Query 039016
Match_columns 367
No_of_seqs 247 out of 1510
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:30:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03091 hypothetical protein; 100.0 2.8E-41 6E-46 338.0 14.9 164 1-164 1-164 (459)
2 PLN03212 Transcription repress 100.0 1.4E-38 3E-43 299.6 11.4 128 3-130 14-141 (249)
3 KOG0048 Transcription factor, 100.0 1.1E-37 2.3E-42 294.6 11.7 116 12-127 7-122 (238)
4 KOG0049 Transcription factor, 99.7 1.5E-18 3.2E-23 180.1 6.3 107 1-108 347-454 (939)
5 KOG0049 Transcription factor, 99.6 7E-16 1.5E-20 160.5 7.3 118 8-125 247-419 (939)
6 PF13921 Myb_DNA-bind_6: Myb-l 99.5 3.7E-15 8.1E-20 111.9 3.4 60 17-78 1-60 (60)
7 COG5147 REB1 Myb superfamily p 99.5 1.6E-14 3.5E-19 149.5 6.0 107 10-117 16-122 (512)
8 KOG0050 mRNA splicing protein 99.5 8.9E-14 1.9E-18 142.1 7.0 106 12-119 5-110 (617)
9 KOG0051 RNA polymerase I termi 99.4 6.9E-13 1.5E-17 138.9 5.9 104 13-119 383-514 (607)
10 PF00249 Myb_DNA-binding: Myb- 99.3 2E-12 4.4E-17 93.5 5.2 46 67-112 1-48 (48)
11 PF00249 Myb_DNA-binding: Myb- 99.3 4.2E-13 9.1E-18 97.1 0.7 48 14-61 1-48 (48)
12 PF13921 Myb_DNA-bind_6: Myb-l 99.3 5.6E-12 1.2E-16 94.6 4.5 53 70-122 1-53 (60)
13 PLN03212 Transcription repress 99.2 1.9E-11 4.1E-16 116.2 5.7 65 62-126 20-86 (249)
14 smart00717 SANT SANT SWI3, AD 99.2 7.3E-11 1.6E-15 82.6 5.8 47 67-113 1-48 (49)
15 KOG0048 Transcription factor, 99.0 1.3E-10 2.8E-15 110.3 4.3 64 63-126 5-70 (238)
16 PLN03091 hypothetical protein; 99.0 1.6E-10 3.6E-15 117.3 4.7 66 62-127 9-76 (459)
17 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 5.4E-10 1.2E-14 77.1 5.8 44 69-112 1-45 (45)
18 smart00717 SANT SANT SWI3, AD 98.9 1.1E-09 2.4E-14 76.6 2.1 48 14-62 1-48 (49)
19 cd00167 SANT 'SWI3, ADA2, N-Co 98.7 5.7E-09 1.2E-13 72.0 1.7 45 16-61 1-45 (45)
20 KOG0051 RNA polymerase I termi 98.7 1.8E-08 4E-13 106.1 5.1 102 12-115 306-431 (607)
21 COG5147 REB1 Myb superfamily p 98.2 1.7E-07 3.6E-12 97.8 -2.3 93 14-109 291-393 (512)
22 TIGR01557 myb_SHAQKYF myb-like 97.6 3.8E-05 8.2E-10 58.2 2.2 49 13-61 2-54 (57)
23 TIGR01557 myb_SHAQKYF myb-like 97.4 0.00035 7.5E-09 53.0 5.8 48 66-113 2-55 (57)
24 KOG0050 mRNA splicing protein 97.4 0.00013 2.8E-09 75.9 3.6 61 65-125 5-66 (617)
25 KOG0457 Histone acetyltransfer 97.3 0.00039 8.5E-09 71.2 5.9 49 64-112 69-118 (438)
26 KOG0457 Histone acetyltransfer 97.0 0.00023 5.1E-09 72.8 1.3 49 12-61 70-118 (438)
27 PF13325 MCRS_N: N-terminal re 96.8 0.0024 5.3E-08 59.8 6.3 101 16-118 1-132 (199)
28 PF13837 Myb_DNA-bind_4: Myb/S 96.8 0.0012 2.6E-08 52.6 3.3 49 67-115 1-67 (90)
29 TIGR02894 DNA_bind_RsfA transc 96.7 0.0022 4.8E-08 58.1 4.6 52 66-118 3-61 (161)
30 KOG1279 Chromatin remodeling f 96.5 0.0035 7.5E-08 66.1 5.2 46 66-111 252-297 (506)
31 PF08914 Myb_DNA-bind_2: Rap1 96.4 0.005 1.1E-07 47.9 4.4 50 67-116 2-61 (65)
32 COG5259 RSC8 RSC chromatin rem 96.3 0.004 8.7E-08 64.5 4.6 44 68-111 280-323 (531)
33 PF13873 Myb_DNA-bind_5: Myb/S 95.9 0.024 5.3E-07 44.4 6.0 50 67-116 2-73 (78)
34 PF08914 Myb_DNA-bind_2: Rap1 95.8 0.0027 5.9E-08 49.4 0.2 51 14-64 2-60 (65)
35 COG5259 RSC8 RSC chromatin rem 95.6 0.0038 8.3E-08 64.6 0.8 46 13-60 278-323 (531)
36 PRK13923 putative spore coat p 95.6 0.014 3E-07 53.5 4.2 51 66-117 4-61 (170)
37 COG5114 Histone acetyltransfer 95.5 0.032 7E-07 55.7 6.7 46 67-112 63-109 (432)
38 TIGR02894 DNA_bind_RsfA transc 95.5 0.0037 8.1E-08 56.6 0.2 50 12-63 2-57 (161)
39 KOG1279 Chromatin remodeling f 95.2 0.0085 1.8E-07 63.2 1.7 47 12-60 251-297 (506)
40 PF13837 Myb_DNA-bind_4: Myb/S 95.0 0.0062 1.3E-07 48.4 -0.2 47 15-61 2-64 (90)
41 PF13873 Myb_DNA-bind_5: Myb/S 93.9 0.014 3.1E-07 45.7 -0.4 49 13-61 1-69 (78)
42 KOG2656 DNA methyltransferase 93.7 0.16 3.6E-06 51.9 6.6 53 68-120 131-189 (445)
43 COG5114 Histone acetyltransfer 92.9 0.033 7.2E-07 55.6 0.3 48 14-62 63-110 (432)
44 KOG1194 Predicted DNA-binding 92.4 0.33 7.1E-06 50.7 6.7 49 67-115 187-235 (534)
45 PF12776 Myb_DNA-bind_3: Myb/S 92.2 0.36 7.7E-06 38.8 5.6 46 69-114 1-64 (96)
46 PLN03142 Probable chromatin-re 91.4 0.36 7.7E-06 55.3 6.2 100 16-116 826-988 (1033)
47 PRK13923 putative spore coat p 91.1 0.055 1.2E-06 49.7 -0.4 52 11-62 2-57 (170)
48 PF09111 SLIDE: SLIDE; InterP 90.4 0.47 1E-05 41.1 4.7 52 64-115 46-113 (118)
49 KOG4282 Transcription factor G 88.2 0.83 1.8E-05 45.6 5.3 49 67-115 54-116 (345)
50 COG5118 BDP1 Transcription ini 87.6 0.87 1.9E-05 46.7 5.0 47 69-115 367-413 (507)
51 PF08281 Sigma70_r4_2: Sigma-7 85.0 2.5 5.4E-05 30.4 5.1 42 72-114 12-53 (54)
52 KOG4167 Predicted DNA-binding 77.3 4.2 9.2E-05 45.0 5.6 70 40-113 593-665 (907)
53 PF09111 SLIDE: SLIDE; InterP 72.5 2.7 5.8E-05 36.4 2.2 34 11-44 46-82 (118)
54 KOG4282 Transcription factor G 72.4 1.4 3.1E-05 43.9 0.5 47 15-61 55-113 (345)
55 COG5118 BDP1 Transcription ini 66.1 3.1 6.8E-05 42.8 1.5 45 14-60 365-409 (507)
56 PF11626 Rap1_C: TRF2-interact 65.7 5.4 0.00012 32.3 2.5 21 13-33 46-74 (87)
57 PF04545 Sigma70_r4: Sigma-70, 59.6 24 0.00053 25.0 4.8 41 73-114 7-47 (50)
58 PF11035 SnAPC_2_like: Small n 58.8 33 0.00071 34.8 7.0 47 68-114 22-72 (344)
59 KOG4468 Polycomb-group transcr 58.5 17 0.00036 39.7 5.2 50 67-116 88-147 (782)
60 PF07750 GcrA: GcrA cell cycle 58.1 12 0.00026 34.0 3.7 41 69-110 2-42 (162)
61 KOG4329 DNA-binding protein [G 55.9 20 0.00043 37.0 5.0 45 69-113 279-324 (445)
62 KOG0384 Chromodomain-helicase 54.9 13 0.00029 43.5 4.0 75 13-94 1132-1207(1373)
63 KOG3841 TEF-1 and related tran 53.3 23 0.0005 36.7 5.0 54 65-118 74-148 (455)
64 TIGR02985 Sig70_bacteroi1 RNA 52.5 34 0.00074 28.8 5.4 40 74-114 117-156 (161)
65 PF12776 Myb_DNA-bind_3: Myb/S 51.8 7.9 0.00017 30.9 1.2 44 16-59 1-60 (96)
66 PRK11179 DNA-binding transcrip 50.2 27 0.00058 30.8 4.5 45 73-118 9-54 (153)
67 smart00595 MADF subfamily of S 49.8 17 0.00038 28.5 3.0 24 88-112 29-52 (89)
68 PF13404 HTH_AsnC-type: AsnC-t 49.2 35 0.00076 24.0 4.1 38 73-111 3-41 (42)
69 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 48.9 33 0.00072 25.5 4.1 37 72-109 6-42 (50)
70 KOG2009 Transcription initiati 48.4 18 0.00039 39.3 3.6 51 65-115 407-457 (584)
71 PF13325 MCRS_N: N-terminal re 47.2 38 0.00082 32.1 5.2 44 69-113 1-47 (199)
72 PF09420 Nop16: Ribosome bioge 46.6 51 0.0011 29.7 5.8 47 66-112 113-163 (164)
73 cd08319 Death_RAIDD Death doma 43.9 31 0.00067 28.0 3.6 30 75-105 2-31 (83)
74 PRK12523 RNA polymerase sigma 42.2 64 0.0014 28.3 5.6 46 76-122 125-170 (172)
75 TIGR02937 sigma70-ECF RNA poly 42.2 56 0.0012 26.6 5.0 37 77-114 117-153 (158)
76 cd08803 Death_ank3 Death domai 41.3 40 0.00086 27.4 3.8 31 75-106 4-34 (84)
77 PF04504 DUF573: Protein of un 41.2 44 0.00095 27.8 4.1 48 68-115 5-65 (98)
78 PF11626 Rap1_C: TRF2-interact 40.7 27 0.00058 28.3 2.7 17 63-79 43-59 (87)
79 PRK11169 leucine-responsive tr 40.6 38 0.00081 30.2 3.9 46 72-118 13-59 (164)
80 PF13404 HTH_AsnC-type: AsnC-t 39.8 9.5 0.0002 27.0 -0.0 38 20-59 3-40 (42)
81 PRK12532 RNA polymerase sigma 37.7 77 0.0017 28.4 5.6 40 81-121 147-189 (195)
82 PRK11179 DNA-binding transcrip 37.6 13 0.00028 32.8 0.5 45 20-66 9-53 (153)
83 PLN03162 golden-2 like transcr 37.1 3E+02 0.0065 28.8 10.0 46 67-112 237-287 (526)
84 PRK09652 RNA polymerase sigma 36.4 74 0.0016 27.4 5.1 36 78-114 136-171 (182)
85 PRK12512 RNA polymerase sigma 36.3 87 0.0019 27.6 5.6 38 80-118 141-178 (184)
86 PF01388 ARID: ARID/BRIGHT DNA 36.2 83 0.0018 25.0 5.0 36 78-113 41-89 (92)
87 cd08317 Death_ank Death domain 35.7 40 0.00086 26.9 3.0 31 75-106 4-34 (84)
88 PRK11169 leucine-responsive tr 35.5 11 0.00024 33.7 -0.4 46 19-66 13-58 (164)
89 PRK04217 hypothetical protein; 35.0 90 0.0019 26.8 5.2 45 69-115 42-86 (110)
90 PRK12529 RNA polymerase sigma 34.5 1E+02 0.0022 27.3 5.8 39 79-118 136-174 (178)
91 PF10545 MADF_DNA_bdg: Alcohol 34.3 40 0.00086 25.7 2.7 26 88-113 28-54 (85)
92 PRK11924 RNA polymerase sigma 34.0 71 0.0015 27.4 4.6 31 83-114 138-168 (179)
93 cd06171 Sigma70_r4 Sigma70, re 33.9 1E+02 0.0022 20.5 4.6 41 70-112 11-51 (55)
94 PRK09643 RNA polymerase sigma 33.6 75 0.0016 28.6 4.8 36 78-114 142-177 (192)
95 smart00501 BRIGHT BRIGHT, ARID 33.4 91 0.002 25.1 4.8 37 78-114 37-86 (93)
96 cd08318 Death_NMPP84 Death dom 33.4 55 0.0012 26.4 3.5 28 78-106 10-37 (86)
97 KOG4167 Predicted DNA-binding 32.7 20 0.00043 40.0 0.9 43 14-58 619-661 (907)
98 PF07638 Sigma70_ECF: ECF sigm 32.5 1E+02 0.0022 27.8 5.5 39 74-113 139-177 (185)
99 smart00005 DEATH DEATH domain, 29.6 67 0.0014 25.1 3.3 31 74-105 4-35 (88)
100 PRK12515 RNA polymerase sigma 29.4 1.2E+02 0.0025 27.0 5.3 31 83-114 144-174 (189)
101 PLN03142 Probable chromatin-re 29.3 91 0.002 36.4 5.5 45 69-113 826-871 (1033)
102 PRK09641 RNA polymerase sigma 28.8 1.1E+02 0.0023 26.9 4.8 30 84-114 150-179 (187)
103 cd08804 Death_ank2 Death domai 28.6 71 0.0015 25.7 3.4 31 75-106 4-34 (84)
104 PRK09047 RNA polymerase factor 28.5 1.2E+02 0.0025 25.9 4.9 33 81-114 117-149 (161)
105 PRK09645 RNA polymerase sigma 28.5 1.4E+02 0.0031 25.8 5.6 34 80-114 128-161 (173)
106 TIGR02954 Sig70_famx3 RNA poly 27.7 1.2E+02 0.0027 26.2 5.0 31 84-115 133-163 (169)
107 TIGR02939 RpoE_Sigma70 RNA pol 27.0 1E+02 0.0022 27.1 4.4 30 85-115 153-182 (190)
108 TIGR02948 SigW_bacill RNA poly 26.5 1E+02 0.0023 26.9 4.4 30 85-115 151-180 (187)
109 PRK09637 RNA polymerase sigma 26.5 1.2E+02 0.0025 27.2 4.7 36 78-114 114-149 (181)
110 COG2197 CitB Response regulato 26.2 88 0.0019 29.1 4.0 45 68-115 147-191 (211)
111 PRK11923 algU RNA polymerase s 25.9 1.1E+02 0.0024 27.1 4.5 30 84-114 152-181 (193)
112 cd08777 Death_RIP1 Death Domai 25.8 77 0.0017 25.7 3.1 30 76-106 3-32 (86)
113 PRK09648 RNA polymerase sigma 25.8 1.5E+02 0.0032 26.3 5.3 34 81-115 150-183 (189)
114 smart00344 HTH_ASNC helix_turn 25.5 1.3E+02 0.0029 24.2 4.5 45 73-118 3-48 (108)
115 PRK09642 RNA polymerase sigma 24.8 1.6E+02 0.0034 25.2 5.1 31 83-114 119-149 (160)
116 PRK12547 RNA polymerase sigma 24.6 1.7E+02 0.0037 25.4 5.4 37 79-116 121-157 (164)
117 cd08805 Death_ank1 Death domai 24.6 89 0.0019 25.4 3.2 28 75-103 4-31 (84)
118 cd08779 Death_PIDD Death Domai 24.4 74 0.0016 25.7 2.8 21 76-96 3-23 (86)
119 TIGR02943 Sig70_famx1 RNA poly 24.0 1.5E+02 0.0032 26.6 5.0 36 78-114 139-174 (188)
120 PRK12531 RNA polymerase sigma 23.8 1.7E+02 0.0036 26.3 5.2 32 83-115 154-185 (194)
121 PRK12530 RNA polymerase sigma 23.6 1.5E+02 0.0032 26.6 4.8 29 84-113 148-176 (189)
122 PRK09649 RNA polymerase sigma 23.4 2E+02 0.0043 25.7 5.6 31 84-115 144-174 (185)
123 PRK12514 RNA polymerase sigma 23.1 1.7E+02 0.0037 25.6 5.1 29 85-114 144-172 (179)
124 COG2963 Transposase and inacti 23.1 2.2E+02 0.0048 23.5 5.5 45 67-112 5-50 (116)
125 PRK12524 RNA polymerase sigma 22.0 1.6E+02 0.0035 26.4 4.8 35 79-114 145-179 (196)
126 TIGR02999 Sig-70_X6 RNA polyme 21.8 1.8E+02 0.0038 25.5 4.9 32 82-114 146-177 (183)
127 PRK12528 RNA polymerase sigma 21.5 1.9E+02 0.004 24.9 4.9 36 78-114 121-156 (161)
128 KOG3554 Histone deacetylase co 20.9 1.2E+02 0.0026 32.5 4.1 41 69-109 287-328 (693)
129 PRK09651 RNA polymerase sigma 20.5 1.5E+02 0.0034 25.9 4.3 30 84-114 133-162 (172)
130 TIGR02960 SigX5 RNA polymerase 20.5 1.8E+02 0.0039 28.1 5.1 31 84-115 156-186 (324)
131 PRK12537 RNA polymerase sigma 20.4 2.2E+02 0.0048 25.1 5.3 31 84-115 147-177 (182)
132 TIGR02950 SigM_subfam RNA poly 20.1 69 0.0015 27.1 1.9 28 86-114 121-148 (154)
133 PRK13919 putative RNA polymera 20.0 2.2E+02 0.0049 24.9 5.2 30 85-115 150-179 (186)
No 1
>PLN03091 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=337.99 Aligned_cols=164 Identities=57% Similarity=1.001 Sum_probs=154.9
Q ss_pred CCCCccccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHH
Q 039016 1 MGRSPCCEKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQ 80 (367)
Q Consensus 1 mgR~pc~~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lie 80 (367)
|||++||+|.+++|++||+|||++|+++|++||.++|..||..++++|+++|||+||.+||+|+|++++||+|||++|++
T Consensus 1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe 80 (459)
T PLN03091 1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80 (459)
T ss_pred CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred HHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCccccccchhhhhHHHHHHHHHHH
Q 039016 81 LHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKTNPLGQPKDTANLSHMAQWESARLEAEARLV 160 (367)
Q Consensus 81 lv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k~g~~~~~~kp~~~~~~~~k~~~~ls~~aqwesarleae~rlv 160 (367)
++++||++|++||++|||||+++|||||+.++|++++..++++.++++...........+....+.+++++++++|..|+
T Consensus 81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E~~~d~~p~~~~~~~~~s~~~~~el~~~ 160 (459)
T PLN03091 81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGEDKNPPTDDKSDKASSVVSNELNLL 160 (459)
T ss_pred HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccccccccCCccccccccchhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999998877666666777788899999999999887
Q ss_pred Hhhc
Q 039016 161 RESK 164 (367)
Q Consensus 161 res~ 164 (367)
....
T Consensus 161 ~~~~ 164 (459)
T PLN03091 161 KADN 164 (459)
T ss_pred hhhc
Confidence 6643
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=100.00 E-value=1.4e-38 Score=299.58 Aligned_cols=128 Identities=64% Similarity=1.269 Sum_probs=123.9
Q ss_pred CCccccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHHHH
Q 039016 3 RSPCCEKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLH 82 (367)
Q Consensus 3 R~pc~~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv 82 (367)
|+|||+|++++|++||+|||++|+++|++||..+|..||.+++++|+++|||+||.+||+|.|++++||+|||++|++++
T Consensus 14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~ 93 (249)
T PLN03212 14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH 93 (249)
T ss_pred CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence 68999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred HhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCCCCCC
Q 039016 83 ALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKT 130 (367)
Q Consensus 83 ~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k~g~~~~~~kp~~ 130 (367)
.+||++|+.||++|||||+++|||||+.++++++.+.++.+.++++..
T Consensus 94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~ 141 (249)
T PLN03212 94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD 141 (249)
T ss_pred HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999887743
No 3
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=100.00 E-value=1.1e-37 Score=294.62 Aligned_cols=116 Identities=68% Similarity=1.141 Sum_probs=110.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHHHHHhhCCChHH
Q 039016 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSA 91 (367)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~GnkWsk 91 (367)
+.||+||+|||++|++||++||+++|..||.+++++||+|+||+||.|||+|+|+||.||+|||++||+||++|||+|+.
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~ 86 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL 86 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCCC
Q 039016 92 IAAHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHK 127 (367)
Q Consensus 92 IA~~lpgRT~nq~KnRW~~~lkk~l~k~g~~~~~~k 127 (367)
||++|||||+++|||+|++++|+++.+.++++.+..
T Consensus 87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~~ 122 (238)
T KOG0048|consen 87 IAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTHR 122 (238)
T ss_pred HHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 999999999999999999999999999886555443
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.74 E-value=1.5e-18 Score=180.14 Aligned_cols=107 Identities=25% Similarity=0.488 Sum_probs=100.0
Q ss_pred CCCCccccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHH
Q 039016 1 MGRSPCCEKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQ 80 (367)
Q Consensus 1 mgR~pc~~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lie 80 (367)
+||+....-|++++|+||++||.+|.++|.+||..+|.+| ....|+|+..|||+||+|.|+...|.+.|+..||+.||.
T Consensus 347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~-R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~ 425 (939)
T KOG0049|consen 347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKV-RQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY 425 (939)
T ss_pred hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhH-HHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence 5899999999999999999999999999999999999999 667779999999999999999999999999999999999
Q ss_pred HHHhhC-CChHHHhhhCCCCCHHHHHHHH
Q 039016 81 LHALLG-NRWSAIAAHLPKRTDNEIKNYW 108 (367)
Q Consensus 81 lv~~~G-nkWskIA~~lpgRT~nq~KnRW 108 (367)
++++|| +.|.+||.+||.||..|...|=
T Consensus 426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rrR 454 (939)
T KOG0049|consen 426 AVKVYGKGNWAKCAMLLPKKTSRQLRRRR 454 (939)
T ss_pred HHHHHccchHHHHHHHccccchhHHHHHH
Confidence 999999 8999999999999996554443
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.61 E-value=7e-16 Score=160.48 Aligned_cols=118 Identities=23% Similarity=0.425 Sum_probs=98.8
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccc---------------------------------
Q 039016 8 EKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCR--------------------------------- 54 (367)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr--------------------------------- 54 (367)
..|.++|.-|++|||++|.++...++..+|..||+.++.+|+..||.
T Consensus 247 l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~n 326 (939)
T KOG0049|consen 247 LNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSIN 326 (939)
T ss_pred cCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhcc
Confidence 45677777788888888877777777777777777776556666665
Q ss_pred ---------------------cchhhccCCCCcCCCCCHHHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHh
Q 039016 55 ---------------------LRWINYLRPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHL 112 (367)
Q Consensus 55 ---------------------~RW~n~L~p~ikrg~WT~EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~l 112 (367)
-||...|+|.+++|+||.+||.+|+.+|++|| ..|-+|-..+|||++.||+.||...|
T Consensus 327 ShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL 406 (939)
T KOG0049|consen 327 SHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVL 406 (939)
T ss_pred CccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHH
Confidence 67777788999999999999999999999999 56999999999999999999999999
Q ss_pred hhhhhhcCCCCCC
Q 039016 113 KKRLTKMGIDPVT 125 (367)
Q Consensus 113 kk~l~k~g~~~~~ 125 (367)
....++..|.-+.
T Consensus 407 ~~s~K~~rW~l~e 419 (939)
T KOG0049|consen 407 NRSAKVERWTLVE 419 (939)
T ss_pred HHhhccCceeecc
Confidence 9988888776544
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.53 E-value=3.7e-15 Score=111.88 Aligned_cols=60 Identities=42% Similarity=0.890 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHH
Q 039016 17 WTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTI 78 (367)
Q Consensus 17 WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~L 78 (367)
||+|||++|+++|.+|| .+|..||..++ .|++.+|+.||.++|++.+++++||.+||+.|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 99999999999999999 49999977764 79999999999999999999999999999987
No 7
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.50 E-value=1.6e-14 Score=149.45 Aligned_cols=107 Identities=28% Similarity=0.520 Sum_probs=101.4
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHHHHHhhCCCh
Q 039016 10 VGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLGNRW 89 (367)
Q Consensus 10 ~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~GnkW 89 (367)
..++.|.|+..||+.|..+|++||+.+|..||+++. .|++++|+.||.+++.|.+++..|+.+||..|+.|..++|.+|
T Consensus 16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w 94 (512)
T COG5147 16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94 (512)
T ss_pred ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence 456789999999999999999999999999988887 4999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHhhhhhh
Q 039016 90 SAIAAHLPKRTDNEIKNYWNTHLKKRLT 117 (367)
Q Consensus 90 skIA~~lpgRT~nq~KnRW~~~lkk~l~ 117 (367)
+.||..+++||..+|.+||...+.....
T Consensus 95 stia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 95 STIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred hhhccccCccchHHHHHHHHHHhhhhhc
Confidence 9999999999999999999988877655
No 8
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=8.9e-14 Score=142.13 Aligned_cols=106 Identities=25% Similarity=0.554 Sum_probs=99.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHHHHHhhCCChHH
Q 039016 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSA 91 (367)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~GnkWsk 91 (367)
++.|-|+.-||+.|..+|.+||...|+.|++.+. ..+++||+.||..+|+|.|++..|+.|||+.|++|...+...|..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt 83 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT 83 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence 5789999999999999999999999999965555 889999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHhhhhhhhc
Q 039016 92 IAAHLPKRTDNEIKNYWNTHLKKRLTKM 119 (367)
Q Consensus 92 IA~~lpgRT~nq~KnRW~~~lkk~l~k~ 119 (367)
||..| ||+.+||-.||+.++-......
T Consensus 84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~~ 110 (617)
T KOG0050|consen 84 IADIM-GRTSQQCLERYNNLLDVYVSYH 110 (617)
T ss_pred HHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence 99999 9999999999999987766654
No 9
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.35 E-value=6.9e-13 Score=138.86 Aligned_cols=104 Identities=26% Similarity=0.591 Sum_probs=92.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCC--CcCCCCCHHHHHHHHHHHH-------
Q 039016 13 KKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPD--IKRGKFSLQEEQTIIQLHA------- 83 (367)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~--ikrg~WT~EED~~Lielv~------- 83 (367)
.+|.||+||++.|..+|.++| +.|.+|+..++ |.+..||+||.+|.+.+ .+++.||.||+++|+++|.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~ 459 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL 459 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999 59999966665 99999999999999987 4999999999999999995
Q ss_pred hh-------------------CCChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhc
Q 039016 84 LL-------------------GNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTKM 119 (367)
Q Consensus 84 ~~-------------------GnkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k~ 119 (367)
++ +-.|+.|++.+..|+..||+.+|+.++.......
T Consensus 460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~ 514 (607)
T KOG0051|consen 460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNK 514 (607)
T ss_pred cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhc
Confidence 33 1269999999999999999999999987765543
No 10
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.32 E-value=2e-12 Score=93.50 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCC-hHHHhhhCC-CCCHHHHHHHHHHHh
Q 039016 67 RGKFSLQEEQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNTHL 112 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~Gnk-WskIA~~lp-gRT~nq~KnRW~~~l 112 (367)
|++||+|||++|++++++||.+ |..||..|| +||..||++||+.++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999988 999999999 999999999999874
No 11
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.30 E-value=4.2e-13 Score=97.08 Aligned_cols=48 Identities=40% Similarity=0.823 Sum_probs=42.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhcc
Q 039016 14 KGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYL 61 (367)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L 61 (367)
|++||+|||++|+++|.+||.++|..||..++.+|++.||+.||.+||
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998779999887777999999999999875
No 12
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.26 E-value=5.6e-12 Score=94.60 Aligned_cols=53 Identities=28% Similarity=0.631 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhcCCC
Q 039016 70 FSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTKMGID 122 (367)
Q Consensus 70 WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k~g~~ 122 (367)
||+|||++|++++.+||++|.+||.+|+.||..+|++||+.+|++.+.+..|.
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt 53 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWT 53 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSS
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcC
Confidence 99999999999999999999999999977999999999999776665555443
No 13
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.19 E-value=1.9e-11 Score=116.23 Aligned_cols=65 Identities=18% Similarity=0.441 Sum_probs=59.6
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHhhC-CChHHHhhhC-CCCCHHHHHHHHHHHhhhhhhhcCCCCCCC
Q 039016 62 RPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIAAHL-PKRTDNEIKNYWNTHLKKRLTKMGIDPVTH 126 (367)
Q Consensus 62 ~p~ikrg~WT~EED~~Lielv~~~G-nkWskIA~~l-pgRT~nq~KnRW~~~lkk~l~k~g~~~~~~ 126 (367)
++.+++++||+|||++|++++++|| ++|..||+.+ ++||.+||+.||..+|++.+.+..|.....
T Consensus 20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED 86 (249)
T PLN03212 20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEE 86 (249)
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHH
Confidence 3679999999999999999999999 6899999998 699999999999999999999998876643
No 14
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.15 E-value=7.3e-11 Score=82.63 Aligned_cols=47 Identities=36% Similarity=0.743 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHhh
Q 039016 67 RGKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHLK 113 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~lk 113 (367)
+++||++||.+|++++++|| .+|..||..|++||..+|++||+.+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998764
No 15
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.04 E-value=1.3e-10 Score=110.27 Aligned_cols=64 Identities=17% Similarity=0.334 Sum_probs=58.4
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhhC-CChHHHhhhCC-CCCHHHHHHHHHHHhhhhhhhcCCCCCCC
Q 039016 63 PDIKRGKFSLQEEQTIIQLHALLG-NRWSAIAAHLP-KRTDNEIKNYWNTHLKKRLTKMGIDPVTH 126 (367)
Q Consensus 63 p~ikrg~WT~EED~~Lielv~~~G-nkWskIA~~lp-gRT~nq~KnRW~~~lkk~l~k~g~~~~~~ 126 (367)
+.+.+|+||+|||++|+++|++|| .+|..||+.++ +|+.++|+-||..+|++.+++..|.++..
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe 70 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEE 70 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHH
Confidence 345579999999999999999999 67999999999 99999999999999999999998877653
No 16
>PLN03091 hypothetical protein; Provisional
Probab=99.03 E-value=1.6e-10 Score=117.26 Aligned_cols=66 Identities=15% Similarity=0.384 Sum_probs=59.9
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHhhC-CChHHHhhhC-CCCCHHHHHHHHHHHhhhhhhhcCCCCCCCC
Q 039016 62 RPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIAAHL-PKRTDNEIKNYWNTHLKKRLTKMGIDPVTHK 127 (367)
Q Consensus 62 ~p~ikrg~WT~EED~~Lielv~~~G-nkWskIA~~l-pgRT~nq~KnRW~~~lkk~l~k~g~~~~~~k 127 (367)
+..+++++||+|||++|+++|++|| .+|..||+.+ ++|+++||+.||..+|++.+++..|.+..+.
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~ 76 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEEN 76 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHH
Confidence 3578999999999999999999999 5899999998 4999999999999999999999988876553
No 17
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.03 E-value=5.4e-10 Score=77.13 Aligned_cols=44 Identities=27% Similarity=0.607 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHh
Q 039016 69 KFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHL 112 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~l 112 (367)
+||++|+++|++++++|| .+|..||..|++||..+|++||+.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999 99999999999999999999998753
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.85 E-value=1.1e-09 Score=76.59 Aligned_cols=48 Identities=35% Similarity=0.821 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccC
Q 039016 14 KGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLR 62 (367)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~ 62 (367)
+++||++||++|..++.+||..+|..|+..++ +|++.+|+.||.++++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence 47899999999999999999779999976665 9999999999998765
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.70 E-value=5.7e-09 Score=71.97 Aligned_cols=45 Identities=40% Similarity=0.823 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhcc
Q 039016 16 PWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYL 61 (367)
Q Consensus 16 ~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L 61 (367)
+||+|||++|++++.+||.++|..|+..++ +|++.+|+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence 599999999999999999779999976665 899999999998753
No 20
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.67 E-value=1.8e-08 Score=106.07 Aligned_cols=102 Identities=25% Similarity=0.319 Sum_probs=82.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhCC---------------CC--------ccccccccccccCccccccchhhccCCCC-cC
Q 039016 12 LKKGPWTPEEDQKLLAFIEQHGH---------------GS--------WRALPAKAGLQRCGKSCRLRWINYLRPDI-KR 67 (367)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~~G~---------------~n--------W~~Ia~k~~~~Rt~kqCr~RW~n~L~p~i-kr 67 (367)
++-+.|+++||+.|.+.|..|-. .. |..|. .+.|-|+.++.+.+-++...|-- ++
T Consensus 306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~-~~Lp~R~~~siy~~~rR~y~~FE~~r 384 (607)
T KOG0051|consen 306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLY-KLLPYRDRKSIYHHLRRAYTPFENKR 384 (607)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhh-hhcCcccchhHHHHHHhcCCcccccc
Confidence 34489999999999999998822 12 45553 33456999988774444444433 99
Q ss_pred CCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 68 GKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 68 g~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
|.||+||++.|..+|.++|+.|..|+..| ||.+..|+.||+.+.+..
T Consensus 385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g 431 (607)
T KOG0051|consen 385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCG 431 (607)
T ss_pred CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccc
Confidence 99999999999999999999999999999 999999999999887543
No 21
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.18 E-value=1.7e-07 Score=97.85 Aligned_cols=93 Identities=29% Similarity=0.646 Sum_probs=79.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCC--CCcCCCCCHHHHHHHHHHHHhhC-----
Q 039016 14 KGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRP--DIKRGKFSLQEEQTIIQLHALLG----- 86 (367)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p--~ikrg~WT~EED~~Lielv~~~G----- 86 (367)
+|.||+||++.|...+.++| +.|..|...+ +|-+..||+||.+|... .+++++|+.||+.+|...+...-
T Consensus 291 ~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~--~rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~~ 367 (512)
T COG5147 291 RGKWTKEEEQELAKLVVEHG-GSWTEIGKLL--GRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQQ 367 (512)
T ss_pred hccCcccccccccccccccc-chhhHhhhhh--ccCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHhh
Confidence 78999999999999999999 5999994433 69999999999999988 68899999999999998876322
Q ss_pred ---CChHHHhhhCCCCCHHHHHHHHH
Q 039016 87 ---NRWSAIAAHLPKRTDNEIKNYWN 109 (367)
Q Consensus 87 ---nkWskIA~~lpgRT~nq~KnRW~ 109 (367)
-.|..|+.+++.|..-.|+.++.
T Consensus 368 ~~~~~~~li~~~~~~~~~~~~~~~~~ 393 (512)
T COG5147 368 SSRILWLLIAQNIRNRLQHHCRDKYG 393 (512)
T ss_pred hhhhhHHHHHHhhhccccCCCCCccc
Confidence 46999999998888777766554
No 22
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.59 E-value=3.8e-05 Score=58.23 Aligned_cols=49 Identities=12% Similarity=0.290 Sum_probs=43.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCc---ccccccccccc-Cccccccchhhcc
Q 039016 13 KKGPWTPEEDQKLLAFIEQHGHGSW---RALPAKAGLQR-CGKSCRLRWINYL 61 (367)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~~G~~nW---~~Ia~k~~~~R-t~kqCr~RW~n~L 61 (367)
++-.||+||.++++.+|+.+|.|+| ..|+..|...| +..||+.+++.|.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998899 99988887667 9999999998874
No 23
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.45 E-value=0.00035 Score=53.00 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=41.8
Q ss_pred cCCCCCHHHHHHHHHHHHhhCC-Ch---HHHhhhCC-CC-CHHHHHHHHHHHhh
Q 039016 66 KRGKFSLQEEQTIIQLHALLGN-RW---SAIAAHLP-KR-TDNEIKNYWNTHLK 113 (367)
Q Consensus 66 krg~WT~EED~~Lielv~~~Gn-kW---skIA~~lp-gR-T~nq~KnRW~~~lk 113 (367)
.+-.||+||...++++++.||. +| .+|+..|. .| |..||+.+.+.+..
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 3567999999999999999996 99 99999984 35 99999999887653
No 24
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.37 E-value=0.00013 Score=75.93 Aligned_cols=61 Identities=26% Similarity=0.427 Sum_probs=56.3
Q ss_pred CcCCCCCHHHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhcCCCCCC
Q 039016 65 IKRGKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVT 125 (367)
Q Consensus 65 ikrg~WT~EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k~g~~~~~ 125 (367)
++.|-|+.-||+.|--++.+|| +.|++|++.++..|+.||++||..++.+.+++..|....
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~ee 66 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREE 66 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhH
Confidence 6788999999999999999999 889999999999999999999999999999988876543
No 25
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.29 E-value=0.00039 Score=71.16 Aligned_cols=49 Identities=24% Similarity=0.458 Sum_probs=44.8
Q ss_pred CCcCCCCCHHHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHh
Q 039016 64 DIKRGKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHL 112 (367)
Q Consensus 64 ~ikrg~WT~EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~l 112 (367)
.+-...||.+||.+|++++..|| ++|..||.++..||..+||.+|..++
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence 45556899999999999999999 99999999999999999999998665
No 26
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.02 E-value=0.00023 Score=72.78 Aligned_cols=49 Identities=22% Similarity=0.605 Sum_probs=45.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhcc
Q 039016 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYL 61 (367)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L 61 (367)
+-...||.+|+-+|+++++.||-|||..||..++ .|++.+|+++|.+++
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence 4467899999999999999999999999999999 999999999999864
No 27
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.85 E-value=0.0024 Score=59.80 Aligned_cols=101 Identities=21% Similarity=0.334 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccc--cccCccccccchhhccCC-CC--------------------cCCCCCH
Q 039016 16 PWTPEEDQKLLAFIEQHGHGSWRALPAKAG--LQRCGKSCRLRWINYLRP-DI--------------------KRGKFSL 72 (367)
Q Consensus 16 ~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~--~~Rt~kqCr~RW~n~L~p-~i--------------------krg~WT~ 72 (367)
+|++++|-+|+.+|..-. +-+.|+.-+- -.-|-+.+.+||...|.. .+ .+.+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 699999999999998765 3555532221 223556677899887532 22 3358999
Q ss_pred HHHHHHHHHHHhhC---CChHHHhh-----hCCCCCHHHHHHHHHHHhhhhhhh
Q 039016 73 QEEQTIIQLHALLG---NRWSAIAA-----HLPKRTDNEIKNYWNTHLKKRLTK 118 (367)
Q Consensus 73 EED~~Lielv~~~G---nkWskIA~-----~lpgRT~nq~KnRW~~~lkk~l~k 118 (367)
+||++|........ ..+.+|-. +-++||+.++.++|..+.+..+..
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~ 132 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP 132 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence 99999998765543 24666632 347899999999999777666553
No 28
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.79 E-value=0.0012 Score=52.57 Aligned_cols=49 Identities=31% Similarity=0.509 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHHh------hCC--------ChHHHhhhC----CCCCHHHHHHHHHHHhhhh
Q 039016 67 RGKFSLQEEQTIIQLHAL------LGN--------RWSAIAAHL----PKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~------~Gn--------kWskIA~~l----pgRT~nq~KnRW~~~lkk~ 115 (367)
|..||.+|...||++... +++ -|..||..| ..||..||+++|+.+.+.-
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 357999999999999876 221 499999998 3699999999999976543
No 29
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.69 E-value=0.0022 Score=58.10 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=45.3
Q ss_pred cCCCCCHHHHHHHHHHHHhh---C----CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 039016 66 KRGKFSLQEEQTIIQLHALL---G----NRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTK 118 (367)
Q Consensus 66 krg~WT~EED~~Lielv~~~---G----nkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k 118 (367)
+...||.|||.+|.+.|-.| | .-+..++..| +||+.+|.=|||..+|+++..
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~ 61 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE 61 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence 45689999999999999887 3 2488999999 999999999999999987654
No 30
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.49 E-value=0.0035 Score=66.06 Aligned_cols=46 Identities=15% Similarity=0.352 Sum_probs=42.8
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHH
Q 039016 66 KRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTH 111 (367)
Q Consensus 66 krg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~ 111 (367)
-+..||.+|..+|++.+..||.+|.+||.++.+||..||--++-.+
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 4568999999999999999999999999999999999999998755
No 31
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.41 E-value=0.005 Score=47.92 Aligned_cols=50 Identities=18% Similarity=0.412 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHhhC--------CC-hHHHhhhCC-CCCHHHHHHHHHHHhhhhh
Q 039016 67 RGKFSLQEEQTIIQLHALLG--------NR-WSAIAAHLP-KRTDNEIKNYWNTHLKKRL 116 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~G--------nk-WskIA~~lp-gRT~nq~KnRW~~~lkk~l 116 (367)
|-+||.|||.+|++.++.+. |+ |.+++..-| .+|-...|+||...|+.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 45899999999999996542 22 999999888 8999999999998887664
No 32
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.35 E-value=0.004 Score=64.52 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHH
Q 039016 68 GKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTH 111 (367)
Q Consensus 68 g~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~ 111 (367)
..||.+|..+|++.++.||..|.+||.|+..||..||.-||-.+
T Consensus 280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 37999999999999999999999999999999999999999754
No 33
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.89 E-value=0.024 Score=44.36 Aligned_cols=50 Identities=28% Similarity=0.472 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHhhC----C-------------ChHHHhhhC-----CCCCHHHHHHHHHHHhhhhh
Q 039016 67 RGKFSLQEEQTIIQLHALLG----N-------------RWSAIAAHL-----PKRTDNEIKNYWNTHLKKRL 116 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~G----n-------------kWskIA~~l-----pgRT~nq~KnRW~~~lkk~l 116 (367)
...||.+|..+|++++.+|. + -|..|+..| +.||..+||.+|..+.....
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K 73 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK 73 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 35799999999999998863 1 399999887 35999999999998875543
No 34
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=95.78 E-value=0.0027 Score=49.40 Aligned_cols=51 Identities=29% Similarity=0.574 Sum_probs=32.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCC------C--CccccccccccccCccccccchhhccCCC
Q 039016 14 KGPWTPEEDQKLLAFIEQHGH------G--SWRALPAKAGLQRCGKSCRLRWINYLRPD 64 (367)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~~G~------~--nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ 64 (367)
+.+||.|||+.|..+|.++.. | =|.+++......++-.+-|+||...|.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 458999999999999976632 2 29999666655888888999999998763
No 35
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=95.65 E-value=0.0038 Score=64.64 Aligned_cols=46 Identities=24% Similarity=0.536 Sum_probs=42.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhc
Q 039016 13 KKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINY 60 (367)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~ 60 (367)
+...||.+|-.+|++.|+.||. +|.+||..++ .|+..||..||.+.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence 5669999999999999999996 9999999998 99999999999875
No 36
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=95.62 E-value=0.014 Score=53.49 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=42.8
Q ss_pred cCCCCCHHHHHHHHHHHHhhCC-------ChHHHhhhCCCCCHHHHHHHHHHHhhhhhh
Q 039016 66 KRGKFSLQEEQTIIQLHALLGN-------RWSAIAAHLPKRTDNEIKNYWNTHLKKRLT 117 (367)
Q Consensus 66 krg~WT~EED~~Lielv~~~Gn-------kWskIA~~lpgRT~nq~KnRW~~~lkk~l~ 117 (367)
+...||.|+|.+|.+.+..|+. -...++..| +||..+|.-|||..++++..
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye 61 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ 61 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence 5678999999999888888763 266677788 99999999999999987754
No 37
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.55 E-value=0.032 Score=55.70 Aligned_cols=46 Identities=26% Similarity=0.412 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHh
Q 039016 67 RGKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHL 112 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~l 112 (367)
...|+.+|+.+||+....+| ++|..||.++..|+..+||.+|....
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y 109 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMY 109 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34799999999999999999 99999999999999999999986544
No 38
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.53 E-value=0.0037 Score=56.63 Aligned_cols=50 Identities=26% Similarity=0.555 Sum_probs=40.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhCC------CCccccccccccccCccccccchhhccCC
Q 039016 12 LKKGPWTPEEDQKLLAFIEQHGH------GSWRALPAKAGLQRCGKSCRLRWINYLRP 63 (367)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~~G~------~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p 63 (367)
.|+..||.|||.+|-..|-+|-. ....+++.++ +||+.-|..||..+++.
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L--~RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL--NRTAAACGFRWNAYVRK 57 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--cccHHHhcchHHHHHHH
Confidence 57889999999999999999832 1355665555 49999999999999874
No 39
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=95.25 E-value=0.0085 Score=63.19 Aligned_cols=47 Identities=26% Similarity=0.582 Sum_probs=43.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhc
Q 039016 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINY 60 (367)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~ 60 (367)
--+..||.+|+.+|+..|+.||. +|.+|+..++ .|+..||..++.+.
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL 297 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence 34679999999999999999996 9999998888 99999999999875
No 40
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=94.95 E-value=0.0062 Score=48.44 Aligned_cols=47 Identities=26% Similarity=0.631 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHH--h----C---C----CCcccccccc---ccccCccccccchhhcc
Q 039016 15 GPWTPEEDQKLLAFIEQ--H----G---H----GSWRALPAKA---GLQRCGKSCRLRWINYL 61 (367)
Q Consensus 15 g~WT~EEDe~L~~~V~~--~----G---~----~nW~~Ia~k~---~~~Rt~kqCr~RW~n~L 61 (367)
-.||.+|...|+.++.. + + . .-|..||..| |..|++.||+.||.+..
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 47999999999999987 2 1 1 1499998776 57899999999999853
No 41
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=93.87 E-value=0.014 Score=45.70 Aligned_cols=49 Identities=22% Similarity=0.488 Sum_probs=40.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC----------------CCccccccccc----cccCccccccchhhcc
Q 039016 13 KKGPWTPEEDQKLLAFIEQHGH----------------GSWRALPAKAG----LQRCGKSCRLRWINYL 61 (367)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~~G~----------------~nW~~Ia~k~~----~~Rt~kqCr~RW~n~L 61 (367)
|+..||++|.+.|+++|.+|.. .-|..|+..+. ..|+..+|+.+|.++.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999832 24999987662 4799999999999864
No 42
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=93.66 E-value=0.16 Score=51.90 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCChHHHhhh-----CCC-CCHHHHHHHHHHHhhhhhhhcC
Q 039016 68 GKFSLQEEQTIIQLHALLGNRWSAIAAH-----LPK-RTDNEIKNYWNTHLKKRLTKMG 120 (367)
Q Consensus 68 g~WT~EED~~Lielv~~~GnkWskIA~~-----lpg-RT~nq~KnRW~~~lkk~l~k~g 120 (367)
..||.+|-+-|++|++.|.-+|-.||.. ++. ||-.++|.||+...++.++...
T Consensus 131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~ 189 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARA 189 (445)
T ss_pred ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccC
Confidence 4699999999999999999999999977 666 9999999999999988776543
No 43
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=92.86 E-value=0.033 Score=55.60 Aligned_cols=48 Identities=17% Similarity=0.509 Sum_probs=44.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccC
Q 039016 14 KGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLR 62 (367)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~ 62 (367)
---|+..|+.+|++..+..|-|||..||..+| .|....|+.+|..++.
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence 34699999999999999999999999999999 9999999999988764
No 44
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=92.39 E-value=0.33 Score=50.66 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 67 RGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
...||.||-.++-++...||.++.+|-+.||.|+-..|..+|....|.+
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~ 235 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTR 235 (534)
T ss_pred cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence 3579999999999999999999999999999999999999988766544
No 45
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=92.24 E-value=0.36 Score=38.78 Aligned_cols=46 Identities=26% Similarity=0.478 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHhh---CC----------ChHHHhhhC---CC--CCHHHHHHHHHHHhhh
Q 039016 69 KFSLQEEQTIIQLHALL---GN----------RWSAIAAHL---PK--RTDNEIKNYWNTHLKK 114 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~---Gn----------kWskIA~~l---pg--RT~nq~KnRW~~~lkk 114 (367)
.||+++++.|++++.+. |+ .|..|+..| +| .|..||++||..+.+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 49999999999998543 22 299999887 23 5889999999877654
No 46
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=91.39 E-value=0.36 Score=55.32 Aligned_cols=100 Identities=13% Similarity=0.308 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccccccCccccc-----------------------------------------
Q 039016 16 PWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCR----------------------------------------- 54 (367)
Q Consensus 16 ~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr----------------------------------------- 54 (367)
-|+.-|=..++.+..+||..+-..||..+. +++...++
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~ 904 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG 904 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777888888888877777766553 45544433
Q ss_pred -------cchhhc-c-CCCCcCCCCCHHHHHHHHHHHHhhC-CChHHHhhh------------CCCCCHHHHHHHHHHHh
Q 039016 55 -------LRWINY-L-RPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIAAH------------LPKRTDNEIKNYWNTHL 112 (367)
Q Consensus 55 -------~RW~n~-L-~p~ikrg~WT~EED~~Lielv~~~G-nkWskIA~~------------lpgRT~nq~KnRW~~~l 112 (367)
.-|... + .+..++..+|+|||+.|+-.+.+|| .+|.+|-.. |..||+.+|..|.++++
T Consensus 905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~ 984 (1033)
T PLN03142 905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI 984 (1033)
T ss_pred HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence 223221 0 1233444699999999999999999 789998433 25899999999999998
Q ss_pred hhhh
Q 039016 113 KKRL 116 (367)
Q Consensus 113 kk~l 116 (367)
+-..
T Consensus 985 ~~~~ 988 (1033)
T PLN03142 985 RLIE 988 (1033)
T ss_pred HHHH
Confidence 6653
No 47
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=91.10 E-value=0.055 Score=49.68 Aligned_cols=52 Identities=27% Similarity=0.482 Sum_probs=38.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccCccccccchhhccC
Q 039016 11 GLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKA----GLQRCGKSCRLRWINYLR 62 (367)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~----~~~Rt~kqCr~RW~n~L~ 62 (367)
..|+..||.|||.+|-..|-+|+...=..+++-. -++|+...|..||.-+++
T Consensus 2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vr 57 (170)
T PRK13923 2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVR 57 (170)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHH
Confidence 3578899999999999999998753333332211 157999999999977766
No 48
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=90.39 E-value=0.47 Score=41.07 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=41.5
Q ss_pred CCcCCCCCHHHHHHHHHHHHhhCC----ChHHHhhhC------------CCCCHHHHHHHHHHHhhhh
Q 039016 64 DIKRGKFSLQEEQTIIQLHALLGN----RWSAIAAHL------------PKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 64 ~ikrg~WT~EED~~Lielv~~~Gn----kWskIA~~l------------pgRT~nq~KnRW~~~lkk~ 115 (367)
..++..||++||..|+-.+.+||- .|..|-..+ ..||+.+|..|.+++++-.
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 456778999999999999999995 798886543 5799999999999998654
No 49
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=88.16 E-value=0.83 Score=45.59 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHhh----------CCChHHHhhhC----CCCCHHHHHHHHHHHhhhh
Q 039016 67 RGKFSLQEEQTIIQLHALL----------GNRWSAIAAHL----PKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~----------GnkWskIA~~l----pgRT~nq~KnRW~~~lkk~ 115 (367)
...|+.+|-.+||++..+. +.-|..||+.+ --||+.+||++|.++.++-
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y 116 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY 116 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999988643 23499999965 3499999999999887554
No 50
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=87.58 E-value=0.87 Score=46.70 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 69 KFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
+|+.+|-++...+....|..+..|+..||.|...|||.+|..--|++
T Consensus 367 ~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~n 413 (507)
T COG5118 367 RWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVN 413 (507)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhC
Confidence 79999999999999999999999999999999999999998655443
No 51
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=84.96 E-value=2.5 Score=30.42 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 72 LQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 72 ~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
+++++.++.++-..|-.|.+||..+ |.+...|+.+....+++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~ 53 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK 53 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence 4678889999999999999999999 99999999988766643
No 52
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=77.26 E-value=4.2 Score=44.97 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=52.6
Q ss_pred cccccccccCccccccchhhccCCCCc---CCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhh
Q 039016 40 LPAKAGLQRCGKSCRLRWINYLRPDIK---RGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLK 113 (367)
Q Consensus 40 Ia~k~~~~Rt~kqCr~RW~n~L~p~ik---rg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lk 113 (367)
+|..+.+-|.. .||+.|+.-+.. ...||+.|..+.-+++-.|..++-.|++.++++|-.+|-.+|++..|
T Consensus 593 vAlE~LLlr~p----~~~~~h~la~Y~Y~gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK 665 (907)
T KOG4167|consen 593 VALEMLLLRKP----VRLKCHPLANYHYAGSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKK 665 (907)
T ss_pred HHHHHHHhcCC----CCccccccceeeecCcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33444444544 345555433322 23699999999999999999999999999999999999999887654
No 53
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=72.55 E-value=2.7 Score=36.41 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=27.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCC---CCcccccccc
Q 039016 11 GLKKGPWTPEEDQKLLAFIEQHGH---GSWRALPAKA 44 (367)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~~G~---~nW~~Ia~k~ 44 (367)
+-++..||.+||.-|+-.+.+||. +.|..|-..+
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I 82 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI 82 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 566889999999999999999999 8999995443
No 54
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=72.35 E-value=1.4 Score=43.93 Aligned_cols=47 Identities=26% Similarity=0.511 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHh----CCC-----Ccccccccc---ccccCccccccchhhcc
Q 039016 15 GPWTPEEDQKLLAFIEQH----GHG-----SWRALPAKA---GLQRCGKSCRLRWINYL 61 (367)
Q Consensus 15 g~WT~EEDe~L~~~V~~~----G~~-----nW~~Ia~k~---~~~Rt~kqCr~RW~n~L 61 (367)
..|+.+|-..|+.+..+. ..+ -|..||.++ +..|++.||+.+|.+..
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 789999999999987643 222 499998754 57899999999998854
No 55
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=66.11 E-value=3.1 Score=42.79 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=40.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhc
Q 039016 14 KGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINY 60 (367)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~ 60 (367)
--+|+.+|-+++.+++...|+ +...| +.+.|.|..+|+..+|.+-
T Consensus 365 ~~~Ws~~e~ekFYKALs~wGt-dF~LI-s~lfP~R~RkqIKaKfi~E 409 (507)
T COG5118 365 ALRWSKKEIEKFYKALSIWGT-DFSLI-SSLFPNRERKQIKAKFIKE 409 (507)
T ss_pred CCcccHHHHHHHHHHHHHhcc-hHHHH-HHhcCchhHHHHHHHHHHH
Confidence 358999999999999999997 99999 6788899999999998763
No 56
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=65.71 E-value=5.4 Score=32.33 Aligned_cols=21 Identities=48% Similarity=0.944 Sum_probs=13.1
Q ss_pred ccCCCCHHHHHHH--------HHHHHHhC
Q 039016 13 KKGPWTPEEDQKL--------LAFIEQHG 33 (367)
Q Consensus 13 kKg~WT~EEDe~L--------~~~V~~~G 33 (367)
-.|-||+|+|+.| .+++++||
T Consensus 46 ~~GiWT~eDD~~L~~~~~~~~~~L~~khG 74 (87)
T PF11626_consen 46 MPGIWTPEDDEMLRSGDKDDIERLIKKHG 74 (87)
T ss_dssp -TT---HHHHHHHTS--HHHHHHHHHHH-
T ss_pred CCCCcCHHHHHHHHcCCHHHHHHHHHHhC
Confidence 3788999999999 45667787
No 57
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=59.60 E-value=24 Score=24.97 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 73 QEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 73 EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
++++.+|.+.=..|-.+..||..| |-+...|+.+-+..+++
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~k 47 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKK 47 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHH
Confidence 455666666666678899999999 88999999988877754
No 58
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=58.85 E-value=33 Score=34.76 Aligned_cols=47 Identities=21% Similarity=0.442 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHhh-CC---ChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 68 GKFSLQEEQTIIQLHALL-GN---RWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 68 g~WT~EED~~Lielv~~~-Gn---kWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
..||..|.+.|+++.+.. |. +-..|++.++||+..+|++.-+.+..+
T Consensus 22 ~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~r 72 (344)
T PF11035_consen 22 AAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGR 72 (344)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHH
Confidence 469999999988887654 54 356889999999999999976554433
No 59
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=58.45 E-value=17 Score=39.73 Aligned_cols=50 Identities=12% Similarity=0.405 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCCChHHHh----------hhCCCCCHHHHHHHHHHHhhhhh
Q 039016 67 RGKFSLQEEQTIIQLHALLGNRWSAIA----------AHLPKRTDNEIKNYWNTHLKKRL 116 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~GnkWskIA----------~~lpgRT~nq~KnRW~~~lkk~l 116 (367)
+..||-+|+.-...+.+++|.++.+|- ....-+|..|++.+|+..+++.-
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~ 147 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMN 147 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 568999999999999999999999993 22344678889888887776543
No 60
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=58.05 E-value=12 Score=33.97 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHH
Q 039016 69 KFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNT 110 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~ 110 (367)
.||+|+.++|.+|..+ |-.=++||..|.+.|.|.|.-+-+.
T Consensus 2 ~Wtde~~~~L~~lw~~-G~SasqIA~~lg~vsRnAViGk~hR 42 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-GLSASQIARQLGGVSRNAVIGKAHR 42 (162)
T ss_pred CCCHHHHHHHHHHHHc-CCCHHHHHHHhCCcchhhhhhhhhc
Confidence 5999999999999854 8889999999987999999876553
No 61
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=55.90 E-value=20 Score=37.01 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHhhCCChHHHh-hhCCCCCHHHHHHHHHHHhh
Q 039016 69 KFSLQEEQTIIQLHALLGNRWSAIA-AHLPKRTDNEIKNYWNTHLK 113 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~GnkWskIA-~~lpgRT~nq~KnRW~~~lk 113 (367)
.|+++|-+..-+-.+.||.++..|. ..++.|+--+|-.+|+..+|
T Consensus 279 ~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWKk 324 (445)
T KOG4329|consen 279 GWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWKK 324 (445)
T ss_pred cCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhhc
Confidence 6999999999999999999999996 56899999999998876653
No 62
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=54.87 E-value=13 Score=43.47 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=47.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHHHHHhh-CCChHH
Q 039016 13 KKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALL-GNRWSA 91 (367)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~-GnkWsk 91 (367)
.---|..+||..|+-.|-+||.|+|..| ++- +.-|.. =+..+...+-++.+=..+-..|+.+...+ +.+|.+
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~I--r~D----p~L~l~-dKi~~~e~~P~a~~L~~R~~yLls~~~~~~~~~~~~ 1204 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAI--RLD----PDLGLT-DKIFLVETVPQAKHLQRRADYLLSLLRKHDKGNTPK 1204 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHh--ccC----ccccch-hhhcccccCCchHHHHHHHHHHHHHHhhcccCCCch
Confidence 4567999999999999999999999999 221 111211 11122222344556666667777777666 455555
Q ss_pred Hhh
Q 039016 92 IAA 94 (367)
Q Consensus 92 IA~ 94 (367)
...
T Consensus 1205 ~~~ 1207 (1373)
T KOG0384|consen 1205 KLK 1207 (1373)
T ss_pred hhh
Confidence 443
No 63
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=53.32 E-value=23 Score=36.68 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=44.1
Q ss_pred CcCCCCCHHHHHHHHHHHHhhC----------------CChHHHhhhC-----CCCCHHHHHHHHHHHhhhhhhh
Q 039016 65 IKRGKFSLQEEQTIIQLHALLG----------------NRWSAIAAHL-----PKRTDNEIKNYWNTHLKKRLTK 118 (367)
Q Consensus 65 ikrg~WT~EED~~Lielv~~~G----------------nkWskIA~~l-----pgRT~nq~KnRW~~~lkk~l~k 118 (367)
...|.|+++=|+...++.+.|. +|=..||+++ ..||.+||-.+-+.+-|+++++
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~re 148 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLRE 148 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999998874 2468899887 3489999999988888877665
No 64
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=52.49 E-value=34 Score=28.84 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 74 EEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 74 ED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
++..++.+.-..|-.+..||+.+ |.+...|+.+....+++
T Consensus 117 ~~r~il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~ 156 (161)
T TIGR02985 117 QCRKIFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALKE 156 (161)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33444445444578999999999 99999999999886644
No 65
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=51.78 E-value=7.9 Score=30.89 Aligned_cols=44 Identities=27% Similarity=0.658 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHh---CC----C-----Cccccccccc----cccCccccccchhh
Q 039016 16 PWTPEEDQKLLAFIEQH---GH----G-----SWRALPAKAG----LQRCGKSCRLRWIN 59 (367)
Q Consensus 16 ~WT~EEDe~L~~~V~~~---G~----~-----nW~~Ia~k~~----~~Rt~kqCr~RW~n 59 (367)
.||+++++.|+.++.+. |. + .|..|+..+. ...+.+||+.||..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 59999999999988655 21 1 2666655443 34455666666554
No 66
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=50.25 E-value=27 Score=30.76 Aligned_cols=45 Identities=7% Similarity=0.070 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 039016 73 QEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTK 118 (367)
Q Consensus 73 EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k 118 (367)
+-|..|+++.++-| ..|++||+.+ |-+...|+.|++.+....+.+
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~GvI~ 54 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGIIT 54 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 46777887777777 6899999999 999999999999887665543
No 67
>smart00595 MADF subfamily of SANT domain.
Probab=49.84 E-value=17 Score=28.55 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.8
Q ss_pred ChHHHhhhCCCCCHHHHHHHHHHHh
Q 039016 88 RWSAIAAHLPKRTDNEIKNYWNTHL 112 (367)
Q Consensus 88 kWskIA~~lpgRT~nq~KnRW~~~l 112 (367)
-|..||..| +-|..+|+.+|+.+.
T Consensus 29 aW~~Ia~~l-~~~~~~~~~kw~~LR 52 (89)
T smart00595 29 AWEEIAEEL-GLSVEECKKRWKNLR 52 (89)
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 499999999 449999999998764
No 68
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=49.18 E-value=35 Score=24.03 Aligned_cols=38 Identities=13% Similarity=0.269 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHH
Q 039016 73 QEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTH 111 (367)
Q Consensus 73 EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~ 111 (367)
+=|..|+++...-| -.|.+||+.+ |=|...|..|++.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 44777888877777 5699999999 99999999998754
No 69
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=48.94 E-value=33 Score=25.47 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHH
Q 039016 72 LQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWN 109 (367)
Q Consensus 72 ~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~ 109 (367)
.+.|+..|.++.+.|-.-.+||+++ +|+.+.|+++-+
T Consensus 6 t~~Eqaqid~m~qlG~s~~~isr~i-~RSr~~Ir~yl~ 42 (50)
T PF11427_consen 6 TDAEQAQIDVMHQLGMSLREISRRI-GRSRTCIRRYLK 42 (50)
T ss_dssp -HHHHHHHHHHHHTT--HHHHHHHH-T--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhchhHHHHHHHh-CccHHHHHHHhc
Confidence 3556667788889999999999999 999999988643
No 70
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=48.45 E-value=18 Score=39.27 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=44.6
Q ss_pred CcCCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 65 IKRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 65 ikrg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
...++|+.+|-.+.-......|.+.+.|+..+|.|...+||.++..--+++
T Consensus 407 ~~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~r~ 457 (584)
T KOG2009|consen 407 LETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEKRN 457 (584)
T ss_pred cccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhhcc
Confidence 345689999999999999999999999999999999999999887544433
No 71
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=47.16 E-value=38 Score=32.05 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHhhCCChHHHhhhC---CCCCHHHHHHHHHHHhh
Q 039016 69 KFSLQEEQTIIQLHALLGNRWSAIAAHL---PKRTDNEIKNYWNTHLK 113 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~GnkWskIA~~l---pgRT~nq~KnRW~~~lk 113 (367)
.|++.+|-+||.+|.. ++.-..|+.-+ -.-|-.+|..||+.++-
T Consensus 1 rW~~~DDl~Li~av~~-~~~L~~v~~gvkFS~~fT~~Ei~~RW~~lly 47 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQ-TNDLESVHLGVKFSCKFTLQEIEERWYALLY 47 (199)
T ss_pred CCCchhhHHHHHHHHH-hcCHHHHHccCCcCCcCcHHHHHHHHHHHHc
Confidence 4999999999998865 66666665443 33688999999998874
No 72
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=46.57 E-value=51 Score=29.69 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=38.9
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCChHHHhhhCC----CCCHHHHHHHHHHHh
Q 039016 66 KRGKFSLQEEQTIIQLHALLGNRWSAIAAHLP----KRTDNEIKNYWNTHL 112 (367)
Q Consensus 66 krg~WT~EED~~Lielv~~~GnkWskIA~~lp----gRT~nq~KnRW~~~l 112 (367)
.....|+.|...|..|+++||.++.++|.-.- -.|..||+.+...+.
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 34568999999999999999999999997653 389999988876654
No 73
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=43.94 E-value=31 Score=28.02 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhCCChHHHhhhCCCCCHHHHH
Q 039016 75 EQTIIQLHALLGNRWSAIAAHLPKRTDNEIK 105 (367)
Q Consensus 75 D~~Lielv~~~GnkWskIA~~lpgRT~nq~K 105 (367)
|+.|..+...+|..|..+|.+| |=|..+|.
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I~ 31 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDIY 31 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 5678889999999999999999 66666553
No 74
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=42.25 E-value=64 Score=28.28 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=33.6
Q ss_pred HHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhcCCC
Q 039016 76 QTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTKMGID 122 (367)
Q Consensus 76 ~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k~g~~ 122 (367)
+.++.|.-..|-...+||..| |-+...|+.+-..-+++-......+
T Consensus 125 r~v~~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~~~~~l~~~ 170 (172)
T PRK12523 125 RAAFLYNRLDGMGHAEIAERL-GVSVSRVRQYLAQGLRQCYIALYGE 170 (172)
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 334444445677899999999 9999999999887776655544443
No 75
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=42.19 E-value=56 Score=26.64 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 77 TIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 77 ~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
.++.++-..|-.+..||+.+ |=+...|+++.+..+++
T Consensus 117 ~ii~~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~k 153 (158)
T TIGR02937 117 EVLVLRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKK 153 (158)
T ss_pred HHHhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33444445688999999999 77999999988876644
No 76
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=41.29 E-value=40 Score=27.39 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhCCChHHHhhhCCCCCHHHHHH
Q 039016 75 EQTIIQLHALLGNRWSAIAAHLPKRTDNEIKN 106 (367)
Q Consensus 75 D~~Lielv~~~GnkWskIA~~lpgRT~nq~Kn 106 (367)
|..|..+...+|.+|.++|..| |=+..+|..
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~dI~~ 34 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDEINQ 34 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHHHHH
Confidence 6678888999999999999999 767666654
No 77
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=41.23 E-value=44 Score=27.83 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHhh----C----CChHHHhhhCCC-----CCHHHHHHHHHHHhhhh
Q 039016 68 GKFSLQEEQTIIQLHALL----G----NRWSAIAAHLPK-----RTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 68 g~WT~EED~~Lielv~~~----G----nkWskIA~~lpg-----RT~nq~KnRW~~~lkk~ 115 (367)
.-||+++|..|++.+..| | ..|..+..++.+ =+.+|+.++-+.+.++-
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky 65 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKY 65 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 359999999999998766 5 356555444422 37788888877766553
No 78
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=40.70 E-value=27 Score=28.25 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=10.0
Q ss_pred CCCcCCCCCHHHHHHHH
Q 039016 63 PDIKRGKFSLQEEQTII 79 (367)
Q Consensus 63 p~ikrg~WT~EED~~Li 79 (367)
|....|-||+|+|+.|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 55677889999999993
No 79
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=40.63 E-value=38 Score=30.24 Aligned_cols=46 Identities=4% Similarity=-0.046 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 039016 72 LQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTK 118 (367)
Q Consensus 72 ~EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k 118 (367)
.+-|.+|+.+.++-| -.|++||+.+ |=+...|..|++.+.+..+.+
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~GvI~ 59 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGFIQ 59 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 456777777776666 6799999999 999999999999887766543
No 80
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=39.79 E-value=9.5 Score=26.96 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccCccccccchhh
Q 039016 20 EEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWIN 59 (367)
Q Consensus 20 EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n 59 (367)
+=|.+|+..+.+.+...|.+||+.++ =+...|+.|+..
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lg--lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELG--LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHT--S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHC--cCHHHHHHHHHH
Confidence 45889999999999999999988877 667778877654
No 81
>PRK12532 RNA polymerase sigma factor; Provisional
Probab=37.73 E-value=77 Score=28.35 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=28.4
Q ss_pred HHHhhCCChHHHhhhCCCCCHHHHHHHHHHH---hhhhhhhcCC
Q 039016 81 LHALLGNRWSAIAAHLPKRTDNEIKNYWNTH---LKKRLTKMGI 121 (367)
Q Consensus 81 lv~~~GnkWskIA~~lpgRT~nq~KnRW~~~---lkk~l~k~g~ 121 (367)
|.-..|-.-..||..| |-+...|+.+.... +|+.+.+..+
T Consensus 147 L~~~~g~s~~EIA~~l-gis~~tVk~~l~Rar~~Lr~~l~~~~~ 189 (195)
T PRK12532 147 LKEILGFSSDEIQQMC-GISTSNYHTIMHRARESLRQCLQIKWF 189 (195)
T ss_pred hHHHhCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334567889999999 99999999887754 4455544443
No 82
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=37.63 E-value=13 Score=32.79 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCc
Q 039016 20 EEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIK 66 (367)
Q Consensus 20 EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ik 66 (367)
+-|.+|+++.++.|.-.|.+||.+++ -+...|+.|+.+....++-
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~lg--lS~~tV~~Ri~rL~~~GvI 53 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQFG--VSPGTIHVRVEKMKQAGII 53 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCe
Confidence 57999999999999999999988776 8888899999988766544
No 83
>PLN03162 golden-2 like transcription factor; Provisional
Probab=37.06 E-value=3e+02 Score=28.80 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---ChHHHhhhC--CCCCHHHHHHHHHHHh
Q 039016 67 RGKFSLQEEQTIIQLHALLGN---RWSAIAAHL--PKRTDNEIKNYWNTHL 112 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~Gn---kWskIA~~l--pgRT~nq~KnRW~~~l 112 (367)
|-.||+|=.+..++++.++|. .=++|-+.| +|=|...||.+.+.+.
T Consensus 237 RLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYR 287 (526)
T PLN03162 237 KVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYR 287 (526)
T ss_pred cccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 346999999999999999993 356676665 7889999999877654
No 84
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=36.43 E-value=74 Score=27.40 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=27.1
Q ss_pred HHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 78 IIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 78 Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
++.+.-..|-.+..||..| |.+...|+.+....+++
T Consensus 136 vl~l~~~~~~s~~eIA~~l-gis~~tV~~~l~ra~~~ 171 (182)
T PRK09652 136 AITLREIEGLSYEEIAEIM-GCPIGTVRSRIFRAREA 171 (182)
T ss_pred HHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3334444578999999999 88999999888765543
No 85
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=36.29 E-value=87 Score=27.61 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=28.4
Q ss_pred HHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 039016 80 QLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTK 118 (367)
Q Consensus 80 elv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k 118 (367)
.+.-..|-...+||..| |-+...|+.+....+++-...
T Consensus 141 ~l~~~~g~s~~eIA~~l-~is~~tV~~~l~ra~~~Lr~~ 178 (184)
T PRK12512 141 QSISVEGASIKETAAKL-SMSEGAVRVALHRGLAALAAK 178 (184)
T ss_pred HHHHHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHH
Confidence 33334577899999999 999999999988776554433
No 86
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=36.24 E-value=83 Score=24.99 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=26.2
Q ss_pred HHHHHHhhC--------CChHHHhhhCCC---CC--HHHHHHHHHHHhh
Q 039016 78 IIQLHALLG--------NRWSAIAAHLPK---RT--DNEIKNYWNTHLK 113 (367)
Q Consensus 78 Lielv~~~G--------nkWskIA~~lpg---RT--~nq~KnRW~~~lk 113 (367)
|..+|.+.| .+|..||..|.- -+ ..++|..|..+|.
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 41 LYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp HHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred HHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 666677776 469999999833 12 3688999988774
No 87
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=35.73 E-value=40 Score=26.87 Aligned_cols=31 Identities=23% Similarity=0.541 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhCCChHHHhhhCCCCCHHHHHH
Q 039016 75 EQTIIQLHALLGNRWSAIAAHLPKRTDNEIKN 106 (367)
Q Consensus 75 D~~Lielv~~~GnkWskIA~~lpgRT~nq~Kn 106 (367)
|..|..+.+..|.+|.++|.+| |=+..+|..
T Consensus 4 ~~~l~~ia~~lG~dW~~LAr~L-g~~~~dI~~ 34 (84)
T cd08317 4 DIRLADISNLLGSDWPQLAREL-GVSETDIDL 34 (84)
T ss_pred cchHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567788899999999999999 666665543
No 88
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=35.46 E-value=11 Score=33.70 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCc
Q 039016 19 PEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIK 66 (367)
Q Consensus 19 ~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ik 66 (367)
.+-|.+|+.+.++.|.-.|.+||.+++ -+...|+.|+++....++-
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lg--lS~~tv~~Ri~rL~~~GvI 58 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVG--LSPTPCLERVRRLERQGFI 58 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCe
Confidence 467999999999999999999988887 7777899999988766543
No 89
>PRK04217 hypothetical protein; Provisional
Probab=35.03 E-value=90 Score=26.75 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 69 KFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
..|.+| ..++.+....|-....||+.+ |-+...|+.+++...++.
T Consensus 42 ~Lt~ee-reai~l~~~eGlS~~EIAk~L-GIS~sTV~r~L~RArkkL 86 (110)
T PRK04217 42 FMTYEE-FEALRLVDYEGLTQEEAGKRM-GVSRGTVWRALTSARKKV 86 (110)
T ss_pred cCCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666 677788888889999999999 999999999998765443
No 90
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=34.45 E-value=1e+02 Score=27.29 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=30.7
Q ss_pred HHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 039016 79 IQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTK 118 (367)
Q Consensus 79 ielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k 118 (367)
+.|....|-...+||..| |-+...||.|....+++-+..
T Consensus 136 ~~L~~~~g~s~~EIA~~l-gis~~tVk~~l~rAl~~~~~~ 174 (178)
T PRK12529 136 FLMATLDGMKQKDIAQAL-DIALPTVKKYIHQAYVTCLSL 174 (178)
T ss_pred HHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHh
Confidence 334444577899999999 999999999998887766554
No 91
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=34.25 E-value=40 Score=25.67 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=20.9
Q ss_pred ChHHHhhhCCC-CCHHHHHHHHHHHhh
Q 039016 88 RWSAIAAHLPK-RTDNEIKNYWNTHLK 113 (367)
Q Consensus 88 kWskIA~~lpg-RT~nq~KnRW~~~lk 113 (367)
-|..||..|.. -+..+|+.+|+.+..
T Consensus 28 aw~~Ia~~l~~~~~~~~~~~~w~~Lr~ 54 (85)
T PF10545_consen 28 AWQEIARELGKEFSVDDCKKRWKNLRD 54 (85)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 49999999953 578899999987653
No 92
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=34.02 E-value=71 Score=27.44 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=24.9
Q ss_pred HhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 83 ALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 83 ~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
...|-....||..| |-+...|++++...+++
T Consensus 138 ~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~ 168 (179)
T PRK11924 138 YVEGLSYREIAEIL-GVPVGTVKSRLRRARQL 168 (179)
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34577899999999 89999999988765543
No 93
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=33.89 E-value=1e+02 Score=20.46 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHh
Q 039016 70 FSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHL 112 (367)
Q Consensus 70 WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~l 112 (367)
++++ +..++.+.-..|-.+..||..+ |=+...|+.+.+...
T Consensus 11 l~~~-~~~~~~~~~~~~~~~~~ia~~~-~~s~~~i~~~~~~~~ 51 (55)
T cd06171 11 LPER-EREVILLRFGEGLSYEEIAEIL-GISRSTVRQRLHRAL 51 (55)
T ss_pred CCHH-HHHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 4444 4555555556778899999998 788888877665543
No 94
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=33.57 E-value=75 Score=28.59 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=27.1
Q ss_pred HHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 78 IIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 78 Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
++.|.-..|-...+||..| |-+...|++|+...+++
T Consensus 142 i~~l~~~~g~s~~EIA~~l-g~s~~tV~~rl~rar~~ 177 (192)
T PRK09643 142 ALVAVDMQGYSVADAARML-GVAEGTVKSRCARGRAR 177 (192)
T ss_pred HHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3333344677899999999 99999999999655443
No 95
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=33.39 E-value=91 Score=25.07 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=26.8
Q ss_pred HHHHHHhhC--------CChHHHhhhCCCC-----CHHHHHHHHHHHhhh
Q 039016 78 IIQLHALLG--------NRWSAIAAHLPKR-----TDNEIKNYWNTHLKK 114 (367)
Q Consensus 78 Lielv~~~G--------nkWskIA~~lpgR-----T~nq~KnRW~~~lkk 114 (367)
|..+|.++| ++|..||..|.-. ...++|..|..+|..
T Consensus 37 Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 37 LYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred HHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 566666666 3799999998433 357888888887754
No 96
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=33.38 E-value=55 Score=26.41 Aligned_cols=28 Identities=36% Similarity=0.684 Sum_probs=22.0
Q ss_pred HHHHHHhhCCChHHHhhhCCCCCHHHHHH
Q 039016 78 IIQLHALLGNRWSAIAAHLPKRTDNEIKN 106 (367)
Q Consensus 78 Lielv~~~GnkWskIA~~lpgRT~nq~Kn 106 (367)
|..+....|.+|.++|..| |=+..+|..
T Consensus 10 l~~ia~~iG~~Wk~Lar~L-Gls~~dI~~ 37 (86)
T cd08318 10 ITVFANKLGEDWKTLAPHL-EMKDKEIRA 37 (86)
T ss_pred HHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3346688899999999999 777777743
No 97
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=32.66 E-value=20 Score=40.03 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=37.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchh
Q 039016 14 KGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWI 58 (367)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~ 58 (367)
.-.||+.|-.++.+++-.|. .+.-.| ++|.++++.+||-+-|.
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v-~km~~~KtVaqCVeyYY 661 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYS-KDFIFV-QKMVKSKTVAQCVEYYY 661 (907)
T ss_pred cccccHHHHHHHHHHHHHhc-ccHHHH-HHHhccccHHHHHHHHH
Confidence 46899999999999999998 488889 78888999999987654
No 98
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=32.45 E-value=1e+02 Score=27.77 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhh
Q 039016 74 EEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLK 113 (367)
Q Consensus 74 ED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lk 113 (367)
++..++++....|-.+.+||..| |-+...|+.+|.....
T Consensus 139 ~~~~~v~l~~~~Gls~~EIA~~l-giS~~tV~r~l~~aR~ 177 (185)
T PF07638_consen 139 RQRRVVELRFFEGLSVEEIAERL-GISERTVRRRLRRARA 177 (185)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 33445555555678999999999 9999999999987653
No 99
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=29.56 E-value=67 Score=25.06 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=23.0
Q ss_pred HHHHHHHHHHh-hCCChHHHhhhCCCCCHHHHH
Q 039016 74 EEQTIIQLHAL-LGNRWSAIAAHLPKRTDNEIK 105 (367)
Q Consensus 74 ED~~Lielv~~-~GnkWskIA~~lpgRT~nq~K 105 (367)
-.+.|..+... .|.+|..+|.+| |=+..+|.
T Consensus 4 ~~~~~~~l~~~~~g~~W~~la~~L-g~~~~~i~ 35 (88)
T smart00005 4 TREKLAKLLDHPLGLDWRELARKL-GLSEADID 35 (88)
T ss_pred HHHHHHHHHcCccchHHHHHHHHc-CCCHHHHH
Confidence 34566777777 899999999999 44555553
No 100
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=29.42 E-value=1.2e+02 Score=27.02 Aligned_cols=31 Identities=10% Similarity=-0.008 Sum_probs=25.0
Q ss_pred HhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 83 ALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 83 ~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
...|-....||..| |-+...|++++...+++
T Consensus 144 ~~~~~s~~eIA~~l-gis~~tV~~~l~Rar~~ 174 (189)
T PRK12515 144 YYHEKSVEEVGEIV-GIPESTVKTRMFYARKK 174 (189)
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34567899999999 88999999998765543
No 101
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=29.26 E-value=91 Score=36.36 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHhh
Q 039016 69 KFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHLK 113 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~lk 113 (367)
.|+..+=..+|.+..+|| .+-..||..|.++|..+|+.+-+....
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~ 871 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWE 871 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 488888888888889999 789999999999999999988776653
No 102
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=28.79 E-value=1.1e+02 Score=26.91 Aligned_cols=30 Identities=10% Similarity=0.007 Sum_probs=24.4
Q ss_pred hhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 84 LLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 84 ~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
..|..+.+||..| |-+...|+++....+++
T Consensus 150 ~~~~s~~eIA~~l-gis~~~v~~~l~Rar~~ 179 (187)
T PRK09641 150 IEDLSLKEISEIL-DLPVGTVKTRIHRGREA 179 (187)
T ss_pred hhCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3567899999999 99999999988766544
No 103
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=28.65 E-value=71 Score=25.74 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhCCChHHHhhhCCCCCHHHHHH
Q 039016 75 EQTIIQLHALLGNRWSAIAAHLPKRTDNEIKN 106 (367)
Q Consensus 75 D~~Lielv~~~GnkWskIA~~lpgRT~nq~Kn 106 (367)
|..|-.+...+|.+|..+|..| |=+..+|..
T Consensus 4 ~~~l~~ia~~LG~dWk~LAr~L-g~se~dI~~ 34 (84)
T cd08804 4 EERLAVIADHLGFSWTELAREL-DFTEEQIHQ 34 (84)
T ss_pred hhHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 4567778899999999999999 777777765
No 104
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=28.53 E-value=1.2e+02 Score=25.93 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=25.5
Q ss_pred HHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 81 LHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 81 lv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
+....|-.-..||..| |-+...|+.+....+++
T Consensus 117 l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 149 (161)
T PRK09047 117 LRYWEDMDVAETAAAM-GCSEGSVKTHCSRATHA 149 (161)
T ss_pred HHHHhcCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3334567889999999 88999999998765543
No 105
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=28.53 E-value=1.4e+02 Score=25.84 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=26.0
Q ss_pred HHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 80 QLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 80 elv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
.|.-..|-.-.+||..| |.+...|+.+....+++
T Consensus 128 ~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 161 (173)
T PRK09645 128 VRSYYRGWSTAQIAADL-GIPEGTVKSRLHYALRA 161 (173)
T ss_pred HHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 33334567789999999 99999999998766543
No 106
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=27.74 E-value=1.2e+02 Score=26.23 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=25.0
Q ss_pred hhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 84 LLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 84 ~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
..|-....||..| |-|...|++++...+++-
T Consensus 133 ~~g~s~~eiA~~l-gis~~tv~~~l~Ra~~~L 163 (169)
T TIGR02954 133 YHDLTIKEIAEVM-NKPEGTVKTYLHRALKKL 163 (169)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3567889999999 889999999988776543
No 107
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Probab=27.04 E-value=1e+02 Score=27.09 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=24.3
Q ss_pred hCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 85 LGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 85 ~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
.|-....||..| |=|...|+++....+++-
T Consensus 153 ~~~s~~EIA~~l-gis~~tv~~~l~rar~~L 182 (190)
T TIGR02939 153 EGLSYEDIARIM-DCPVGTVRSRIFRAREAI 182 (190)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 456799999999 888999999987766543
No 108
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor. This sigma factor is restricted to certain lineages of the order Bacillales.
Probab=26.53 E-value=1e+02 Score=26.93 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=24.2
Q ss_pred hCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 85 LGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 85 ~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
.|-...+||..| |-+...|+++....+++-
T Consensus 151 ~g~s~~eIA~~l-gis~~~v~~~l~Rar~~L 180 (187)
T TIGR02948 151 EDLSLKEISEIL-DLPVGTVKTRIHRGREAL 180 (187)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 467789999999 889999999987666443
No 109
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=26.53 E-value=1.2e+02 Score=27.19 Aligned_cols=36 Identities=22% Similarity=0.111 Sum_probs=27.0
Q ss_pred HHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 78 IIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 78 Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
++.+.-..|-....||..| |-+...|+++....+++
T Consensus 114 i~~l~~~~g~~~~EIA~~l-gis~~tV~~~l~Rar~~ 149 (181)
T PRK09637 114 ALRLTELEGLSQKEIAEKL-GLSLSGAKSRVQRGRVK 149 (181)
T ss_pred HHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3333344677899999999 89999999998765543
No 110
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=26.21 E-value=88 Score=29.05 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 68 GKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 68 g~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
...|+.|-+.|.-+.+ |-.=+.||..| +.+..-||+|...+++|-
T Consensus 147 ~~LT~RE~eVL~lla~--G~snkeIA~~L-~iS~~TVk~h~~~i~~KL 191 (211)
T COG2197 147 ELLTPRELEVLRLLAE--GLSNKEIAEEL-NLSEKTVKTHVSNILRKL 191 (211)
T ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHH-CCCHhHHHHHHHHHHHHc
Confidence 3688888876655443 55567999999 999999999999888664
No 111
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=25.91 E-value=1.1e+02 Score=27.13 Aligned_cols=30 Identities=10% Similarity=0.092 Sum_probs=23.6
Q ss_pred hhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 84 LLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 84 ~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
..|-....||..| |-+...|+++....+++
T Consensus 152 ~~g~s~~eIA~~l-gis~~tv~~~l~Rar~~ 181 (193)
T PRK11923 152 FDGLSYEDIASVM-QCPVGTVRSRIFRAREA 181 (193)
T ss_pred hcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3456789999999 88899999998765543
No 112
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=25.83 E-value=77 Score=25.73 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=24.1
Q ss_pred HHHHHHHHhhCCChHHHhhhCCCCCHHHHHH
Q 039016 76 QTIIQLHALLGNRWSAIAAHLPKRTDNEIKN 106 (367)
Q Consensus 76 ~~Lielv~~~GnkWskIA~~lpgRT~nq~Kn 106 (367)
+.|-.+....|.+|..+|..| |=+..+|..
T Consensus 3 ~~l~~l~~~lG~~Wk~lar~L-G~s~~eI~~ 32 (86)
T cd08777 3 KHLDLLRENLGKKWKRCARKL-GFTESEIEE 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 345556688899999999999 788887766
No 113
>PRK09648 RNA polymerase sigma factor SigD; Reviewed
Probab=25.79 E-value=1.5e+02 Score=26.29 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=26.2
Q ss_pred HHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 81 LHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 81 lv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
+.-..|.....||..| |-+...|+.+....+++-
T Consensus 150 l~~~~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~L 183 (189)
T PRK09648 150 LRVVVGLSAEETAEAV-GSTPGAVRVAQHRALARL 183 (189)
T ss_pred HHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3334577899999999 888999999987666443
No 114
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=25.53 E-value=1.3e+02 Score=24.24 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 039016 73 QEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTK 118 (367)
Q Consensus 73 EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k 118 (367)
+.|..|+++....| -.++.||+.+ |-+...|..+.+.+.+..+.+
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~i~ 48 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGVIK 48 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 46777888877776 5799999999 999999999999887765443
No 115
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=24.76 E-value=1.6e+02 Score=25.24 Aligned_cols=31 Identities=16% Similarity=-0.002 Sum_probs=24.5
Q ss_pred HhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 83 ALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 83 ~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
-..|-.-..||..| |-+...|+++....+++
T Consensus 119 ~~~g~s~~EIA~~l-gis~~tV~~~l~Rar~~ 149 (160)
T PRK09642 119 YLEEKSYQEIALQE-KIEVKTVEMKLYRARKW 149 (160)
T ss_pred HHhCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34567789999999 99999999987755543
No 116
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=24.60 E-value=1.7e+02 Score=25.36 Aligned_cols=37 Identities=19% Similarity=0.043 Sum_probs=27.6
Q ss_pred HHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhh
Q 039016 79 IQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRL 116 (367)
Q Consensus 79 ielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~l 116 (367)
+.+....|-....||..| |-+...|+++-...+++-.
T Consensus 121 ~~l~~~~g~s~~eIA~~l-gis~~tV~~~l~Rar~~Lr 157 (164)
T PRK12547 121 IILIGASGFSYEDAAAIC-GCAVGTIKSRVSRARNRLQ 157 (164)
T ss_pred HHHHHHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 333344567899999999 8889999998877665443
No 117
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=24.57 E-value=89 Score=25.45 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhCCChHHHhhhCCCCCHHH
Q 039016 75 EQTIIQLHALLGNRWSAIAAHLPKRTDNE 103 (367)
Q Consensus 75 D~~Lielv~~~GnkWskIA~~lpgRT~nq 103 (367)
|..|..+...+|.+|.++|..| |=+..+
T Consensus 4 ~~~l~~Ia~~LG~dW~~Lar~L-~vs~~d 31 (84)
T cd08805 4 EMKMAVIREHLGLSWAELAREL-QFSVED 31 (84)
T ss_pred hhHHHHHHHHhcchHHHHHHHc-CCCHHH
Confidence 5567788899999999999998 444433
No 118
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=24.39 E-value=74 Score=25.71 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=19.1
Q ss_pred HHHHHHHHhhCCChHHHhhhC
Q 039016 76 QTIIQLHALLGNRWSAIAAHL 96 (367)
Q Consensus 76 ~~Lielv~~~GnkWskIA~~l 96 (367)
..|..+...+|.+|..+|.+|
T Consensus 3 ~~l~~ia~~LG~~Wk~lar~L 23 (86)
T cd08779 3 SNLLSIAGRLGLDWQAIGLHL 23 (86)
T ss_pred hHHHHHHHHHhHHHHHHHHHc
Confidence 457889999999999999999
No 119
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=23.99 E-value=1.5e+02 Score=26.62 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=27.1
Q ss_pred HHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 78 IIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 78 Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
++.+.-..|-....||..| |-+.+.||.|....+++
T Consensus 139 v~~l~~~~g~s~~EIA~~l-gis~~tvk~rl~Rar~~ 174 (188)
T TIGR02943 139 VFMMREVLGFESDEICQEL-EISTSNCHVLLYRARLS 174 (188)
T ss_pred HHHHHHHhCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3344444577899999999 99999999997766543
No 120
>PRK12531 RNA polymerase sigma factor; Provisional
Probab=23.85 E-value=1.7e+02 Score=26.29 Aligned_cols=32 Identities=13% Similarity=0.014 Sum_probs=25.0
Q ss_pred HhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 83 ALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 83 ~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
-..|-...+||..| |-+...|+.|....+++-
T Consensus 154 ~~eg~s~~EIA~~l-gis~~tVk~rl~ra~~~L 185 (194)
T PRK12531 154 YLEELPHQQVAEMF-DIPLGTVKSRLRLAVEKL 185 (194)
T ss_pred HHcCCCHHHHHHHh-CcCHHHHHHHHHHHHHHH
Confidence 33467789999999 999999999987666543
No 121
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=23.59 E-value=1.5e+02 Score=26.63 Aligned_cols=29 Identities=7% Similarity=-0.054 Sum_probs=24.0
Q ss_pred hhCCChHHHhhhCCCCCHHHHHHHHHHHhh
Q 039016 84 LLGNRWSAIAAHLPKRTDNEIKNYWNTHLK 113 (367)
Q Consensus 84 ~~GnkWskIA~~lpgRT~nq~KnRW~~~lk 113 (367)
..|-....||..| |-+...||.|....++
T Consensus 148 ~~g~s~~EIA~~l-gis~~tVk~~l~RAr~ 176 (189)
T PRK12530 148 YLELSSEQICQEC-DISTSNLHVLLYRARL 176 (189)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3567899999999 9999999999775543
No 122
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=23.41 E-value=2e+02 Score=25.67 Aligned_cols=31 Identities=19% Similarity=0.095 Sum_probs=25.6
Q ss_pred hhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 84 LLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 84 ~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
..|-.-.+||..| |-+...||.+....+++-
T Consensus 144 ~~g~s~~EIA~~l-gis~~tVk~~l~Rar~~L 174 (185)
T PRK09649 144 LLGLSYADAAAVC-GCPVGTIRSRVARARDAL 174 (185)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3566789999999 999999999988776544
No 123
>PRK12514 RNA polymerase sigma factor; Provisional
Probab=23.14 E-value=1.7e+02 Score=25.56 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=24.1
Q ss_pred hCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 85 LGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 85 ~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
.|-.-..||..| |.+...|+.+....+++
T Consensus 144 ~g~s~~eIA~~l-gis~~tV~~~l~Rar~~ 172 (179)
T PRK12514 144 EGLSYKELAERH-DVPLNTMRTWLRRSLLK 172 (179)
T ss_pred cCCCHHHHHHHH-CCChHHHHHHHHHHHHH
Confidence 466789999999 99999999998766544
No 124
>COG2963 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=23.07 E-value=2.2e+02 Score=23.46 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCC-CHHHHHHHHHHHh
Q 039016 67 RGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKR-TDNEIKNYWNTHL 112 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~GnkWskIA~~lpgR-T~nq~KnRW~~~l 112 (367)
+..||.|.-..+++++..-|..=+.||+.+ |- ..+++...++.+.
T Consensus 5 ~r~~s~EfK~~iv~~~~~~g~sv~~vAr~~-gv~~~~~l~~W~~~~~ 50 (116)
T COG2963 5 RKKYSPEFKLEAVALYLRGGDTVSEVAREF-GIVSATQLYKWRIQLQ 50 (116)
T ss_pred cccCCHHHHHHHHHHHHhcCccHHHHHHHh-CCCChHHHHHHHHHHH
Confidence 568999999999999999999899999999 75 6666666555444
No 125
>PRK12524 RNA polymerase sigma factor; Provisional
Probab=22.01 E-value=1.6e+02 Score=26.37 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=25.7
Q ss_pred HHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 79 IQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 79 ielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
+.|....|-.+.+||..| |=+...|+++-...+++
T Consensus 145 ~~L~~~~g~s~~eIA~~l-gis~~tV~~~l~Ra~~~ 179 (196)
T PRK12524 145 VVLRHIEGLSNPEIAEVM-EIGVEAVESLTARGKRA 179 (196)
T ss_pred HHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 333344567899999999 88888888887765543
No 126
>TIGR02999 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in a variety of species including Rhodopirellula baltica which encodes a paralogous group of five.
Probab=21.78 E-value=1.8e+02 Score=25.50 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=25.3
Q ss_pred HHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 82 HALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 82 v~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
.-..|-....||..| |-+...||.|....+++
T Consensus 146 ~~~~g~s~~EIA~~l-gis~~tVk~~l~Rar~~ 177 (183)
T TIGR02999 146 RFFAGLTVEEIAELL-GVSVRTVERDWRFARAW 177 (183)
T ss_pred HHHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 334567789999999 99999999998766544
No 127
>PRK12528 RNA polymerase sigma factor; Provisional
Probab=21.49 E-value=1.9e+02 Score=24.89 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=26.9
Q ss_pred HHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 78 IIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 78 Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
++.|.-..|-...+||..+ |-+...|+.|....+++
T Consensus 121 v~~L~~~~g~s~~EIA~~l-~is~~tV~~~l~ra~~~ 156 (161)
T PRK12528 121 AFLLAQVDGLGYGEIATEL-GISLATVKRYLNKAAMR 156 (161)
T ss_pred HHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3334444677899999999 89999999988766543
No 128
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=20.85 E-value=1.2e+02 Score=32.47 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHhhCCChHHHh-hhCCCCCHHHHHHHHH
Q 039016 69 KFSLQEEQTIIQLHALLGNRWSAIA-AHLPKRTDNEIKNYWN 109 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~GnkWskIA-~~lpgRT~nq~KnRW~ 109 (367)
.|+..|-.+.-++.++||.++..|- .+||-++-..|-.+|+
T Consensus 287 EWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYY 328 (693)
T KOG3554|consen 287 EWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYY 328 (693)
T ss_pred hccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHH
Confidence 6999999999999999999999996 6679999999988765
No 129
>PRK09651 RNA polymerase sigma factor FecI; Provisional
Probab=20.55 E-value=1.5e+02 Score=25.92 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=24.6
Q ss_pred hhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 84 LLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 84 ~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
..|-...+||+.| |-+...|+++....+++
T Consensus 133 ~~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~ 162 (172)
T PRK09651 133 LDGLTYSEIAHKL-GVSVSSVKKYVAKATEH 162 (172)
T ss_pred ccCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3466799999999 99999999998766644
No 130
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=20.50 E-value=1.8e+02 Score=28.14 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=25.4
Q ss_pred hhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 84 LLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 84 ~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
..|-.-.+||..| |.+...||+|....+++-
T Consensus 156 ~~g~s~~EIA~~l-gis~~tV~~~l~Rar~~L 186 (324)
T TIGR02960 156 VLGWRAAETAELL-GTSTASVNSALQRARATL 186 (324)
T ss_pred HhCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 4567889999999 999999999987766443
No 131
>PRK12537 RNA polymerase sigma factor; Provisional
Probab=20.37 E-value=2.2e+02 Score=25.14 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=24.7
Q ss_pred hhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 84 LLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 84 ~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
..|-.-..||..| |-+...|+++....+++-
T Consensus 147 ~~~~s~~eIA~~l-gis~~tV~~~l~ra~~~L 177 (182)
T PRK12537 147 VDGCSHAEIAQRL-GAPLGTVKAWIKRSLKAL 177 (182)
T ss_pred HcCCCHHHHHHHH-CCChhhHHHHHHHHHHHH
Confidence 3466789999999 899999999988777543
No 132
>TIGR02950 SigM_subfam RNA polymerase sigma factor, SigM family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot: SIGM_BACSU) and is activated by various stressors.
Probab=20.14 E-value=69 Score=27.13 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=23.6
Q ss_pred CCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 86 GNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 86 GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
|-.+..||..| |-+...|+++.....++
T Consensus 121 g~s~~eIA~~l-gis~~tv~~~l~Ra~~~ 148 (154)
T TIGR02950 121 EFSYKEIAELL-NLSLAKVKSNLFRARKE 148 (154)
T ss_pred cCcHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 45799999999 89999999998876644
No 133
>PRK13919 putative RNA polymerase sigma E protein; Provisional
Probab=20.04 E-value=2.2e+02 Score=24.94 Aligned_cols=30 Identities=17% Similarity=0.047 Sum_probs=24.2
Q ss_pred hCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 85 LGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 85 ~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
.|-.-.+||..+ |-+...|+.+.+..+++-
T Consensus 150 ~~~s~~eIA~~l-gis~~~V~~~l~ra~~~L 179 (186)
T PRK13919 150 QGYTHREAAQLL-GLPLGTLKTRARRALSRL 179 (186)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 456789999999 999999999988766543
Done!