BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039016
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFS 71
L KGPWT EEDQK++ ++++G W L AK R GK CR RW N+L P++K+ ++
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQW-TLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 72 LQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRL 116
+E++ I + H +LGNRW+ IA LP RTDN +KN+WN+ +K+++
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 63 PDIKRGKFSLQEEQTIIQLHALLGNR-WSAIAAHLPKRTDNEIKNYWNTHL 112
PD+ +G ++ +E+Q +I+L G + W+ IA HL R + + W+ HL
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHL 53
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFS 71
L KGPWT EEDQ+++ ++++G W ++ AK R GK CR RW N+L P++K+ ++
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 72 LQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRL 116
+E++ I Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFS 71
L KGPWT EEDQ+++ ++++G W ++ AK R GK CR RW N+L P++K+ ++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 LQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRL 116
+E++ I Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFS 71
L KGPWT EEDQ+++ ++++G W ++ AK R GK CR RW N+L P++K+ ++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 LQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRL 116
+E++ I Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 64 DIKRGKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHL 112
++ +G ++ +E+Q +I+L G RWS IA HL R + + W+ HL
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFS 71
L KGPWT EEDQ+++ ++++G W + AK R GK CR RW N+L P++K+ ++
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDI-AKHLKGRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72 LQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRL 116
+E++ I Q H LGNRW+ IA LP RTDN +KN+WN+ +++++
Sbjct: 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 48 RCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKN 106
R C+ RW L P++ +G ++ +E+Q +I+ G RWS IA HL R + +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 107 YWNTHL 112
W+ HL
Sbjct: 68 RWHNHL 73
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 14 KGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQ 73
KGP+T ED + +++++G +W + + R K CR RW N+L P + + ++ +
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 74 EEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLT 117
E++TI + + LG++WS IA +P RTDN IKN WN+ + KR++
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 13 KKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSL 72
KK +TPEED+ L + QHG W+ + A R + CR RW NYL P I ++
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73 QEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNT 110
+E+ ++Q G +W+ IA P RTD IKN W T
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 66 KRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHL 112
K+ KF+ +E++ + + A G+ W IAA P R + ++ W +L
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 14 KGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQ 73
K +T EED KL + ++G W + ++ + R + CR RW NY+ P ++ +S +
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRI-SQLMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYW 108
E+ + Q +A G +W+ I+ L R+DN I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 38/52 (73%)
Query: 65 IKRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRL 116
+K+ ++ +E++ I Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 39/53 (73%)
Query: 64 DIKRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRL 116
++K+ ++ +E++ + Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPD 64
L KGPWT EEDQ+L+ ++++G W + AK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPE 52
Score = 34.7 bits (78), Expect = 0.091, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 67 RGKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHL 112
+G ++ +E+Q +I+L G RWS IA HL R + + W+ HL
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 52.0 bits (123), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPD 64
L KGPWT EEDQ+++ ++++G W + AK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPE 52
Score = 35.0 bits (79), Expect = 0.063, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 67 RGKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHL 112
+G ++ +E+Q +I+L G RWS IA HL R + + W+ HL
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 51.6 bits (122), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPD 64
L KGPWT EEDQ+++ ++++G W + AK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPE 52
Score = 35.4 bits (80), Expect = 0.052, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 67 RGKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHL 112
+G ++ +E+Q +I+L G RWS IA HL R + + W+ HL
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPD 64
L K WT EED+KL +EQ+G W+ + A R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPD 64
L K WT EED+KL +EQ+G W+ + A R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 14 KGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYL 61
K WT EED++L A + Q G W+ L A R + C+ RW+ L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFL-ASHFPNRTDQQCQYRWLRVL 54
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 69 KFSLQEEQTIIQLHALLGNR-WSAIAAHLPKRTDNEIKNYW 108
K++ +E++ + L G + W +A+H P RTD + + W
Sbjct: 10 KWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 34.3 bits (77), Expect = 0.099, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 69 KFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKP 128
K++++E++ Q A G RW+ I+ + RT ++K+Y + K ++ K G+D T
Sbjct: 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV-KCGLDKETPNQ 69
Query: 129 KT 130
KT
Sbjct: 70 KT 71
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 17 WTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFS 71
W ED+ L A + ++G W + A ++ K C+ RW +L P IK+ ++S
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRI-ASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1QW1|A Chain A, Solution Structure Of The C-Terminal Domain Of Dtxr
Residues 110-226
Length = 121
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 154 EAEARLVRESKLVSKPPPANH-PHDHQLGLGSSKAAAPAGR 193
E E RLV+ K VS+ P N P +LG+G+S AAAP R
Sbjct: 6 EVERRLVKVLKDVSRSPFGNPIPGLDELGVGNSDAAAPGTR 46
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 17 WTPEEDQKLLAFIEQHGHGSW 37
WT EED+KLL + ++G+GSW
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSW 191
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 17 WTPEEDQKLLAFIEQHGHGSW 37
WT EED+KLL + ++G+GSW
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSW 192
>pdb|1P92|A Chain A, Crystal Structure Of (H79a)dtxr
Length = 226
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 154 EAEARLVRESKLVSKPPPAN-HPHDHQLGLGSSKAAAPAGR 193
E E RLV+ K VS+ P N P +LG+G+S AAAP R
Sbjct: 111 EVERRLVKVLKDVSRSPFGNPIPGLDELGVGNSDAAAPGTR 151
>pdb|1DDN|A Chain A, Diphtheria Tox Repressor (C102d Mutant)TOX DNA OPERATOR
Complex
pdb|1DDN|B Chain B, Diphtheria Tox Repressor (C102d Mutant)TOX DNA OPERATOR
Complex
pdb|1DDN|C Chain C, Diphtheria Tox Repressor (C102d Mutant)TOX DNA OPERATOR
Complex
pdb|1DDN|D Chain D, Diphtheria Tox Repressor (C102d Mutant)TOX DNA OPERATOR
Complex
pdb|2TDX|A Chain A, Diphtheria Tox Repressor (C102d Mutant) Complexed With
Nickel
Length = 226
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 154 EAEARLVRESKLVSKPPPAN-HPHDHQLGLGSSKAAAPAGR 193
E E RLV+ K VS+ P N P +LG+G+S AAAP R
Sbjct: 111 EVERRLVKVLKDVSRSPFGNPIPGLDELGVGNSDAAAPGTR 151
>pdb|1C0W|A Chain A, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
pdb|1C0W|B Chain B, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
pdb|1C0W|C Chain C, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
pdb|1C0W|D Chain D, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
Length = 225
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 154 EAEARLVRESKLVSKPPPAN-HPHDHQLGLGSSKAAAPAGR 193
E E RLV+ K VS+ P N P +LG+G+S AAAP R
Sbjct: 110 EVERRLVKVLKDVSRSPFGNPIPGLDELGVGNSDAAAPGTR 150
>pdb|1DPR|A Chain A, Structures Of The Apo-And Metal Ion Activated Forms Of The
Diphtheria Tox Repressor From Corynebacterium
Diphtheriae
pdb|1DPR|B Chain B, Structures Of The Apo-And Metal Ion Activated Forms Of The
Diphtheria Tox Repressor From Corynebacterium
Diphtheriae
pdb|1BI2|A Chain A, Structure Of Apo-And Holo-Diphtheria Toxin Repressor
pdb|1BI2|B Chain B, Structure Of Apo-And Holo-Diphtheria Toxin Repressor
pdb|2DTR|A Chain A, Structure Of Diphtheria Toxin Repressor
Length = 226
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 154 EAEARLVRESKLVSKPPPAN-HPHDHQLGLGSSKAAAPAGR 193
E E RLV+ K VS+ P N P +LG+G+S AAAP R
Sbjct: 111 EVERRLVKVLKDVSRSPFGNPIPGLDELGVGNSDAAAPGTR 151
>pdb|2QQA|A Chain A, Crystal Structure Of Dtxr(E9a C102d) Complexed With
Nickel(Ii)
Length = 226
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 154 EAEARLVRESKLVSKPPPAN-HPHDHQLGLGSSKAAAPAGR 193
E E RLV+ K VS+ P N P +LG+G+S AAAP R
Sbjct: 111 EVERRLVKVLKDVSRSPFGNPIPGLDELGVGNSDAAAPGTR 151
>pdb|1BI3|A Chain A, Structure Of Apo-And Holo-Diphtheria Toxin Repressor
pdb|1BI3|B Chain B, Structure Of Apo-And Holo-Diphtheria Toxin Repressor
pdb|1BI0|A Chain A, Structure Of Apo-And Holo-Diphtheria Toxin Repressor
pdb|1BI1|A Chain A, Structure Of Apo-And Holo-Diphtheria Toxin Repressor
Length = 226
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 154 EAEARLVRESKLVSKPPPAN-HPHDHQLGLGSSKAAAPAGR 193
E E RLV+ K VS+ P N P +LG+G+S AAAP R
Sbjct: 111 EVERRLVKVLKDVSRSPFGNPIPGLDELGVGNSDAAAPGTR 151
>pdb|1G3Y|A Chain A, Arg80ala Dtxr
Length = 226
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 154 EAEARLVRESKLVSKPPPAN-HPHDHQLGLGSSKAAAPAGR 193
E E RLV+ K VS+ P N P +LG+G+S AAAP R
Sbjct: 111 EVERRLVKVLKDVSRSPFGNPIPGLDELGVGNSDAAAPGTR 151
>pdb|1G3S|A Chain A, Cys102ser Dtxr
pdb|1G3T|A Chain A, Cys102ser Dtxr
pdb|1G3T|B Chain B, Cys102ser Dtxr
pdb|1G3W|A Chain A, Cd-Cys102ser Dtxr
Length = 226
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 154 EAEARLVRESKLVSKPPPAN-HPHDHQLGLGSSKAAAPAGR 193
E E RLV+ K VS+ P N P +LG+G+S AAAP R
Sbjct: 111 EVERRLVKVLKDVSRSPFGNPIPGLDELGVGNSDAAAPGTR 151
>pdb|1FWZ|A Chain A, Glu20ala Dtxr
Length = 226
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 154 EAEARLVRESKLVSKPPPAN-HPHDHQLGLGSSKAAAPAGR 193
E E RLV+ K VS+ P N P +LG+G+S AAAP R
Sbjct: 111 EVERRLVKVLKDVSRSPFGNPIPGLDELGVGNSDAAAPGTR 151
>pdb|2QQB|A Chain A, Crystal Structure Of Dtxr(m10a C102d) Complexed With
Nickel(ii)
Length = 226
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 154 EAEARLVRESKLVSKPPPAN-HPHDHQLGLGSSKAAAPAGR 193
E E RLV+ K VS+ P N P +LG+G+S AAAP R
Sbjct: 111 EVERRLVKVLKDVSRSPFGNPIPGLDELGVGNSDAAAPGTR 151
>pdb|2QQ9|A Chain A, Crystal Structure Of Dtxr(D6a C102d) Complexed With
Nickel(Ii)
Length = 226
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 154 EAEARLVRESKLVSKPPPAN-HPHDHQLGLGSSKAAAPAGR 193
E E RLV+ K VS+ P N P +LG+G+S AAAP R
Sbjct: 111 EVERRLVKVLKDVSRSPFGNPIPGLDELGVGNSDAAAPGTR 151
>pdb|3GLX|A Chain A, Crystal Structure Analysis Of The Dtxr(E175k) Complexed
With Ni(Ii)
Length = 226
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 154 EAEARLVRESKLVSKPPPAN-HPHDHQLGLGSSKAAAPAGR 193
E E RLV+ K VS+ P N P +LG+G+S AA P R
Sbjct: 111 EVERRLVKVLKDVSRSPFGNPIPGLDELGVGNSDAAVPGTR 151
>pdb|4B4C|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Chd1
Length = 211
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 5 PCCEKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRAL 40
PC K W E+D LL I ++G+GSW +
Sbjct: 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMI 160
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 28.1 bits (61), Expect = 8.5, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 13 KKGPWTPEEDQKLLAFIEQHGHGSWRAL 40
KK WT EE + + A ++++G G+W A+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAI 37
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 28.1 bits (61), Expect = 8.8, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 13 KKGPWTPEEDQKLLAFIEQHGHGSWRAL 40
KK WT EE + + A ++++G G+W A+
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAI 28
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 28.1 bits (61), Expect = 8.8, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 13 KKGPWTPEEDQKLLAFIEQHGHGSWRAL 40
KK WT EE + + A ++++G G+W A+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAI 37
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 28.1 bits (61), Expect = 8.8, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 13 KKGPWTPEEDQKLLAFIEQHGHGSWRAL 40
KK WT EE + + A ++++G G+W A+
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAI 36
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 27.7 bits (60), Expect = 9.3, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 13 KKGPWTPEEDQKLLAFIEQHGHGSWRAL 40
KK WT EE + + A ++++G G+W A+
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAI 40
>pdb|1OUW|A Chain A, Crystal Structure Of Calystegia Sepium Agglutinin
pdb|1OUW|B Chain B, Crystal Structure Of Calystegia Sepium Agglutinin
pdb|1OUW|C Chain C, Crystal Structure Of Calystegia Sepium Agglutinin
pdb|1OUW|D Chain D, Crystal Structure Of Calystegia Sepium Agglutinin
Length = 152
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 207 VSGMFGAACRDNNLESPTSTLNFNEHVLLSGPPAVGLFSDNLVGNSIPCF-EKSGQIIE 264
+SG FG +N L S T T N H S N+VGN I F +SG ++
Sbjct: 85 ISGTFGIYLDNNVLRSITFTTNLKAHGPYGQKVGTPFSSANVVGNEIVGFLGRSGYYVD 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,666,366
Number of Sequences: 62578
Number of extensions: 478204
Number of successful extensions: 1091
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 56
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)