BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039018
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 31/179 (17%)
Query: 1 PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
PIP P L SL+YL L++N+F IP+++S C +GL +S N G +
Sbjct: 259 PIP--PLPLKSLQYLSLAENKFTGEIPDFLSGA-CDTLTGL--------DLSGNHFYGAV 307
Query: 61 PTSFGRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
P FG S++LS N S E+ ++ +R L++LD++ N SG +P +
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTL-------LKMRGLKVLDLSFNEFSGELPESL 360
Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSG-VLPAELVTDLVALRSLNLFHNHFKEKFP 177
+N SA S+L L D S NNFSG +LP L+ L L +N F K P
Sbjct: 361 TNLSA-------SLLTL----DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 38/190 (20%)
Query: 6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFG 65
P+N +L+ L L +N F IP +S NC+ L SL +S+N L G +P+S G
Sbjct: 389 PKN--TLQELYLQNNGFTGKIPPTLS--NCS------ELVSLH--LSFNYLSGTIPSSLG 436
Query: 66 RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSS-- 123
L + R + L W N +LE ++ +++L+ L + N+L+G IP+ +SN +
Sbjct: 437 SLSKLRDLKL-WLN----MLE--GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 124 -------------ARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170
K +G L +L++ S N+FSG +PAEL D +L L+L N
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKL---SNNSFSGNIPAEL-GDCRSLIWLDLNTN 545
Query: 171 HFKEKFPGSI 180
F P ++
Sbjct: 546 LFNGTIPAAM 555
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 35/183 (19%)
Query: 12 LRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREP 70
L +LD+S N F++ IP LG+ ++L+H IS N L G + E
Sbjct: 199 LEFLDVSSNNFSTGIPF------------LGDCSALQHLDISGNKLSGDFSRAISTCTEL 246
Query: 71 RSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNS-------- 122
+ +++S I + L+SLQ L +A N +G IP +S +
Sbjct: 247 KLLNISSNQFVGPIPPL---------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 297
Query: 123 -SARKEVG----YTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177
S G + +LL S NNFSG LP + + + L+ L+L N F + P
Sbjct: 298 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 357
Query: 178 GSI 180
S+
Sbjct: 358 ESL 360
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 28/179 (15%)
Query: 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
IP+G N ++L ++ LS+N+ IP+WI R L NL LK +S N G +P
Sbjct: 479 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGR--------LENLAILK--LSNNSFSGNIP 528
Query: 62 TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSL---QILDIACNNLSGAIPAC 118
G R SL W + + + N T+ + Q IA N ++G
Sbjct: 529 AELGDCR-----SLIWLDLNTNLF---------NGTIPAAMFKQSGKIAANFIAGKRYVY 574
Query: 119 ISNSSARKEV-GYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKF 176
I N +KE G ++L I N S P + + + + F N+ F
Sbjct: 575 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 32/174 (18%)
Query: 23 NSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPT--SFGRLREPRSISLSWANK 80
NS I +S C+ S LTSL +S N L G + T S G L + N
Sbjct: 83 NSHINGSVSGFKCSAS-----LTSLD--LSRNSLSGPVTTLTSLGSCS-----GLKFLNV 130
Query: 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGA-------IPAC-------ISNSSARK 126
S L+ F L SL++LD++ N++SGA C IS +
Sbjct: 131 SSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 189
Query: 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
+V + +N L D S NNFS +P + D AL+ L++ N F +I
Sbjct: 190 DVDVSRCVN-LEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAI 240
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGR 66
+N S+ +LD+S N + IP+ I + LG +N + G +P G
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG----------HNDISGSIPDEVGD 675
Query: 67 LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP 116
LR + LS I + + L L +D++ NNLSG IP
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAMSA-------LTMLTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 31/179 (17%)
Query: 1 PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
PIP P L SL+YL L++N+F IP+++S C +GL +S N G +
Sbjct: 262 PIP--PLPLKSLQYLSLAENKFTGEIPDFLSGA-CDTLTGL--------DLSGNHFYGAV 310
Query: 61 PTSFGRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119
P FG S++LS N S E+ ++ +R L++LD++ N SG +P +
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTL-------LKMRGLKVLDLSFNEFSGELPESL 363
Query: 120 SNSSARKEVGYTSILNLLRITDRSKNNFSG-VLPAELVTDLVALRSLNLFHNHFKEKFP 177
+N SA S+L L D S NNFSG +LP L+ L L +N F K P
Sbjct: 364 TNLSA-------SLLTL----DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 38/190 (20%)
Query: 6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFG 65
P+N +L+ L L +N F IP +S NC+ L SL +S+N L G +P+S G
Sbjct: 392 PKN--TLQELYLQNNGFTGKIPPTLS--NCS------ELVSLH--LSFNYLSGTIPSSLG 439
Query: 66 RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSS-- 123
L + R + L W N +LE ++ +++L+ L + N+L+G IP+ +SN +
Sbjct: 440 SLSKLRDLKL-WLN----MLE--GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 124 -------------ARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170
K +G L +L++ S N+FSG +PAEL D +L L+L N
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKL---SNNSFSGNIPAEL-GDCRSLIWLDLNTN 548
Query: 171 HFKEKFPGSI 180
F P ++
Sbjct: 549 LFNGTIPAAM 558
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 35/183 (19%)
Query: 12 LRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREP 70
L +LD+S N F++ IP LG+ ++L+H IS N L G + E
Sbjct: 202 LEFLDVSSNNFSTGIPF------------LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249
Query: 71 RSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNS-------- 122
+ +++S I + L+SLQ L +A N +G IP +S +
Sbjct: 250 KLLNISSNQFVGPIPPL---------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300
Query: 123 -SARKEVG----YTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177
S G + +LL S NNFSG LP + + + L+ L+L N F + P
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360
Query: 178 GSI 180
S+
Sbjct: 361 ESL 363
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 28/179 (15%)
Query: 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
IP+G N ++L ++ LS+N+ IP+WI R L NL LK +S N G +P
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGR--------LENLAILK--LSNNSFSGNIP 531
Query: 62 TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSL---QILDIACNNLSGAIPAC 118
G R SL W + + + N T+ + Q IA N ++G
Sbjct: 532 AELGDCR-----SLIWLDLNTNLF---------NGTIPAAMFKQSGKIAANFIAGKRYVY 577
Query: 119 ISNSSARKEV-GYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKF 176
I N +KE G ++L I N S P + + + + F N+ F
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 32/174 (18%)
Query: 23 NSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPT--SFGRLREPRSISLSWANK 80
NS I +S C+ S LTSL +S N L G + T S G L + N
Sbjct: 86 NSHINGSVSGFKCSAS-----LTSLD--LSRNSLSGPVTTLTSLGSCS-----GLKFLNV 133
Query: 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGA-------IPAC-------ISNSSARK 126
S L+ F L SL++LD++ N++SGA C IS +
Sbjct: 134 SSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192
Query: 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180
+V + +N L D S NNFS +P + D AL+ L++ N F +I
Sbjct: 193 DVDVSRCVN-LEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAI 243
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGR 66
+N S+ +LD+S N + IP+ I + LG +N + G +P G
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG----------HNDISGSIPDEVGD 678
Query: 67 LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP 116
LR + LS I + + L L +D++ NNLSG IP
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSA-------LTMLTEIDLSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 1 PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKL 60
PIP L+ L YL ++ + IP+++S+I T + SYN L G L
Sbjct: 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK----------TLVTLDFSYNALSGTL 141
Query: 61 PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120
P S L I+ S I + + SFS + + I+ N L+G IP +
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFS------KLFTSMTISRNRLTGKIPPTFA 195
Query: 121 N 121
N
Sbjct: 196 N 196
>pdb|2R7K|A Chain A, Crystal Structure Of Faicar Synthetase (Purp) From M.
Jannaschii Complexed With Amppcp And Aicar
pdb|2R7L|A Chain A, Crystal Structure Of Faicar Synthetase (Purp) From M.
Jannaschii Complexed With Atp And Aicar
pdb|2R7M|A Chain A, Crystal Structure Of Faicar Synthetase (Purp) From M.
Jannaschii Complexed With Amp
pdb|2R7N|A Chain A, Crystal Structure Of Faicar Synthetase (Purp) From M.
Jannaschii Complexed With Adp And Faicar
Length = 361
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
Query: 81 SQEILEIFHSFSRDNWTLR------SLQILDIACNNLSGAIPACISNSSARKEVGYTSIL 134
EILEIF +++D T+ SL IL A L G CI+ ++V Y
Sbjct: 4 KDEILEIFDKYNKDEITIATLGSHTSLHILKGA--KLEGFSTVCITMKG--RDVPYKR-- 57
Query: 135 NLLRITDR--SKNNFSGVLPAELVTDLVALRSLNLFHNHF 172
++ D+ +NFS + E+ L L S+ + H F
Sbjct: 58 --FKVADKFIYVDNFSDIKNEEIQEKLRELNSIVVPHGSF 95
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
+P +NLS+LR LDLS N+ S + + LG+ LK+ ++ + LP
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS------------LPAELGSCFQLKYFYFFDNMVTTLP 309
Query: 62 TSFGRL 67
FG L
Sbjct: 310 WEFGNL 315
>pdb|3D19|A Chain A, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|B Chain B, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|C Chain C, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|D Chain D, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|E Chain E, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|F Chain F, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
Length = 283
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 23 NSTIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLP 61
N T PE I R N + N+ K I +L KLP
Sbjct: 68 NETDPEQIKRFNAEVQQAATNIWGFKRKILGLILTCKLP 106
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 156 VTDLVALRSLNLFHNHFKEKFPGSIH 181
+T LV L L + NHF E PGS H
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFH 239
>pdb|3EFM|A Chain A, Structure Of The Alcaligin Outer Membrane Recepteur Faua
From Bordetella Pertussis
Length = 707
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 124 ARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNH---FKEKFP 177
+R Y+ + + D + F GV+ A+L D V S+ HNH F FP
Sbjct: 193 SRLVAAYSQGDSYVHFLDTRRRTFYGVVSADLTPDTVLTTSVEYQHNHSNGFGSGFP 249
>pdb|1KCF|A Chain A, Crystal Structure Of The Yeast Mitochondrial Holliday
Junction Resolvase, Ydc2
pdb|1KCF|B Chain B, Crystal Structure Of The Yeast Mitochondrial Holliday
Junction Resolvase, Ydc2
Length = 258
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 24 STIPEWISRINCTISSGLGNLTSLKHSISYNVLEGKLPTSFGRLREPRSISLSWANKSQE 83
+TIPEW R+N S L +L ++ N +E K+ F P+S WA+
Sbjct: 126 ATIPEWTLRVNMLESM----LYALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWAS---- 177
Query: 84 ILEIFHSFSR 93
+L SFS+
Sbjct: 178 VLNTKASFSK 187
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 27.3 bits (59), Expect = 4.6, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 3 PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSG--LGNLTSLKHSISYNV 55
P P ++ ++ S + N T P+WI+R +S+G + L S+ H Y++
Sbjct: 31 PGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDL 85
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 27.3 bits (59), Expect = 4.7, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 3 PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSG--LGNLTSLKHSISYNV 55
P P ++ ++ S + N T P+WI+R +S+G + L S+ H Y++
Sbjct: 31 PGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDL 85
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 3 PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSG--LGNLTSLKHSISYNV 55
P P ++ ++ S + N T P+WI+R +S+G + L S+ H Y++
Sbjct: 29 PGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDL 83
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Query: 2 IPNGP-ENLSSLRYLDLSDNQFNSTIP------EWISRINCTISSGLGNL 44
+P+G + L+SL+Y+ L DN ++ T P EWI++ + + + G++
Sbjct: 488 VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSV 537
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,325,125
Number of Sequences: 62578
Number of extensions: 194024
Number of successful extensions: 507
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 62
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)