAAATLFYIAS---IEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLL 552 (685)
Q Consensus 476 ~~e~~~~Aa~~L~~Ls~---~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv 552 (685)
+..+...+..+|..+.. ..+++-.-.+..-.+|.|++-+.+..+.++..+-.+|..|+.- .--..+++.++
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~ 173 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLL 173 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHH
Confidence 66676677766666532 1111111111023689999998777788888777777666421 11223566677
Q ss_pred HHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCCh---HHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHH
Q 039015 553 NLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGAL---DMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALL 628 (685)
Q Consensus 553 ~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v---~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l 628 (685)
+-+ .+.+...++.++..+..+-... |.. ...++ +.+..++.+. +..+++.|+.++..+..+.|+.+...+
T Consensus 174 ~g~-ksKN~R~R~e~l~~l~~li~~~-G~~---~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 174 DAL-KSKNARQRSECLLVIEYYITNA-GIS---PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp HGG-GCSCHHHHHHHHHHHHHHHHHH-CSG---GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHH-ccCCHHHHHHHHHHHHHHHHhc-CCC---ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 777 5667889999999888885532 222 23468 8899999987 999999999999988887667666554
No 180
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=89.78 E-value=10 Score=40.87 Aligned_cols=123 Identities=16% Similarity=0.192 Sum_probs=91.4
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHH
Q 039015 389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIV 468 (685)
Q Consensus 389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv 468 (685)
..|+..++.-|+.-|...-+.-++....- |..+++|..+.|..+|..|+..|-.++.+ ++-.+ ....|+
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~ 106 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILT 106 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHH
Confidence 45788999999999999888777766544 66889999999999999999999999988 44333 467889
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 039015 469 DMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFG 531 (685)
Q Consensus 469 ~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 531 (685)
++|+.. +.......-.+|..|-..+. + +.+..|..-+..+++.++..++..|..
T Consensus 107 QlLqtd-d~~E~~~V~~sL~sllk~Dp-k-------~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 107 QLLQTD-DSAEFNLVNNALLSIFKMDA-K-------GTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHTTCC-CHHHHHHHHHHHHHHHHHCH-H-------HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhcc-chHHHHHHHHHHHHHHhcCh-H-------HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 999988 66666666666666544332 2 344556665666778888888877643
No 181
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.07 E-value=6.2 Score=41.66 Aligned_cols=179 Identities=17% Similarity=0.184 Sum_probs=111.2
Q ss_pred HHHHhcCCCHHH-HHHHHHHHHHHhhcCCchhh-HHHhhCCHHHHHHhhcC-----------CCHHHHHHHHHHhhcccc
Q 039015 384 ISDRLLEGTSEE-KNKVAYEVRLLTKSSIFNRS-CLVEVGCIPSLLKLLSS-----------KDSSTQENAIAALLNLSK 450 (685)
Q Consensus 384 Lv~~L~s~~~~~-~~~a~~~L~~La~~~~~~r~-~i~~~G~ip~Lv~lL~s-----------~~~~~~~~A~~aL~nLs~ 450 (685)
.++.|.++.... -.+.+..|+..-+.++..+. .| ..||+..|+.+|.. .+...+..++.+|..+..
T Consensus 9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN 87 (386)
T 2bnx_A 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 87 (386)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 355565543222 22344555554444433222 22 36788888887753 145678888889888888
Q ss_pred CcchhHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchh--H-HHH----------hhcCCCcHHHHHHHhcc
Q 039015 451 HCKSKSMVV-ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEE--Y-RKL----------IGENPEAIPALVDMVRD 516 (685)
Q Consensus 451 ~~~~k~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~----------i~~~~g~i~~Lv~lL~~ 516 (685)
+..+...++ ..+++..|+..|... ++.++..++.+|..+|..++ . ... .++ ..-+..||+.+.+
T Consensus 88 ~~~Gl~~vl~~~~~i~~l~~sL~s~-~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e-~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 88 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLKS 165 (386)
T ss_dssp SHHHHHHHHHSSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHHTST
T ss_pred CHHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCc-hhhHHHHHHHHHc
Confidence 887877666 568899999999877 88999999888877776543 2 222 223 5567889998874
Q ss_pred C-CHHHHHHHHHHHHHhcCCCCc-------HHHHHhcCChHHHHHHhccCCChhHHHH
Q 039015 517 G-TDRSKKNALVAIFGLLMHSGN-------HWRFLAAGAVPLLLNLLTSSDSEELITD 566 (685)
Q Consensus 517 ~-~~~~~~~A~~aL~nLs~~~~n-------~~~iv~~G~v~~Lv~lL~~~~~~~~~~~ 566 (685)
+ +.+.+..++..+-.|....++ |..+...|..+.| .-|....++.+...
T Consensus 166 ~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 166 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREIENEDMKVQ 222 (386)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTTCCCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhccCChhHHHH
Confidence 4 456665555555555555542 5556667765555 45544455554433
No 182
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.68 E-value=0.25 Score=49.04 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=40.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCc
Q 039015 384 ISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGG 463 (685)
Q Consensus 384 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~ 463 (685)
|...+...++.+|..++..| ..+.|..++.+++..++..++..| +
T Consensus 79 l~~L~~D~~~~VR~~aA~~L------------------~~~~L~~ll~D~d~~VR~~aA~~l---~-------------- 123 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRL------------------PREQLSALMFDEDREVRITVADRL---P-------------- 123 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS------------------CSGGGGGTTTCSCHHHHHHHHHHS---C--------------
T ss_pred HHHHccCcCHHHHHHHHHHC------------------CHHHHHHHHcCCCHHHHHHHHHhC---C--------------
Confidence 34444666777777666431 124677788888999998888743 1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHH
Q 039015 464 LDFIVDMVKKGLKVEARQHAAA 485 (685)
Q Consensus 464 i~~Lv~lL~~~~~~e~~~~Aa~ 485 (685)
.+.+..+++.. +.++|..++.
T Consensus 124 ~~~L~~L~~D~-d~~VR~~aA~ 144 (244)
T 1lrv_A 124 LEQLEQMAADR-DYLVRAYVVQ 144 (244)
T ss_dssp TGGGGGGTTCS-SHHHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHH
Confidence 11233344444 6777776665
No 183
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=87.92 E-value=12 Score=39.38 Aligned_cols=143 Identities=17% Similarity=0.172 Sum_probs=99.2
Q ss_pred HHHHhcCcHHHHHHHhcC----C------CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHH
Q 039015 456 SMVVESGGLDFIVDMVKK----G------LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNA 525 (685)
Q Consensus 456 ~~i~~~g~i~~Lv~lL~~----~------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A 525 (685)
..+. .+|+..|+.+|.. + .+......++..|..+.-+......+...+.+|..|+..|.+.++.+++.|
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a 182 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 182 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence 3444 7789999999851 1 123566778888888887776666666668999999999999899999999
Q ss_pred HHHHHHhcCCCC--c-HHHHHh----------cCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhc---HH----HHH
Q 039015 526 LVAIFGLLMHSG--N-HWRFLA----------AGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG---TI----AIL 585 (685)
Q Consensus 526 ~~aL~nLs~~~~--n-~~~iv~----------~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~---~~----~i~ 585 (685)
+..|..+|..++ + ...+++ .+-...++..|....+.+....++..+-.+...++. |. ++.
T Consensus 183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~ 262 (383)
T 3eg5_B 183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM 262 (383)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999998764 4 444433 345778888885545677777777776666664432 22 233
Q ss_pred hcCChHHHHHHhhcC
Q 039015 586 HHGALDMIMKILDSC 600 (685)
Q Consensus 586 ~~g~v~~Lv~lL~~~ 600 (685)
.. |+..++.-|+..
T Consensus 263 ~~-Gl~~il~~lr~~ 276 (383)
T 3eg5_B 263 RL-GLHQVLQELREI 276 (383)
T ss_dssp HT-THHHHHHHHTTS
T ss_pred HC-ChHHHHHHHhcC
Confidence 43 555566556654
No 184
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=85.38 E-value=1.1 Score=49.12 Aligned_cols=184 Identities=17% Similarity=0.159 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH-hcCcHHHHHHHhcC
Q 039015 395 EKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV-ESGGLDFIVDMVKK 473 (685)
Q Consensus 395 ~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~ 473 (685)
+|..|+.+|..+ ..-+.. ..++..|+..+....-+++-.++-.|..+ ++.+. =.++++.++.-|+.
T Consensus 244 VRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 244 VRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSS 310 (800)
T ss_dssp HHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCC
Confidence 455666666666 433322 33444555555667788999999998888 11111 25678888888888
Q ss_pred CCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCC--HHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHH
Q 039015 474 GLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGT--DRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLL 551 (685)
Q Consensus 474 ~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~L 551 (685)
. +.+++..||.+|..++ .++. + ...+..|-+.|.+-+ .......+..|..|+.++.+. ......||.|
T Consensus 311 ~-DDDVRAVAAetLiPIA-~p~~---l---~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL 380 (800)
T 3oc3_A 311 P-DEDIKLLSAELLCHFP-ITDS---L---DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDI 380 (800)
T ss_dssp S-SHHHHHHHHHHHTTSC-CSST---H---HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGT
T ss_pred c-ccHHHHHHHHHhhhhc-chhh---H---HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHH
Confidence 8 8999999999999998 1111 1 113333444444322 223344455666665554321 1123677888
Q ss_pred HHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHH-HhhcCCChhHHHHHHHHH
Q 039015 552 LNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMK-ILDSCTSRAGKEYCVSLL 613 (685)
Q Consensus 552 v~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~-lL~~~~s~~~~e~a~~~L 613 (685)
.-.| ..+-..++..++.+|..+. ....+..+.+ +|=.. ++.+.+.+..+.
T Consensus 381 ~PFL-RHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~-neeIl~lS~~VW 431 (800)
T 3oc3_A 381 FPCF-TSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEE-KDEIREMAIKLL 431 (800)
T ss_dssp GGGG-TCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred Hhhh-cCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence 8888 5667889999988887776 1112444444 33333 667777666655
No 185
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=85.36 E-value=4.8 Score=43.34 Aligned_cols=121 Identities=19% Similarity=0.178 Sum_probs=80.5
Q ss_pred cCCCCHHHHHHHHHHHHHhc-CchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHH
Q 039015 472 KKGLKVEARQHAAATLFYIA-SIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPL 550 (685)
Q Consensus 472 ~~~~~~e~~~~Aa~~L~~Ls-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~ 550 (685)
.+| +..++..|+..+.... ..++.. ..+|.++++|..+.+..+++.|+..|..+|.+ ++..+++ ..
T Consensus 38 ~kg-~~k~K~LaaQ~I~kffk~FP~l~------~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kia-----Dv 104 (507)
T 3u0r_A 38 VKG-GTKEKRLAAQFIPKFFKHFPELA------DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVA-----DI 104 (507)
T ss_dssp GGS-CHHHHHHHHHHHHHHGGGCGGGH------HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHH-----HH
T ss_pred cCC-CHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHH-----HH
Confidence 356 7899999999987654 444544 23688999999999999999999999999988 7766655 45
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHh-cChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHH
Q 039015 551 LLNLLTSSDSEELITDSLAVLATLA-EKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLA 615 (685)
Q Consensus 551 Lv~lL~~~~~~~~~~~al~~L~~La-~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~ 615 (685)
|+++|.++.. .-...+-..|..|- .++. +.+..+..-+..+ .+.+++.++..|..
T Consensus 105 L~QlLqtdd~-~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~-~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 105 LTQLLQTDDS-AEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG-EDIVRERAIKFLST 160 (507)
T ss_dssp HHHHTTCCCH-HHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHhccch-HHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc-chHHHHHHHHHHHH
Confidence 9999964433 32333333333332 2222 1234444433345 77788887777744
No 186
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=83.35 E-value=11 Score=38.71 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=88.4
Q ss_pred HhhccccCcch-hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc-cCCHHH
Q 039015 444 ALLNLSKHCKS-KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR-DGTDRS 521 (685)
Q Consensus 444 aL~nLs~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~ 521 (685)
-|+||-.++.| -.-++..+++..+..+.+.. +.++.......|...|.....+..= - ...+|.++..+. ++++++
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~t~-L-~e~LPFi~~~i~~h~eDdv 341 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAKTP-L-ENILPFLLRLIEIHPDDEV 341 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGTSC-C-TTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhhcc-c-cccchHHHHHhccCCCcce
Confidence 35677777766 67888999999999999999 8999888888888887655433222 1 457899999886 677888
Q ss_pred HHHHHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhc
Q 039015 522 KKNALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLT 556 (685)
Q Consensus 522 ~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~ 556 (685)
.-...+.|.|...+.. .+...+..|+++.|-..+.
T Consensus 342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 8899999999998775 6777899999999988874
No 187
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.28 E-value=3 Score=33.74 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=37.3
Q ss_pred CCccCcCccccCC-----Cceec--cCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 279 DDFTCPISLEIMK-----DPVTL--STGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 279 ~~~~CpIc~~~m~-----dPv~~--~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
..-.|.||.+-.- +|.+. .|+...||.|++-=.++|+..||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4468999997643 22222 588899999998888889999999988775
No 188
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=82.59 E-value=26 Score=36.86 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=98.5
Q ss_pred cCcHHHHHHHhcC----CC------CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 039015 461 SGGLDFIVDMVKK----GL------KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAIF 530 (685)
Q Consensus 461 ~g~i~~Lv~lL~~----~~------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 530 (685)
.+|+..|+.+|.. +. +......++..|..+.-+......+...+++|..|+..|.+.++.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 6788888888751 11 2455677888888888777666666666899999999998888999999999999
Q ss_pred HhcCCCC--c-HHHHHh----------cCChHHHHHHhccCCChhHHHHHHHHHHHHhcChhc-------HHHHHhcCCh
Q 039015 531 GLLMHSG--N-HWRFLA----------AGAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDG-------TIAILHHGAL 590 (685)
Q Consensus 531 nLs~~~~--n-~~~iv~----------~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~-------~~~i~~~g~v 590 (685)
.+|..++ + ...+++ ..-...+|+.|..+.+.++...++..+-.+...++. |.++.. -|+
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~-~GL 204 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMR-LGL 204 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-TTH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-CCh
Confidence 9997664 4 444332 335677888885556677777777777777665443 233444 356
Q ss_pred HHHHHHhhcCCChhH
Q 039015 591 DMIMKILDSCTSRAG 605 (685)
Q Consensus 591 ~~Lv~lL~~~~s~~~ 605 (685)
..++.-|+...++..
T Consensus 205 ~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 205 HQVLQELREIENEDM 219 (386)
T ss_dssp HHHHHHHTTCCCHHH
T ss_pred HHHHHHHhccCChhH
Confidence 666665554324443
No 189
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=79.58 E-value=70 Score=37.62 Aligned_cols=176 Identities=11% Similarity=0.039 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHh---c--cCCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHH
Q 039015 476 KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMV---R--DGTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPL 550 (685)
Q Consensus 476 ~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL---~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~ 550 (685)
+...++.|..++..++....... ...++.++.++ . +.++.++..++++|..++..-........ .+++.
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl~~ 550 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAINL 550 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHH
Confidence 56788888888888876442211 23455555544 2 23688899999999988743221111111 24555
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhc--CChHHHHHHhhcC-CChhHHHHHHHHHHHHhccCc-HHHHH
Q 039015 551 LLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHH--GALDMIMKILDSC-TSRAGKEYCVSLLLALCINGG-ANVVA 626 (685)
Q Consensus 551 Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~--g~v~~Lv~lL~~~-~s~~~~e~a~~~L~~L~~~~~-~~~~~ 626 (685)
|+..| + +.+...|+.++.+++. ..+..+... +.+..+..++..+ .+...+..+..++..++..-+ ++...
T Consensus 551 l~~~l-~---~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 551 LVRGL-N---SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHH-H---SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHh-C---hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 66666 2 5788999999999985 333444211 1244555566653 156788888888888876432 22222
Q ss_pred HHHhc-CCcHHHHHHHHhcC--ChHHHHHHHHHHHHHHHh
Q 039015 627 LLVKS-PSLMGSLYSLLSQG--SSRASKKASALIRILHEF 663 (685)
Q Consensus 627 ~l~~~-~g~i~~L~~Ll~~g--~~~~k~~A~~lL~~l~~~ 663 (685)
.+..- .-++..+..++++. ++..+..+...+..|...
T Consensus 625 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~ 664 (971)
T 2x1g_F 625 YLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTL 664 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence 22110 11223333444443 344555566666666543
No 190
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=78.31 E-value=22 Score=42.07 Aligned_cols=208 Identities=14% Similarity=0.152 Sum_probs=108.6
Q ss_pred CHHHHHHhhcC-----CCHHHHHHHHHHhhccccC---------cch-hHHHHh--cCcHHHHHHHhcCCC-------CH
Q 039015 422 CIPSLLKLLSS-----KDSSTQENAIAALLNLSKH---------CKS-KSMVVE--SGGLDFIVDMVKKGL-------KV 477 (685)
Q Consensus 422 ~ip~Lv~lL~s-----~~~~~~~~A~~aL~nLs~~---------~~~-k~~i~~--~g~i~~Lv~lL~~~~-------~~ 477 (685)
.++.|+.+... .+..+...++..+..++.. ... +..+.. ...++.++..+.... +.
T Consensus 349 ~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~ 428 (971)
T 2x1g_F 349 IVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSS 428 (971)
T ss_dssp HHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCH
T ss_pred HHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCH
Confidence 45555555433 4677888888877666431 111 111111 244555555553221 11
Q ss_pred -------HHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc-----CCHHHHHHHHHHHHHhcCCCCcHHHHHhc
Q 039015 478 -------EARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRD-----GTDRSKKNALVAIFGLLMHSGNHWRFLAA 545 (685)
Q Consensus 478 -------e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~A~~aL~nLs~~~~n~~~iv~~ 545 (685)
+.|..++.+|..++..-. ...+.. .++.+-..+.+ .+...++.|+.+|..++....... .
T Consensus 429 ~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~---~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~----~ 500 (971)
T 2x1g_F 429 DDLECFRCYRQDISDTFMYCYDVLN-DYILEI---LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE----K 500 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCT-THHHHH---HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHH---HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----h
Confidence 244556666665553221 111111 22223333332 456788899999999875433211 1
Q ss_pred CChHHHHHHhc--c--CCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCc
Q 039015 546 GAVPLLLNLLT--S--SDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGG 621 (685)
Q Consensus 546 G~v~~Lv~lL~--~--~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~ 621 (685)
..++.++.++. . +.++.++..++.++..++..-......+. ..++.|+..|. +.++..|+.++..+|...+
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl~~l~~~l~----~~v~~~A~~al~~l~~~~~ 575 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAINLLVRGLN----SSMSAQATLGLKELCRDCQ 575 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHHHHHHHHHH----SSCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHhC----hHHHHHHHHHHHHHHHHHH
Confidence 33444554431 1 34788999999999988763111111111 12445555442 5789999999999998765
Q ss_pred HHHHHHHHhcCCcHHHHHHHHhcC
Q 039015 622 ANVVALLVKSPSLMGSLYSLLSQG 645 (685)
Q Consensus 622 ~~~~~~l~~~~g~i~~L~~Ll~~g 645 (685)
......+ ..++..|..++..+
T Consensus 576 ~~l~p~~---~~ll~~l~~~l~~~ 596 (971)
T 2x1g_F 576 LQLKPYA---DPLLNACHASLNTG 596 (971)
T ss_dssp HHHHHHH---HHHHHHHHHHHHST
T ss_pred HhccccH---HHHHHHHHHHHcCC
Confidence 4433322 24566777777764
No 191
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=76.83 E-value=22 Score=41.98 Aligned_cols=155 Identities=13% Similarity=0.119 Sum_probs=95.3
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhh---cCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHH
Q 039015 389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL---SSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLD 465 (685)
Q Consensus 389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL---~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~ 465 (685)
.+.+...+..++.++..++..-...- ...++.++..| .++++.++..+++++..++..-...... =..+++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM-INSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH-HTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHH
Confidence 45678888999999999987543211 22344454443 2357889999999999887542211122 246888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhc-CCCcHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCC--cHH
Q 039015 466 FIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGE-NPEAIPALVDMVRDG--TDRSKKNALVAIFGLLMHSG--NHW 540 (685)
Q Consensus 466 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~~--n~~ 540 (685)
.|+..|.+ +.++..|+.+|.+++. +.+..+.. -.+.+..|..++..+ +...+..+..++..+....+ ...
T Consensus 533 ~l~~~l~~---~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 533 LVLHALGN---PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHTTC---GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhCC---chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 88888854 6789999999999984 33333322 012344445555543 45777788888888875433 233
Q ss_pred HHHhcCChHHHHHHh
Q 039015 541 RFLAAGAVPLLLNLL 555 (685)
Q Consensus 541 ~iv~~G~v~~Lv~lL 555 (685)
..+ ...+++++..+
T Consensus 608 ~~~-~~l~~~l~~~l 621 (963)
T 2x19_B 608 KNL-HSLISPYIQQL 621 (963)
T ss_dssp HHH-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHH
Confidence 222 22455555544
No 192
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=74.32 E-value=30 Score=35.61 Aligned_cols=116 Identities=11% Similarity=0.072 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHH--hcCcHHHHHHHhc
Q 039015 395 EKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVV--ESGGLDFIVDMVK 472 (685)
Q Consensus 395 ~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~--~~g~i~~Lv~lL~ 472 (685)
+..++...|..|. ++...-.-++.+++|..+......++.++.......|+..|... ..-. -...+|.++..+.
T Consensus 259 VvtR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDak---sL~~t~L~e~LPFi~~~i~ 334 (619)
T 3c2g_A 259 VIIRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAK---ALAKTPLENILPFLLRLIE 334 (619)
T ss_dssp HHHHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCG---GGGTSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchH---HHhhccccccchHHHHHhc
Confidence 4456677676666 45566778999999999999999999999999999999887433 2222 2467888888887
Q ss_pred CCCCHHHHHHHHHHHHHhcCchh-HHHHhhcCCCcHHHHHHHhc
Q 039015 473 KGLKVEARQHAAATLFYIASIEE-YRKLIGENPEAIPALVDMVR 515 (685)
Q Consensus 473 ~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~ 515 (685)
.....++.....+.|.|...+.. .|+.... .|+|+.|-+.+.
T Consensus 335 ~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~-~nAI~LLh~~I~ 377 (619)
T 3c2g_A 335 IHPDDEVIYSGTGFLSNVVAHKQHVKDIAIR-SNAIFLLHTIIS 377 (619)
T ss_dssp HCCCHHHHHHHHHHHHHHSTTCHHHHHHHHH-TTHHHHHHHHHH
T ss_pred cCCCcceEEecchHHHHHHhcccchHHHHhc-cCcHHHHHHHHh
Confidence 44389999999999999987774 4444444 899999998764
No 193
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=73.83 E-value=41 Score=40.25 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=128.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccC------cc
Q 039015 381 ANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS-SKDSSTQENAIAALLNLSKH------CK 453 (685)
Q Consensus 381 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~-s~~~~~~~~A~~aL~nLs~~------~~ 453 (685)
+..++..+-+++.+.|.+|-..|..+-+ ++ +++..+..+|. +.+..++-.|+..|.|.... ++
T Consensus 18 l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~ 87 (1049)
T 3m1i_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1049)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHH
Confidence 4555555556666778888888887754 33 34445556564 46788999999999887432 22
Q ss_pred hhHHHHhcCcHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHH
Q 039015 454 SKSMVVESGGLDFIVDMVKKGL----KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI 529 (685)
Q Consensus 454 ~k~~i~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL 529 (685)
.|..|. ...+..+...-..+. +.-++...+.++..++..+-. ..=++.++.|+.+++ +++..+..++.+|
T Consensus 88 ~~~~ir-~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p----~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L 161 (1049)
T 3m1i_C 88 HRIGIR-NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSS-SSVNVCENNMIVL 161 (1049)
T ss_dssp HHHHHH-HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 344432 333444433321110 145566677777777654311 122578999999986 5666677778887
Q ss_pred HHhcCC-----CC----cH-----HHHHhc--CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHH
Q 039015 530 FGLLMH-----SG----NH-----WRFLAA--GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMI 593 (685)
Q Consensus 530 ~nLs~~-----~~----n~-----~~iv~~--G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~L 593 (685)
..|+.. .+ .+ ..+.+. .++..+..+|....+..+...++.++......-. ...+.+..-++.+
T Consensus 162 ~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~-~~~~~~~~ll~~l 240 (1049)
T 3m1i_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP-YRYIYETNILELL 240 (1049)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHH
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC-HHHHhhhhHHHHH
Confidence 777621 11 11 122221 1233345555444567788889998887765322 1224444445655
Q ss_pred HH-HhhcCCChhHHHHHHHHHHHHhcc
Q 039015 594 MK-ILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 594 v~-lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
.+ ++ . ++..+..|+.+|..+...
T Consensus 241 ~~~~l--~-~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 241 STKFM--T-SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HTHHH--H-SHHHHHHHHHHHHHHHHC
T ss_pred HHHhC--C-CHhHHHHHHHHHHHHHhC
Confidence 53 33 2 778899999999988865
No 194
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=73.16 E-value=1.5e+02 Score=34.69 Aligned_cols=217 Identities=12% Similarity=-0.017 Sum_probs=123.5
Q ss_pred HHHHHHH-hcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccC------c
Q 039015 381 ANFISDR-LLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKH------C 452 (685)
Q Consensus 381 i~~Lv~~-L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~------~ 452 (685)
+..++.. ..+++.+.+.+|-..|..+-+ ++ ++++.+..+|.+ .+..++-.|+..|.|.... +
T Consensus 26 l~~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~ 95 (963)
T 2x19_B 26 VEKALHQLYYDPNIENKNLAQKWLMQAQV-SP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPT 95 (963)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-ST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCH
Confidence 4445554 456788889888888888765 33 455666777754 6788999999999887432 2
Q ss_pred chhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc-----CCHHHHHHHHH
Q 039015 453 KSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRD-----GTDRSKKNALV 527 (685)
Q Consensus 453 ~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~A~~ 527 (685)
+.|..|. ...+..+... ..+ +.-++...+.+|..++..+-.. .=++.++.|+.++++ +++.....++.
T Consensus 96 ~~~~~ir-~~ll~~l~~~-~~~-~~~ir~kl~~~la~i~~~~~p~----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 168 (963)
T 2x19_B 96 DQYESLK-AQLFTQITRF-ASG-SKIVLTRLCVALASLALSMMPD----AWPCAVADMVRLFQAEDSPVDGQGRCLALLE 168 (963)
T ss_dssp GGHHHHH-HHHHHHHHHT-TTS-CHHHHHHHHHHHHHHHHHHTTT----TSTTHHHHHHHHHCC------CHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHH-cCC-CHHHHHHHHHHHHHHHHHhCcc----ccchHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 3344443 3344444442 224 5778888888888887653111 125789999998875 25556777888
Q ss_pred HHHHhcCC---C---CcHHHHHhc---CChHHH----HHHhccCCC-hhHHHHHHHHHHHHhcChhcHHHHHhcCChHHH
Q 039015 528 AIFGLLMH---S---GNHWRFLAA---GAVPLL----LNLLTSSDS-EELITDSLAVLATLAEKLDGTIAILHHGALDMI 593 (685)
Q Consensus 528 aL~nLs~~---~---~n~~~iv~~---G~v~~L----v~lL~~~~~-~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~L 593 (685)
.|..|+.. . ..+...++. +.++.+ ..++....+ ..+...++.++.......... ......++.+
T Consensus 169 iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~--~~~~~ll~~l 246 (963)
T 2x19_B 169 LLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPL--QDCEALIQAA 246 (963)
T ss_dssp HHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCG--GGTHHHHHHH
T ss_pred HHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCc--ccchHHHHHH
Confidence 88877621 1 111111111 123434 444422222 236666776664433211100 0001114444
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcc
Q 039015 594 MKILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 594 v~lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
.+.+. .+..++.|+.+|..+...
T Consensus 247 ~~~l~---~~~~~~~a~~~l~~i~~~ 269 (963)
T 2x19_B 247 FAALQ---DSELFDSSVEAIVNAISQ 269 (963)
T ss_dssp HHHTT---STTTHHHHHHHHHHHHTC
T ss_pred HHHhC---CchHHHHHHHHHHHHHcc
Confidence 44442 668889999999998875
No 195
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=72.87 E-value=7.2 Score=30.76 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=35.0
Q ss_pred CCCCCccCcCccccCCCceeccC----cccccHHHHHHHHHc----CCCCCCC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLST----GHTYDRASILKWFRA----GNSTCPK 320 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~c----ghtfcr~ci~~~~~~----~~~~CP~ 320 (685)
.....+.|.+|.+-++|--.+.| +|.||-.|-..+++. +.-.||.
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 34566999999999999877644 799999999988874 2345664
No 196
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=71.37 E-value=29 Score=41.54 Aligned_cols=143 Identities=10% Similarity=0.053 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-----CCHHHHHHHHHHhhccccCcchhHHHHhcCcHH
Q 039015 391 GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-----KDSSTQENAIAALLNLSKHCKSKSMVVESGGLD 465 (685)
Q Consensus 391 ~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-----~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~ 465 (685)
.+...+..++.+++.++.+-......-.-..++|.|+.++.. ....++..++++|+..+..-...... =...+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HHHHHH
Confidence 478899999999999996433332222223457788887753 22334556678887766432211111 123444
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhh-----cCCCcHHHHHHHhc----cCCHHHHHHHHHHHHHhcCCC
Q 039015 466 FIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIG-----ENPEAIPALVDMVR----DGTDRSKKNALVAIFGLLMHS 536 (685)
Q Consensus 466 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~-----~~~g~i~~Lv~lL~----~~~~~~~~~A~~aL~nLs~~~ 536 (685)
.|+..|... ++.++..|+.++.+|+.. ++..+. +....++.++..+. .-+......+..++..+....
T Consensus 544 ~L~~~l~~~-~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHET-HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCS-CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcC-CHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 555555545 678999999999999873 344342 11124555555433 335566667777888877655
Q ss_pred C
Q 039015 537 G 537 (685)
Q Consensus 537 ~ 537 (685)
+
T Consensus 621 ~ 621 (1023)
T 4hat_C 621 R 621 (1023)
T ss_dssp C
T ss_pred C
Confidence 4
No 197
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=71.20 E-value=44 Score=39.92 Aligned_cols=221 Identities=14% Similarity=0.136 Sum_probs=132.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccC-----cc
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLS-SKDSSTQENAIAALLNLSKH-----CK 453 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~-s~~~~~~~~A~~aL~nLs~~-----~~ 453 (685)
.+..++..+-+++.+.|.+|-..|..+-+ +++ ++..+..+|. +.++.++--|+..|.+.-.. ++
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp~---------aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~ 86 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPD---------AWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CTT---------GGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHc-Ccc---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 45666666656666678888888877765 443 3334445553 46788999999998776442 22
Q ss_pred hhHHHHhcCcHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHH
Q 039015 454 SKSMVVESGGLDFIVDMVKKGL----KVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVAI 529 (685)
Q Consensus 454 ~k~~i~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL 529 (685)
.....+....+..+......+. ..-++...+.++..++..+-. ..=++.++.|+.++.. ++.....++..|
T Consensus 87 e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p----~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL 161 (1023)
T 4hat_C 87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSSS-SVNVCENNMIVL 161 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh----hhchHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 2222234445555555432210 133444566666666544310 0125788889998865 445566777777
Q ss_pred HHhcCC------CC---cHH-----HHHhc--CChHHHHHHhccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHH
Q 039015 530 FGLLMH------SG---NHW-----RFLAA--GAVPLLLNLLTSSDSEELITDSLAVLATLAEKLDGTIAILHHGALDMI 593 (685)
Q Consensus 530 ~nLs~~------~~---n~~-----~iv~~--G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~L 593 (685)
..|+.. .+ .|. .+.+. .+++.+..+|....+..+...++.++......- .-..+.+.+-++.+
T Consensus 162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI-~i~~i~~~~ll~~l 240 (1023)
T 4hat_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWI-PYRYIYETNILELL 240 (1023)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTS-CTHHHHSSSHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC-CHHHhcchhHHHHH
Confidence 666421 11 111 12221 234445555644556788888999998887642 23446666668888
Q ss_pred H-HHhhcCCChhHHHHHHHHHHHHhcc
Q 039015 594 M-KILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 594 v-~lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
. .++. ++..++.|+.+|..+...
T Consensus 241 ~~~~L~---~~~~r~~A~ecL~eIv~~ 264 (1023)
T 4hat_C 241 STKFMT---SPDTRAITLKCLTEVSNL 264 (1023)
T ss_dssp HTHHHH---SHHHHHHHHHHHHHHHTS
T ss_pred HHHHcC---CHHHHHHHHHHHHHHHcc
Confidence 8 7774 678999999999999873
No 198
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=70.07 E-value=2.2 Score=34.90 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=38.1
Q ss_pred CCCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 277 TPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 277 ~~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
.-.-+.|..|-...+ -.+..+.|..|+.|+...+.. ...||+|+.+|..+
T Consensus 25 ~~G~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred ccCcccChhhccccC-CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 344578888876655 344466799999999888776 77899999999764
No 199
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=68.21 E-value=12 Score=33.72 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-CchhhHHHhhCCHHHHHHhhcC------CCHHHHHHHHHHhhccc
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSS-IFNRSCLVEVGCIPSLLKLLSS------KDSSTQENAIAALLNLS 449 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~ip~Lv~lL~s------~~~~~~~~A~~aL~nLs 449 (685)
+.++..|.++|.++++.++..|+..|..+.++. ..-+..++...++..|++++.. .+..+++.++..+..-+
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 346788899999999999999999999999863 3445677777889999998864 46789998888886655
No 200
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=67.66 E-value=9.5 Score=34.96 Aligned_cols=72 Identities=7% Similarity=-0.035 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-CchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccc
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSS-IFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLS 449 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs 449 (685)
+.++..|.++|.++++.++..|+..|..+.++. ..-+..+....++..|+.++.. .++.+++.++..+..-+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 346788899999999999999999999998853 3345566667788888888875 67788888888776554
No 201
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=62.53 E-value=12 Score=33.30 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=52.9
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhc-----CC---hHHHHHHHHHHHHHHH
Q 039015 591 DMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQ-----GS---SRASKKASALIRILHE 662 (685)
Q Consensus 591 ~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~-----g~---~~~k~~A~~lL~~l~~ 662 (685)
..|.+=|... ++.++-.|+.+|..||.++.+.++..+.+....|..|..+-.- |. ..++.+|..|+.+|..
T Consensus 52 ~~L~kRL~~k-~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 52 EFILKRLDNK-SPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp HHHHHHHTSS-SHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCC-CcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 4466656666 8889999999999999999999999888855444444433322 21 3478999999999876
Q ss_pred h
Q 039015 663 F 663 (685)
Q Consensus 663 ~ 663 (685)
.
T Consensus 131 ~ 131 (140)
T 1vdy_A 131 E 131 (140)
T ss_dssp C
T ss_pred c
Confidence 4
No 202
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=62.21 E-value=12 Score=34.62 Aligned_cols=72 Identities=10% Similarity=0.114 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-CchhhHHHhhCCHHHHHHhhcC------CCHHHHHHHHHHhhccc
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSS-IFNRSCLVEVGCIPSLLKLLSS------KDSSTQENAIAALLNLS 449 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~ip~Lv~lL~s------~~~~~~~~A~~aL~nLs 449 (685)
+.++..|.++|.++++.++..|+..|..+.++. ..-+..+....++..|+.++.. .+..+++.++..+..-+
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 345788899999999999999999999999853 3445567777889999998863 45788998888886655
No 203
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=59.10 E-value=15 Score=32.56 Aligned_cols=72 Identities=8% Similarity=-0.056 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc-hhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccc
Q 039015 378 KLLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF-NRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLS 449 (685)
Q Consensus 378 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~-~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs 449 (685)
+.++..|.++|.++++.++..|+..|..+.++... -...+..-.++..|+.+++..++.++...+..+...+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999998875422 2445556677778888887788899999988887665
No 204
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=58.80 E-value=22 Score=31.57 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=56.3
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQGSSRASKKASALIRILHEFY 664 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 664 (685)
+..|.+-|.++ ++.++-.|+.+|-.+..++|......+.. ..++.-|..++...++.+++++..++.......
T Consensus 44 ~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas-~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 44 LRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCS-RDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSS-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 45566667777 89999999999999888888877666654 456777888887788899999888888665543
No 205
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=58.17 E-value=84 Score=30.48 Aligned_cols=142 Identities=15% Similarity=0.042 Sum_probs=92.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHhhccccCcchhHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcC
Q 039015 424 PSLLKLLSSKDSSTQENAIAALLNLSKHCKSKSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGEN 503 (685)
Q Consensus 424 p~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~ 503 (685)
+..-.+..++..+++..|+.+|..+ . -....++.+...+..+.+..+++.++.++..++... +-
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~------~p- 137 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI------EY- 137 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH------CT-
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc------CH-
Confidence 4444566667789999999988776 2 112345666663444448999999999888776411 11
Q ss_pred CCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC---CcHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-hh
Q 039015 504 PEAIPALVDMVRDGTDRSKKNALVAIFGLLMHS---GNHWRFLAAGAVPLLLNLLTSSDSEELITDSLAVLATLAEK-LD 579 (685)
Q Consensus 504 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~---~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~-~~ 579 (685)
...++.+...+++++..++..|...+.--+... .+... +++ ++.-|..+++.-++......|.-++.. |+
T Consensus 138 e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~-----ll~-iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 138 KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNE-----AIR-RIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHH-----HHH-HHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHH-----HHH-HHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 126788889999999999998888765422211 11111 233 333333677888889999999999884 66
Q ss_pred cHHHHHhc
Q 039015 580 GTIAILHH 587 (685)
Q Consensus 580 ~~~~i~~~ 587 (685)
-...+++.
T Consensus 212 ~V~~~~~~ 219 (240)
T 3l9t_A 212 LVKIELKN 219 (240)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 55555553
No 206
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=56.06 E-value=31 Score=33.96 Aligned_cols=130 Identities=14% Similarity=0.138 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHH-HhhcCCCHHHHHHHHHHhhccccCcc-hhHHHHhcCcHHHHHHHhc
Q 039015 395 EKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLL-KLLSSKDSSTQENAIAALLNLSKHCK-SKSMVVESGGLDFIVDMVK 472 (685)
Q Consensus 395 ~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv-~lL~s~~~~~~~~A~~aL~nLs~~~~-~k~~i~~~g~i~~Lv~lL~ 472 (685)
.+.-++..+|.++.+.+.+ +.+..++ ..+.+.++..+-.++++++|+..++. ++..+........++..+.
T Consensus 70 ~~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~ 142 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETID 142 (253)
T ss_dssp CCHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSC
T ss_pred ccchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHH
Confidence 4677888888888644332 2333333 23445577899999999999999998 7877765544555555542
Q ss_pred CC-------CCHHHHHHHHHHHHHhcCchhH-HHHhhcCCCcHHHHHHHhcc---------CCHHHHHHHHHHHHHhcCC
Q 039015 473 KG-------LKVEARQHAAATLFYIASIEEY-RKLIGENPEAIPALVDMVRD---------GTDRSKKNALVAIFGLLMH 535 (685)
Q Consensus 473 ~~-------~~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~lL~~---------~~~~~~~~A~~aL~nLs~~ 535 (685)
.. .+..++..++.+++|+|..... +. . ......+++.+.. .+.++.-.++.||.+|...
T Consensus 143 ~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~-~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 143 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D-LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C-TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h-HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 21 1456788888889999864321 11 1 3345566666542 2667788888899988753
No 207
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=55.70 E-value=1.3e+02 Score=36.63 Aligned_cols=220 Identities=10% Similarity=0.046 Sum_probs=121.3
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhh--cCCCHHHHHHHHHHhhccccC-----
Q 039015 381 ANFISDRLLE--GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLL--SSKDSSTQENAIAALLNLSKH----- 451 (685)
Q Consensus 381 i~~Lv~~L~s--~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL--~s~~~~~~~~A~~aL~nLs~~----- 451 (685)
+..++..+-+ ++.+.|.+|-..|..+-+ ++ .+.+.+...| .+.+..++-.|+..|.|....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 4444444333 366778888888887754 22 1334444433 346788999999999876432
Q ss_pred -cchhHHHHhcCcHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHH
Q 039015 452 -CKSKSMVVESGGLDFIVDMVKKG--LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVA 528 (685)
Q Consensus 452 -~~~k~~i~~~g~i~~Lv~lL~~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~a 528 (685)
++.|..|. ...+..+...-..+ ...-++...+.++..++..+-. ..=++.++.|+.++.+ ++..+..++.+
T Consensus 83 ~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~i 156 (1204)
T 3a6p_A 83 SRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFI 156 (1204)
T ss_dssp CHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 23344443 33444443321110 2567777888888887765311 1226789999999876 55667778888
Q ss_pred HHHhcCC---CC----cHHH-----HHhc--CChHHHHHHhccC------------------CChhHHHHHHHHHHHHhc
Q 039015 529 IFGLLMH---SG----NHWR-----FLAA--GAVPLLLNLLTSS------------------DSEELITDSLAVLATLAE 576 (685)
Q Consensus 529 L~nLs~~---~~----n~~~-----iv~~--G~v~~Lv~lL~~~------------------~~~~~~~~al~~L~~La~ 576 (685)
|..|+.. .+ .+.. +.+. .+++.+..+|... .+..+...++.++.+...
T Consensus 157 L~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~ 236 (1204)
T 3a6p_A 157 LLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID 236 (1204)
T ss_dssp HHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 8888632 11 1111 2211 1233333334210 112344555555554433
Q ss_pred ChhcHHHHHhcC--ChHHHHHHhhcCCChhHHHHHHHHHHHHhccC
Q 039015 577 KLDGTIAILHHG--ALDMIMKILDSCTSRAGKEYCVSLLLALCING 620 (685)
Q Consensus 577 ~~~~~~~i~~~g--~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~ 620 (685)
. .....+.+.. -++.+..++. ++..+..|+.+|..++...
T Consensus 237 W-i~~~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 237 W-VSMSHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp T-SCHHHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCC
T ss_pred c-cCHHHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCC
Confidence 2 1223334433 2555554443 6788999999999999765
No 208
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=55.52 E-value=1.3e+02 Score=36.17 Aligned_cols=218 Identities=14% Similarity=0.091 Sum_probs=133.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccC-----cc
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLSKH-----CK 453 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs~~-----~~ 453 (685)
.++.++..+-+++.+.|.+|-..|..+-+ +++ ++..+..+|.. .++.++--|+..|.+.-.. ++
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 46667777767778888888887776643 443 34444455544 5788999999999877542 22
Q ss_pred -hhHHHHhcCcHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHH
Q 039015 454 -SKSMVVESGGLDFIVDMVKKG----LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTDRSKKNALVA 528 (685)
Q Consensus 454 -~k~~i~~~g~i~~Lv~lL~~~----~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~a 528 (685)
.|..+ ....+..+...-..+ .+...+...+.++..++..+-. . .=++.++-|+.++.. ++......+..
T Consensus 99 e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~---~Wp~fi~dLv~~~~~-~~~~~~~~L~I 172 (1073)
T 3gjx_A 99 NQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-K---HWPTFISDIVGASRT-SESLCQNNMVI 172 (1073)
T ss_dssp HHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-T---TCTTHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhCh-h---hccHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 23333 344555555543321 1355566666666666543210 0 125678888888764 45667778888
Q ss_pred HHHhcCC--CC-------c-----HHHHHhcCChHHHHHH----hccCCChhHHHHHHHHHHHHhcChhcHHHHHhcCCh
Q 039015 529 IFGLLMH--SG-------N-----HWRFLAAGAVPLLLNL----LTSSDSEELITDSLAVLATLAEKLDGTIAILHHGAL 590 (685)
Q Consensus 529 L~nLs~~--~~-------n-----~~~iv~~G~v~~Lv~l----L~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v 590 (685)
|..|+.. +- . +..+.+. ++.++.+ |....++.+...++.+|......-. -..+.+.+-+
T Consensus 173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~ll 249 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFETKLI 249 (1073)
T ss_dssp HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhccchHH
Confidence 8877632 11 1 1122222 4444444 4345677888889999999987532 2456666657
Q ss_pred HHHH-HHhhcCCChhHHHHHHHHHHHHhcc
Q 039015 591 DMIM-KILDSCTSRAGKEYCVSLLLALCIN 619 (685)
Q Consensus 591 ~~Lv-~lL~~~~s~~~~e~a~~~L~~L~~~ 619 (685)
+.|+ .++ + ++..++.|+.+|..+...
T Consensus 250 ~~L~~~~L--~-~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 250 STLIYKFL--N-VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHTS--S-SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhc--C-ChHHHHHHHHHHHHHHhc
Confidence 7664 455 3 779999999999998865
No 209
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=55.15 E-value=6.9 Score=33.82 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=39.6
Q ss_pred CCCccCcCccccCCC---ceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCC
Q 039015 278 PDDFTCPISLEIMKD---PVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKEL 330 (685)
Q Consensus 278 ~~~~~CpIc~~~m~d---Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l 330 (685)
++-|.|..|...+.+ .....-|..||..|..+.|.. ...|..|++++....+
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 345999999999974 345567889999999887753 3379999998875443
No 210
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=54.72 E-value=1.9e+02 Score=34.62 Aligned_cols=171 Identities=15% Similarity=0.129 Sum_probs=95.6
Q ss_pred HHHHHHhhcC----CCHHHHHHHHHHhhcccc----Ccch-hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 039015 423 IPSLLKLLSS----KDSSTQENAIAALLNLSK----HCKS-KSMVVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI 493 (685)
Q Consensus 423 ip~Lv~lL~s----~~~~~~~~A~~aL~nLs~----~~~~-k~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~ 493 (685)
+..+..++.+ .++.++..|+-++..|.. +... ...++ .-....+.+.+.++ +.+.+..++.+|.|+-.
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~-~~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRA-KEEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcC-ChHHHHHHHHHhhccCC-
Confidence 4445556655 455666667766666642 2111 11111 11233344445667 77778888888888855
Q ss_pred hhHHHHhhcCCCcHHHHHHHhcc-------CCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhcc-CCChhHHH
Q 039015 494 EEYRKLIGENPEAIPALVDMVRD-------GTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTS-SDSEELIT 565 (685)
Q Consensus 494 ~~~~~~i~~~~g~i~~Lv~lL~~-------~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-~~~~~~~~ 565 (685)
++.++.|..++.. ...+++..|+.||.++....... +-+.|+.++.+ ..+.+++.
T Consensus 470 ----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 470 ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp ----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHH
T ss_pred ----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHHHH
Confidence 2356777777642 13567788999999887432111 22346676632 34567776
Q ss_pred HHHHHHHHHhcChhcHHHHHhcCChHHHHHHhhcCCChhHHHHHHHHHHHHhccCcH
Q 039015 566 DSLAVLATLAEKLDGTIAILHHGALDMIMKILDSCTSRAGKEYCVSLLLALCINGGA 622 (685)
Q Consensus 566 ~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~ 622 (685)
.|+.+|... +|.. .-+..+...+...++..+.....+.|.+++....+
T Consensus 533 aA~~~Lm~t--~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 533 RSCIVFFES--KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHT--CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHH--CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 666555432 2221 11344555455433777777777777777766543
No 211
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=53.06 E-value=3.1 Score=27.46 Aligned_cols=15 Identities=20% Similarity=0.569 Sum_probs=12.0
Q ss_pred CccCcCccccCCCce
Q 039015 280 DFTCPISLEIMKDPV 294 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv 294 (685)
.|.||+|+..+..|-
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 489999998887764
No 212
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=52.56 E-value=38 Score=30.81 Aligned_cols=72 Identities=17% Similarity=0.126 Sum_probs=54.9
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHHHh
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQ-GSSRASKKASALIRILHEF 663 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~-g~~~~k~~A~~lL~~l~~~ 663 (685)
+..|.+-|.++ ++.++-.|+.+|-.+..+++......+.. ..++.-|+.++.. .++.+++++..++..-...
T Consensus 54 ~ral~krl~~~-n~~vql~AL~LLd~~vkNcG~~Fh~evas-~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 54 LKAIMKRVNHK-VPHVALQALTLLGACVANCGKIFHLEVCS-RDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHTCHHHHHHHTS-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHHhh-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 45566666777 89999999999999999988877766654 5577778888875 4678899988877766554
No 213
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=52.22 E-value=80 Score=30.64 Aligned_cols=142 Identities=15% Similarity=0.083 Sum_probs=87.2
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHH-hhcCCCHHHHHHHHHHhhcccc-CcchhHH
Q 039015 381 ANFISDRL-LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLK-LLSSKDSSTQENAIAALLNLSK-HCKSKSM 457 (685)
Q Consensus 381 i~~Lv~~L-~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~-lL~s~~~~~~~~A~~aL~nLs~-~~~~k~~ 457 (685)
+-.+...| .+...++|.-|+..|..+ . .....++.+.. +-..++-.+++.+..++..+.. ....
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~---------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S---------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T---------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c---------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 33444444 556678888888866655 2 11234566666 4445677899999999887764 2211
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCC-cHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPE-AIPALVDMVRDGTDRSKKNALVAIFGLLMHS 536 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g-~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 536 (685)
..++.+...++++ +..+|..|+..+.--+..+..+ ..+. +++.|-.+..+++.-+++...++|..++..+
T Consensus 139 ----~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k----~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 ----KALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFK----ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ----TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTT----TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhh----cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 1567788888888 9999998877765322221111 1112 3444444555566778888999999999765
Q ss_pred C-cHHHHHh
Q 039015 537 G-NHWRFLA 544 (685)
Q Consensus 537 ~-n~~~iv~ 544 (685)
+ -...+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 4 3333333
No 214
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=51.53 E-value=31 Score=30.95 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc-hhhHHHhhCCHHHHHHhhcC------CCHHHHHHHHHHhhccc
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF-NRSCLVEVGCIPSLLKLLSS------KDSSTQENAIAALLNLS 449 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~-~r~~i~~~G~ip~Lv~lL~s------~~~~~~~~A~~aL~nLs 449 (685)
.++..|.++|.+.++.++..|+..|..+.++... -...+....++..|+++++. .+..++...+..+..-+
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999885432 24566777888889998863 56788998888887665
No 215
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=51.37 E-value=3.6e+02 Score=31.77 Aligned_cols=212 Identities=10% Similarity=0.019 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCC---CHHHHHHHHHHhhcccc--Ccc----hhHHHHhc
Q 039015 391 GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSK---DSSTQENAIAALLNLSK--HCK----SKSMVVES 461 (685)
Q Consensus 391 ~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~---~~~~~~~A~~aL~nLs~--~~~----~k~~i~~~ 461 (685)
.+++.|.+|-..|..+-+ +++ ++.....+|..+ +..++--|+.+|.+.-. .++ .+..+ ..
T Consensus 20 sd~~~r~~A~~~L~~~q~-sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~l-r~ 88 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRS-SST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMI-RD 88 (980)
T ss_dssp SCHHHHHHHHHHHHHHHH-STT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHHc-Chh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHH-HH
Confidence 378888888888887765 433 344556667553 67888888888865533 233 33333 23
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccCCH-HHHHHHHHHHHHhcCC---CC
Q 039015 462 GGLDFIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDGTD-RSKKNALVAIFGLLMH---SG 537 (685)
Q Consensus 462 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~---~~ 537 (685)
..+..+...-..+...-++...+.+|..+....-. ..=++.++.|+.++..++. ......+.+|..|+.. ..
T Consensus 89 ~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p----~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~ 164 (980)
T 3ibv_A 89 SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP----SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSL 164 (980)
T ss_dssp HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc----ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcc
Confidence 33444433110122456777778888777654310 0225688889998876554 3444555566544311 00
Q ss_pred --------c-----HHHHHhcC---ChHHHHHHhcc---CCChhHHHHHHHHHHHHhcChhcHHHHHhcCChHHHHHHhh
Q 039015 538 --------N-----HWRFLAAG---AVPLLLNLLTS---SDSEELITDSLAVLATLAEKLDGTIAILHHGALDMIMKILD 598 (685)
Q Consensus 538 --------n-----~~~iv~~G---~v~~Lv~lL~~---~~~~~~~~~al~~L~~La~~~~~~~~i~~~g~v~~Lv~lL~ 598 (685)
. +..+.+.. +++..+.+|.. ..++.+...++.+|...... .....+.+.+-++.+..++.
T Consensus 165 ~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w-i~~~~i~~~~ll~~l~~~L~ 243 (980)
T 3ibv_A 165 VLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW-ININLIVNEPCMNLLYSFLQ 243 (980)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-SCHHHHHCHHHHHHHHHHTT
T ss_pred cccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh-cCHHhhhcchHHHHHHHHcC
Confidence 1 12222211 14444445522 35677888888888888774 23344555445677777664
Q ss_pred cCCChhHHHHHHHHHHHHhccCc
Q 039015 599 SCTSRAGKEYCVSLLLALCINGG 621 (685)
Q Consensus 599 ~~~s~~~~e~a~~~L~~L~~~~~ 621 (685)
++..++.|+.+|..+...+.
T Consensus 244 ---~~~~r~~A~ecL~ei~~k~~ 263 (980)
T 3ibv_A 244 ---IEELRCAACETMTEIVNKKM 263 (980)
T ss_dssp ---SHHHHHHHHHHHHHHHHSCC
T ss_pred ---ChHHHHHHHHHHHHHHHcCC
Confidence 57899999999999887653
No 216
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=49.80 E-value=17 Score=30.10 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=40.2
Q ss_pred CCCCCccCcCccccCCCceecc-Cc-----ccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 276 LTPDDFTCPISLEIMKDPVTLS-TG-----HTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~~-cg-----htfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
=+++.++|||+++.-..-|.+. .+ .-|+...+.+.... +..=|.+|.+++..
T Consensus 23 C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~-~~~HPLSREpit~s 80 (102)
T 2kkx_A 23 CPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGE-GLPHPLTREPITAS 80 (102)
T ss_dssp CCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHH-TCCCTTTCCCCCTT
T ss_pred CCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhc-CCCCCCccCCCCHh
Confidence 3567899999999999999882 22 24899999999887 44458888888754
No 217
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=49.03 E-value=6.3 Score=32.46 Aligned_cols=13 Identities=23% Similarity=0.790 Sum_probs=11.7
Q ss_pred cccHHHHHHHHHc
Q 039015 301 TYDRASILKWFRA 313 (685)
Q Consensus 301 tfcr~ci~~~~~~ 313 (685)
.|||.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999975
No 218
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=48.81 E-value=1.5e+02 Score=29.84 Aligned_cols=135 Identities=12% Similarity=0.161 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHhhccccCcchhHHHHh--cCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch-hHHHHhhc-CCCcHHH
Q 039015 434 DSSTQENAIAALLNLSKHCKSKSMVVE--SGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE-EYRKLIGE-NPEAIPA 509 (685)
Q Consensus 434 ~~~~~~~A~~aL~nLs~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~-~~g~i~~ 509 (685)
+.+.-+.|+.-|-.+|.+-.-...|++ ...+..|+ +.... ....++.|+.++..--.++ +.-..|.. .+..+..
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~ 118 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSK 118 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHH
Confidence 455678888889999988777666764 34455555 22333 6788999999998766655 44443332 3466666
Q ss_pred HHHHhcc-------CCHHHHHHHHHHHHHhcCCCCcHHHHHhcCChHHHHHHhccCC--ChhHHHHHHHHHHHHh
Q 039015 510 LVDMVRD-------GTDRSKKNALVAIFGLLMHSGNHWRFLAAGAVPLLLNLLTSSD--SEELITDSLAVLATLA 575 (685)
Q Consensus 510 Lv~lL~~-------~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~--~~~~~~~al~~L~~La 575 (685)
++.-|.. ...-..|.-+.+|..|..+... + ...++..|.+++. .. +..++..++.++..+-
T Consensus 119 lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~-~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 119 IMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYE-RNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHH-HTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHc-cCCCCHHHHHHHHHHHHHHc
Confidence 6655543 2345566778888888877521 1 1446788888884 34 6788888888877664
No 219
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=48.25 E-value=6.6 Score=32.29 Aligned_cols=13 Identities=23% Similarity=0.659 Sum_probs=11.6
Q ss_pred cccHHHHHHHHHc
Q 039015 301 TYDRASILKWFRA 313 (685)
Q Consensus 301 tfcr~ci~~~~~~ 313 (685)
.|||.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999984
No 220
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=46.47 E-value=74 Score=33.69 Aligned_cols=129 Identities=14% Similarity=0.137 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHH-HhhcCCCHHHHHHHHHHhhccccCcch-hHHHHhcCcHHHHHHHhc
Q 039015 395 EKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLL-KLLSSKDSSTQENAIAALLNLSKHCKS-KSMVVESGGLDFIVDMVK 472 (685)
Q Consensus 395 ~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv-~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g~i~~Lv~lL~ 472 (685)
.+.-++..||.++...+.. +.+..++ ..+.+..+..+-.++++|+||..++.. +..+........+++.+.
T Consensus 242 ~~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~ 314 (425)
T 3pst_A 242 IKTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETID 314 (425)
T ss_dssp CCHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHH
Confidence 3667888888887644322 2233333 234456788999999999999999984 555544334566666553
Q ss_pred CC-------CCHHHHHHHHHHHHHhcCchhH-HHHhhcCCCcHHHHHHHhc---------cCCHHHHHHHHHHHHHhcC
Q 039015 473 KG-------LKVEARQHAAATLFYIASIEEY-RKLIGENPEAIPALVDMVR---------DGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 473 ~~-------~~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~lL~---------~~~~~~~~~A~~aL~nLs~ 534 (685)
.. .+..++..++.+++|+|..... +. . ......+++.+. ..+.++.-.++.||.+|..
T Consensus 315 ~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~-~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 315 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D-LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C-TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h-HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 21 1356788888888999874421 11 1 334556666665 2477888889999999975
No 221
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.85 E-value=22 Score=34.31 Aligned_cols=71 Identities=8% Similarity=0.033 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCc-hhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccc
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSSIF-NRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLS 449 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~-~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs 449 (685)
.++..|.+.|.+.++.++..|+..|..+.++... -...|....++..|+.+++. .+..+++.++..|...+
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999874432 35556666777788888755 56788888888887665
No 222
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=45.77 E-value=43 Score=29.94 Aligned_cols=72 Identities=11% Similarity=0.145 Sum_probs=55.0
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhc------CChHHHHHHHHHHHHHHHh
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQ------GSSRASKKASALIRILHEF 663 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~------g~~~~k~~A~~lL~~l~~~ 663 (685)
+..|.+-|+++ ++.++-.|+.+|-.+..++|......+.. ..++.-|+.++.. .+..+++++..++..-...
T Consensus 40 ~rai~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 40 PWLLAHKIQSP-QEKEALYALTVLEMCMNHCGEKFHSEVAK-FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45566666777 99999999999999999988887777765 5677778888764 3567888887777765543
No 223
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=44.49 E-value=1.1e+02 Score=36.36 Aligned_cols=139 Identities=10% Similarity=0.057 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-----CCHHHHHHHHHHhhccccCcchhHHHHhcCcHH
Q 039015 391 GTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-----KDSSTQENAIAALLNLSKHCKSKSMVVESGGLD 465 (685)
Q Consensus 391 ~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-----~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~i~ 465 (685)
.+...+..|+.++..++......-..-.-...++.|+.+... +.+.++..+++++...+..-....... ..+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHH
Confidence 567888999999998885332211111111234444443322 223344457777776664322211121 34677
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhh-----cCCCcHHHHHH----HhccCCHHHHHHHHHHHHHhc
Q 039015 466 FIVDMVKKGLKVEARQHAAATLFYIASIEEYRKLIG-----ENPEAIPALVD----MVRDGTDRSKKNALVAIFGLL 533 (685)
Q Consensus 466 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~-----~~~g~i~~Lv~----lL~~~~~~~~~~A~~aL~nLs 533 (685)
.++..|... +..++..|+.++.+++... +..+. .....++.++. ++..-+.+.......++..+.
T Consensus 544 ~ll~~l~~~-~~~V~~~A~~al~~l~~~~--~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii 617 (1049)
T 3m1i_C 544 KLFEFMHET-HEGVQDMACDTFIKIVQKC--KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1049)
T ss_dssp HHHHHTTSS-CHHHHHHHHHHHHHHHHHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHHHH--HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 777788777 8999999999999998743 33332 10123444444 344434444444555555554
No 224
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=44.02 E-value=3.8 Score=32.36 Aligned_cols=55 Identities=24% Similarity=0.224 Sum_probs=34.4
Q ss_pred ccCcCccccCCCceec----cCc----ccccHHHHHHHHHcCCCCCCCCCccccCCCCcccHH
Q 039015 281 FTCPISLEIMKDPVTL----STG----HTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLV 335 (685)
Q Consensus 281 ~~CpIc~~~m~dPv~~----~cg----htfcr~ci~~~~~~~~~~CP~c~~~l~~~~l~~n~~ 335 (685)
-.||||+..+...-.+ .-+ ---++.-..+-+.+=.+.||.|+..+.-+.+..+.+
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~Ea 71 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRREA 71 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTTTH
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChHHH
Confidence 5799999887743211 111 112455555555554678999999987776655543
No 225
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=43.34 E-value=70 Score=33.14 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHhhCCHHHHH-HhhcCCCHHHHHHHHHHhhccccCcch-hHHHHhcCcHHHHHHHhc-
Q 039015 396 KNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLL-KLLSSKDSSTQENAIAALLNLSKHCKS-KSMVVESGGLDFIVDMVK- 472 (685)
Q Consensus 396 ~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv-~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g~i~~Lv~lL~- 472 (685)
+.-++..||.++.+.+.. +.+..++ ..+.+..+..+-.++++++||-.+... +..+........+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 777888888888644322 2333333 234456688999999999999999984 555543223344455442
Q ss_pred ---CC---CCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhc---------cCCHHHHHHHHHHHHHhcC
Q 039015 473 ---KG---LKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVR---------DGTDRSKKNALVAIFGLLM 534 (685)
Q Consensus 473 ---~~---~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---------~~~~~~~~~A~~aL~nLs~ 534 (685)
.. .+..++..++.+++|+|..... .. .. ......+++++. ..+.++.-.++.||.+|..
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~-~~-~~-~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTK-GN-SD-LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHH-TC-SC-TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhc-cc-ch-HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 11 1356788888888999874421 00 11 334566777665 2477888899999999974
No 226
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=42.58 E-value=52 Score=30.17 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=55.5
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhc------CChHHHHHHHHHHHHHHHh
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQ------GSSRASKKASALIRILHEF 663 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~------g~~~~k~~A~~lL~~l~~~ 663 (685)
+..|.+-|+++ ++.++-.|+.+|-.+..+++......+.. ..++.-|+.++.. .+..+++++..++..-...
T Consensus 52 ~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 52 VRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGK-FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45566667777 99999999999999999988877766665 5677788888863 2567888888888776543
No 227
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=42.26 E-value=31 Score=33.03 Aligned_cols=71 Identities=6% Similarity=-0.006 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-CchhhHHHhhCCHHHHHHhhcC-CCHHHHHHHHHHhhccc
Q 039015 379 LLANFISDRLLEGTSEEKNKVAYEVRLLTKSS-IFNRSCLVEVGCIPSLLKLLSS-KDSSTQENAIAALLNLS 449 (685)
Q Consensus 379 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~ip~Lv~lL~s-~~~~~~~~A~~aL~nLs 449 (685)
.++..|.++|.++++.++..|+..|..+.++. ..-+..++....+..|+.++.+ .+..+++.++..+..-+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 45778889999999999999999999998854 2244566666788888888764 46778888877765544
No 228
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=41.44 E-value=76 Score=29.25 Aligned_cols=55 Identities=9% Similarity=0.064 Sum_probs=31.7
Q ss_pred ccCcHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 039015 143 IDVSSEVKELVDLVMRQARKAIFETDPDDKRVLNDVIRILGRFEDGIRPDKSEVKRVLD 201 (685)
Q Consensus 143 ~~~s~~v~e~v~~l~~q~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 201 (685)
+++++|-++++..++++.+......-..-.....++..++. ..+||.+.++.+++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~----a~~~DeakI~aL~~ 120 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLT----ASSPDTAKINAVAK 120 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----SSSCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCCHHHHHHHHH
Confidence 67999999999999988875433221111222333444332 35688887775543
No 229
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=40.44 E-value=69 Score=28.65 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=54.9
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhc------CChHHHHHHHHHHHHHHHh
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQ------GSSRASKKASALIRILHEF 663 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~------g~~~~k~~A~~lL~~l~~~ 663 (685)
+..|.+-+.++ ++.+.-.|+.+|-.+..++|......+.. ..++.-|+.++.. .+..+++++..++..-...
T Consensus 50 ~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG~~fh~eias-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 50 TRLLAHKIQSP-QEWEAIQALTVLETCMKSCGKRFHDEVGK-FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCCHHHHHHHTS-HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 45666666676 99999999999999999998887776665 4577778888863 4677888887777765543
No 230
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=40.38 E-value=19 Score=31.10 Aligned_cols=49 Identities=16% Similarity=0.372 Sum_probs=38.4
Q ss_pred CCCccCcCccccCCC---ceeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 278 PDDFTCPISLEIMKD---PVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 278 ~~~~~CpIc~~~m~d---Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
++-|.|..|...+.+ +....=|..||..|..+.+.. ...|+.|++.+..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 567999999999853 556678899999998876643 2379999998864
No 231
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=40.12 E-value=2.8e+02 Score=33.10 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC-------CCHHHHHHHHHHhhccccCc
Q 039015 380 LANFISDRLLEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS-------KDSSTQENAIAALLNLSKHC 452 (685)
Q Consensus 380 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s-------~~~~~~~~A~~aL~nLs~~~ 452 (685)
....|.+.+.+++.+.+.-++++|.|+.. + +.++.|..++.. ....++..|+++|.+++...
T Consensus 441 i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~ 509 (1056)
T 1lsh_A 441 LHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD 509 (1056)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc
Confidence 45666777788888888899999998863 2 357788888742 23468889999999998543
Q ss_pred chhHHHHhcCcHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc-CCHHHHHHHHHHHH
Q 039015 453 KSKSMVVESGGLDFIVDMVK-KGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRD-GTDRSKKNALVAIF 530 (685)
Q Consensus 453 ~~k~~i~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~ 530 (685)
.. -+-+.+..++. .+.+.|+|..|..+|+.-.-.. ..+..+...+.. .+.++.......|.
T Consensus 510 p~-------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~----------~~l~~ia~~l~~E~~~QV~sfv~S~l~ 572 (1056)
T 1lsh_A 510 PR-------KVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSV----------ALVSMVAVRLRREPNLQVASFVYSQMR 572 (1056)
T ss_dssp HH-------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCH----------HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred hH-------HHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcCH----------HHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 21 12344566663 3348899998888876532111 134445555544 45677777777888
Q ss_pred HhcCCCC
Q 039015 531 GLLMHSG 537 (685)
Q Consensus 531 nLs~~~~ 537 (685)
+|+....
T Consensus 573 sla~s~~ 579 (1056)
T 1lsh_A 573 SLSRSSN 579 (1056)
T ss_dssp HHTTCCS
T ss_pred HHHhcCC
Confidence 8875543
No 232
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=40.08 E-value=8.2 Score=31.73 Aligned_cols=41 Identities=22% Similarity=0.456 Sum_probs=26.8
Q ss_pred CccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
+..||.|...|.. .-|+.+|..|=..+ .. ...||.|+++|.
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~f-~~-~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEFI-EM-KALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCEE-EE-EEECTTTCSBCE
T ss_pred cccCccCCCccee----cCCEEECccccchh-hc-cccCcchhhHHH
Confidence 3899999988763 23344477663221 11 457999999885
No 233
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=39.23 E-value=14 Score=31.80 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=37.2
Q ss_pred CCCccCcCccccCCC-ceeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 278 PDDFTCPISLEIMKD-PVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 278 ~~~~~CpIc~~~m~d-Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
++-|.|..|...+.+ +....-|..||..|..+.+ ...|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 456999999998876 4455678999999986643 4679999998875
No 234
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=38.25 E-value=12 Score=28.10 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=29.2
Q ss_pred hhHHhHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhc
Q 039015 64 NLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCT 105 (685)
Q Consensus 64 lL~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~ 105 (685)
-|..++||+...-.|--.-...+.+-|..-+..|+.|+..|.
T Consensus 15 ~LL~VIeEmgkdIrpTYaGsk~~~ERLkR~I~hAr~LVrECl 56 (65)
T 2kw6_A 15 ELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECL 56 (65)
T ss_dssp HHHHHHHHHTTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 456678888621111111235688999999999999999997
No 235
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=36.69 E-value=9.7 Score=23.88 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=10.5
Q ss_pred CCccCcCccccCCCc
Q 039015 279 DDFTCPISLEIMKDP 293 (685)
Q Consensus 279 ~~~~CpIc~~~m~dP 293 (685)
..|.||+|...|-|+
T Consensus 2 ~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCEECTTSSCEESSH
T ss_pred CcccCccccccCcCh
Confidence 357777777777765
No 236
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=36.10 E-value=63 Score=29.13 Aligned_cols=72 Identities=8% Similarity=0.056 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcC-CchhhHHHhhCCHHH-HHHhhcC---CCHHHHHHHHHHhhccc
Q 039015 378 KLLANFISDRLL-EGTSEEKNKVAYEVRLLTKSS-IFNRSCLVEVGCIPS-LLKLLSS---KDSSTQENAIAALLNLS 449 (685)
Q Consensus 378 ~~~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~ip~-Lv~lL~s---~~~~~~~~A~~aL~nLs 449 (685)
+.++..|.++|+ ++++.++..|+..|..+.++. ..-+..+....++.. |++++.. .+..+++.++..+..-+
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 345788899997 589999999999999998854 334556677778887 7888743 34578888888776654
No 237
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=35.49 E-value=9.6 Score=35.68 Aligned_cols=49 Identities=14% Similarity=0.347 Sum_probs=37.9
Q ss_pred CCCccCcCccccCCC---ceeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 278 PDDFTCPISLEIMKD---PVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 278 ~~~~~CpIc~~~m~d---Pv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
++-|.|..|...+.+ +....-|..||..|..+.+.. ...|+.|++.+..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 457999999998875 666678899999998776642 2269999988864
No 238
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=33.50 E-value=36 Score=30.99 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=36.9
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
++-|.|..|...+.+--...=|..||..|..+-+. ..|..|+..+...
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPT 78 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCC
Confidence 46799999999888655556788999999877654 4688888877543
No 239
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.86 E-value=68 Score=30.79 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=54.9
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhh
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSRASKKASALIRILHEFY 664 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~k~~A~~lL~~l~~~~ 664 (685)
+..|.+-|.++ ++.++-.|+.+|-.+..+.|......+.. ..++..|..++... +..+++++..++.......
T Consensus 47 ~ral~krl~~~-n~~v~l~aL~LLe~~vkNcG~~f~~eias-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 47 VNSIKKKVNDK-NPHVALYALEVMESVVKNCGQTVHDEVAN-KQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCHHHHHHHSS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcchHHHHhhcc-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 45566666676 99999999999999999888877666655 45667777777654 5678889888887766543
No 240
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=32.80 E-value=29 Score=32.03 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=33.0
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCC
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSK 328 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~ 328 (685)
++-|.|..|...+.+.-...=|..||..|..+-| ...|..|++.+...
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCCC
Confidence 3558888888777654444567788888865543 35788888877643
No 241
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=32.25 E-value=51 Score=30.21 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=18.3
Q ss_pred CCCccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 278 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
+..+.|++|+.+... .-...||.|+.+-.
T Consensus 136 ~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 136 KKVYICPICGYTAVD--------------------EAPEYCPVCGAPKE 164 (170)
T ss_dssp SCEEECTTTCCEEES--------------------CCCSBCTTTCCBGG
T ss_pred CCeeEeCCCCCeeCC--------------------CCCCCCCCCCCCHH
Confidence 345778877665541 12458999987543
No 242
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=31.79 E-value=3.2e+02 Score=27.50 Aligned_cols=145 Identities=8% Similarity=-0.014 Sum_probs=91.3
Q ss_pred HHHHHHhcCC------CHHHHHHHHHHHHHHhhcCCchhhHHHhh--CCHHHHHHhhcCCCHHHHHHHHHHhhccccCcc
Q 039015 382 NFISDRLLEG------TSEEKNKVAYEVRLLTKSSIFNRSCLVEV--GCIPSLLKLLSSKDSSTQENAIAALLNLSKHCK 453 (685)
Q Consensus 382 ~~Lv~~L~s~------~~~~~~~a~~~L~~La~~~~~~r~~i~~~--G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~ 453 (685)
..+...++++ +.+.-..|+..|-.++- +..+=..|++. ..+..|+ +..+..+.+++.|.++|...-.+++
T Consensus 25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 3344555555 44456788888888884 66666667653 3333333 3344677899999999987776664
Q ss_pred h-hHHHHh--cCcHHHHHHHhcC------CCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhccC--CHHHH
Q 039015 454 S-KSMVVE--SGGLDFIVDMVKK------GLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRDG--TDRSK 522 (685)
Q Consensus 454 ~-k~~i~~--~g~i~~Lv~lL~~------~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~ 522 (685)
. -..|.+ ...+..+..-|.. +........-+++|-.|..++. .+ . ..++..|.+++..+ ++.++
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~-~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-P-IYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC----CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-h-hccHHHHHHHHccCCCCHHHH
Confidence 4 444442 4556665554433 1144556677788888877751 12 1 34678888888766 77888
Q ss_pred HHHHHHHHHhc
Q 039015 523 KNALVAIFGLL 533 (685)
Q Consensus 523 ~~A~~aL~nLs 533 (685)
..++..+..+-
T Consensus 178 ~Kvl~li~d~f 188 (315)
T 3qml_C 178 IKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 87777766554
No 243
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.76 E-value=57 Score=24.57 Aligned_cols=36 Identities=8% Similarity=0.161 Sum_probs=27.1
Q ss_pred CCCccCcCccccCCCc-eeccCcccccHHHHHHHHHc
Q 039015 278 PDDFTCPISLEIMKDP-VTLSTGHTYDRASILKWFRA 313 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dP-v~~~cghtfcr~ci~~~~~~ 313 (685)
++-|.|..|...+.+. ....-|..||..|..+.|..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 4568999999888653 44456788999998888764
No 244
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=30.88 E-value=3e+02 Score=24.87 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=54.1
Q ss_pred HHHHHHHHhhHHhHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhccCcchhHhHHhhh--HHHHHHHHHHHHHHH
Q 039015 56 LKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCTREGARLWMLMKSD--RVSNQLRLFIRAIGT 133 (685)
Q Consensus 56 ~~l~r~l~lL~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~--~i~~~f~~~~~~l~~ 133 (685)
++..++..+|..-++||...+. . |.--..|+.-+..|..+..+.+.+. ..|-++.++ .+...+..+.+.+..
T Consensus 8 ~e~~~~~d~L~~ql~El~~~~l-~-~gE~eeLe~e~~rL~nae~l~~~~~----~a~~~L~~~e~~~~~~L~~a~~~L~~ 81 (175)
T 4abx_A 8 RERARQIDLLAFQVQEISEVSP-D-PGEEEGLNTELSRLSNLHTIAQAAA----GGVELLSDGDLNAAGLIGEAVRALNA 81 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-C-TTHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-C-CChHHHHHHHHHHHHCHHHHHHHHH----HHHHHHhCCcchHHHHHHHHHHHHHH
Confidence 4667899999999999986663 2 3445677788888888888888887 445555543 677787777777776
Q ss_pred H
Q 039015 134 A 134 (685)
Q Consensus 134 ~ 134 (685)
.
T Consensus 82 l 82 (175)
T 4abx_A 82 G 82 (175)
T ss_dssp H
T ss_pred H
Confidence 4
No 245
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=30.46 E-value=59 Score=26.03 Aligned_cols=36 Identities=6% Similarity=0.099 Sum_probs=27.0
Q ss_pred CCCCCCccCcCccccCCCceec--cCcccccHHHHHHH
Q 039015 275 GLTPDDFTCPISLEIMKDPVTL--STGHTYDRASILKW 310 (685)
Q Consensus 275 ~~~~~~~~CpIc~~~m~dPv~~--~cghtfcr~ci~~~ 310 (685)
..++.+-.|+||...-.+-..- -|+-.|...|+++-
T Consensus 10 e~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCccccccccceeccccccccccHhhcccc
Confidence 3678899999998655443322 48999999999885
No 246
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=29.73 E-value=2.8e+02 Score=33.59 Aligned_cols=178 Identities=12% Similarity=0.097 Sum_probs=99.8
Q ss_pred cCCCHHHHHHHHHHHHHHhhc-----CCchhhHHHhhCCHHHHHHhhcC---CCHHHHHHHHHHhhccccCc-chhHHHH
Q 039015 389 LEGTSEEKNKVAYEVRLLTKS-----SIFNRSCLVEVGCIPSLLKLLSS---KDSSTQENAIAALLNLSKHC-KSKSMVV 459 (685)
Q Consensus 389 ~s~~~~~~~~a~~~L~~La~~-----~~~~r~~i~~~G~ip~Lv~lL~s---~~~~~~~~A~~aL~nLs~~~-~~k~~i~ 459 (685)
.+.+..+|.-|+..|++..+. +++.|..|.+ ..+..+...-.. ....++.....++..++..+ ..+
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~---- 131 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH---- 131 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----
Confidence 355778888888888887643 2233333332 233333332111 34677787888887777553 111
Q ss_pred hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCch------------hHHHHhhcC-CCcHHHHHHHhcc----------
Q 039015 460 ESGGLDFIVDMVKKGLKVEARQHAAATLFYIASIE------------EYRKLIGEN-PEAIPALVDMVRD---------- 516 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~------------~~~~~i~~~-~g~i~~Lv~lL~~---------- 516 (685)
=.+.++.|+..++.+ ...++.+..+|..|+..- +.+..+... ..+++.+..++..
T Consensus 132 Wp~ll~~L~~~~~~~--~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~ 209 (1204)
T 3a6p_A 132 WPDMLIELDTLSKQG--ETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKT 209 (1204)
T ss_dssp CTTHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 146788888888764 556778888888886431 111122220 1234444444432
Q ss_pred ---------CCHHHHHHHHHHHHHhcCCCCcHHHHHhcC--ChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 039015 517 ---------GTDRSKKNALVAIFGLLMHSGNHWRFLAAG--AVPLLLNLLTSSDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 517 ---------~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G--~v~~Lv~lL~~~~~~~~~~~al~~L~~La~~ 577 (685)
++......++.++.+....-.. ..+.+.. .++.+..++ . ++.++..|+.+|..++..
T Consensus 210 ~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l-~--~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 210 DTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLL-N--EQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGG-G--CTTTHHHHHHHHHHHHTC
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHc-C--CHHHHHHHHHHHHHHHhC
Confidence 1123455666666655443332 2223332 566666666 2 467888899999988864
No 247
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.15 E-value=1.3e+02 Score=25.65 Aligned_cols=62 Identities=13% Similarity=0.032 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhHHhHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 039015 28 TLLISLIDLAHDICTYKSEFFSTNKRNALKAIRQVHNLLIFLEELRVESADIPGSLVISLSELHLTFQR 96 (685)
Q Consensus 28 ~l~~~l~~l~~~i~~~~~~~~~~~k~~~~~l~r~l~lL~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ 96 (685)
+++..+....+++...-.. +..|+-+.+..+|+..| |+-++..+ +++.++..|-+|-.+|+.
T Consensus 13 ~~i~~l~~~l~~~l~~~~~--~~~k~~~~D~~KRL~~L---fdkLn~~~--Ls~~v~~~L~~l~~al~~ 74 (118)
T 2yru_A 13 TLIEDVLRPLEQALEDCHG--HTKKQVCDDISRRLALL---REQWAGGK--LSIPVKKRMALLVQELLH 74 (118)
T ss_dssp CCHHHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHH---HHHHHHTC--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHH---HHHHhcCC--CCHHHHHHHHHHHHHHHc
Confidence 4444444444444331111 24466688998888765 77787555 588899999999888874
No 248
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=28.78 E-value=18 Score=25.52 Aligned_cols=13 Identities=38% Similarity=0.851 Sum_probs=11.5
Q ss_pred CCCCCccCcCccc
Q 039015 276 LTPDDFTCPISLE 288 (685)
Q Consensus 276 ~~~~~~~CpIc~~ 288 (685)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 6899999999985
No 249
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.39 E-value=1.2e+02 Score=28.86 Aligned_cols=72 Identities=18% Similarity=0.155 Sum_probs=53.6
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHHHh
Q 039015 590 LDMIMKILDSCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGSLYSLLSQG-SSRASKKASALIRILHEF 663 (685)
Q Consensus 590 v~~Lv~lL~~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~k~~A~~lL~~l~~~ 663 (685)
+..|.+-|.++ ++.++..|+.+|-.+..+.+......+.. ...+.-|..++.+. +..+++++..+++.-...
T Consensus 44 ~r~l~krl~~~-n~~~~l~aL~Lle~~vkNcG~~f~~eva~-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 44 FAAIKKKMNSP-NPHSSCYSLLVLESIVKNCGAPVHEEVFT-KENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHSS-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCHHHHHHHHh-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 44566656677 99999999999999999988777666654 45777788887764 567888887777766543
No 250
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=28.33 E-value=5.5e+02 Score=30.58 Aligned_cols=176 Identities=11% Similarity=0.033 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHHHHHhhcC-----CchhhHHHhhCCHHHHHHhhcC-----CCHHHHHHHHHHhhccccCc--chhHH
Q 039015 390 EGTSEEKNKVAYEVRLLTKSS-----IFNRSCLVEVGCIPSLLKLLSS-----KDSSTQENAIAALLNLSKHC--KSKSM 457 (685)
Q Consensus 390 s~~~~~~~~a~~~L~~La~~~-----~~~r~~i~~~G~ip~Lv~lL~s-----~~~~~~~~A~~aL~nLs~~~--~~k~~ 457 (685)
+.++++|.-|+..|++..+.. ++.|..+ ....+..+...-.+ .++.++.+...++..+...+ ++
T Consensus 72 s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~--- 147 (1073)
T 3gjx_A 72 SQNMNTKYYGLQILENVIKTRWKILPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH--- 147 (1073)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT---
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh---
Confidence 457788888888888776532 2222222 22334444443222 24556666666666666443 11
Q ss_pred HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc--h------------hHHHHhhcC-CCcHHHHHHHhc-cCCHHH
Q 039015 458 VVESGGLDFIVDMVKKGLKVEARQHAAATLFYIASI--E------------EYRKLIGEN-PEAIPALVDMVR-DGTDRS 521 (685)
Q Consensus 458 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~------------~~~~~i~~~-~g~i~~Lv~lL~-~~~~~~ 521 (685)
=.+.++-++..++.+ .........+|..|+.. + ..+..+... +.+++.+..+|. ..++..
T Consensus 148 --Wp~fi~dLv~~~~~~--~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~l 223 (1073)
T 3gjx_A 148 --WPTFISDIVGASRTS--ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPL 223 (1073)
T ss_dssp --CTTHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHH
T ss_pred --ccHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 145677777777543 45566777777777543 0 123344431 123333334443 346777
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHhcCChHHH-HHHhccCCChhHHHHHHHHHHHHhcC
Q 039015 522 KKNALVAIFGLLMHSGNHWRFLAAGAVPLL-LNLLTSSDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 522 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~L-v~lL~~~~~~~~~~~al~~L~~La~~ 577 (685)
...++.+|......-+. ..++..+.++.| ..+| .++.+++.|+.+|..+...
T Consensus 224 v~~~L~~L~~~~sWI~i-~~i~~~~ll~~L~~~~L---~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 224 VHATLETLLRFLNWIPL-GYIFETKLISTLIYKFL---NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHHHTS---SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCH-HHhccchHHHHHHHHhc---CChHHHHHHHHHHHHHHhc
Confidence 78888999988876543 456777888877 4666 4678999999999998763
No 251
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=27.24 E-value=25 Score=26.76 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=27.3
Q ss_pred hHHhHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhc
Q 039015 65 LLIFLEELRVESADIPGSLVISLSELHLTFQRIRYLLEDCT 105 (685)
Q Consensus 65 L~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~ 105 (685)
|..++||+...-.|--.-...+.+-|..-+..|+.|+..|.
T Consensus 20 LL~vIeEmgkdirPTyagsks~~ERLkRgI~hAr~LVRECl 60 (69)
T 2m1l_A 20 LLSVIEEMGKEIRPTYAGSKSAMERLKRGIIHARALVRECL 60 (69)
T ss_dssp HHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccchhhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 44566777421111111225588999999999999999996
No 252
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=27.23 E-value=41 Score=25.86 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=33.9
Q ss_pred CCCccCcCccccCCC-ceeccCcccccH-HHHHHHHHcCCCCCCCCCcccc
Q 039015 278 PDDFTCPISLEIMKD-PVTLSTGHTYDR-ASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 278 ~~~~~CpIc~~~m~d-Pv~~~cghtfcr-~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
++-|.|..|...+.+ +....=|..||. .|..+.| ...|..|+..+.
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f---~~~C~~C~~~~~ 72 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF---GPKGFGRGGAES 72 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS---SCCCSSCCCSSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh---CccCCCcCCcee
Confidence 457999999998886 455567889999 6986654 346888876543
No 253
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.20 E-value=79 Score=27.32 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=18.9
Q ss_pred ccCcCccccCCCce----eccCcccccHHHH
Q 039015 281 FTCPISLEIMKDPV----TLSTGHTYDRASI 307 (685)
Q Consensus 281 ~~CpIc~~~m~dPv----~~~cghtfcr~ci 307 (685)
-.|.+|...|.--. --.||+.||..|.
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs 100 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECS 100 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGS
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHh
Confidence 57999988775211 1268999998884
No 254
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=27.03 E-value=39 Score=25.75 Aligned_cols=45 Identities=7% Similarity=0.033 Sum_probs=32.4
Q ss_pred CCCccCcCccccCCCceec--cCcccccHHHHHHHHHc---CCCCCCCCCcc
Q 039015 278 PDDFTCPISLEIMKDPVTL--STGHTYDRASILKWFRA---GNSTCPKTGER 324 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~--~cghtfcr~ci~~~~~~---~~~~CP~c~~~ 324 (685)
...-.|.+|.+- +-++. .|...|...|+...+.. |...||.|...
T Consensus 10 ~~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 345679999863 33444 58899999999766653 56799999654
No 255
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.93 E-value=53 Score=24.67 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=23.6
Q ss_pred CCCccCcCccccCCCce-eccCcccccHHHHHHHHHc
Q 039015 278 PDDFTCPISLEIMKDPV-TLSTGHTYDRASILKWFRA 313 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv-~~~cghtfcr~ci~~~~~~ 313 (685)
++-|.|..|...+.+-- ...-|..||..|..+.+..
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCC
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCC
Confidence 45578888877776642 2246777888887766543
No 256
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.80 E-value=6.4 Score=40.11 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=33.3
Q ss_pred CCCccCcCccccCCCceecc----Cc--ccccHHHHHHHHHcCCCCCCCCCcc
Q 039015 278 PDDFTCPISLEIMKDPVTLS----TG--HTYDRASILKWFRAGNSTCPKTGER 324 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dPv~~~----cg--htfcr~ci~~~~~~~~~~CP~c~~~ 324 (685)
...-.||+|+....--++.. -| +-+|..|=..|--. ...||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-CcCCcCCCCC
Confidence 56789999998766555542 44 35688887777443 6789999886
No 257
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=24.37 E-value=28 Score=25.25 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=12.2
Q ss_pred CCCCCccCcCcccc
Q 039015 276 LTPDDFTCPISLEI 289 (685)
Q Consensus 276 ~~~~~~~CpIc~~~ 289 (685)
++|+++.||+|..-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 32 DLPDDWACPVCGAS 45 (52)
T ss_dssp SSCTTCCCSSSCCC
T ss_pred HCCCCCcCCCCCCc
Confidence 78999999999853
No 258
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=24.20 E-value=41 Score=25.08 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=27.6
Q ss_pred cCcCccccCCCceec---cCcccccHHHHHHHHHcCCCCCCCC
Q 039015 282 TCPISLEIMKDPVTL---STGHTYDRASILKWFRAGNSTCPKT 321 (685)
Q Consensus 282 ~CpIc~~~m~dPv~~---~cghtfcr~ci~~~~~~~~~~CP~c 321 (685)
.|--|...+.++... .|++.||..| ..++.+.-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 477777777665422 6899999999 34445556789987
No 259
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=24.01 E-value=25 Score=25.76 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=12.2
Q ss_pred CCCCCccCcCcccc
Q 039015 276 LTPDDFTCPISLEI 289 (685)
Q Consensus 276 ~~~~~~~CpIc~~~ 289 (685)
.+|+++.||+|..-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPDDWVCPLCGVG 45 (54)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCcCCCCc
Confidence 78999999999853
No 260
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=23.31 E-value=5.3e+02 Score=27.13 Aligned_cols=130 Identities=10% Similarity=0.080 Sum_probs=77.4
Q ss_pred HHHHHHHhhccccCcchhHHHHhcCcHHHHH-HHhcCCCCHHHHHHHHHHHHHhcCchhHHHHhhcCCCcHHHHHHHhcc
Q 039015 438 QENAIAALLNLSKHCKSKSMVVESGGLDFIV-DMVKKGLKVEARQHAAATLFYIASIEEYRKLIGENPEAIPALVDMVRD 516 (685)
Q Consensus 438 ~~~A~~aL~nLs~~~~~k~~i~~~g~i~~Lv-~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~ 516 (685)
+--++-+|.-+..+..... .+..++ ..+... .+..+..++.+|.||-.++.+...+.........++..+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~~------~l~~li~~~l~~~-~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchHH------HHHHHHHHhcCCC-ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 3446666666655554322 222222 334444 78889999999999998888544444313345677776532
Q ss_pred --------CCHHHHHHHHHHHHHhcCCCC-cHHHHHhcCChHHHHHHhc-----c---CCChhHHHHHHHHHHHHhcC
Q 039015 517 --------GTDRSKKNALVAIFGLLMHSG-NHWRFLAAGAVPLLLNLLT-----S---SDSEELITDSLAVLATLAEK 577 (685)
Q Consensus 517 --------~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~-----~---~~~~~~~~~al~~L~~La~~ 577 (685)
.+...+..+++.++|++...- .+. +...+..++..+. . ..+.+..-.++.+|.+|...
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 123566788889999985321 110 1223345555553 1 23677888888999998863
No 261
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=23.00 E-value=51 Score=29.30 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=30.5
Q ss_pred CCccCcCccccCCCceec--cCcccccHHHHHHHH----------HcCCCCCCCCC
Q 039015 279 DDFTCPISLEIMKDPVTL--STGHTYDRASILKWF----------RAGNSTCPKTG 322 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv~~--~cghtfcr~ci~~~~----------~~~~~~CP~c~ 322 (685)
.+..|.+|.+--. ++. .|-.+||..||..-+ ..+...||.|.
T Consensus 62 ~~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 62 MDEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp CBCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 3577888886543 222 688899999998644 24678999995
No 262
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.91 E-value=4.9 Score=32.12 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=22.5
Q ss_pred ccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 281 FTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 281 ~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
..||.|...|..- -++.+|..|=..+ .. ...||.|++++.
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~-~~-~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDF-SL-QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEE-EE-EEECSSSCSCCC
T ss_pred CCCCCCCCccccC----CCceECccccccC-CC-cccCcchhhHHH
Confidence 6788888776531 2233355552211 11 337888888875
No 263
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=22.87 E-value=27 Score=28.55 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=35.1
Q ss_pred CCCccCcCccccCCCc-eeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 278 PDDFTCPISLEIMKDP-VTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dP-v~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
++-|.|..|...+.+. ....-|..||..|..+.+ ...|..|++.+..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 78 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIVA 78 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCCS
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhc---CCccccCCCcccc
Confidence 4569999999988764 344678899999865432 4589999988863
No 264
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.12 E-value=48 Score=28.49 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=29.8
Q ss_pred CCccCcCccccCCCce-eccCcccccHHHHHHHHHcCCCCCCCCCcccc
Q 039015 279 DDFTCPISLEIMKDPV-TLSTGHTYDRASILKWFRAGNSTCPKTGERLQ 326 (685)
Q Consensus 279 ~~~~CpIc~~~m~dPv-~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~ 326 (685)
..-.|+-|.+...+.. +..-|..|...| +.|-.|+..|.
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccc---------cCcCcCCCccc
Confidence 3468999999888774 557787777755 67888988885
No 265
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=22.05 E-value=44 Score=23.29 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=23.2
Q ss_pred CccCcCccccCCCceeccCcccccHHHHHHHHH----cCCCCCCCCCccccC
Q 039015 280 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFR----AGNSTCPKTGERLQS 327 (685)
Q Consensus 280 ~~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~----~~~~~CP~c~~~l~~ 327 (685)
.|.|++|...+.... .+..... .....||.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNY-----------YLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHH-----------HHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCChH-----------HHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 488999988877642 2222222 235689999887653
No 266
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=21.85 E-value=71 Score=24.61 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=30.8
Q ss_pred CCCCCccCcCccccCCCceec--c--Cc-ccccHHHHHHHHH---cCCCCCCCCCccc
Q 039015 276 LTPDDFTCPISLEIMKDPVTL--S--TG-HTYDRASILKWFR---AGNSTCPKTGERL 325 (685)
Q Consensus 276 ~~~~~~~CpIc~~~m~dPv~~--~--cg-htfcr~ci~~~~~---~~~~~CP~c~~~l 325 (685)
+..+...| +|.+.-...++. . |. ..|...|+. +. .+...||.|...-
T Consensus 12 d~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CTTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 55667888 899876555544 3 44 467777774 22 2577899996643
No 267
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=21.64 E-value=96 Score=30.31 Aligned_cols=111 Identities=10% Similarity=0.009 Sum_probs=67.9
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcC--------CCHHHHHHHHHHhhccccCcch-hHHHH
Q 039015 389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSS--------KDSSTQENAIAALLNLSKHCKS-KSMVV 459 (685)
Q Consensus 389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s--------~~~~~~~~A~~aL~nLs~~~~~-k~~i~ 459 (685)
.+.++..+.-+++.+.|+-.+....|..+........++..+.+ .+..++..+.+.+.|+|..--+ +.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 35567788888999999876443356666554334444443321 3567888999999999864211 11
Q ss_pred hcCcHHHHHHHhcC----C----CCHHHHHHHHHHHHHhcCchhHHHHhhc
Q 039015 460 ESGGLDFIVDMVKK----G----LKVEARQHAAATLFYIASIEEYRKLIGE 502 (685)
Q Consensus 460 ~~g~i~~Lv~lL~~----~----~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~ 502 (685)
+......++..+.. . .+.|+...+..+|.+|...+.....+..
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~a~ 227 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFAN 227 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCCTT
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHHHHhc
Confidence 12334455555542 1 2678888888899888865544443433
No 268
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=21.56 E-value=3.8e+02 Score=31.56 Aligned_cols=67 Identities=9% Similarity=-0.017 Sum_probs=48.1
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCchhhHHHhhCCHHHHHHhhcCCCHHHHHHHHHHhhccccC---cchhHHHH
Q 039015 389 LEGTSEEKNKVAYEVRLLTKSSIFNRSCLVEVGCIPSLLKLLSSKDSSTQENAIAALLNLSKH---CKSKSMVV 459 (685)
Q Consensus 389 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~ip~Lv~lL~s~~~~~~~~A~~aL~nLs~~---~~~k~~i~ 459 (685)
.+++++.+..++.+|......-+ -..+++.+.++.+..+|.. ++++..|+.+|..+... ++++..++
T Consensus 203 ~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li 272 (980)
T 3ibv_A 203 NAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLL 272 (980)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 34677888899999988876332 3456677889999988865 78999999988777533 23444444
No 269
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=21.09 E-value=2.2e+02 Score=25.37 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=50.7
Q ss_pred hHHHHHHhh-cCCChhHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHH-HHHHHhc---CChHHHHHHHHHHHHHHHh
Q 039015 590 LDMIMKILD-SCTSRAGKEYCVSLLLALCINGGANVVALLVKSPSLMGS-LYSLLSQ---GSSRASKKASALIRILHEF 663 (685)
Q Consensus 590 v~~Lv~lL~-~~~s~~~~e~a~~~L~~L~~~~~~~~~~~l~~~~g~i~~-L~~Ll~~---g~~~~k~~A~~lL~~l~~~ 663 (685)
+..|.+-|+ .+ ++.++-.|+.+|-.+..++|......+.. ..++.- |+.++.. ....+++++..++..-...
T Consensus 55 ~ral~krl~~~~-n~~v~l~AL~LLd~~vkNcG~~fh~eva~-~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 55 LRAVKKRIVGNK-NFHEVMLALTVLETCVKNCGHRFHVLVAS-QDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhCHHHHHHHhh-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 455666565 35 88899999999999999988887776655 456665 6777642 2347888887777665553
No 270
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=21.02 E-value=36 Score=38.39 Aligned_cols=51 Identities=27% Similarity=0.467 Sum_probs=39.4
Q ss_pred CCCCCCccCcCccccCCCce--------e--ccCcccc--------------------cHHHHHHHHHc-------CCCC
Q 039015 275 GLTPDDFTCPISLEIMKDPV--------T--LSTGHTY--------------------DRASILKWFRA-------GNST 317 (685)
Q Consensus 275 ~~~~~~~~CpIc~~~m~dPv--------~--~~cghtf--------------------cr~ci~~~~~~-------~~~~ 317 (685)
..+|+--.|+-|..-|.||- + +.||..| |..|-.+|-+- +...
T Consensus 12 ~i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~a 91 (657)
T 3ttc_A 12 QIVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVA 91 (657)
T ss_dssp CCCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCC
T ss_pred ccCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCc
Confidence 36788899999999999974 1 2577655 99999888652 3457
Q ss_pred CCCCCccc
Q 039015 318 CPKTGERL 325 (685)
Q Consensus 318 CP~c~~~l 325 (685)
||.|+-.+
T Consensus 92 Cp~CGP~l 99 (657)
T 3ttc_A 92 CPECGPYL 99 (657)
T ss_dssp CTTTSCCE
T ss_pred CcccCccc
Confidence 99999877
No 271
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=20.91 E-value=34 Score=27.29 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=12.2
Q ss_pred CCCCCccCcCcccc
Q 039015 276 LTPDDFTCPISLEI 289 (685)
Q Consensus 276 ~~~~~~~CpIc~~~ 289 (685)
++|+++.||+|.--
T Consensus 56 dlPddW~CPvCga~ 69 (81)
T 2kn9_A 56 DIPDDWSCPDCGAA 69 (81)
T ss_dssp TSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 78999999999863
No 272
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=20.70 E-value=32 Score=24.94 Aligned_cols=13 Identities=38% Similarity=0.843 Sum_probs=11.8
Q ss_pred CCCCCccCcCccc
Q 039015 276 LTPDDFTCPISLE 288 (685)
Q Consensus 276 ~~~~~~~CpIc~~ 288 (685)
.+|+++.||+|..
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 7899999999985
No 273
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.69 E-value=50 Score=24.80 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=31.2
Q ss_pred ccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccCCCC
Q 039015 281 FTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKEL 330 (685)
Q Consensus 281 ~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~~~l 330 (685)
-.|.-|.+...+.++..-|.+|...| +.|-.|+..|.....
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~~f 46 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPEC---------FRCDLCQEVLADIGF 46 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTT---------SBCSSSCCBCSSSCC
T ss_pred CcCccCCCEecceEEEECcccccccC---------CEeCCCCCcCCCCcc
Confidence 47999999888877767777666544 679999998876544
No 274
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=20.59 E-value=21 Score=21.49 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=7.9
Q ss_pred CccCcCccccCC
Q 039015 280 DFTCPISLEIMK 291 (685)
Q Consensus 280 ~~~CpIc~~~m~ 291 (685)
...||+|.+.|-
T Consensus 6 ~vqcpvcqq~mp 17 (29)
T 3vhs_A 6 QVQCPVCQQMMP 17 (29)
T ss_dssp EEECTTTCCEEE
T ss_pred eeeChHHHHhCc
Confidence 356777777664
No 275
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.42 E-value=68 Score=25.53 Aligned_cols=38 Identities=11% Similarity=0.377 Sum_probs=21.0
Q ss_pred ccCcCccccCCCceeccCcccccHHHHHHHHHcCCCCCCCCCccccC
Q 039015 281 FTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQS 327 (685)
Q Consensus 281 ~~CpIc~~~m~dPv~~~cghtfcr~ci~~~~~~~~~~CP~c~~~l~~ 327 (685)
-.|+-|.+...+.++..-|..|...| +.|..|+..|..
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEE---------FNCAHCKNTMAY 63 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTT---------CBCSSSCCBCSS
T ss_pred CCCccCCCEecceEEEECCccccccC---------CccCCCCCCCCC
Confidence 35666666655555555555555433 456666665543
No 276
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.40 E-value=32 Score=25.24 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=12.1
Q ss_pred CCCCCccCcCcccc
Q 039015 276 LTPDDFTCPISLEI 289 (685)
Q Consensus 276 ~~~~~~~CpIc~~~ 289 (685)
++|+++.||+|..-
T Consensus 32 ~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 32 DIPADWVCPDCGVG 45 (55)
T ss_dssp GSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 68999999999853
No 277
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.21 E-value=55 Score=26.09 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=27.0
Q ss_pred CCCccCcCccccCCCc-eeccCcccccHHHHHHHHH
Q 039015 278 PDDFTCPISLEIMKDP-VTLSTGHTYDRASILKWFR 312 (685)
Q Consensus 278 ~~~~~CpIc~~~m~dP-v~~~cghtfcr~ci~~~~~ 312 (685)
++-|.|..|...+.+- ....-|..||..|..+.|.
T Consensus 49 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 84 (90)
T 2dar_A 49 PEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFA 84 (90)
T ss_dssp TTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTS
T ss_pred ccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcC
Confidence 4569999999988753 3446788999999877654
Done!