Query 039016
Match_columns 367
No_of_seqs 247 out of 1510
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 08:47:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 4E-33 1.4E-37 230.6 9.7 105 11-116 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 1.4E-32 4.7E-37 236.5 11.6 113 14-127 2-114 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 9.2E-33 3.1E-37 230.0 8.6 104 14-118 1-104 (107)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 3.1E-32 1.1E-36 233.0 8.6 109 7-116 20-128 (128)
5 3osg_A MYB21; transcription-DN 100.0 7E-32 2.4E-36 230.8 9.8 106 8-115 5-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 5.3E-30 1.8E-34 226.5 7.5 108 8-116 52-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.1E-29 3.7E-34 224.5 5.8 107 11-118 3-110 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.8 1.7E-20 5.7E-25 160.2 5.6 77 42-118 2-79 (128)
9 2dim_A Cell division cycle 5-l 99.8 3.9E-21 1.3E-25 148.5 1.5 67 8-75 3-69 (70)
10 2llk_A Cyclin-D-binding MYB-li 99.7 4.7E-18 1.6E-22 133.3 5.2 59 53-112 9-67 (73)
11 2juh_A Telomere binding protei 99.7 4.1E-18 1.4E-22 145.4 2.7 83 9-91 12-103 (121)
12 2cu7_A KIAA1915 protein; nucle 99.7 4.9E-17 1.7E-21 126.4 8.1 65 61-126 3-67 (72)
13 1ign_A Protein (RAP1); RAP1,ye 99.7 2.6E-17 8.8E-22 154.3 6.8 106 9-115 3-200 (246)
14 2din_A Cell division cycle 5-l 99.7 8.4E-17 2.9E-21 122.8 7.1 60 60-120 2-61 (66)
15 2roh_A RTBP1, telomere binding 99.7 4.3E-17 1.5E-21 139.3 4.1 80 9-88 26-114 (122)
16 2dim_A Cell division cycle 5-l 99.6 3.3E-16 1.1E-20 120.8 6.6 64 62-125 4-68 (70)
17 2d9a_A B-MYB, MYB-related prot 99.6 9.3E-17 3.2E-21 120.3 3.0 57 9-66 3-59 (60)
18 1gvd_A MYB proto-oncogene prot 99.6 1.1E-16 3.9E-21 116.6 3.0 52 12-64 1-52 (52)
19 2d9a_A B-MYB, MYB-related prot 99.6 4.9E-16 1.7E-20 116.3 5.7 55 62-116 3-58 (60)
20 1ity_A TRF1; helix-turn-helix, 99.6 2.7E-16 9.2E-21 121.1 3.0 63 9-71 5-68 (69)
21 1guu_A C-MYB, MYB proto-oncoge 99.6 2.2E-16 7.5E-21 114.9 2.2 52 12-64 1-52 (52)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 2E-15 7E-20 109.8 6.2 50 65-114 1-51 (52)
23 1ity_A TRF1; helix-turn-helix, 99.6 3.2E-15 1.1E-19 115.1 7.4 61 60-120 3-66 (69)
24 1gvd_A MYB proto-oncogene prot 99.6 3.8E-15 1.3E-19 108.4 6.0 50 65-114 1-51 (52)
25 3sjm_A Telomeric repeat-bindin 99.5 8.2E-16 2.8E-20 117.4 1.9 56 11-66 8-64 (64)
26 1w0t_A Telomeric repeat bindin 99.5 7.7E-15 2.6E-19 107.4 6.5 49 66-114 1-52 (53)
27 1x41_A Transcriptional adaptor 99.5 8.2E-15 2.8E-19 110.0 6.3 53 62-114 3-56 (60)
28 2yum_A ZZZ3 protein, zinc fing 99.5 1.5E-14 5.3E-19 112.8 6.5 57 62-118 3-65 (75)
29 1x41_A Transcriptional adaptor 99.5 3.7E-15 1.3E-19 111.9 2.3 55 9-64 3-57 (60)
30 1w0t_A Telomeric repeat bindin 99.5 5.4E-15 1.8E-19 108.2 1.9 50 13-62 1-51 (53)
31 3sjm_A Telomeric repeat-bindin 99.5 5.1E-14 1.7E-18 107.5 6.5 51 65-115 9-62 (64)
32 2din_A Cell division cycle 5-l 99.5 3.6E-15 1.2E-19 113.7 -0.5 60 7-69 2-61 (66)
33 2elk_A SPCC24B10.08C protein; 99.5 1.3E-14 4.3E-19 108.5 2.2 52 10-61 5-56 (58)
34 2elk_A SPCC24B10.08C protein; 99.5 8.1E-14 2.8E-18 104.1 6.6 50 63-112 5-56 (58)
35 2ltp_A Nuclear receptor corepr 99.2 5.5E-15 1.9E-19 119.5 0.0 56 60-115 9-64 (89)
36 2yum_A ZZZ3 protein, zinc fing 99.5 9.2E-15 3.2E-19 114.0 1.0 61 8-69 2-67 (75)
37 2aje_A Telomere repeat-binding 99.4 1.1E-13 3.7E-18 115.5 4.1 79 9-87 8-95 (105)
38 2cqr_A RSGI RUH-043, DNAJ homo 99.4 6.6E-13 2.3E-17 104.0 6.0 51 63-113 14-68 (73)
39 1gv2_A C-MYB, MYB proto-oncoge 99.4 5E-13 1.7E-17 109.9 5.4 53 64-116 1-54 (105)
40 2ckx_A NGTRF1, telomere bindin 99.4 3.4E-13 1.2E-17 108.0 4.2 70 15-84 1-79 (83)
41 3osg_A MYB21; transcription-DN 99.4 6.9E-13 2.4E-17 113.0 6.3 62 62-123 6-67 (126)
42 2cu7_A KIAA1915 protein; nucle 99.4 1.1E-13 3.6E-18 107.5 1.0 58 8-67 3-60 (72)
43 2llk_A Cyclin-D-binding MYB-li 99.3 8.1E-13 2.8E-17 103.5 2.7 61 3-67 12-72 (73)
44 2yus_A SWI/SNF-related matrix- 99.3 2.7E-12 9.1E-17 101.8 4.7 48 64-111 15-62 (79)
45 2k9n_A MYB24; R2R3 domain, DNA 99.3 3.6E-12 1.2E-16 105.6 5.4 56 67-122 1-57 (107)
46 2cjj_A Radialis; plant develop 99.2 1.2E-11 4E-16 101.1 7.0 59 66-124 7-70 (93)
47 3zqc_A MYB3; transcription-DNA 99.2 6E-12 2E-16 107.7 5.3 56 67-122 2-58 (131)
48 1x58_A Hypothetical protein 49 99.2 1.2E-11 4.2E-16 93.8 6.3 50 65-114 6-58 (62)
49 2ckx_A NGTRF1, telomere bindin 99.2 1.5E-11 5E-16 98.5 6.7 48 68-115 1-53 (83)
50 1ign_A Protein (RAP1); RAP1,ye 99.2 6.7E-12 2.3E-16 117.7 5.4 55 63-117 4-64 (246)
51 2juh_A Telomere binding protei 99.2 1.2E-11 4E-16 105.6 6.3 55 61-115 11-70 (121)
52 2yus_A SWI/SNF-related matrix- 99.2 5.6E-12 1.9E-16 100.0 3.3 53 7-61 11-63 (79)
53 2aje_A Telomere repeat-binding 99.2 4E-11 1.4E-15 99.9 8.0 53 63-115 9-66 (105)
54 2ltp_A Nuclear receptor corepr 98.7 5.9E-12 2E-16 101.7 0.0 54 8-63 10-63 (89)
55 2roh_A RTBP1, telomere binding 99.1 8.2E-11 2.8E-15 100.5 6.6 53 63-115 27-84 (122)
56 2cqr_A RSGI RUH-043, DNAJ homo 99.1 2.2E-11 7.4E-16 95.4 1.2 55 7-62 11-68 (73)
57 3hm5_A DNA methyltransferase 1 99.0 1.1E-09 3.6E-14 89.5 6.9 65 51-119 18-87 (93)
58 2cqq_A RSGI RUH-037, DNAJ homo 98.9 9.1E-10 3.1E-14 85.9 6.0 59 64-123 5-67 (72)
59 2eqr_A N-COR1, N-COR, nuclear 98.9 1E-09 3.5E-14 82.6 6.1 48 66-113 11-58 (61)
60 2cjj_A Radialis; plant develop 98.7 1.7E-09 5.7E-14 88.3 0.8 48 13-61 7-57 (93)
61 2iw5_B Protein corest, REST co 98.6 2.7E-08 9.3E-13 92.7 6.3 49 66-114 132-180 (235)
62 1x58_A Hypothetical protein 49 98.5 2.4E-08 8.1E-13 75.7 1.8 51 12-63 6-58 (62)
63 1wgx_A KIAA1903 protein; MYB D 98.4 1.8E-07 6.2E-12 73.1 5.0 48 67-114 8-59 (73)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.3 1.1E-07 3.9E-12 74.0 1.1 50 11-62 5-57 (72)
65 1fex_A TRF2-interacting telome 98.3 1.3E-07 4.4E-12 71.0 1.3 49 14-62 2-58 (59)
66 2eqr_A N-COR1, N-COR, nuclear 98.3 2.7E-07 9.2E-12 69.3 2.4 51 8-60 6-56 (61)
67 1fex_A TRF2-interacting telome 98.2 1.2E-06 4.2E-11 65.6 5.0 47 67-113 2-58 (59)
68 2xag_B REST corepressor 1; ami 98.2 8.2E-07 2.8E-11 90.9 5.2 46 68-113 381-426 (482)
69 2yqk_A Arginine-glutamic acid 98.1 3.9E-06 1.3E-10 63.4 6.3 52 62-113 4-56 (63)
70 1ug2_A 2610100B20RIK gene prod 97.9 1.1E-05 3.6E-10 65.4 5.5 46 69-114 35-83 (95)
71 1wgx_A KIAA1903 protein; MYB D 97.9 2.1E-06 7E-11 67.2 1.2 48 14-62 8-58 (73)
72 4eef_G F-HB80.4, designed hema 97.9 2.3E-06 7.9E-11 66.8 1.0 43 67-109 20-66 (74)
73 4iej_A DNA methyltransferase 1 97.9 2.7E-05 9.3E-10 63.4 7.0 61 55-119 22-87 (93)
74 2iw5_B Protein corest, REST co 97.8 8.6E-06 2.9E-10 76.0 2.4 49 12-62 131-179 (235)
75 2lr8_A CAsp8-associated protei 96.9 4E-06 1.4E-10 64.5 0.0 44 69-113 16-62 (70)
76 4a69_C Nuclear receptor corepr 97.6 9.9E-05 3.4E-09 60.0 6.2 46 67-112 43-88 (94)
77 1ofc_X ISWI protein; nuclear p 97.6 0.0001 3.5E-09 71.6 7.4 100 15-115 111-276 (304)
78 2crg_A Metastasis associated p 97.6 0.00013 4.4E-09 56.2 6.4 46 67-112 8-54 (70)
79 4eef_G F-HB80.4, designed hema 97.3 4E-05 1.4E-09 59.9 0.7 44 14-58 20-66 (74)
80 2yqk_A Arginine-glutamic acid 97.1 0.00025 8.6E-09 53.4 2.6 51 8-59 3-53 (63)
81 2ebi_A DNA binding protein GT- 96.9 0.00086 2.9E-08 52.9 4.6 48 67-114 4-65 (86)
82 2xag_B REST corepressor 1; ami 96.5 0.00078 2.7E-08 69.0 2.3 47 13-61 379-425 (482)
83 2ebi_A DNA binding protein GT- 96.5 0.00021 7.2E-09 56.4 -1.8 49 13-61 3-63 (86)
84 3hm5_A DNA methyltransferase 1 96.3 0.0011 3.8E-08 53.9 1.6 49 12-61 28-80 (93)
85 2crg_A Metastasis associated p 95.8 0.0032 1.1E-07 48.3 1.8 46 13-59 7-52 (70)
86 2y9y_A Imitation switch protei 95.7 0.022 7.4E-07 56.7 8.0 103 15-117 124-294 (374)
87 2lr8_A CAsp8-associated protei 94.3 0.0031 1.1E-07 48.5 0.0 47 14-62 14-62 (70)
88 4a69_C Nuclear receptor corepr 95.1 0.0064 2.2E-07 49.2 1.5 43 14-58 43-85 (94)
89 1ug2_A 2610100B20RIK gene prod 94.9 0.0057 1.9E-07 49.5 0.5 45 15-60 34-80 (95)
90 4b4c_A Chromodomain-helicase-D 94.1 0.037 1.3E-06 49.8 4.0 37 4-40 124-160 (211)
91 1ofc_X ISWI protein; nuclear p 93.7 0.11 3.6E-06 50.5 6.7 47 68-114 111-158 (304)
92 1irz_A ARR10-B; helix-turn-hel 93.5 0.22 7.7E-06 37.7 6.7 48 65-112 5-57 (64)
93 4b4c_A Chromodomain-helicase-D 90.9 0.31 1E-05 43.7 5.6 49 66-114 6-59 (211)
94 4iej_A DNA methyltransferase 1 89.6 0.12 4.2E-06 41.9 1.6 49 12-61 28-80 (93)
95 2xb0_X Chromo domain-containin 88.3 0.33 1.1E-05 46.2 3.9 26 15-40 169-194 (270)
96 1irz_A ARR10-B; helix-turn-hel 78.1 1 3.5E-05 34.0 2.1 49 11-60 4-56 (64)
97 2xb0_X Chromo domain-containin 72.2 7.7 0.00026 36.8 6.9 47 67-113 3-54 (270)
98 2y9y_A Imitation switch protei 64.7 11 0.00037 37.5 6.4 46 68-113 124-171 (374)
99 3hug_A RNA polymerase sigma fa 56.2 21 0.00072 27.1 5.6 41 73-114 40-80 (92)
100 2o8x_A Probable RNA polymerase 56.1 18 0.00063 25.4 4.9 42 73-115 18-59 (70)
101 1ku3_A Sigma factor SIGA; heli 53.8 16 0.00056 26.5 4.4 42 73-115 13-58 (73)
102 2rq5_A Protein jumonji; develo 50.6 4.2 0.00014 34.1 0.6 46 35-83 64-113 (121)
103 2p7v_B Sigma-70, RNA polymeras 49.3 16 0.00056 26.1 3.7 42 73-115 8-53 (68)
104 2li6_A SWI/SNF chromatin-remod 45.9 4.1 0.00014 33.5 -0.1 39 24-63 53-98 (116)
105 1ig6_A MRF-2, modulator recogn 38.9 7.5 0.00026 31.3 0.4 42 23-64 36-88 (107)
106 2li6_A SWI/SNF chromatin-remod 38.0 23 0.00079 28.9 3.3 37 78-114 54-98 (116)
107 2kk0_A AT-rich interactive dom 37.8 13 0.00043 31.8 1.7 58 24-81 68-138 (145)
108 1x3u_A Transcriptional regulat 37.6 66 0.0022 23.1 5.5 42 70-114 17-58 (79)
109 2lm1_A Lysine-specific demethy 36.7 50 0.0017 26.2 5.1 37 78-114 49-97 (107)
110 3ulq_B Transcriptional regulat 36.6 64 0.0022 24.8 5.5 46 66-114 26-71 (90)
111 1u78_A TC3 transposase, transp 35.5 1.6E+02 0.0054 23.1 8.0 89 15-108 5-100 (141)
112 2jrz_A Histone demethylase jar 35.1 45 0.0015 27.2 4.6 37 78-114 45-93 (117)
113 2jrz_A Histone demethylase jar 35.0 6.8 0.00023 32.3 -0.5 40 24-63 44-93 (117)
114 2yqf_A Ankyrin-1; death domain 34.0 55 0.0019 26.2 4.9 35 71-106 14-48 (111)
115 1or7_A Sigma-24, RNA polymeras 33.6 61 0.0021 26.9 5.4 37 78-115 148-184 (194)
116 3c57_A Two component transcrip 33.5 63 0.0021 24.8 5.0 44 69-115 27-70 (95)
117 1c20_A DEAD ringer protein; DN 33.3 7.3 0.00025 32.5 -0.5 40 24-63 56-106 (128)
118 2cxy_A BAF250B subunit, HBAF25 33.0 7.3 0.00025 32.4 -0.6 40 24-63 55-104 (125)
119 1je8_A Nitrate/nitrite respons 32.6 64 0.0022 24.0 4.8 43 69-114 21-63 (82)
120 2cxy_A BAF250B subunit, HBAF25 32.2 64 0.0022 26.6 5.1 37 78-114 56-104 (125)
121 1tty_A Sigma-A, RNA polymerase 32.0 55 0.0019 24.6 4.4 42 73-115 21-66 (87)
122 2eqy_A RBP2 like, jumonji, at 31.3 58 0.002 26.8 4.7 37 78-114 47-95 (122)
123 2lm1_A Lysine-specific demethy 30.5 7.8 0.00027 31.1 -0.8 41 23-63 47-97 (107)
124 1kkx_A Transcription regulator 30.5 36 0.0012 28.2 3.3 37 78-114 53-97 (123)
125 2q1z_A RPOE, ECF SIGE; ECF sig 30.2 38 0.0013 28.0 3.5 32 83-115 148-179 (184)
126 1fse_A GERE; helix-turn-helix 30.0 80 0.0027 22.1 4.8 44 68-114 10-53 (74)
127 2eqy_A RBP2 like, jumonji, at 29.5 10 0.00034 31.5 -0.4 40 24-63 46-95 (122)
128 2jpc_A SSRB; DNA binding prote 29.3 85 0.0029 21.3 4.7 38 75-114 3-40 (61)
129 1xsv_A Hypothetical UPF0122 pr 26.1 96 0.0033 24.7 5.1 41 73-114 28-68 (113)
130 2of5_H Leucine-rich repeat and 25.8 66 0.0023 26.1 4.1 31 75-106 13-43 (118)
131 2kk0_A AT-rich interactive dom 25.0 87 0.003 26.5 4.8 37 78-114 69-118 (145)
132 3mzy_A RNA polymerase sigma-H 24.7 76 0.0026 25.2 4.3 31 83-114 121-151 (164)
133 1rp3_A RNA polymerase sigma fa 24.6 91 0.0031 26.6 5.0 40 74-114 191-230 (239)
134 2jxj_A Histone demethylase jar 23.8 40 0.0014 26.3 2.3 36 78-113 41-88 (96)
135 3cz6_A DNA-binding protein RAP 23.8 47 0.0016 29.4 2.9 23 11-33 111-141 (168)
136 2rnj_A Response regulator prot 23.5 82 0.0028 23.7 4.0 43 69-114 29-71 (91)
137 2of5_A Death domain-containing 23.2 80 0.0027 25.7 4.1 38 65-106 17-54 (114)
138 2o71_A Death domain-containing 23.1 85 0.0029 25.6 4.2 35 68-106 20-54 (115)
139 3i4p_A Transcriptional regulat 22.9 72 0.0025 26.7 3.9 45 73-118 3-48 (162)
140 1c20_A DEAD ringer protein; DN 22.8 1.2E+02 0.0041 24.9 5.2 37 78-114 57-106 (128)
141 1tc3_C Protein (TC3 transposas 22.2 1.5E+02 0.0051 18.3 5.4 38 69-108 5-42 (51)
142 1wxp_A THO complex subunit 1; 22.1 98 0.0033 24.7 4.4 31 75-106 18-48 (110)
143 2rq5_A Protein jumonji; develo 20.9 99 0.0034 25.6 4.2 75 14-114 7-96 (121)
144 3cz6_A DNA-binding protein RAP 20.6 62 0.0021 28.6 3.0 47 63-115 110-156 (168)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.98 E-value=4e-33 Score=230.62 Aligned_cols=105 Identities=43% Similarity=0.864 Sum_probs=98.1
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHHHHHhhCCChH
Q 039016 11 GLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLGNRWS 90 (367)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~GnkWs 90 (367)
.++||+||+|||++|+++|++||.++|..||..+ ++|+++||++||.++|+|.+++++||+|||++|++++++||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh-cCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 4789999999999999999999988999996655 599999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHhhhhh
Q 039016 91 AIAAHLPKRTDNEIKNYWNTHLKKRL 116 (367)
Q Consensus 91 kIA~~lpgRT~nq~KnRW~~~lkk~l 116 (367)
.||++|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998763
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=1.4e-32 Score=236.48 Aligned_cols=113 Identities=34% Similarity=0.646 Sum_probs=104.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHHHHHhhCCChHHHh
Q 039016 14 KGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIA 93 (367)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~GnkWskIA 93 (367)
||+||+|||++|+++|.+||.++|..||..+ ++|+++||++||.+||+|.+++++||+|||++|++++.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL-PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC-TTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH-CCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 7999999999999999999999999996666 599999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCCC
Q 039016 94 AHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHK 127 (367)
Q Consensus 94 ~~lpgRT~nq~KnRW~~~lkk~l~k~g~~~~~~k 127 (367)
.+|||||+++|++||+.++++++...........
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~ 114 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILL 114 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccC
Confidence 9999999999999999999999877655544333
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=9.2e-33 Score=229.98 Aligned_cols=104 Identities=31% Similarity=0.557 Sum_probs=98.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHHHHHhhCCChHHHh
Q 039016 14 KGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIA 93 (367)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~GnkWskIA 93 (367)
||+||+|||++|+++|++||.++|..||..++ +|+++||++||.+||+|.+++++||+|||.+|++++.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 78999999999999999999889999976665 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHhhhhhhh
Q 039016 94 AHLPKRTDNEIKNYWNTHLKKRLTK 118 (367)
Q Consensus 94 ~~lpgRT~nq~KnRW~~~lkk~l~k 118 (367)
++|||||+++||+||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999886554
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=3.1e-32 Score=233.04 Aligned_cols=109 Identities=40% Similarity=0.820 Sum_probs=100.8
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHHHHHhhC
Q 039016 7 CEKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLG 86 (367)
Q Consensus 7 ~~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~G 86 (367)
...|+++||+||+|||++|+++|++||.++|..||..+ ++|+++||++||.++|+|.+++++||+|||++|++++++||
T Consensus 20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 20 VLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp --CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS-SSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh-cCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence 34688999999999999999999999988999996655 59999999999999999999999999999999999999999
Q ss_pred CChHHHhhhCCCCCHHHHHHHHHHHhhhhh
Q 039016 87 NRWSAIAAHLPKRTDNEIKNYWNTHLKKRL 116 (367)
Q Consensus 87 nkWskIA~~lpgRT~nq~KnRW~~~lkk~l 116 (367)
++|++||++|||||+++||+||+.++++++
T Consensus 99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999998753
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=7e-32 Score=230.83 Aligned_cols=106 Identities=37% Similarity=0.641 Sum_probs=99.7
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHHHHHhhCC
Q 039016 8 EKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLGN 87 (367)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~Gn 87 (367)
.+.+.+||+||+|||++|+++|++||. +|..||..+ ++|+++||++||.++|+|.+++++||+|||++|++++++||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF-PNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC-TTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc-CCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999997 999996655 599999999999999999999999999999999999999999
Q ss_pred ChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 88 RWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 88 kWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
+|++||++|||||+++||+||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988664
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=5.3e-30 Score=226.45 Aligned_cols=108 Identities=42% Similarity=0.828 Sum_probs=101.1
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHHHHHhhCC
Q 039016 8 EKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLGN 87 (367)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~Gn 87 (367)
..|.+++++||+|||++|+++|++||.++|..||..+ ++|+++||+.||.++|+|.+++++||+|||.+|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS-TTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHc-CCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 4678999999999999999999999988899996555 699999999999999999999999999999999999999999
Q ss_pred ChHHHhhhCCCCCHHHHHHHHHHHhhhhh
Q 039016 88 RWSAIAAHLPKRTDNEIKNYWNTHLKKRL 116 (367)
Q Consensus 88 kWskIA~~lpgRT~nq~KnRW~~~lkk~l 116 (367)
+|++||++|||||+++||+||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=1.1e-29 Score=224.51 Aligned_cols=107 Identities=35% Similarity=0.710 Sum_probs=62.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHHHHHhhCC-Ch
Q 039016 11 GLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLGN-RW 89 (367)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~Gn-kW 89 (367)
+++|++||+|||++|+++|++||.++|..||+.+ ++|+++||++||.++|+|.+++++||+|||++|++++.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 3789999999999999999999999999997665 499999999999999999999999999999999999999995 79
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 039016 90 SAIAAHLPKRTDNEIKNYWNTHLKKRLTK 118 (367)
Q Consensus 90 skIA~~lpgRT~nq~KnRW~~~lkk~l~k 118 (367)
..||.+|||||+.||++||+.+|.+.+.+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 110 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKK 110 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccc
Confidence 99999999999999999999988655433
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.80 E-value=1.7e-20 Score=160.22 Aligned_cols=77 Identities=30% Similarity=0.638 Sum_probs=52.8
Q ss_pred cccccccCccccccchhhccCCCCcCCCCCHHHHHHHHHHHHhhCC-ChHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 039016 42 AKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHLKKRLTK 118 (367)
Q Consensus 42 ~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~Gn-kWskIA~~lpgRT~nq~KnRW~~~lkk~l~k 118 (367)
+.++++|+++||+.||.++|+|.+++++||+|||++|++++++||. +|.+||.+|||||+.||++||+.+|.+.+.+
T Consensus 2 a~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 2 EAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp --------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred ccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 3455699999999999999999999999999999999999999995 7999999999999999999999988655443
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.9e-21 Score=148.54 Aligned_cols=67 Identities=27% Similarity=0.562 Sum_probs=62.9
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHH
Q 039016 8 EKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEE 75 (367)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED 75 (367)
..+.+++++||+|||++|+++|++||.++|..||..+. +|+++|||+||.+||+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 45789999999999999999999999889999977665 99999999999999999999999999987
No 10
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-18 Score=133.30 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=47.5
Q ss_pred cccchhhccCCCCcCCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHh
Q 039016 53 CRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHL 112 (367)
Q Consensus 53 Cr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~l 112 (367)
..-||.++|+|++++++||+|||++|++++++||++|++||++| |||+++||+||+.+.
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999 999999999999654
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.69 E-value=4.1e-18 Score=145.45 Aligned_cols=83 Identities=19% Similarity=0.374 Sum_probs=77.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccc---ccccCccccccchhhccC-----CCCcCC-CCCHHHHHHHH
Q 039016 9 KVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKA---GLQRCGKSCRLRWINYLR-----PDIKRG-KFSLQEEQTII 79 (367)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~---~~~Rt~kqCr~RW~n~L~-----p~ikrg-~WT~EED~~Li 79 (367)
++..++++||+|||+.|+++|++||.|+|..|+... +++|++.+|++||.++|+ |.++++ +|+++|+..|+
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~ 91 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL 91 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence 457789999999999999999999999999997665 379999999999999998 999999 99999999999
Q ss_pred HHHHhhCCChHH
Q 039016 80 QLHALLGNRWSA 91 (367)
Q Consensus 80 elv~~~GnkWsk 91 (367)
++++.+||+|++
T Consensus 92 ~~h~~~gn~~~~ 103 (121)
T 2juh_A 92 AAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHccchhc
Confidence 999999999987
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.69 E-value=4.9e-17 Score=126.36 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=59.4
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCC
Q 039016 61 LRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTH 126 (367)
Q Consensus 61 L~p~ikrg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k~g~~~~~~ 126 (367)
+.|.+++++||+|||++|++++++||++|..||.+|||||++|||+||+.+++++++. ++++...
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence 5689999999999999999999999999999999999999999999999999988766 7766543
No 13
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.68 E-value=2.6e-17 Score=154.30 Aligned_cols=106 Identities=20% Similarity=0.283 Sum_probs=90.4
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCC-----ccccccccccccCccccccchhhccCCCCc-----------------
Q 039016 9 KVGLKKGPWTPEEDQKLLAFIEQHGHGS-----WRALPAKAGLQRCGKSCRLRWINYLRPDIK----------------- 66 (367)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~~G~~n-----W~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ik----------------- 66 (367)
...++|++||+|||++|+++|++||..+ |.+|| ++++||++.|||.||.++|++.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4567899999999999999999998643 99995 566799999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHh-h--------------------------------C---------------
Q 039016 67 ------------RGKFSLQEEQTIIQLHAL-L--------------------------------G--------------- 86 (367)
Q Consensus 67 ------------rg~WT~EED~~Lielv~~-~--------------------------------G--------------- 86 (367)
+..||.+||-.|+..+.+ | |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998876 1 1
Q ss_pred ----------CChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 87 ----------NRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 87 ----------nkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
..|..||+++|+||.+++|+||+.+++..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 17999999999999999999999888654
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=8.4e-17 Score=122.83 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=57.2
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhcC
Q 039016 60 YLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTKMG 120 (367)
Q Consensus 60 ~L~p~ikrg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k~g 120 (367)
||+|.+++++||+|||++|++++++||++|.+||. |+|||++|||+||+.++++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999988753
No 15
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.65 E-value=4.3e-17 Score=139.33 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=73.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccc---ccccCccccccchhhcc-----CCCCcCCCCCHHH-HHHHH
Q 039016 9 KVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKA---GLQRCGKSCRLRWINYL-----RPDIKRGKFSLQE-EQTII 79 (367)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~---~~~Rt~kqCr~RW~n~L-----~p~ikrg~WT~EE-D~~Li 79 (367)
+...++++||+|||+.|+++|++||.|+|..|+... +.+|++.+|++||.|++ .|.++++.|+++| +..|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 345679999999999999999999999999997654 27999999999999999 8999999999999 89999
Q ss_pred HHHHhhCCC
Q 039016 80 QLHALLGNR 88 (367)
Q Consensus 80 elv~~~Gnk 88 (367)
++++.||++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999975
No 16
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=120.83 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=59.9
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhcCCCCCC
Q 039016 62 RPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVT 125 (367)
Q Consensus 62 ~p~ikrg~WT~EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k~g~~~~~ 125 (367)
.|.+++++||+|||++|+++|++|| ++|.+||.+|++||+.||++||+.+|++.+++..|++..
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE 68 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence 4678999999999999999999999 899999999999999999999999999999988887654
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=9.3e-17 Score=120.29 Aligned_cols=57 Identities=30% Similarity=0.585 Sum_probs=52.6
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCc
Q 039016 9 KVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIK 66 (367)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ik 66 (367)
.|.++|++||+|||++|+++|.+||.++|..||..+ ++|+++||++||.+||+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC-SSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-cCCCHHHHHHHHHHHcCCccC
Confidence 468999999999999999999999988999996665 599999999999999999886
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.62 E-value=1.1e-16 Score=116.57 Aligned_cols=52 Identities=44% Similarity=0.912 Sum_probs=48.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCC
Q 039016 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPD 64 (367)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ 64 (367)
++|++||+|||++|+++|.+||.++|..||..+ ++|+++||+.||.+||+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence 589999999999999999999988999997665 5999999999999999985
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=4.9e-16 Score=116.33 Aligned_cols=55 Identities=24% Similarity=0.459 Sum_probs=51.7
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhh
Q 039016 62 RPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHLKKRL 116 (367)
Q Consensus 62 ~p~ikrg~WT~EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~lkk~l 116 (367)
.|.+++++||+|||++|++++.+|| ++|.+||.+|++||+.||++||+.+|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 4789999999999999999999999 699999999999999999999999997754
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.59 E-value=2.7e-16 Score=121.13 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=56.6
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccc-ccCccccccchhhccCCCCcCCCCC
Q 039016 9 KVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGL-QRCGKSCRLRWINYLRPDIKRGKFS 71 (367)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~-~Rt~kqCr~RW~n~L~p~ikrg~WT 71 (367)
++..++++||+|||++|+++|++||.++|..||..+.+ +|+++||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 46778999999999999999999998899999766654 9999999999999999999987653
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.59 E-value=2.2e-16 Score=114.95 Aligned_cols=52 Identities=37% Similarity=0.755 Sum_probs=46.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCC
Q 039016 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPD 64 (367)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ 64 (367)
+++++||+|||++|+++|++||.++|..||..+ ++|+++||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS-TTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence 579999999999999999999988999997665 4999999999999999985
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.58 E-value=2e-15 Score=109.79 Aligned_cols=50 Identities=26% Similarity=0.562 Sum_probs=46.2
Q ss_pred CcCCCCCHHHHHHHHHHHHhhCC-ChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 65 IKRGKFSLQEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 65 ikrg~WT~EED~~Lielv~~~Gn-kWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
|++++||+|||++|++++++||. +|.+||.+|||||+.||++||+.+|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 999999999999999999999999864
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.58 E-value=3.2e-15 Score=115.09 Aligned_cols=61 Identities=25% Similarity=0.338 Sum_probs=55.8
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHHhhC-CChHHHhhhCC--CCCHHHHHHHHHHHhhhhhhhcC
Q 039016 60 YLRPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIAAHLP--KRTDNEIKNYWNTHLKKRLTKMG 120 (367)
Q Consensus 60 ~L~p~ikrg~WT~EED~~Lielv~~~G-nkWskIA~~lp--gRT~nq~KnRW~~~lkk~l~k~g 120 (367)
...+..++++||+|||++|+++|++|| ++|.+||.+|+ +||+.||++||+.+|++.+.+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 345678899999999999999999999 79999999999 99999999999999999877654
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.56 E-value=3.8e-15 Score=108.43 Aligned_cols=50 Identities=34% Similarity=0.704 Sum_probs=47.0
Q ss_pred CcCCCCCHHHHHHHHHHHHhhCC-ChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 65 IKRGKFSLQEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 65 ikrg~WT~EED~~Lielv~~~Gn-kWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
|++++||+|||++|++++.+||. +|.+||.+|+|||+.||++||+.+|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999996 699999999999999999999998854
No 25
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.55 E-value=8.2e-16 Score=117.42 Aligned_cols=56 Identities=27% Similarity=0.437 Sum_probs=49.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccc-cccCccccccchhhccCCCCc
Q 039016 11 GLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAG-LQRCGKSCRLRWINYLRPDIK 66 (367)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~-~~Rt~kqCr~RW~n~L~p~ik 66 (367)
..+|++||+|||++|+++|++||.++|..||..++ .+|+++||++||.|+++|.|+
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 35799999999999999999999999999976653 589999999999999998764
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.54 E-value=7.7e-15 Score=107.43 Aligned_cols=49 Identities=29% Similarity=0.440 Sum_probs=46.7
Q ss_pred cCCCCCHHHHHHHHHHHHhhC-CChHHHhhhCC--CCCHHHHHHHHHHHhhh
Q 039016 66 KRGKFSLQEEQTIIQLHALLG-NRWSAIAAHLP--KRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 66 krg~WT~EED~~Lielv~~~G-nkWskIA~~lp--gRT~nq~KnRW~~~lkk 114 (367)
++++||+|||++|+++|++|| ++|..||.+|+ +||+.||++||+.++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999 79999999999 99999999999999875
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=8.2e-15 Score=110.05 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=49.7
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 62 RPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 62 ~p~ikrg~WT~EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
.+.+++++||+|||++|++++++|| ++|.+||++||+||+.||++||+.+|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 8999999999999999999999988753
No 28
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.5e-14 Score=112.75 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=53.1
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHhhC------CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 039016 62 RPDIKRGKFSLQEEQTIIQLHALLG------NRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTK 118 (367)
Q Consensus 62 ~p~ikrg~WT~EED~~Lielv~~~G------nkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k 118 (367)
+|.+++++||+|||++|++++++|| ++|.+||.+|++||+.||++||+.+|++.++.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999 79999999999999999999999999876554
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=3.7e-15 Score=111.92 Aligned_cols=55 Identities=18% Similarity=0.491 Sum_probs=50.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCC
Q 039016 9 KVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPD 64 (367)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ 64 (367)
.+.+++++||+|||++|+++|++||.++|..||+.++ +|+++||++||.+||.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 3578999999999999999999999889999976665 999999999999999875
No 30
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.49 E-value=5.4e-15 Score=108.24 Aligned_cols=50 Identities=24% Similarity=0.476 Sum_probs=45.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccccccc-ccCccccccchhhccC
Q 039016 13 KKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGL-QRCGKSCRLRWINYLR 62 (367)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~-~Rt~kqCr~RW~n~L~ 62 (367)
+|++||+|||++|+++|++||.++|..||..+++ +|+++||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999766644 7999999999999986
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.47 E-value=5.1e-14 Score=107.48 Aligned_cols=51 Identities=27% Similarity=0.478 Sum_probs=46.6
Q ss_pred CcCCCCCHHHHHHHHHHHHhhC-CChHHHhhhCC--CCCHHHHHHHHHHHhhhh
Q 039016 65 IKRGKFSLQEEQTIIQLHALLG-NRWSAIAAHLP--KRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 65 ikrg~WT~EED~~Lielv~~~G-nkWskIA~~lp--gRT~nq~KnRW~~~lkk~ 115 (367)
.++++||+|||++|+++|++|| ++|.+||+++| +||+.||++||+.++|..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 5789999999999999999999 69999999976 999999999999988764
No 32
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.6e-15 Score=113.73 Aligned_cols=60 Identities=23% Similarity=0.422 Sum_probs=53.6
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCC
Q 039016 7 CEKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGK 69 (367)
Q Consensus 7 ~~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~ 69 (367)
+..|.++|++||+|||++|+++|++||. +|..||. + ++|+++||+.||.+||+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~-~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-I-IGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-H-HSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-c-cCcCHHHHHHHHHHHhChHhcCCC
Confidence 3568999999999999999999999997 9999977 4 489999999999999998777653
No 33
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=1.3e-14 Score=108.48 Aligned_cols=52 Identities=21% Similarity=0.429 Sum_probs=47.1
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhcc
Q 039016 10 VGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYL 61 (367)
Q Consensus 10 ~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L 61 (367)
..+.+++||+|||++|+++|++||.++|..||..++.+|+++|||.||.+|+
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3567899999999999999999998899999777666999999999999975
No 34
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=8.1e-14 Score=104.09 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=46.8
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhhC-CChHHHhhhCC-CCCHHHHHHHHHHHh
Q 039016 63 PDIKRGKFSLQEEQTIIQLHALLG-NRWSAIAAHLP-KRTDNEIKNYWNTHL 112 (367)
Q Consensus 63 p~ikrg~WT~EED~~Lielv~~~G-nkWskIA~~lp-gRT~nq~KnRW~~~l 112 (367)
..+.+++||+|||++|++++++|| ++|.+||++|+ +||+.||++||+.++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999999 99999999999 999999999998765
No 35
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.19 E-value=5.5e-15 Score=119.54 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=53.0
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 60 YLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 60 ~L~p~ikrg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
.+.|.+++++||+|||++|++++.+||++|..||.+|||||++||++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999998764
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=9.2e-15 Score=114.01 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=54.7
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCC-----CCccccccccccccCccccccchhhccCCCCcCCC
Q 039016 8 EKVGLKKGPWTPEEDQKLLAFIEQHGH-----GSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGK 69 (367)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~~G~-----~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~ 69 (367)
.+|.+++++||+|||++|+++|.+||. ++|..||+.++ +|+++||+.||++||.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999996 78999976665 99999999999999998777664
No 37
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.40 E-value=1.1e-13 Score=115.47 Aligned_cols=79 Identities=22% Similarity=0.342 Sum_probs=69.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccCccccccchhhcc-----CCCCcCCCCCHHHHHH-HH
Q 039016 9 KVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAG---LQRCGKSCRLRWINYL-----RPDIKRGKFSLQEEQT-II 79 (367)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~---~~Rt~kqCr~RW~n~L-----~p~ikrg~WT~EED~~-Li 79 (367)
+...++++||+|||++|+++|++||.|+|..|+...+ ++|++.+|++||.+++ .|.+++|.-+++|-.. ++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~ 87 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL 87 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence 4678899999999999999999999999999976543 7999999999999998 6999999988888777 88
Q ss_pred HHHHhhCC
Q 039016 80 QLHALLGN 87 (367)
Q Consensus 80 elv~~~Gn 87 (367)
+|++.+|+
T Consensus 88 ~~~~~~~~ 95 (105)
T 2aje_A 88 NAHGYWTQ 95 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877653
No 38
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=6.6e-13 Score=103.98 Aligned_cols=51 Identities=8% Similarity=0.208 Sum_probs=47.7
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhhC----CChHHHhhhCCCCCHHHHHHHHHHHhh
Q 039016 63 PDIKRGKFSLQEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWNTHLK 113 (367)
Q Consensus 63 p~ikrg~WT~EED~~Lielv~~~G----nkWskIA~~lpgRT~nq~KnRW~~~lk 113 (367)
+.+.+++||.|||++|++++++|| ++|.+||++|||||++||++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999 799999999999999999999998874
No 39
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.36 E-value=5e-13 Score=109.90 Aligned_cols=53 Identities=32% Similarity=0.697 Sum_probs=48.7
Q ss_pred CCcCCCCCHHHHHHHHHHHHhhCC-ChHHHhhhCCCCCHHHHHHHHHHHhhhhh
Q 039016 64 DIKRGKFSLQEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHLKKRL 116 (367)
Q Consensus 64 ~ikrg~WT~EED~~Lielv~~~Gn-kWskIA~~lpgRT~nq~KnRW~~~lkk~l 116 (367)
++++++||+|||++|++++.+||. +|..||.+||+||+.||+.||..+|.+.+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~ 54 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEV 54 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcc
Confidence 478999999999999999999996 79999999999999999999999885543
No 40
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.35 E-value=3.4e-13 Score=108.03 Aligned_cols=70 Identities=21% Similarity=0.448 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc---cccccCccccccchhhcc-----CCCCcCC-CCCHHHHHHHHHHHHh
Q 039016 15 GPWTPEEDQKLLAFIEQHGHGSWRALPAK---AGLQRCGKSCRLRWINYL-----RPDIKRG-KFSLQEEQTIIQLHAL 84 (367)
Q Consensus 15 g~WT~EEDe~L~~~V~~~G~~nW~~Ia~k---~~~~Rt~kqCr~RW~n~L-----~p~ikrg-~WT~EED~~Lielv~~ 84 (367)
.+||+|||++|+++|++||.|+|..|+.. .+++|++.+|++||.|+| .|.++++ +...+....++.|++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999764 357999999999999998 6777776 5777777889988875
No 41
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.35 E-value=6.9e-13 Score=112.97 Aligned_cols=62 Identities=23% Similarity=0.449 Sum_probs=54.7
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhcCCCC
Q 039016 62 RPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTKMGIDP 123 (367)
Q Consensus 62 ~p~ikrg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k~g~~~ 123 (367)
.+..++++||+|||++|++++++||.+|..||.+||+||..||+.||+.+|.+.+.+..|++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~ 67 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTA 67 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCH
Confidence 35689999999999999999999999999999999999999999999999977665554443
No 42
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.35 E-value=1.1e-13 Score=107.47 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=52.2
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcC
Q 039016 8 EKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKR 67 (367)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikr 67 (367)
..|.+++++||+|||++|+++|++||. +|..||. ++++|++.||+.||.+||++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999997 9999966 556999999999999999876665
No 43
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.29 E-value=8.1e-13 Score=103.49 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=47.2
Q ss_pred CCccccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcC
Q 039016 3 RSPCCEKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKR 67 (367)
Q Consensus 3 R~pc~~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikr 67 (367)
|.--...|.++|++||+|||++|+++|++||. +|..||..+ +|++.||+.||.. |....+.
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 33445678999999999999999999999996 699997666 9999999999985 5544443
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.27 E-value=2.7e-12 Score=101.84 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=45.2
Q ss_pred CCcCCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHH
Q 039016 64 DIKRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTH 111 (367)
Q Consensus 64 ~ikrg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~ 111 (367)
...+++||+|||++|++++++||++|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999999999865
No 45
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.26 E-value=3.6e-12 Score=105.56 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCC-ChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhcCCC
Q 039016 67 RGKFSLQEEQTIIQLHALLGN-RWSAIAAHLPKRTDNEIKNYWNTHLKKRLTKMGID 122 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~Gn-kWskIA~~lpgRT~nq~KnRW~~~lkk~l~k~g~~ 122 (367)
+++||+|||++|+++|.+||. +|..||.+||+||+.||+.||..+|.+.+.+..|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT 57 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWS 57 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccC
Confidence 589999999999999999995 89999999999999999999999997665554443
No 46
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.24 E-value=1.2e-11 Score=101.14 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=50.7
Q ss_pred cCCCCCHHHHHHHHHHHHhhC----CChHHHhhhCCCCCHHHHHHHHHHHhhhh-hhhcCCCCC
Q 039016 66 KRGKFSLQEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWNTHLKKR-LTKMGIDPV 124 (367)
Q Consensus 66 krg~WT~EED~~Lielv~~~G----nkWskIA~~lpgRT~nq~KnRW~~~lkk~-l~k~g~~~~ 124 (367)
.+++||.|||++|++++++|| ++|.+||++|||||+++|++||+.+++.. .+..|..|.
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~ 70 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 467999999999999999996 78999999999999999999999998764 445565554
No 47
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.23 E-value=6e-12 Score=107.75 Aligned_cols=56 Identities=25% Similarity=0.517 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhcCCC
Q 039016 67 RGKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTKMGID 122 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k~g~~ 122 (367)
+|+||+|||++|++++.+|| ++|..||.+|||||..||+.||..+|.+.+.+..|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 58 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCC
Confidence 68999999999999999999 789999999999999999999999997665544433
No 48
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.23 E-value=1.2e-11 Score=93.78 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=46.4
Q ss_pred CcCCCCCHHHHHHHHHHHHhhCCChHHHh---hhCCCCCHHHHHHHHHHHhhh
Q 039016 65 IKRGKFSLQEEQTIIQLHALLGNRWSAIA---AHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 65 ikrg~WT~EED~~Lielv~~~GnkWskIA---~~lpgRT~nq~KnRW~~~lkk 114 (367)
-++.+||+|||+.|+++|++||.+|++|+ .++++||..+||+||+.+.|+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 688999999999999998865
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.22 E-value=1.5e-11 Score=98.53 Aligned_cols=48 Identities=25% Similarity=0.522 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHHhhCC-ChHHHhhh----CCCCCHHHHHHHHHHHhhhh
Q 039016 68 GKFSLQEEQTIIQLHALLGN-RWSAIAAH----LPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 68 g~WT~EED~~Lielv~~~Gn-kWskIA~~----lpgRT~nq~KnRW~~~lkk~ 115 (367)
.+||+|||++|+++|++||. +|++|++. |++||+++||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999996 99999996 89999999999999999755
No 50
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.22 E-value=6.7e-12 Score=117.75 Aligned_cols=55 Identities=25% Similarity=0.457 Sum_probs=49.1
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhhCCC------hHHHhhhCCCCCHHHHHHHHHHHhhhhhh
Q 039016 63 PDIKRGKFSLQEEQTIIQLHALLGNR------WSAIAAHLPKRTDNEIKNYWNTHLKKRLT 117 (367)
Q Consensus 63 p~ikrg~WT~EED~~Lielv~~~Gnk------WskIA~~lpgRT~nq~KnRW~~~lkk~l~ 117 (367)
+.+++++||+|||++|+++|++||++ |.+||++|||||+++||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 45788999999999999999999986 99999999999999999999999999875
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.22 E-value=1.2e-11 Score=105.59 Aligned_cols=55 Identities=25% Similarity=0.477 Sum_probs=50.4
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHHhhCC-ChHHHhhh----CCCCCHHHHHHHHHHHhhhh
Q 039016 61 LRPDIKRGKFSLQEEQTIIQLHALLGN-RWSAIAAH----LPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 61 L~p~ikrg~WT~EED~~Lielv~~~Gn-kWskIA~~----lpgRT~nq~KnRW~~~lkk~ 115 (367)
+.+..++++||+|||++|+++|++||. +|++|+.. |++||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 456788999999999999999999996 99999998 49999999999999999754
No 52
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.20 E-value=5.6e-12 Score=99.98 Aligned_cols=53 Identities=23% Similarity=0.408 Sum_probs=47.3
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhcc
Q 039016 7 CEKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYL 61 (367)
Q Consensus 7 ~~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L 61 (367)
+-+....+++||+|||++|+++|++|| ++|..||..++ +|++.||+.||.++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRLP 63 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTSC
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 345667799999999999999999999 89999977766 899999999999983
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.19 E-value=4e-11 Score=99.95 Aligned_cols=53 Identities=26% Similarity=0.461 Sum_probs=48.4
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhhCC-ChHHHhhhC----CCCCHHHHHHHHHHHhhhh
Q 039016 63 PDIKRGKFSLQEEQTIIQLHALLGN-RWSAIAAHL----PKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 63 p~ikrg~WT~EED~~Lielv~~~Gn-kWskIA~~l----pgRT~nq~KnRW~~~lkk~ 115 (367)
+..++++||+|||++|+++|++||. +|+.|+..+ ++||+.+||+||+++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 4578899999999999999999996 999999965 8999999999999999654
No 54
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.72 E-value=5.9e-12 Score=101.72 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=48.6
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccCC
Q 039016 8 EKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRP 63 (367)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p 63 (367)
.-+.+++|+||+|||++|+++|.+||. +|..||..+ ++|++.||+.||.+||+.
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l-~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMV-GSKTVSQCKNFYFNYKKR 63 (89)
Confidence 457899999999999999999999997 899996654 599999999999999863
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.11 E-value=8.2e-11 Score=100.49 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=47.9
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhhCC-ChHHHhhh----CCCCCHHHHHHHHHHHhhhh
Q 039016 63 PDIKRGKFSLQEEQTIIQLHALLGN-RWSAIAAH----LPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 63 p~ikrg~WT~EED~~Lielv~~~Gn-kWskIA~~----lpgRT~nq~KnRW~~~lkk~ 115 (367)
...++++||.|||+.|+++|++||. +|++|+.. |++||+.+||+||+++++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3457899999999999999999996 99999987 48999999999999999764
No 56
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.07 E-value=2.2e-11 Score=95.37 Aligned_cols=55 Identities=16% Similarity=0.348 Sum_probs=48.1
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCccccccchhhccC
Q 039016 7 CEKVGLKKGPWTPEEDQKLLAFIEQHGH---GSWRALPAKAGLQRCGKSCRLRWINYLR 62 (367)
Q Consensus 7 ~~k~~lkKg~WT~EEDe~L~~~V~~~G~---~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~ 62 (367)
-+++...+++||+|||++|+++|.+||. .+|..||+.+ ++|+.+||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v-pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV-PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC-SSSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 4677888999999999999999999993 5899996555 59999999999998765
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.95 E-value=1.1e-09 Score=89.50 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=59.6
Q ss_pred cccccchhhccCCCCcCCCCCHHHHHHHHHHHHhhCCChHHHhhhC-----CCCCHHHHHHHHHHHhhhhhhhc
Q 039016 51 KSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAHL-----PKRTDNEIKNYWNTHLKKRLTKM 119 (367)
Q Consensus 51 kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~GnkWskIA~~l-----pgRT~nq~KnRW~~~lkk~l~k~ 119 (367)
.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..+||+||..+.++.++..
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4578999999976 89999999999999999999999999999 58999999999999998877665
No 58
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.95 E-value=9.1e-10 Score=85.89 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=50.3
Q ss_pred CCcCCCCCHHHHHHHHHHHHhhC----CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhcCCCC
Q 039016 64 DIKRGKFSLQEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTKMGIDP 123 (367)
Q Consensus 64 ~ikrg~WT~EED~~Lielv~~~G----nkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k~g~~~ 123 (367)
..+.+.||.||+++|.+++++|+ ++|.+||.+| |||..+|++||+.+++......|..|
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~vp 67 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGMVS 67 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCCCC
Confidence 35678999999999999999997 7899999998 99999999999999876544445444
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1e-09 Score=82.58 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=44.6
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhh
Q 039016 66 KRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLK 113 (367)
Q Consensus 66 krg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lk 113 (367)
..++||+||++++++++.+||.+|..||.+||+||..+|..+|....|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999987654
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.73 E-value=1.7e-09 Score=88.33 Aligned_cols=48 Identities=10% Similarity=0.295 Sum_probs=41.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CCCccccccccccccCccccccchhhcc
Q 039016 13 KKGPWTPEEDQKLLAFIEQHG---HGSWRALPAKAGLQRCGKSCRLRWINYL 61 (367)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~~G---~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L 61 (367)
.+++||+|||++|.+++.+|| ...|..||+.++ +|+.++|+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 368999999999999999998 457999966655 999999999999874
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.64 E-value=2.7e-08 Score=92.72 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=45.9
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 66 KRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 66 krg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
...+||+||+.++++++++||++|..||+++++||..|||++|+.++|+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999987755
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.52 E-value=2.4e-08 Score=75.74 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=45.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccc--ccccccCccccccchhhccCC
Q 039016 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPA--KAGLQRCGKSCRLRWINYLRP 63 (367)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~--k~~~~Rt~kqCr~RW~n~L~p 63 (367)
-++.+||+|||+.|++.|++||. +|..|+. .+..+|+....++||.+..+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36889999999999999999997 9999964 466799999999999997653
No 63
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.44 E-value=1.8e-07 Score=73.13 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhhC----CChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 67 RGKFSLQEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~G----nkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
...||.+|+++|.++.+.|+ .+|.+||.++||||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 45899999999999999998 5799999999999999999999988543
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.31 E-value=1.1e-07 Score=73.97 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=43.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCccccccchhhccC
Q 039016 11 GLKKGPWTPEEDQKLLAFIEQHGH---GSWRALPAKAGLQRCGKSCRLRWINYLR 62 (367)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~~G~---~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~ 62 (367)
..+++.||.|||++|.+++.+|+. +.|..||+.+ +|+.++|+.||+.+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 456789999999999999999984 5799997775 7999999999988754
No 65
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.31 E-value=1.3e-07 Score=70.96 Aligned_cols=49 Identities=22% Similarity=0.485 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCccccccccccccCccccccchhhccC
Q 039016 14 KGPWTPEEDQKLLAFIEQH--------GHGSWRALPAKAGLQRCGKSCRLRWINYLR 62 (367)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~~--------G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~ 62 (367)
|.+||+|||+.|.++|.+| |..-|.+|++...++++-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5799999999999999999 444699997756779999999999999885
No 66
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=2.7e-07 Score=69.26 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=43.7
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhc
Q 039016 8 EKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINY 60 (367)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~ 60 (367)
++..-..++||+||++++.+++.+|| .+|..|| .+.++|+..||+.+|...
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia-~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIA-SYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHH-HHCTTSCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHh
Confidence 44445678999999999999999999 5999996 666699999999998654
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.23 E-value=1.2e-06 Score=65.59 Aligned_cols=47 Identities=23% Similarity=0.422 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCC-hHHHhh-hCCCCCHHHHHHHHHHHhh
Q 039016 67 RGKFSLQEEQTIIQLHALL--------GNR-WSAIAA-HLPKRTDNEIKNYWNTHLK 113 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~--------Gnk-WskIA~-~lpgRT~nq~KnRW~~~lk 113 (367)
|.+||+|||++|++.+++| |++ |..+|+ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 543 999999 8999999999999998764
No 68
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.22 E-value=8.2e-07 Score=90.90 Aligned_cols=46 Identities=15% Similarity=0.319 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhh
Q 039016 68 GKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLK 113 (367)
Q Consensus 68 g~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lk 113 (367)
..||.||-.++++++.+||.+|..||.+++.||..|||++|..+.+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999976543
No 69
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=3.9e-06 Score=63.39 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=46.8
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHhhCCChHHHhh-hCCCCCHHHHHHHHHHHhh
Q 039016 62 RPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAA-HLPKRTDNEIKNYWNTHLK 113 (367)
Q Consensus 62 ~p~ikrg~WT~EED~~Lielv~~~GnkWskIA~-~lpgRT~nq~KnRW~~~lk 113 (367)
.|.++...||+||-++..+.+.+||.+|..|++ .||+||..+|..+|....|
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKk 56 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKK 56 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHHC
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcccC
Confidence 467888999999999999999999999999999 5999999999998875543
No 70
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.94 E-value=1.1e-05 Score=65.42 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHhhCC---ChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 69 KFSLQEEQTIIQLHALLGN---RWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~Gn---kWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
-||.|||+.|+..+++-|. .|..||+.|.+|+.+||++||+.+++-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 5999999999999999985 899999999999999999999998854
No 71
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.93 E-value=2.1e-06 Score=67.15 Aligned_cols=48 Identities=25% Similarity=0.513 Sum_probs=41.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCccccccchhhccC
Q 039016 14 KGPWTPEEDQKLLAFIEQHGH---GSWRALPAKAGLQRCGKSCRLRWINYLR 62 (367)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~~G~---~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~ 62 (367)
...||.+|+++|.+++..|+. ++|..||+.++ +|+..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 458999999999999999975 57999976665 8999999999998754
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.90 E-value=2.3e-06 Score=66.83 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHhhC----CChHHHhhhCCCCCHHHHHHHHH
Q 039016 67 RGKFSLQEEQTIIQLHALLG----NRWSAIAAHLPKRTDNEIKNYWN 109 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~G----nkWskIA~~lpgRT~nq~KnRW~ 109 (367)
..+||.+|+++|.++.++|+ .+|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 34799999999999999998 48999999999999999999874
No 73
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.88 E-value=2.7e-05 Score=63.39 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=52.5
Q ss_pred cchhhccCCCCcCCCCCHHHHHHHHHHHHhhCCChHHHhhhCC-----CCCHHHHHHHHHHHhhhhhhhc
Q 039016 55 LRWINYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAHLP-----KRTDNEIKNYWNTHLKKRLTKM 119 (367)
Q Consensus 55 ~RW~n~L~p~ikrg~WT~EED~~Lielv~~~GnkWskIA~~lp-----gRT~nq~KnRW~~~lkk~l~k~ 119 (367)
+.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|.||..+.++.++..
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 45666665 3689999999999999999999999998874 7999999999999998876653
No 74
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.75 E-value=8.6e-06 Score=76.00 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=43.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccC
Q 039016 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLR 62 (367)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~ 62 (367)
....+||.||++++++++.+|| .+|..||..+ .+|+..||+.+|.+|.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~V-gTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVI-GNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHH-SSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 3477999999999999999999 5999996655 59999999999998864
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.93 E-value=4e-06 Score=64.47 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHhhCC---ChHHHhhhCCCCCHHHHHHHHHHHhh
Q 039016 69 KFSLQEEQTIIQLHALLGN---RWSAIAAHLPKRTDNEIKNYWNTHLK 113 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~Gn---kWskIA~~lpgRT~nq~KnRW~~~lk 113 (367)
.||.|||+.|+..+++-|. .|..||..| +|+++||++||+.+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999996 899999999 9999999999998874
No 76
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.59 E-value=9.9e-05 Score=60.00 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHh
Q 039016 67 RGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHL 112 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~l 112 (367)
...||+||.++..+...+||.+|.+||.+||+||-.+|..+|....
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence 3589999999999999999999999999999999999999887554
No 77
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.59 E-value=0.0001 Score=71.58 Aligned_cols=100 Identities=16% Similarity=0.231 Sum_probs=77.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccc-------chhh------c---------------------
Q 039016 15 GPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRL-------RWIN------Y--------------------- 60 (367)
Q Consensus 15 g~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~-------RW~n------~--------------------- 60 (367)
+.||..|...++.++.+||..+|..||+.++ +++...++. ||.. |
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999988776 677655431 1100 0
Q ss_pred -------------c---CCCCcCCCCCHHHHHHHHHHHHhhC----CChHHHh---h---------hCCCCCHHHHHHHH
Q 039016 61 -------------L---RPDIKRGKFSLQEEQTIIQLHALLG----NRWSAIA---A---------HLPKRTDNEIKNYW 108 (367)
Q Consensus 61 -------------L---~p~ikrg~WT~EED~~Lielv~~~G----nkWskIA---~---------~lpgRT~nq~KnRW 108 (367)
| .+..+...||++||..|+-++.+|| +.|..|. . ++-.||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 0222445799999999999999999 4799996 2 55789999999999
Q ss_pred HHHhhhh
Q 039016 109 NTHLKKR 115 (367)
Q Consensus 109 ~~~lkk~ 115 (367)
+++++-.
T Consensus 270 ~tLi~~i 276 (304)
T 1ofc_X 270 NTLITLI 276 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999654
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.58 E-value=0.00013 Score=56.18 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCChHHHhh-hCCCCCHHHHHHHHHHHh
Q 039016 67 RGKFSLQEEQTIIQLHALLGNRWSAIAA-HLPKRTDNEIKNYWNTHL 112 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~GnkWskIA~-~lpgRT~nq~KnRW~~~l 112 (367)
...||+||-++..+.+.+||.+|..|++ .||+||..+|..+|....
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 54 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWK 54 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 4589999999999999999999999999 599999999999987443
No 79
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.34 E-value=4e-05 Score=59.87 Aligned_cols=44 Identities=11% Similarity=0.287 Sum_probs=37.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CccccccccccccCccccccchh
Q 039016 14 KGPWTPEEDQKLLAFIEQHGHG---SWRALPAKAGLQRCGKSCRLRWI 58 (367)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~~G~~---nW~~Ia~k~~~~Rt~kqCr~RW~ 58 (367)
..+||.||+++|.+++..|+.+ .|..||+.++ +|+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4589999999999999999764 7999966665 999999999985
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.00025 Score=53.39 Aligned_cols=51 Identities=10% Similarity=0.064 Sum_probs=43.7
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhh
Q 039016 8 EKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWIN 59 (367)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n 59 (367)
..|.+....||+||-++..+.+.+||. +|..|++.+.+.|+..+|..-|-.
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHHhc
Confidence 457788899999999999999999995 999996546679999999876643
No 81
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.91 E-value=0.00086 Score=52.89 Aligned_cols=48 Identities=17% Similarity=0.432 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHhhC----------CChHHHhhhCC----CCCHHHHHHHHHHHhhh
Q 039016 67 RGKFSLQEEQTIIQLHALLG----------NRWSAIAAHLP----KRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~G----------nkWskIA~~lp----gRT~nq~KnRW~~~lkk 114 (367)
...||.+|-.+||++...+. ..|..||..|. .||+.||+.+|..+.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46799999999999997643 25999999973 69999999999988765
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.54 E-value=0.00078 Score=69.04 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=42.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhcc
Q 039016 13 KKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYL 61 (367)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L 61 (367)
...+||.||-+++++++.+||. +|..|+..++ .|+..||+..|.+|-
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4689999999999999999995 9999977766 999999999998764
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.50 E-value=0.00021 Score=56.44 Aligned_cols=49 Identities=24% Similarity=0.613 Sum_probs=40.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---ccccCccccccchhhcc
Q 039016 13 KKGPWTPEEDQKLLAFIEQHGH---------GSWRALPAKA---GLQRCGKSCRLRWINYL 61 (367)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~~G~---------~nW~~Ia~k~---~~~Rt~kqCr~RW~n~L 61 (367)
+...||.+|-.+|+++...+.. .-|..||..| |..|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5679999999999999976422 1599998876 47899999999999864
No 84
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.34 E-value=0.0011 Score=53.93 Aligned_cols=49 Identities=14% Similarity=0.302 Sum_probs=42.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccc----cccCccccccchhhcc
Q 039016 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAG----LQRCGKSCRLRWINYL 61 (367)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~----~~Rt~kqCr~RW~n~L 61 (367)
|.-.+||.||+..|.+++++|+. .|..|+.+.. .+|+..+.+.||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 34489999999999999999996 9999988874 4799999999998754
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.79 E-value=0.0032 Score=48.34 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=39.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhh
Q 039016 13 KKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWIN 59 (367)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n 59 (367)
....||+||-++..+.+.+||. +|..|++.+.+.|+..+|..-|-.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3568999999999999999995 999996546779999999876643
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.75 E-value=0.022 Score=56.71 Aligned_cols=103 Identities=18% Similarity=0.268 Sum_probs=75.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccc----------------------------------------
Q 039016 15 GPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCR---------------------------------------- 54 (367)
Q Consensus 15 g~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr---------------------------------------- 54 (367)
+.|+.-|=..++.++.+||..+-..||..+.++++...++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888889999999999888888887775456554433
Q ss_pred --------cchhhc-cC-CCC--cCCCCCHHHHHHHHHHHHhhC----CChHHHhhh------------CCCCCHHHHHH
Q 039016 55 --------LRWINY-LR-PDI--KRGKFSLQEEQTIIQLHALLG----NRWSAIAAH------------LPKRTDNEIKN 106 (367)
Q Consensus 55 --------~RW~n~-L~-p~i--krg~WT~EED~~Lielv~~~G----nkWskIA~~------------lpgRT~nq~Kn 106 (367)
.-|..+ +. +.. +...||++||..|+-++-+|| +.|.+|-.. |..||+.+|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 111110 00 111 345799999999999999999 569999433 46799999999
Q ss_pred HHHHHhhhhhh
Q 039016 107 YWNTHLKKRLT 117 (367)
Q Consensus 107 RW~~~lkk~l~ 117 (367)
|.+++++-..+
T Consensus 284 Rc~tLi~~IeK 294 (374)
T 2y9y_A 284 RGNTLLQCLEK 294 (374)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999965443
No 87
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.26 E-value=0.0031 Score=48.52 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=40.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--CCccccccccccccCccccccchhhccC
Q 039016 14 KGPWTPEEDQKLLAFIEQHGH--GSWRALPAKAGLQRCGKSCRLRWINYLR 62 (367)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~~G~--~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~ 62 (367)
--.||.|||..|+..+++.|. .-|..||.++ +|++.|+.+||+..++
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 347999999999999999986 4699997666 7999999999988654
No 88
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=95.13 E-value=0.0064 Score=49.22 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=37.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchh
Q 039016 14 KGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWI 58 (367)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~ 58 (367)
...||+||.++..+.+..|| .+|..| +.+.+.|+..+|...|-
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~I-a~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLI-ASFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHH-HHTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHH-HHHcCCCCHHHHHHHHh
Confidence 46899999999999999999 599999 55667999999987664
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.88 E-value=0.0057 Score=49.55 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCccccccccccccCccccccchhhc
Q 039016 15 GPWTPEEDQKLLAFIEQHGH--GSWRALPAKAGLQRCGKSCRLRWINY 60 (367)
Q Consensus 15 g~WT~EEDe~L~~~V~~~G~--~nW~~Ia~k~~~~Rt~kqCr~RW~n~ 60 (367)
-.||.|||..|+...++.|. .-|..||++++ +|++.|+.+||+..
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 46999999999999999986 47999987776 89999999999864
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.05 E-value=0.037 Score=49.83 Aligned_cols=37 Identities=35% Similarity=0.604 Sum_probs=31.3
Q ss_pred CccccCCCCccCCCCHHHHHHHHHHHHHhCCCCcccc
Q 039016 4 SPCCEKVGLKKGPWTPEEDQKLLAFIEQHGHGSWRAL 40 (367)
Q Consensus 4 ~pc~~k~~lkKg~WT~EEDe~L~~~V~~~G~~nW~~I 40 (367)
-|++.++.-....||.+||..|+..|.+||.|+|..|
T Consensus 124 i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~I 160 (211)
T 4b4c_A 124 IPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMI 160 (211)
T ss_dssp CCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHH
Confidence 3555565555667999999999999999999999999
No 91
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.69 E-value=0.11 Score=50.48 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 68 GKFSLQEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 68 g~WT~EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
+.||..+...++.++.+|| ++|..||..|+|+|..+|+.+...+.++
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 3699999999999999999 6899999999999999999888887754
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.46 E-value=0.22 Score=37.67 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=41.3
Q ss_pred CcCCCCCHHHHHHHHHHHHhhCCC---hHHHhhhC--CCCCHHHHHHHHHHHh
Q 039016 65 IKRGKFSLQEEQTIIQLHALLGNR---WSAIAAHL--PKRTDNEIKNYWNTHL 112 (367)
Q Consensus 65 ikrg~WT~EED~~Lielv~~~Gnk---WskIA~~l--pgRT~nq~KnRW~~~l 112 (367)
..+-.||+|..+..++++.++|.. +..|.+.| +|.|..+|+.+.+.+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 356689999999999999999954 78998886 6899999999988664
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.89 E-value=0.31 Score=43.73 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=41.9
Q ss_pred cCCCCCHHHHHHHHHHHHhhC---CChHHHhhh--CCCCCHHHHHHHHHHHhhh
Q 039016 66 KRGKFSLQEEQTIIQLHALLG---NRWSAIAAH--LPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 66 krg~WT~EED~~Lielv~~~G---nkWskIA~~--lpgRT~nq~KnRW~~~lkk 114 (367)
....||+.|-..|+.++.+|| .+|..|+.. |.+||..+|+.++..++..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999 689999864 7899999999988877654
No 94
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=89.57 E-value=0.12 Score=41.90 Aligned_cols=49 Identities=14% Similarity=0.302 Sum_probs=40.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccc----cccCccccccchhhcc
Q 039016 12 LKKGPWTPEEDQKLLAFIEQHGHGSWRALPAKAG----LQRCGKSCRLRWINYL 61 (367)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~----~~Rt~kqCr~RW~n~L 61 (367)
|+...||.||...|..++++|.. .|-.|+.+.. ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999996 9999987764 3688888888887653
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.34 E-value=0.33 Score=46.24 Aligned_cols=26 Identities=46% Similarity=0.804 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccc
Q 039016 15 GPWTPEEDQKLLAFIEQHGHGSWRAL 40 (367)
Q Consensus 15 g~WT~EEDe~L~~~V~~~G~~nW~~I 40 (367)
..|+.+||..|+..|.+||.|+|..|
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~I 194 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQI 194 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHH
Confidence 46999999999999999999999999
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=78.14 E-value=1 Score=33.99 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=35.5
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCC---ccccccccc-cccCccccccchhhc
Q 039016 11 GLKKGPWTPEEDQKLLAFIEQHGHGS---WRALPAKAG-LQRCGKSCRLRWINY 60 (367)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~~G~~n---W~~Ia~k~~-~~Rt~kqCr~RW~n~ 60 (367)
...+-.||+|.-++..++|++.|. + +..|-..|+ ++.+..++.-|.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 345789999999999999999994 4 456644443 456777776666554
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=72.23 E-value=7.7 Score=36.79 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHhhC---CChHHHhhh--CCCCCHHHHHHHHHHHhh
Q 039016 67 RGKFSLQEEQTIIQLHALLG---NRWSAIAAH--LPKRTDNEIKNYWNTHLK 113 (367)
Q Consensus 67 rg~WT~EED~~Lielv~~~G---nkWskIA~~--lpgRT~nq~KnRW~~~lk 113 (367)
+++||+.|-+.|++.+.+|| .+|..|+.. |+.|+...|+.-++.++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 57899999999999999999 699999744 789999999998886654
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=64.66 E-value=11 Score=37.47 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHhhC-CChHHHhhhCC-CCCHHHHHHHHHHHhh
Q 039016 68 GKFSLQEEQTIIQLHALLG-NRWSAIAAHLP-KRTDNEIKNYWNTHLK 113 (367)
Q Consensus 68 g~WT~EED~~Lielv~~~G-nkWskIA~~lp-gRT~nq~KnRW~~~lk 113 (367)
+.||..+=..+|.++.+|| ++-..||..|. ++|..+|+.+...+.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 3688888899999999999 66999999997 9999999977766664
No 99
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=56.21 E-value=21 Score=27.10 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 73 QEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 73 EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
+.++.++.|+-..|-.-..||..| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455666777777889999999999 89999999887765543
No 100
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=56.15 E-value=18 Score=25.38 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 73 QEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 73 EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
+.+..++.++-..|-.+.+||..+ |-+...|+.+.+..+++-
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455566777778899999999999 889999998887666443
No 101
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=53.79 E-value=16 Score=26.50 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHh----hCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 73 QEEQTIIQLHAL----LGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 73 EED~~Lielv~~----~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
+.+..++.+.-. .|-.+..||..+ |-+...|+.+....+++-
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344555666554 578999999999 899999999887776543
No 102
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=50.65 E-value=4.2 Score=34.09 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=33.4
Q ss_pred CCccccccccccccCc----cccccchhhccCCCCcCCCCCHHHHHHHHHHHH
Q 039016 35 GSWRALPAKAGLQRCG----KSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHA 83 (367)
Q Consensus 35 ~nW~~Ia~k~~~~Rt~----kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~ 83 (367)
+.|.+|+..++...+. ...+..|.+||.|-- .++++|-..|.+-+.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 3699999999865533 356888999987632 378888888776553
No 103
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=49.27 E-value=16 Score=26.10 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=31.3
Q ss_pred HHHHHHHHHHH----hhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 73 QEEQTIIQLHA----LLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 73 EED~~Lielv~----~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
+.++.++.+.- ..|-.+.+||..+ |-+...|+.+....+++-
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34445555554 3578999999999 999999999888776543
No 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=45.88 E-value=4.1 Score=33.51 Aligned_cols=39 Identities=13% Similarity=0.329 Sum_probs=31.2
Q ss_pred HHHHHHHHhCC-------CCccccccccccccCccccccchhhccCC
Q 039016 24 KLLAFIEQHGH-------GSWRALPAKAGLQRCGKSCRLRWINYLRP 63 (367)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p 63 (367)
+|..+|.+.|- +.|.+|+..++... +...+..|.+||.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57777887764 47999999998665 78889999998875
No 105
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=38.87 E-value=7.5 Score=31.32 Aligned_cols=42 Identities=12% Similarity=0.244 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCC-------CCccccccccccccC----ccccccchhhccCCC
Q 039016 23 QKLLAFIEQHGH-------GSWRALPAKAGLQRC----GKSCRLRWINYLRPD 64 (367)
Q Consensus 23 e~L~~~V~~~G~-------~nW~~Ia~k~~~~Rt----~kqCr~RW~n~L~p~ 64 (367)
-+|..+|.+.|- +.|.+|+..++...+ +.+.+..|.+||.|-
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 357777777763 479999999985542 356788899998763
No 106
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=38.00 E-value=23 Score=28.90 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=28.5
Q ss_pred HHHHHHhhC--------CChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 78 IIQLHALLG--------NRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 78 Lielv~~~G--------nkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
|..+|.++| +.|..||..|.--....+|..|..+|-.
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 666677776 4799999998544478999999888743
No 107
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=37.75 E-value=13 Score=31.83 Aligned_cols=58 Identities=26% Similarity=0.411 Sum_probs=38.2
Q ss_pred HHHHHHHHhCC-------CCccccccccccccC----ccccccchhhccCC--CCcCCCCCHHHHHHHHHH
Q 039016 24 KLLAFIEQHGH-------GSWRALPAKAGLQRC----GKSCRLRWINYLRP--DIKRGKFSLQEEQTIIQL 81 (367)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~Ia~k~~~~Rt----~kqCr~RW~n~L~p--~ikrg~WT~EED~~Liel 81 (367)
+|..+|.+.|- ..|.+|+..++...+ +.+.+..|.+||.| ...+|.=.++|-+.-|+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~~~ 138 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDS 138 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 46666776663 479999999986543 35678889999877 234455555555554443
No 108
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=37.65 E-value=66 Score=23.06 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 70 FSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 70 WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
+|+.|-+ ++.++ ..|-.-..||..+ |-+...|+.+....+++
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4555544 45555 6788999999999 88999999888766644
No 109
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=36.65 E-value=50 Score=26.21 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=26.6
Q ss_pred HHHHHHhhC--------CChHHHhhhCCCCC----HHHHHHHHHHHhhh
Q 039016 78 IIQLHALLG--------NRWSAIAAHLPKRT----DNEIKNYWNTHLKK 114 (367)
Q Consensus 78 Lielv~~~G--------nkWskIA~~lpgRT----~nq~KnRW~~~lkk 114 (367)
|..+|.++| +.|..||..|.--. ...+|..|..+|-.
T Consensus 49 Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 49 LHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 555666666 48999999994332 46888888887754
No 110
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=36.65 E-value=64 Score=24.76 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=34.9
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 66 KRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 66 krg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
.....|+.|-+.|.-+ . .|..-..||..| +-+...|+.+....++|
T Consensus 26 ~~~~Lt~rE~~Vl~l~-~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEV-E-KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHH-H-TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHH-H-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3446888877765544 4 788999999999 89999999988877654
No 111
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=35.55 E-value=1.6e+02 Score=23.05 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccCccccccchhhccC-CC-----CcCCCCCHHHHHHHHHHHHhhCCC
Q 039016 15 GPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLR-PD-----IKRGKFSLQEEQTIIQLHALLGNR 88 (367)
Q Consensus 15 g~WT~EEDe~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~-p~-----ikrg~WT~EED~~Lielv~~~Gnk 88 (367)
...|.++-..++.++. .|. .-.+||..++ .+...++ ||..... .+ -.....+++++..|+++...-.-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 3577888777777763 453 6778877766 3333332 3332211 11 112358888888888873332234
Q ss_pred hHHHhhhCCC-CCHHHHHHHH
Q 039016 89 WSAIAAHLPK-RTDNEIKNYW 108 (367)
Q Consensus 89 WskIA~~lpg-RT~nq~KnRW 108 (367)
-..|+..|.- -+...|....
T Consensus 80 ~~~i~~~lg~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNELQLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHTTCCSCHHHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHH
Confidence 5678888721 4555555433
No 112
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=35.10 E-value=45 Score=27.21 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=27.0
Q ss_pred HHHHHHhhC--------CChHHHhhhCCCCC----HHHHHHHHHHHhhh
Q 039016 78 IIQLHALLG--------NRWSAIAAHLPKRT----DNEIKNYWNTHLKK 114 (367)
Q Consensus 78 Lielv~~~G--------nkWskIA~~lpgRT----~nq~KnRW~~~lkk 114 (367)
|..+|.++| ++|..||..|.--. ...+|..|..+|-.
T Consensus 45 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 45 LSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 666677777 47999999984322 56889988877744
No 113
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=35.00 E-value=6.8 Score=32.25 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC-------CCccccccccccccC---ccccccchhhccCC
Q 039016 24 KLLAFIEQHGH-------GSWRALPAKAGLQRC---GKSCRLRWINYLRP 63 (367)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~Ia~k~~~~Rt---~kqCr~RW~n~L~p 63 (367)
+|..+|.+.|- +.|.+|+..++...+ +.+.+..|.+||.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57788888873 479999999886543 34567778888764
No 114
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=34.01 E-value=55 Score=26.20 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHH
Q 039016 71 SLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKN 106 (367)
Q Consensus 71 T~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~Kn 106 (367)
+..-+..|..+....|..|..+|..| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66677788888999999999999999 777777655
No 115
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=33.62 E-value=61 Score=26.94 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=28.0
Q ss_pred HHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 78 IIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 78 Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
++.+.-..|-....||..| |-+...|+.+....+++-
T Consensus 148 vl~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 148 AITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp HHHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3344444578899999999 899999999887766543
No 116
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=33.52 E-value=63 Score=24.77 Aligned_cols=44 Identities=25% Similarity=0.197 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 69 KFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
.+|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....+++-
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46666666554 45 7788999999999 889999999887766543
No 117
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=33.31 E-value=7.3 Score=32.48 Aligned_cols=40 Identities=20% Similarity=0.437 Sum_probs=29.6
Q ss_pred HHHHHHHHhCC-------CCccccccccccccC----ccccccchhhccCC
Q 039016 24 KLLAFIEQHGH-------GSWRALPAKAGLQRC----GKSCRLRWINYLRP 63 (367)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~Ia~k~~~~Rt----~kqCr~RW~n~L~p 63 (367)
+|..+|.+.|- +.|.+|+..++...+ +...+..|.+||.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777777773 479999999986553 34568888888875
No 118
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=32.98 E-value=7.3 Score=32.40 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC-------CCccccccccccccC---ccccccchhhccCC
Q 039016 24 KLLAFIEQHGH-------GSWRALPAKAGLQRC---GKSCRLRWINYLRP 63 (367)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~Ia~k~~~~Rt---~kqCr~RW~n~L~p 63 (367)
+|..+|.+.|- +.|.+|+..++...+ +.+.+..|.+||.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777763 379999998886653 34567778887754
No 119
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=32.63 E-value=64 Score=24.01 Aligned_cols=43 Identities=26% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 69 KFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
.+|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666665544 44 6788999999999 88999999987766644
No 120
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=32.17 E-value=64 Score=26.56 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=27.2
Q ss_pred HHHHHHhhC--------CChHHHhhhCCCCC----HHHHHHHHHHHhhh
Q 039016 78 IIQLHALLG--------NRWSAIAAHLPKRT----DNEIKNYWNTHLKK 114 (367)
Q Consensus 78 Lielv~~~G--------nkWskIA~~lpgRT----~nq~KnRW~~~lkk 114 (367)
|..+|.++| ++|.+||..|.--+ ...+|..|..+|..
T Consensus 56 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 56 LYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 566666666 48999999984332 46889999888755
No 121
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.97 E-value=55 Score=24.58 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHh----hCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 73 QEEQTIIQLHAL----LGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 73 EED~~Lielv~~----~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
+.++.++.+.-. .|-.+..||..+ |-+...|+.+-...+++-
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344555556554 578999999999 999999999877666443
No 122
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=31.32 E-value=58 Score=26.78 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=26.7
Q ss_pred HHHHHHhhC--------CChHHHhhhCCCCC----HHHHHHHHHHHhhh
Q 039016 78 IIQLHALLG--------NRWSAIAAHLPKRT----DNEIKNYWNTHLKK 114 (367)
Q Consensus 78 Lielv~~~G--------nkWskIA~~lpgRT----~nq~KnRW~~~lkk 114 (367)
|..+|.++| ++|..||..|.-.. ...+|..|..+|-.
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 556666666 47999999984322 46889988887754
No 123
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=30.48 E-value=7.8 Score=31.10 Aligned_cols=41 Identities=15% Similarity=0.402 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCC-------CCccccccccccccC---ccccccchhhccCC
Q 039016 23 QKLLAFIEQHGH-------GSWRALPAKAGLQRC---GKSCRLRWINYLRP 63 (367)
Q Consensus 23 e~L~~~V~~~G~-------~nW~~Ia~k~~~~Rt---~kqCr~RW~n~L~p 63 (367)
-+|..+|.+.|- +.|.+|+..++...+ +.+.+..|.+||.|
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 357777777764 479999998886553 34567777777654
No 124
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=30.48 E-value=36 Score=28.24 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=28.3
Q ss_pred HHHHHHhhC--------CChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 78 IIQLHALLG--------NRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 78 Lielv~~~G--------nkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
|..+|.+.| ++|..||..|.--....+|..|..+|-.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 555666666 3799999998554589999999988865
No 125
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=30.17 E-value=38 Score=28.03 Aligned_cols=32 Identities=16% Similarity=-0.011 Sum_probs=25.7
Q ss_pred HhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 83 ALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 83 ~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
-..|-....||..| |-+...|+++....+++-
T Consensus 148 ~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 148 FFGDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp HHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34577899999999 889999999988776543
No 126
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=30.01 E-value=80 Score=22.12 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 68 GKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 68 g~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
..+|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3577777665544 4 6788999999999 88999999888766644
No 127
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.47 E-value=10 Score=31.51 Aligned_cols=40 Identities=20% Similarity=0.421 Sum_probs=27.9
Q ss_pred HHHHHHHHhCC-------CCccccccccccccCc---cccccchhhccCC
Q 039016 24 KLLAFIEQHGH-------GSWRALPAKAGLQRCG---KSCRLRWINYLRP 63 (367)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~Ia~k~~~~Rt~---kqCr~RW~n~L~p 63 (367)
+|..+|.+.|- +.|.+|+..++...+. ...|..|.+||.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 57777887764 4799999988865532 3566777777654
No 128
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.33 E-value=85 Score=21.30 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 75 EQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 75 D~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
+..++.+ -..|-.-.+||..| |-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4556666 36688889999999 88999999988776654
No 129
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=26.05 E-value=96 Score=24.72 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 73 QEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 73 EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
+.+..++.++-..|-....||..+ |-+...|+.+....+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345566777777889999999999 88999999887765543
No 130
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=25.80 E-value=66 Score=26.14 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhCCChHHHhhhCCCCCHHHHHH
Q 039016 75 EQTIIQLHALLGNRWSAIAAHLPKRTDNEIKN 106 (367)
Q Consensus 75 D~~Lielv~~~GnkWskIA~~lpgRT~nq~Kn 106 (367)
+..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 3567778899999999999999 777776644
No 131
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=25.02 E-value=87 Score=26.50 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=27.3
Q ss_pred HHHHHHhhC--------CChHHHhhhCCC--C---CHHHHHHHHHHHhhh
Q 039016 78 IIQLHALLG--------NRWSAIAAHLPK--R---TDNEIKNYWNTHLKK 114 (367)
Q Consensus 78 Lielv~~~G--------nkWskIA~~lpg--R---T~nq~KnRW~~~lkk 114 (367)
|..+|.+.| +.|.+||..|.- . ....+|..|..+|-.
T Consensus 69 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 69 LYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 566667776 489999999833 1 257899999888755
No 132
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=24.71 E-value=76 Score=25.24 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=24.7
Q ss_pred HhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 83 ALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 83 ~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
-..|-....||..| |-+...|+.+....+++
T Consensus 121 ~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 121 LIRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp HTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 44678899999999 88999999888765533
No 133
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=24.62 E-value=91 Score=26.58 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 74 EEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 74 ED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
.++.++.+.-..|-....||..| |-+...|+.+....+++
T Consensus 191 ~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 191 REKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 33444555555678999999999 89999999887765543
No 134
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=23.85 E-value=40 Score=26.30 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=24.4
Q ss_pred HHHHHHhhC--------CChHHHhhhCCCC----CHHHHHHHHHHHhh
Q 039016 78 IIQLHALLG--------NRWSAIAAHLPKR----TDNEIKNYWNTHLK 113 (367)
Q Consensus 78 Lielv~~~G--------nkWskIA~~lpgR----T~nq~KnRW~~~lk 113 (367)
|..+|.+.| ++|.+||..|.-- ....+|..|..+|-
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 555666665 5899999998322 25677888776653
No 135
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=23.75 E-value=47 Score=29.38 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=18.4
Q ss_pred CCccCCCCHHHHHHHH--------HHHHHhC
Q 039016 11 GLKKGPWTPEEDQKLL--------AFIEQHG 33 (367)
Q Consensus 11 ~lkKg~WT~EEDe~L~--------~~V~~~G 33 (367)
.-..|-||+|+|+.|+ +++++||
T Consensus 111 ~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 111 PNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp TTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 3457899999999875 5788887
No 136
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=23.49 E-value=82 Score=23.66 Aligned_cols=43 Identities=21% Similarity=0.122 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhh
Q 039016 69 KFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKK 114 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk 114 (367)
..|+.|-+.| .++ ..|-.-..||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3566665554 444 6788899999999 88999999988766644
No 137
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=23.16 E-value=80 Score=25.72 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=27.1
Q ss_pred CcCCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHH
Q 039016 65 IKRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKN 106 (367)
Q Consensus 65 ikrg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~Kn 106 (367)
+....=|.+ .|..++...|..|..+|+.| |=+..+|..
T Consensus 17 ~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 17 ILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp CTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred hhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 334444554 45566888999999999999 777776654
No 138
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=23.15 E-value=85 Score=25.62 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHH
Q 039016 68 GKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKN 106 (367)
Q Consensus 68 g~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~Kn 106 (367)
..=|.+ .|..++...|..|..+|+.| |=+..+|..
T Consensus 20 ~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 20 SSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp SCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred CCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 344444 45566788999999999999 777766644
No 139
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.87 E-value=72 Score=26.72 Aligned_cols=45 Identities=4% Similarity=-0.005 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhC-CChHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 039016 73 QEEQTIIQLHALLG-NRWSAIAAHLPKRTDNEIKNYWNTHLKKRLTK 118 (367)
Q Consensus 73 EED~~Lielv~~~G-nkWskIA~~lpgRT~nq~KnRW~~~lkk~l~k 118 (367)
+-|..|+++.++-| -.|..||+.+ |=+...|..|++.+.+..+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45677777777665 6799999999 999999999998877666543
No 140
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=22.84 E-value=1.2e+02 Score=24.90 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=27.4
Q ss_pred HHHHHHhhC--------CChHHHhhhCCC--C---CHHHHHHHHHHHhhh
Q 039016 78 IIQLHALLG--------NRWSAIAAHLPK--R---TDNEIKNYWNTHLKK 114 (367)
Q Consensus 78 Lielv~~~G--------nkWskIA~~lpg--R---T~nq~KnRW~~~lkk 114 (367)
|..+|..+| +.|..||..|.- . ....+|..|..+|..
T Consensus 57 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 57 LYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 566667777 489999999832 2 257899999988755
No 141
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=22.15 E-value=1.5e+02 Score=18.35 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHH
Q 039016 69 KFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYW 108 (367)
Q Consensus 69 ~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW 108 (367)
..++++-..++.++ .-|-....||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45677776777765 4577899999999 78888777654
No 142
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=22.11 E-value=98 Score=24.68 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhCCChHHHhhhCCCCCHHHHHH
Q 039016 75 EQTIIQLHALLGNRWSAIAAHLPKRTDNEIKN 106 (367)
Q Consensus 75 D~~Lielv~~~GnkWskIA~~lpgRT~nq~Kn 106 (367)
+..|..+....|..|..+|.+| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 3445566788899999999999 777777755
No 143
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=20.86 E-value=99 Score=25.56 Aligned_cols=75 Identities=19% Similarity=0.347 Sum_probs=46.6
Q ss_pred cCCCCHHHH--HHHHHHHHHhCCCCccccccccccccCccccccchhhccCCCCcCCCCCHHHHHHHHHHHHhhC-----
Q 039016 14 KGPWTPEED--QKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGKFSLQEEQTIIQLHALLG----- 86 (367)
Q Consensus 14 Kg~WT~EED--e~L~~~V~~~G~~nW~~Ia~k~~~~Rt~kqCr~RW~n~L~p~ikrg~WT~EED~~Lielv~~~G----- 86 (367)
+.+|.+.+. +.|.++.++.|. .-..+|. ++ +|.-. + -.|..+|.++|
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~-gk~lD-L----------------------~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IG-GCELD-L----------------------ACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ET-TEECC-H----------------------HHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CC-CEecc-H----------------------HHHHHHHHHcCcHHHh
Confidence 457888776 457777788885 4544432 22 22211 1 13666777777
Q ss_pred ---CChHHHhhhC--CCC---CHHHHHHHHHHHhhh
Q 039016 87 ---NRWSAIAAHL--PKR---TDNEIKNYWNTHLKK 114 (367)
Q Consensus 87 ---nkWskIA~~l--pgR---T~nq~KnRW~~~lkk 114 (367)
+.|..||..| |.- ....+|..|..+|-.
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 4899999998 321 246788888877743
No 144
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=20.56 E-value=62 Score=28.62 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=26.3
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhhCCChHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 039016 63 PDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKR 115 (367)
Q Consensus 63 p~ikrg~WT~EED~~Lielv~~~GnkWskIA~~lpgRT~nq~KnRW~~~lkk~ 115 (367)
|.-..|-||.|+|+.|. +++=..|.+....-....+..||+-+.+..
T Consensus 110 P~N~pGIWT~eDDe~L~------s~d~~dikrL~kKHG~erie~R~~FLe~~~ 156 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK------SNDQEQIRKLVKKHGTGRMEMRKRFFEKDL 156 (168)
T ss_dssp CTTCTTCCCHHHHHHHH------SCCHHHHHHHHHHHCHHHHHHHHHHHCC--
T ss_pred CCCCCCCCChhhHHHHH------cCCHHHHHHHHHHhCHHHHHHHHHHHHhcc
Confidence 56788999999999887 222222222222224456666776554443
Done!