Query 039018
Match_columns 181
No_of_seqs 126 out of 1191
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:31:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 6.4E-21 1.4E-25 164.8 9.9 168 2-177 156-349 (968)
2 PLN00113 leucine-rich repeat r 99.8 7.1E-21 1.5E-25 164.5 9.3 171 2-180 180-376 (968)
3 KOG0617 Ras suppressor protein 99.8 2.9E-21 6.2E-26 132.0 -2.9 152 6-181 29-193 (264)
4 KOG0617 Ras suppressor protein 99.7 1.5E-19 3.2E-24 123.7 -1.6 128 41-181 29-170 (264)
5 KOG0472 Leucine-rich repeat pr 99.6 2.3E-17 4.9E-22 125.8 0.7 45 133-180 433-477 (565)
6 KOG0444 Cytoskeletal regulator 99.6 1E-17 2.2E-22 134.2 -1.6 133 36-181 213-359 (1255)
7 KOG0472 Leucine-rich repeat pr 99.6 2.4E-17 5.3E-22 125.7 -3.1 165 2-181 106-295 (565)
8 KOG0444 Cytoskeletal regulator 99.6 4E-17 8.7E-22 130.8 -2.1 155 2-180 95-287 (1255)
9 KOG4194 Membrane glycoprotein 99.6 2.5E-16 5.5E-21 125.0 2.0 157 5-180 264-436 (873)
10 KOG4194 Membrane glycoprotein 99.5 6.9E-16 1.5E-20 122.6 -0.6 129 41-177 265-408 (873)
11 KOG0618 Serine/threonine phosp 99.4 3.4E-14 7.3E-19 117.8 3.0 158 2-171 302-487 (1081)
12 KOG0532 Leucine-rich repeat (L 99.4 2.1E-14 4.6E-19 113.7 -1.8 139 2-179 113-252 (722)
13 PLN03150 hypothetical protein; 99.4 2.3E-12 5E-17 106.9 8.3 112 47-177 420-532 (623)
14 PLN03150 hypothetical protein; 99.3 3.6E-12 7.7E-17 105.8 6.7 92 69-180 419-510 (623)
15 PLN03210 Resistant to P. syrin 99.3 3.9E-11 8.4E-16 105.8 11.2 44 135-179 778-821 (1153)
16 PRK15387 E3 ubiquitin-protein 99.2 1.6E-11 3.5E-16 103.0 6.8 75 99-179 382-464 (788)
17 PLN03210 Resistant to P. syrin 99.2 9.8E-11 2.1E-15 103.4 11.1 80 96-179 799-888 (1153)
18 PRK15370 E3 ubiquitin-protein 99.2 3.1E-11 6.7E-16 101.5 7.5 39 136-179 347-385 (754)
19 PF14580 LRR_9: Leucine-rich r 99.2 3.2E-11 7E-16 84.4 5.6 127 7-167 16-147 (175)
20 PRK15370 E3 ubiquitin-protein 99.2 4.4E-11 9.5E-16 100.6 6.1 155 10-179 220-406 (754)
21 KOG1259 Nischarin, modulator o 99.2 2.7E-12 6E-17 95.4 -1.4 133 7-177 281-415 (490)
22 KOG4237 Extracellular matrix p 99.2 2E-12 4.3E-17 98.8 -2.3 58 13-81 70-129 (498)
23 cd00116 LRR_RI Leucine-rich re 99.2 6.5E-12 1.4E-16 96.0 0.5 18 6-23 77-94 (319)
24 KOG0618 Serine/threonine phosp 99.2 1.3E-12 2.7E-17 108.7 -3.7 158 11-180 242-426 (1081)
25 cd00116 LRR_RI Leucine-rich re 99.1 1.1E-11 2.3E-16 94.9 -0.2 155 7-173 48-234 (319)
26 COG4886 Leucine-rich repeat (L 99.1 8.2E-11 1.8E-15 92.8 4.2 151 2-177 131-294 (394)
27 KOG0532 Leucine-rich repeat (L 99.0 7.4E-12 1.6E-16 99.6 -4.3 141 12-180 77-230 (722)
28 PF14580 LRR_9: Leucine-rich r 99.0 6E-10 1.3E-14 78.0 5.4 109 41-174 15-127 (175)
29 PRK15387 E3 ubiquitin-protein 99.0 2.1E-09 4.5E-14 90.6 8.7 142 2-173 216-375 (788)
30 COG4886 Leucine-rich repeat (L 99.0 4.6E-10 9.9E-15 88.6 4.2 148 6-178 112-272 (394)
31 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.3E-14 63.6 2.9 60 100-172 2-61 (61)
32 PF13855 LRR_8: Leucine rich r 98.9 4.2E-09 9E-14 61.0 4.2 61 68-147 1-61 (61)
33 KOG1259 Nischarin, modulator o 98.7 5.9E-09 1.3E-13 77.9 2.6 108 40-173 279-387 (490)
34 KOG4237 Extracellular matrix p 98.7 2.4E-09 5.1E-14 82.3 -0.3 107 50-178 73-181 (498)
35 KOG1909 Ran GTPase-activating 98.6 6.2E-09 1.3E-13 78.7 -1.3 161 5-173 87-311 (382)
36 KOG4658 Apoptotic ATPase [Sign 98.5 1.1E-07 2.4E-12 81.6 4.5 130 8-171 521-653 (889)
37 KOG1909 Ran GTPase-activating 98.5 1.1E-08 2.4E-13 77.3 -1.7 25 6-30 26-50 (382)
38 KOG1859 Leucine-rich repeat pr 98.5 4.3E-09 9.4E-14 86.5 -5.0 126 11-173 165-292 (1096)
39 PF12799 LRR_4: Leucine Rich r 98.4 1.3E-07 2.8E-12 50.8 2.1 39 136-177 2-40 (44)
40 KOG1859 Leucine-rich repeat pr 98.4 2.3E-08 5E-13 82.4 -2.0 144 3-174 102-268 (1096)
41 KOG4579 Leucine-rich repeat (L 98.4 4.6E-08 9.9E-13 65.2 -1.1 104 50-177 33-139 (177)
42 KOG4579 Leucine-rich repeat (L 98.3 9.4E-08 2E-12 63.7 0.2 90 69-180 28-119 (177)
43 KOG3207 Beta-tubulin folding c 98.3 2.3E-07 5E-12 72.3 1.6 67 7-82 143-211 (505)
44 KOG0531 Protein phosphatase 1, 98.3 2.5E-07 5.4E-12 73.7 1.0 142 6-173 91-268 (414)
45 COG5238 RNA1 Ran GTPase-activa 98.1 4.6E-07 9.9E-12 67.0 -0.2 166 8-175 28-257 (388)
46 KOG0531 Protein phosphatase 1, 98.1 7E-07 1.5E-11 71.2 -0.1 107 41-173 91-199 (414)
47 PF12799 LRR_4: Leucine Rich r 98.0 9.7E-06 2.1E-10 43.5 3.7 36 69-112 2-37 (44)
48 KOG3207 Beta-tubulin folding c 98.0 1E-06 2.2E-11 68.9 -0.3 38 134-173 300-339 (505)
49 KOG4658 Apoptotic ATPase [Sign 97.9 1.9E-05 4.1E-10 68.2 4.7 110 45-177 523-635 (889)
50 KOG3665 ZYG-1-like serine/thre 97.5 8.2E-05 1.8E-09 62.8 3.9 121 45-175 122-265 (699)
51 KOG1644 U2-associated snRNP A' 97.5 0.00013 2.9E-09 51.9 4.0 54 50-112 48-101 (233)
52 KOG2739 Leucine-rich acidic nu 97.5 0.00014 3E-09 53.5 3.6 104 43-167 41-150 (260)
53 KOG2120 SCF ubiquitin ligase, 97.4 9.1E-06 2E-10 61.0 -3.0 143 11-171 186-349 (419)
54 PRK15386 type III secretion pr 97.3 0.00045 9.8E-09 54.7 5.5 129 8-170 50-187 (426)
55 KOG3665 ZYG-1-like serine/thre 97.2 0.00038 8.2E-09 58.9 3.5 16 64-79 216-231 (699)
56 KOG2982 Uncharacterized conser 97.1 0.00012 2.7E-09 55.1 0.4 43 133-176 222-265 (418)
57 KOG1644 U2-associated snRNP A' 97.1 0.00072 1.6E-08 48.2 4.2 105 11-144 43-149 (233)
58 COG5238 RNA1 Ran GTPase-activa 97.1 0.00032 6.9E-09 52.3 2.2 71 4-81 86-170 (388)
59 PRK15386 type III secretion pr 97.1 0.0019 4.1E-08 51.3 6.4 115 42-173 49-169 (426)
60 PF13306 LRR_5: Leucine rich r 97.0 0.0045 9.8E-08 40.7 6.7 123 4-163 6-129 (129)
61 PF00560 LRR_1: Leucine Rich R 96.9 0.00047 1E-08 31.0 0.9 18 162-180 2-19 (22)
62 PF00560 LRR_1: Leucine Rich R 96.1 0.0028 6.2E-08 28.4 1.1 12 137-148 2-13 (22)
63 PF13504 LRR_7: Leucine rich r 96.1 0.0033 7.2E-08 26.3 1.1 13 161-173 2-14 (17)
64 KOG2982 Uncharacterized conser 96.0 0.0029 6.3E-08 48.0 1.1 39 67-112 70-110 (418)
65 KOG2739 Leucine-rich acidic nu 95.7 0.0096 2.1E-07 44.0 2.8 66 41-112 61-129 (260)
66 KOG2120 SCF ubiquitin ligase, 95.5 0.00098 2.1E-08 50.4 -2.9 86 69-173 186-273 (419)
67 KOG2123 Uncharacterized conser 95.4 0.0039 8.4E-08 46.9 -0.2 95 50-166 25-123 (388)
68 smart00369 LRR_TYP Leucine-ric 95.1 0.023 4.9E-07 26.4 2.0 20 135-155 2-21 (26)
69 smart00370 LRR Leucine-rich re 95.1 0.023 4.9E-07 26.4 2.0 20 135-155 2-21 (26)
70 KOG2123 Uncharacterized conser 95.1 0.003 6.5E-08 47.4 -1.6 64 8-85 39-105 (388)
71 smart00369 LRR_TYP Leucine-ric 94.9 0.016 3.4E-07 27.0 1.2 20 159-179 1-20 (26)
72 smart00370 LRR Leucine-rich re 94.9 0.016 3.4E-07 27.0 1.2 20 159-179 1-20 (26)
73 PF13306 LRR_5: Leucine rich r 93.8 0.17 3.6E-06 33.1 4.8 105 40-169 7-112 (129)
74 PF13516 LRR_6: Leucine Rich r 93.6 0.014 3.1E-07 26.5 -0.5 20 9-28 1-20 (24)
75 KOG0473 Leucine-rich repeat pr 92.7 0.0023 5.1E-08 46.8 -5.8 87 64-173 38-124 (326)
76 KOG3864 Uncharacterized conser 92.3 0.071 1.5E-06 38.3 1.3 33 135-168 151-184 (221)
77 smart00364 LRR_BAC Leucine-ric 91.6 0.12 2.6E-06 24.1 1.2 17 161-178 3-19 (26)
78 KOG0473 Leucine-rich repeat pr 91.3 0.013 2.8E-07 43.1 -3.3 45 36-81 79-124 (326)
79 smart00365 LRR_SD22 Leucine-ri 87.0 0.51 1.1E-05 22.0 1.4 15 9-23 1-15 (26)
80 KOG4308 LRR-containing protein 86.3 0.015 3.3E-07 47.3 -6.6 37 136-173 263-303 (478)
81 smart00368 LRR_RI Leucine rich 85.4 0.62 1.3E-05 22.0 1.4 14 10-23 2-15 (28)
82 KOG1947 Leucine rich repeat pr 84.5 0.66 1.4E-05 37.4 2.0 65 96-171 240-306 (482)
83 KOG3864 Uncharacterized conser 79.1 0.66 1.4E-05 33.4 0.1 73 46-124 102-177 (221)
84 smart00367 LRR_CC Leucine-rich 60.8 6.1 0.00013 17.9 1.2 15 9-23 1-16 (26)
85 KOG1947 Leucine rich repeat pr 59.5 5.4 0.00012 32.1 1.5 91 67-173 187-283 (482)
86 KOG4308 LRR-containing protein 56.7 0.58 1.3E-05 38.3 -4.5 94 9-112 203-303 (478)
87 KOG3763 mRNA export factor TAP 46.7 21 0.00046 29.9 2.9 67 67-149 217-284 (585)
88 KOG3763 mRNA export factor TAP 37.6 22 0.00047 29.8 1.7 67 96-175 215-285 (585)
89 smart00446 LRRcap occurring C- 28.6 41 0.00089 15.6 1.1 15 155-169 8-22 (26)
90 TIGR00864 PCC polycystin catio 24.7 49 0.0011 33.4 1.9 17 41-57 15-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=6.4e-21 Score=164.79 Aligned_cols=168 Identities=33% Similarity=0.472 Sum_probs=81.4
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCC
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRL 67 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l 67 (181)
+|..+.++++|+.|++++|.+.+.+|..+.. +.+.+|..++++++|+. ++++|.+.+..|..++.+
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 3445555566666666666655555554433 22234455555555555 555555555555555555
Q ss_pred CCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCC
Q 039018 68 REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILN 135 (181)
Q Consensus 68 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~ 135 (181)
++|++|++++|.+.+..|..+ ..+.+|+.|++++|.+++.+|..+..+++|++ .+..| .++
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l-------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSL-------GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred CCCCEEECcCceeccccChhH-------hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 555555555555555555554 44444444444444444444444444444444 22222 233
Q ss_pred cccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018 136 LLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 136 ~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 177 (181)
+|++|++++|.+.+.+|..+ ..+++|+.|++++|.+++.+|
T Consensus 309 ~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 309 NLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred CCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcCcCC
Confidence 34444444444443344333 444444444444444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=7.1e-21 Score=164.51 Aligned_cols=171 Identities=32% Similarity=0.484 Sum_probs=138.4
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCC
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRL 67 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l 67 (181)
+|..+.++++|++|++++|.+.+.+|+.+.. +.+.+|..++++++|++ ++++|.+.+..|..++.+
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 5778888999999999999988888877765 34567888889999999 999999988888889999
Q ss_pred CCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCC
Q 039018 68 REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILN 135 (181)
Q Consensus 68 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~ 135 (181)
++|++|++++|.+.+..|..+ ..+.+|+.|++++|.+++.+|..+..+++|++ .+.+| .++
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l-------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 332 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSI-------FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332 (968)
T ss_pred CCCCEEECcCCeeeccCchhH-------hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCC
Confidence 999999999998888888888 77888888888888888778888888888877 44444 466
Q ss_pred cccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018 136 LLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 136 ~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
+|+.|++++|.+.+.+|..+ +.+++|+.|++++|.+++.+|.++
T Consensus 333 ~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 333 RLQVLQLWSNKFSGEIPKNL-GKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred CCCEEECcCCCCcCcCChHH-hCCCCCcEEECCCCeeEeeCChhH
Confidence 77888888888877777766 777888888888888777776543
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=2.9e-21 Score=132.05 Aligned_cols=152 Identities=26% Similarity=0.389 Sum_probs=106.9
Q ss_pred CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI 84 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 84 (181)
+.++.+++.|-+|.|.++ .+|+.+.++.+|++ .+.+|+++ ++|.+++.+++|+.|+++.|++. ..
T Consensus 29 Lf~~s~ITrLtLSHNKl~------------~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~l 94 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT------------VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-IL 94 (264)
T ss_pred ccchhhhhhhhcccCcee------------ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cC
Confidence 345566666777777776 44555666667766 67777766 66666777777777777666654 55
Q ss_pred hhHhhhccCCCCCCCCccEEEcccccce-eecCchhhccccccc-ccccc----------cCCcccEEEccCCccccCCC
Q 039018 85 LEIFHSFSRDNWTLRSLQILDIACNNLS-GAIPACISNSSARKE-VGYTS----------ILNLLRITDRSKNNFSGVLP 152 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~p~~~~~~~~l~~-~~~~n----------~l~~L~~l~l~~n~~~~~~p 152 (181)
|..| +.++.|+.||+.+|.+. ..+|+.|..|..|+- ++..| .+++|++|.+..|.+. .+|
T Consensus 95 prgf-------gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lp 166 (264)
T KOG0617|consen 95 PRGF-------GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLP 166 (264)
T ss_pred cccc-------CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCc
Confidence 6666 66666666666666554 245666666655555 33333 5777999999999888 789
Q ss_pred hhHHHhcccCCEeEecCCcccccCCCCCC
Q 039018 153 AELVTDLVALRSLNLFHNHFKEKFPGSIH 181 (181)
Q Consensus 153 ~~~~~~l~~L~~L~L~~n~l~~~~p~~i~ 181 (181)
+++ +.+..|+.|++.+|+++ .+|+.++
T Consensus 167 kei-g~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 167 KEI-GDLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred HHH-HHHHHHHHHhcccceee-ecChhhh
Confidence 999 99999999999999999 8888764
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=1.5e-19 Score=123.72 Aligned_cols=128 Identities=24% Similarity=0.352 Sum_probs=111.2
Q ss_pred ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018 41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119 (181)
Q Consensus 41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~ 119 (181)
+-++..+.. .+++|+++ .+|..+..+.+|+.|++.+|++. .+|..+ ..+++|+.|+++-|++. .+|..|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-------ssl~klr~lnvgmnrl~-~lprgf 98 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-------SSLPKLRILNVGMNRLN-ILPRGF 98 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-------hhchhhhheecchhhhh-cCcccc
Confidence 445666667 79999999 78889999999999999999987 778888 99999999999999998 999999
Q ss_pred hccccccc-ccccc------------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCCC
Q 039018 120 SNSSARKE-VGYTS------------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH 181 (181)
Q Consensus 120 ~~~~~l~~-~~~~n------------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i~ 181 (181)
+..+.|.. ++..| .+..|+.|.++.|.+. .+|..+ +++++|+.|.+..|.+- ++|..||
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dv-g~lt~lqil~lrdndll-~lpkeig 170 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDV-GKLTNLQILSLRDNDLL-SLPKEIG 170 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhh-hhhcceeEEeeccCchh-hCcHHHH
Confidence 99999888 44444 5556888999999998 899999 99999999999999998 8888764
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.65 E-value=2.3e-17 Score=125.83 Aligned_cols=45 Identities=38% Similarity=0.556 Sum_probs=38.8
Q ss_pred cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018 133 ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 133 ~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
.+++|+.|++++|.+. .+|.++ +.+..||.+++++|++. .+|+++
T Consensus 433 ~l~kLt~L~L~NN~Ln-~LP~e~-~~lv~Lq~LnlS~NrFr-~lP~~~ 477 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLN-DLPEEM-GSLVRLQTLNLSFNRFR-MLPECL 477 (565)
T ss_pred hhhcceeeecccchhh-hcchhh-hhhhhhheecccccccc-cchHHH
Confidence 7788899999999887 889988 88888999999999998 777653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.64 E-value=1e-17 Score=134.19 Aligned_cols=133 Identities=24% Similarity=0.375 Sum_probs=102.8
Q ss_pred ccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceee
Q 039018 36 TISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGA 114 (181)
Q Consensus 36 ~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 114 (181)
.+|.++..+.+|+. +++.|.+. .+|+.+..+++|+.|++++|.++. +.... ....+++.|++++|+++ .
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~-------~~W~~lEtLNlSrNQLt-~ 282 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTE-------GEWENLETLNLSRNQLT-V 282 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccH-------HHHhhhhhhccccchhc-c
Confidence 47778888888888 88888888 788888888899999999888863 33333 45677778888888887 7
Q ss_pred cCchhhcccccccccccc-------------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCCC
Q 039018 115 IPACISNSSARKEVGYTS-------------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH 181 (181)
Q Consensus 115 ~p~~~~~~~~l~~~~~~n-------------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i~ 181 (181)
+|+.+..++.|+.+..++ .+..|+.+..++|.+. -+|+.+ ..|..|+.|.|++|++- ++|+.|.
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEgl-cRC~kL~kL~L~~NrLi-TLPeaIH 359 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGL-CRCVKLQKLKLDHNRLI-TLPEAIH 359 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhh-hhhHHHHHhccccccee-echhhhh
Confidence 888888888877744333 5556778888888887 778887 88888888888888887 7887763
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=2.4e-17 Score=125.65 Aligned_cols=165 Identities=25% Similarity=0.328 Sum_probs=116.8
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCCCC
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLR 68 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~ 68 (181)
+|+++.++..+..+++++|.+. .+|+.++. ....+|.++..+.++.. ++.+|.+. .+|+..-.|+
T Consensus 106 lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~ 183 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMK 183 (565)
T ss_pred ccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHHH
Confidence 5666666666666666666666 44444443 12245556666666666 66666666 3333333466
Q ss_pred CCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccc------------cCCc
Q 039018 69 EPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTS------------ILNL 136 (181)
Q Consensus 69 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n------------~l~~ 136 (181)
.|+.+|...|.+. .+|+.+ +.+.+|..|++..|++. .+| +|..|..|+++..++ .+.+
T Consensus 184 ~L~~ld~~~N~L~-tlP~~l-------g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~ 253 (565)
T KOG0472|consen 184 RLKHLDCNSNLLE-TLPPEL-------GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNS 253 (565)
T ss_pred HHHhcccchhhhh-cCChhh-------cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhccccc
Confidence 6666666666544 556666 88888888888888886 677 678888888854443 7888
Q ss_pred ccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCCC
Q 039018 137 LRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH 181 (181)
Q Consensus 137 L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i~ 181 (181)
+.+||+..|++. ..|.++ ..+.+|.+||+|+|.++ .+|.+.|
T Consensus 254 l~vLDLRdNklk-e~Pde~-clLrsL~rLDlSNN~is-~Lp~sLg 295 (565)
T KOG0472|consen 254 LLVLDLRDNKLK-EVPDEI-CLLRSLERLDLSNNDIS-SLPYSLG 295 (565)
T ss_pred ceeeeccccccc-cCchHH-HHhhhhhhhcccCCccc-cCCcccc
Confidence 999999999999 889998 89999999999999999 7887654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.60 E-value=4e-17 Score=130.82 Aligned_cols=155 Identities=26% Similarity=0.326 Sum_probs=87.0
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcc-cCCCCCCcEEEcCCCc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTS-FGRLREPRSISLSWAN 79 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~ 79 (181)
||+.++++..|++||||.|+++ .+|..+..-+++-+ ++++|+++ .+|.. +.+++-|-+||+++|+
T Consensus 95 iP~diF~l~dLt~lDLShNqL~------------EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLR------------EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred CCchhcccccceeeecchhhhh------------hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 5566666666666666666665 23333344444445 56666666 44443 3456666666666666
Q ss_pred ccccchhHhhhccCCCCCCCCccEEEcccccce-------------------------eecCchhhccccccc-ccccc-
Q 039018 80 KSQEILEIFHSFSRDNWTLRSLQILDIACNNLS-------------------------GAIPACISNSSARKE-VGYTS- 132 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-------------------------~~~p~~~~~~~~l~~-~~~~n- 132 (181)
+. .+|..+ .++..|+.|.+++|++. .-+|.++..+.+|.. +++.|
T Consensus 162 Le-~LPPQ~-------RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 162 LE-MLPPQI-------RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hh-hcCHHH-------HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 54 344444 34444444444444331 124444555555554 44443
Q ss_pred ---------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018 133 ---------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 133 ---------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
.+.+|+.|++|+|+|+ .+-..+ +.+.+|..|++|+|+++ .+|.++
T Consensus 234 Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~-~~W~~lEtLNlSrNQLt-~LP~av 287 (1255)
T KOG0444|consen 234 LPIVPECLYKLRNLRRLNLSGNKIT-ELNMTE-GEWENLETLNLSRNQLT-VLPDAV 287 (1255)
T ss_pred CCcchHHHhhhhhhheeccCcCcee-eeeccH-HHHhhhhhhccccchhc-cchHHH
Confidence 5556677777777776 555555 66777777777777777 677655
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.60 E-value=2.5e-16 Score=125.03 Aligned_cols=157 Identities=21% Similarity=0.216 Sum_probs=117.6
Q ss_pred CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccccc
Q 039018 5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQE 83 (181)
Q Consensus 5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 83 (181)
.|..|.+++.|+|..|++..... .++-++++|+. ++++|.+....++.+...++|++|+++.|.+...
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~-----------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNE-----------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred ceeeecccceeecccchhhhhhc-----------ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 34556667777777777762222 34567888888 9999999988888888889999999999988866
Q ss_pred chhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc--------------cCCcccEEEccCCccc
Q 039018 84 ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS--------------ILNLLRITDRSKNNFS 148 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n--------------~l~~L~~l~l~~n~~~ 148 (181)
.+..| ..+..|+.|.++.|.++..-...|..+++|+. ++..| .+++|+.|.+.+|++.
T Consensus 333 ~~~sf-------~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 333 DEGSF-------RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred ChhHH-------HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 66777 56677777777777776444456667777766 44444 7888999999999998
Q ss_pred cCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018 149 GVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
.+|+--|.++++|++|||.+|.+...-|.+|
T Consensus 406 -~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 406 -SIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred -ecchhhhccCcccceecCCCCcceeeccccc
Confidence 7776555999999999999999985444443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.53 E-value=6.9e-16 Score=122.61 Aligned_cols=129 Identities=20% Similarity=0.193 Sum_probs=80.5
Q ss_pred ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018 41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119 (181)
Q Consensus 41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~ 119 (181)
|..|.++++ ++..|.+...--..+.++++|+.|++++|.+....++.+ .-+++|..|++++|+++.--+..|
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W-------sftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW-------SFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh-------hhcccceeEeccccccccCChhHH
Confidence 344555555 566666654444455566666666666666666666666 566777777777777762223456
Q ss_pred hccccccc-ccccc-----------cCCcccEEEccCCccccCCCh--hHHHhcccCCEeEecCCcccccCC
Q 039018 120 SNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPA--ELVTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 120 ~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~p 177 (181)
..++.|.+ .+..| ++++|+.|||++|.++..+.+ ..|.+++.|+.|.|.+|++. .||
T Consensus 338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~ 408 (873)
T KOG4194|consen 338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIP 408 (873)
T ss_pred HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecc
Confidence 66666555 34444 667777777777777654332 23366777788888888777 555
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=3.4e-14 Score=117.80 Aligned_cols=158 Identities=25% Similarity=0.321 Sum_probs=123.5
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccc--------------cccccCCccc--ccccchh-ccccccccCCCCccc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR--------------INCTISSGLG--NLTSLKH-SISYNVLEGKLPTSF 64 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~--------------~~~~l~~~l~--~l~~L~~-~l~~n~~~~~~~~~~ 64 (181)
+|+...++++|++|++..|.+. .+|+.+.. .....| ..+ .+..|+. ++.+|.+++..-..+
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccc-cccchhhHHHHHHHHhcCcccccchhhh
Confidence 6888899999999999999998 77764433 000111 122 3567778 899999998877788
Q ss_pred CCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccc-cccc---------cC
Q 039018 65 GRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEV-GYTS---------IL 134 (181)
Q Consensus 65 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~-~~~n---------~l 134 (181)
.+.++|++|++++|++.......+ .++..|+.|++|+|+++ .+|.++..++.|+++ .-+| .+
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~-------~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l 451 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKL-------RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQL 451 (1081)
T ss_pred ccccceeeeeecccccccCCHHHH-------hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhc
Confidence 899999999999999874333445 78999999999999999 999999999999884 3334 78
Q ss_pred CcccEEEccCCccccC-CChhHHHhcccCCEeEecCCc
Q 039018 135 NLLRITDRSKNNFSGV-LPAELVTDLVALRSLNLFHNH 171 (181)
Q Consensus 135 ~~L~~l~l~~n~~~~~-~p~~~~~~l~~L~~L~L~~n~ 171 (181)
+.|+.+|++.|+++.. +|.. ...++|++|||++|.
T Consensus 452 ~qL~~lDlS~N~L~~~~l~~~--~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVTLPEA--LPSPNLKYLDLSGNT 487 (1081)
T ss_pred CcceEEecccchhhhhhhhhh--CCCcccceeeccCCc
Confidence 8899999999999843 3322 344899999999987
No 12
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.39 E-value=2.1e-14 Score=113.75 Aligned_cols=139 Identities=32% Similarity=0.432 Sum_probs=101.8
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
||.++.++..|+.+||+.|++. -+| ..++.++ |++ .+++|++. .+|+.++....|..||.+.|.+
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS-~lp-----------~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLS-HLP-----------DGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred cchhhhhhhHHHHhhhccchhh-cCC-----------hhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhh
Confidence 5667777777777777777776 333 3333332 455 66777776 6777777777777777777776
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV 160 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~ 160 (181)
. .+|..+ +.+.+|+.+.+..|++. .+|+++..++ |..||+|+|+++ .+|-++ .+|.
T Consensus 179 ~-slpsql-------~~l~slr~l~vrRn~l~-~lp~El~~Lp-------------Li~lDfScNkis-~iPv~f-r~m~ 234 (722)
T KOG0532|consen 179 Q-SLPSQL-------GYLTSLRDLNVRRNHLE-DLPEELCSLP-------------LIRLDFSCNKIS-YLPVDF-RKMR 234 (722)
T ss_pred h-hchHHh-------hhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------eeeeecccCcee-ecchhh-hhhh
Confidence 5 555666 67777777777777776 6777776544 889999999999 899888 9999
Q ss_pred cCCEeEecCCcccccCCCC
Q 039018 161 ALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 161 ~L~~L~L~~n~l~~~~p~~ 179 (181)
.|++|-|.+|.+. .-|..
T Consensus 235 ~Lq~l~LenNPLq-SPPAq 252 (722)
T KOG0532|consen 235 HLQVLQLENNPLQ-SPPAQ 252 (722)
T ss_pred hheeeeeccCCCC-CChHH
Confidence 9999999999998 55543
No 13
>PLN03150 hypothetical protein; Provisional
Probab=99.36 E-value=2.3e-12 Score=106.88 Aligned_cols=112 Identities=29% Similarity=0.417 Sum_probs=84.9
Q ss_pred chh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccc
Q 039018 47 LKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125 (181)
Q Consensus 47 L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l 125 (181)
++. ++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+ ..+.+|+.|++++|.+++.+|+.++.++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-------~~l~~L~~LdLs~N~lsg~iP~~l~~L~-- 490 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-------GSITSLEVLDLSYNSFNGSIPESLGQLT-- 490 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-------hCCCCCCEEECCCCCCCCCCchHHhcCC--
Confidence 444 677888888888888888888888888888887888777 7888888888888888888888877744
Q ss_pred ccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018 126 KEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 126 ~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 177 (181)
+|++|++++|.+++.+|..+.....++..+++.+|...+..|
T Consensus 491 ----------~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 491 ----------SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ----------CCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 488888888888888887772223466777888776554444
No 14
>PLN03150 hypothetical protein; Provisional
Probab=99.31 E-value=3.6e-12 Score=105.78 Aligned_cols=92 Identities=28% Similarity=0.419 Sum_probs=85.2
Q ss_pred CCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccc
Q 039018 69 EPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFS 148 (181)
Q Consensus 69 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~ 148 (181)
.++.|++++|.+.+..|..+ ..+.+|+.|++++|.++|.+|..++.++ +|+.|++++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-------~~L~~L~~L~Ls~N~l~g~iP~~~~~l~------------~L~~LdLs~N~ls 479 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-------SKLRHLQSINLSGNSIRGNIPPSLGSIT------------SLEVLDLSYNSFN 479 (623)
T ss_pred EEEEEECCCCCccccCCHHH-------hCCCCCCEEECCCCcccCcCChHHhCCC------------CCCEEECCCCCCC
Confidence 37889999999999999999 9999999999999999999999998855 4999999999999
Q ss_pred cCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018 149 GVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
+.+|+.+ +.+++|+.|+|++|.++|.+|..+
T Consensus 480 g~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 480 GSIPESL-GQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred CCCchHH-hcCCCCCEEECcCCcccccCChHH
Confidence 9999988 999999999999999999999865
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.27 E-value=3.9e-11 Score=105.84 Aligned_cols=44 Identities=20% Similarity=0.089 Sum_probs=33.9
Q ss_pred CcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018 135 NLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 135 ~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~ 179 (181)
++|+.|++++|...+.+|..+ +.+++|+.|++++|...+.+|..
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCeeCCC
Confidence 467888888887666788887 88999999999887655577754
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.24 E-value=1.6e-11 Score=103.01 Aligned_cols=75 Identities=24% Similarity=0.249 Sum_probs=55.1
Q ss_pred CCccEEEcccccceeecCchhhccccccc-ccccc-------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCC
Q 039018 99 RSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170 (181)
Q Consensus 99 ~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n 170 (181)
.+|+.|++++|+++ .+|... ++|+. .+.+| ...+|+.|++++|+++ .+|..+ ..+++|+.++|++|
T Consensus 382 ~~L~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt-~LP~sl-~~L~~L~~LdLs~N 455 (788)
T PRK15387 382 SGLKELIVSGNRLT-SLPVLP---SELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESL-IHLSSETTVNLEGN 455 (788)
T ss_pred cccceEEecCCccc-CCCCcc---cCCCEEEccCCcCCCCCcchhhhhhhhhccCccc-ccChHH-hhccCCCeEECCCC
Confidence 45777888888777 556533 33444 44444 1234788999999998 899888 89999999999999
Q ss_pred cccccCCCC
Q 039018 171 HFKEKFPGS 179 (181)
Q Consensus 171 ~l~~~~p~~ 179 (181)
++++..|..
T Consensus 456 ~Ls~~~~~~ 464 (788)
T PRK15387 456 PLSERTLQA 464 (788)
T ss_pred CCCchHHHH
Confidence 999876543
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.22 E-value=9.8e-11 Score=103.35 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=50.7
Q ss_pred CCCCCccEEEcccccceeecCchhhccccccc-ccccc--------cCCcccEEEccCCccccCCChhHHHhcccCCEeE
Q 039018 96 WTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS--------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLN 166 (181)
Q Consensus 96 ~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n--------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~ 166 (181)
+.+++|+.|++++|...+.+|... .+++|++ .+.++ ...+|+.|++++|.++ .+|.++ ..+++|+.|+
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si-~~l~~L~~L~ 875 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWI-EKFSNLSFLD 875 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHH-hcCCCCCEEE
Confidence 566666666666653333555543 3455555 33332 2345778888888887 788887 8899999999
Q ss_pred ecC-CcccccCCCC
Q 039018 167 LFH-NHFKEKFPGS 179 (181)
Q Consensus 167 L~~-n~l~~~~p~~ 179 (181)
+++ +.+. .+|..
T Consensus 876 L~~C~~L~-~l~~~ 888 (1153)
T PLN03210 876 MNGCNNLQ-RVSLN 888 (1153)
T ss_pred CCCCCCcC-ccCcc
Confidence 987 4444 56654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.22 E-value=3.1e-11 Score=101.45 Aligned_cols=39 Identities=31% Similarity=0.518 Sum_probs=26.4
Q ss_pred cccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018 136 LLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 136 ~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~ 179 (181)
+|+.|++++|+++ .+|..+ .+.|+.|++++|.++ .+|+.
T Consensus 347 sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred cccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCHh
Confidence 5677777777776 566544 256777777777777 56654
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=3.2e-11 Score=84.37 Aligned_cols=127 Identities=28% Similarity=0.299 Sum_probs=47.5
Q ss_pred CCCcCCCeeeccCcccccccCccccccccccCCccc-ccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018 7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLG-NLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI 84 (181)
Q Consensus 7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~-~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 84 (181)
.+...++.|+|++|.|. .+. .++ .+.+|+. ++++|.+. .+. .+..+++|+.|++++|.+....
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie------------~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE------------NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-C
T ss_pred ccccccccccccccccc-ccc------------chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccc
Confidence 34556888999999998 222 244 4678888 99999998 443 5778899999999999987543
Q ss_pred hhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCCh---hHHHhccc
Q 039018 85 LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA---ELVTDLVA 161 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~---~~~~~l~~ 161 (181)
+.+. ..+++|+.|++++|+|. .+. .+..+.. +++|+.|++.+|.++. .+. .++..+|+
T Consensus 81 -~~l~------~~lp~L~~L~L~~N~I~-~l~-~l~~L~~---------l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~ 141 (175)
T PF14580_consen 81 -EGLD------KNLPNLQELYLSNNKIS-DLN-ELEPLSS---------LPKLRVLSLEGNPVCE-KKNYRLFVIYKLPS 141 (175)
T ss_dssp -HHHH------HH-TT--EEE-TTS----SCC-CCGGGGG----------TT--EEE-TT-GGGG-STTHHHHHHHH-TT
T ss_pred -cchH------HhCCcCCEEECcCCcCC-ChH-HhHHHHc---------CCCcceeeccCCcccc-hhhHHHHHHHHcCh
Confidence 3330 35789999999999986 322 2333333 6669999999999984 343 34478999
Q ss_pred CCEeEe
Q 039018 162 LRSLNL 167 (181)
Q Consensus 162 L~~L~L 167 (181)
|+.||-
T Consensus 142 Lk~LD~ 147 (175)
T PF14580_consen 142 LKVLDG 147 (175)
T ss_dssp -SEETT
T ss_pred hheeCC
Confidence 999873
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.17 E-value=4.4e-11 Score=100.56 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=90.3
Q ss_pred cCCCeeeccCcccccccCccccc----------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCC
Q 039018 10 SSLRYLDLSDNQFNSTIPEWISR----------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWA 78 (181)
Q Consensus 10 ~~L~~L~ls~n~i~~~~p~~~~~----------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 78 (181)
.+|+.|++++|.++ .+|..+.. -...+|..+. .+|+. ++++|.+. .+|..+. .+|++|++++|
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDN 293 (754)
T ss_pred cCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCC
Confidence 46788888888777 45543321 0112333332 35666 77777777 5665543 47788888877
Q ss_pred cccccchh----Hhhhcc------CCC--CCCCCccEEEcccccceeecCchhhccccccc-ccccc--------cCCcc
Q 039018 79 NKSQEILE----IFHSFS------RDN--WTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS--------ILNLL 137 (181)
Q Consensus 79 ~~~~~~~~----~~~~~~------~~~--~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n--------~l~~L 137 (181)
.+.. +|. .+..+- ..+ ....+|+.|++++|.++ .+|..+. ++|+. .+.+| ..++|
T Consensus 294 ~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~L 369 (754)
T PRK15370 294 SIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITVLPETLPPTI 369 (754)
T ss_pred cccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCCcCChhhcCCc
Confidence 7653 222 111110 000 11245777777777776 4565443 45555 34444 23467
Q ss_pred cEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018 138 RITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 138 ~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~ 179 (181)
+.|++++|.++ .+|..+ . ..|+.|++++|.++ .+|++
T Consensus 370 ~~LdLs~N~Lt-~LP~~l-~--~sL~~LdLs~N~L~-~LP~s 406 (754)
T PRK15370 370 TTLDVSRNALT-NLPENL-P--AALQIMQASRNNLV-RLPES 406 (754)
T ss_pred CEEECCCCcCC-CCCHhH-H--HHHHHHhhccCCcc-cCchh
Confidence 88888888888 677766 3 35788888888888 67754
No 21
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=2.7e-12 Score=95.36 Aligned_cols=133 Identities=22% Similarity=0.252 Sum_probs=88.9
Q ss_pred CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch
Q 039018 7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL 85 (181)
Q Consensus 7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 85 (181)
-.|+.|+.+|+|+|.|+ .+.+++.-.+.++. ++++|.+. .+ +++..+++|+.||+++|.+.....
T Consensus 281 dTWq~LtelDLS~N~I~------------~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~G 346 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT------------QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVG 346 (490)
T ss_pred chHhhhhhccccccchh------------hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhh
Confidence 34566777777777776 34445555667777 77777776 33 236677777777777776653221
Q ss_pred hHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccC-CChhHHHhcccCCE
Q 039018 86 EIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGV-LPAELVTDLVALRS 164 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~-~p~~~~~~l~~L~~ 164 (181)
++ .++.+++.|.++.|.+. .+..+.. +.+|..||+++|+|..- -...+ +++|.|.+
T Consensus 347 --wh------~KLGNIKtL~La~N~iE-----~LSGL~K---------LYSLvnLDl~~N~Ie~ldeV~~I-G~LPCLE~ 403 (490)
T KOG1259|consen 347 --WH------LKLGNIKTLKLAQNKIE-----TLSGLRK---------LYSLVNLDLSSNQIEELDEVNHI-GNLPCLET 403 (490)
T ss_pred --hH------hhhcCEeeeehhhhhHh-----hhhhhHh---------hhhheeccccccchhhHHHhccc-ccccHHHH
Confidence 11 46677777777777764 2222222 66799999999999731 12356 89999999
Q ss_pred eEecCCcccccCC
Q 039018 165 LNLFHNHFKEKFP 177 (181)
Q Consensus 165 L~L~~n~l~~~~p 177 (181)
+.|.+|.+++ +|
T Consensus 404 l~L~~NPl~~-~v 415 (490)
T KOG1259|consen 404 LRLTGNPLAG-SV 415 (490)
T ss_pred HhhcCCCccc-cc
Confidence 9999999984 44
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=2e-12 Score=98.80 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=30.5
Q ss_pred CeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcC-CCccc
Q 039018 13 RYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLS-WANKS 81 (181)
Q Consensus 13 ~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~-~n~~~ 81 (181)
..++|..|+|+ .+|+ .+|+.+++|+. +++.|.++..-|+.|.++.++..|-+. +|+|+
T Consensus 70 veirLdqN~I~-~iP~----------~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 70 VEIRLDQNQIS-SIPP----------GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEEeccCCcc-cCCh----------hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 34555556655 4443 33555556655 666666665555555555555444332 25444
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=6.5e-12 Score=96.04 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=10.1
Q ss_pred CCCCcCCCeeeccCcccc
Q 039018 6 PENLSSLRYLDLSDNQFN 23 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~ 23 (181)
+..+++|+.|++++|.+.
T Consensus 77 l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 77 LTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHhcCceeEEEccCCCCC
Confidence 334556666666666554
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=1.3e-12 Score=108.66 Aligned_cols=158 Identities=30% Similarity=0.473 Sum_probs=80.9
Q ss_pred CCCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCC
Q 039018 11 SLRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSW 77 (181)
Q Consensus 11 ~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 77 (181)
+|++++++.|.+. .+|++++. ....+|..+..+.+|+. .+..|.++ .+|.....+++|++|++..
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehh
Confidence 4555555555555 44444433 11244455555666666 66666666 5566566666666666666
Q ss_pred CcccccchhHhhhccCCCCCC-CCccEEEcccccceeecCch-hhccccccc-ccccc-----------cCCcccEEEcc
Q 039018 78 ANKSQEILEIFHSFSRDNWTL-RSLQILDIACNNLSGAIPAC-ISNSSARKE-VGYTS-----------ILNLLRITDRS 143 (181)
Q Consensus 78 n~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~p~~-~~~~~~l~~-~~~~n-----------~l~~L~~l~l~ 143 (181)
|.+. ..|+.+- ... ..+..++.+.|++. .+|.. =..+..|+. ++.+| +..+|++|+++
T Consensus 320 N~L~-~lp~~~l------~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 320 NNLP-SLPDNFL------AVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred cccc-ccchHHH------hhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence 6654 3333221 001 11222222222222 11100 001111222 11222 45557888888
Q ss_pred CCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018 144 KNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 144 ~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
+|++. .+|...+.+++.|+.|+||+|.++ .+|..+
T Consensus 392 yNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv 426 (1081)
T KOG0618|consen 392 YNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTV 426 (1081)
T ss_pred ccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence 88877 667666677888888888888877 676543
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=1.1e-11 Score=94.87 Aligned_cols=155 Identities=23% Similarity=0.214 Sum_probs=78.9
Q ss_pred CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCC---CcEEEcCCCcccc
Q 039018 7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLRE---PRSISLSWANKSQ 82 (181)
Q Consensus 7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~---L~~L~l~~n~~~~ 82 (181)
...+.++.++++++.+.+ .+..+ ..++..+..+.+|+. ++++|.+....+..+..+.+ |+.|++++|.+..
T Consensus 48 ~~~~~l~~l~l~~~~~~~-~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 48 RPQPSLKELCLSLNETGR-IPRGL----QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred hhCCCceEEeccccccCC-cchHH----HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 344456666666665542 11111 123344555667777 77777776444444444443 7777777776653
Q ss_pred c----chhHhhhccCCCCCC-CCccEEEccccccee----ecCchhhccccccc-ccccc---------------cCCcc
Q 039018 83 E----ILEIFHSFSRDNWTL-RSLQILDIACNNLSG----AIPACISNSSARKE-VGYTS---------------ILNLL 137 (181)
Q Consensus 83 ~----~~~~~~~~~~~~~~~-~~L~~L~l~~n~i~~----~~p~~~~~~~~l~~-~~~~n---------------~l~~L 137 (181)
. ....+ ..+ ++|+.+++++|.+++ .++..+..+++|++ .+.+| ..++|
T Consensus 123 ~~~~~l~~~l-------~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L 195 (319)
T cd00116 123 RGLRLLAKGL-------KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL 195 (319)
T ss_pred HHHHHHHHHH-------HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCC
Confidence 1 12223 344 666777777666652 12233444445555 33333 12256
Q ss_pred cEEEccCCccccCCChhH---HHhcccCCEeEecCCccc
Q 039018 138 RITDRSKNNFSGVLPAEL---VTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 138 ~~l~l~~n~~~~~~p~~~---~~~l~~L~~L~L~~n~l~ 173 (181)
++|++++|.+.+.....+ +..+++|+.|++++|.++
T Consensus 196 ~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 666666666543221111 134455666666666655
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=8.2e-11 Score=92.84 Aligned_cols=151 Identities=30% Similarity=0.384 Sum_probs=79.7
Q ss_pred CCCCCCCCc-CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc
Q 039018 2 IPNGPENLS-SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN 79 (181)
Q Consensus 2 lp~~~~~l~-~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 79 (181)
||+....++ +|+.|++++|++. .+|..++.++.|+. ++++|++. .+|...+..++|+.|++++|.
T Consensus 131 i~~~~~~~~~nL~~L~l~~N~i~------------~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~ 197 (394)
T COG4886 131 IPPLIGLLKSNLKELDLSDNKIE------------SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197 (394)
T ss_pred Cccccccchhhcccccccccchh------------hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCc
Confidence 344444442 5555555555555 22223455555555 55555555 444433455555555555555
Q ss_pred ccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc----------cCCcccEEEccCCccc
Q 039018 80 KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------ILNLLRITDRSKNNFS 148 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------~l~~L~~l~l~~n~~~ 148 (181)
+. .+|... .....|+.+.+++|.+. ..+..+.....+.. .+..| .++.++++++++|.++
T Consensus 198 i~-~l~~~~-------~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 198 IS-DLPPEI-------ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred cc-cCchhh-------hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence 54 333332 23334555555555322 33333333333333 11111 4555888888888888
Q ss_pred cCCChhHHHhcccCCEeEecCCcccccCC
Q 039018 149 GVLPAELVTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 177 (181)
.++. + +.+.+++.|++++|.++..+|
T Consensus 269 -~i~~-~-~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 269 -SISS-L-GSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred -cccc-c-cccCccCEEeccCccccccch
Confidence 5554 5 788888888888888875444
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=7.4e-12 Score=99.61 Aligned_cols=141 Identities=28% Similarity=0.381 Sum_probs=85.8
Q ss_pred CCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCC
Q 039018 12 LRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWA 78 (181)
Q Consensus 12 L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 78 (181)
-...|++.|++. .+|..++. -...+|..++.+..|.. +++.|+++ .+|..++.++ |+.|-+++|
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 345778888877 45544332 01134444555555555 55555555 4555554443 445555554
Q ss_pred cccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHh
Q 039018 79 NKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTD 158 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~ 158 (181)
++. .+|+.+ +...+|..+|.+.|.+. .+|..++. +.+|+.+++..|++. .+|++. ..
T Consensus 154 kl~-~lp~~i-------g~~~tl~~ld~s~nei~-slpsql~~------------l~slr~l~vrRn~l~-~lp~El-~~ 210 (722)
T KOG0532|consen 154 KLT-SLPEEI-------GLLPTLAHLDVSKNEIQ-SLPSQLGY------------LTSLRDLNVRRNHLE-DLPEEL-CS 210 (722)
T ss_pred ccc-cCCccc-------ccchhHHHhhhhhhhhh-hchHHhhh------------HHHHHHHHHhhhhhh-hCCHHH-hC
Confidence 443 344444 44455555555555554 55555554 555888999999998 889888 64
Q ss_pred cccCCEeEecCCcccccCCCCC
Q 039018 159 LVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 159 l~~L~~L~L~~n~l~~~~p~~i 180 (181)
+ .|..||+++|+++ .||-.|
T Consensus 211 L-pLi~lDfScNkis-~iPv~f 230 (722)
T KOG0532|consen 211 L-PLIRLDFSCNKIS-YLPVDF 230 (722)
T ss_pred C-ceeeeecccCcee-ecchhh
Confidence 4 5899999999999 888665
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=6e-10 Score=77.99 Aligned_cols=109 Identities=27% Similarity=0.280 Sum_probs=41.5
Q ss_pred ccccccchh-ccccccccCCCCcccC-CCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018 41 LGNLTSLKH-SISYNVLEGKLPTSFG-RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC 118 (181)
Q Consensus 41 l~~l~~L~~-~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~ 118 (181)
+.+...+++ ++++|.++. + +.++ .+.+|+.|++++|.+... +.+ ..+.+|+.|++++|+++ .+.+.
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l-------~~L~~L~~L~L~~N~I~-~i~~~ 82 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGL-------PGLPRLKTLDLSNNRIS-SISEG 82 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT-----------TT--EEE--SS----S-CHH
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCc-------cChhhhhhcccCCCCCC-ccccc
Confidence 345567788 999999983 4 3465 588999999999998743 346 78899999999999998 55544
Q ss_pred hh-cccccccccccccCCcccEEEccCCccccC-CChhHHHhcccCCEeEecCCcccc
Q 039018 119 IS-NSSARKEVGYTSILNLLRITDRSKNNFSGV-LPAELVTDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 119 ~~-~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~-~p~~~~~~l~~L~~L~L~~n~l~~ 174 (181)
+. . +++|+.|++++|+|... --..+ +.+++|+.|+|.+|+++.
T Consensus 83 l~~~------------lp~L~~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 83 LDKN------------LPNLQELYLSNNKISDLNELEPL-SSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HHHH-------------TT--EEE-TTS---SCCCCGGG-GG-TT--EEE-TT-GGGG
T ss_pred hHHh------------CCcCCEEECcCCcCCChHHhHHH-HcCCCcceeeccCCcccc
Confidence 43 4 44599999999999742 12345 789999999999999983
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.99 E-value=2.1e-09 Score=90.57 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=74.2
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
||+.+. ++|+.|++++|+++ .+|. .+++|+. ++++|.++ .+|.. .++|+.|+++.|.+
T Consensus 216 LP~~l~--~~L~~L~L~~N~Lt-~LP~--------------lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 216 LPDCLP--AHITTLVIPDNNLT-SLPA--------------LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred CCcchh--cCCCEEEccCCcCC-CCCC--------------CCCCCcEEEecCCccC-cccCc---ccccceeeccCCch
Confidence 555553 36777777777776 3442 1345666 67777777 44532 34566666666655
Q ss_pred cccchhH---hhhcc------CC-CCCCCCccEEEcccccceeecCchhhccccccccccccc-------CCcccEEEcc
Q 039018 81 SQEILEI---FHSFS------RD-NWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSI-------LNLLRITDRS 143 (181)
Q Consensus 81 ~~~~~~~---~~~~~------~~-~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~-------l~~L~~l~l~ 143 (181)
.. +|.. +..+- .. ....++|+.|++++|+++ .+|.....+..| .+.+|. ..+|+.|+++
T Consensus 275 ~~-Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L--~Ls~N~L~~LP~lp~~Lq~LdLS 350 (788)
T PRK15387 275 TH-LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPALPSELCKL--WAYNNQLTSLPTLPSGLQELSVS 350 (788)
T ss_pred hh-hhhchhhcCEEECcCCccccccccccccceeECCCCccc-cCCCCccccccc--ccccCccccccccccccceEecC
Confidence 42 2221 11000 00 012356888888888887 455433322222 233331 1357888888
Q ss_pred CCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 144 KNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 144 ~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
+|+++ .+|.. ..+|+.|++++|.++
T Consensus 351 ~N~Ls-~LP~l----p~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 351 DNQLA-SLPTL----PSELYKLWAYNNRLT 375 (788)
T ss_pred CCccC-CCCCC----Ccccceehhhccccc
Confidence 88887 55632 123344444444444
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=4.6e-10 Score=88.61 Aligned_cols=148 Identities=28% Similarity=0.397 Sum_probs=114.5
Q ss_pred CCCCcCCCeeeccCcccccccCccccccccccCCcccccc-cchh-ccccccccCCCCcccCCCCCCcEEEcCCCccccc
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLT-SLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQE 83 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~-~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 83 (181)
+..++.++.+++.+|.+. .++....... +|+. ++++|.+. .+|..++.+++|+.|+++.|.+. .
T Consensus 112 ~~~~~~l~~L~l~~n~i~------------~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~ 177 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT------------DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-D 177 (394)
T ss_pred hhcccceeEEecCCcccc------------cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-h
Confidence 344567888899999988 3444455564 8888 99999999 67777899999999999999987 4
Q ss_pred chhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc----------cCCcccEEEccCCccccCCC
Q 039018 84 ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------ILNLLRITDRSKNNFSGVLP 152 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------~l~~L~~l~l~~n~~~~~~p 152 (181)
+|... +....|..+++++|+++ .+|........|.+ ...+| .+..+..+.+.+|++. ..+
T Consensus 178 l~~~~-------~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 178 LPKLL-------SNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhhhh-------hhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-ecc
Confidence 55554 57899999999999998 88887666666766 33333 5566777778888887 446
Q ss_pred hhHHHhcccCCEeEecCCcccccCCC
Q 039018 153 AELVTDLVALRSLNLFHNHFKEKFPG 178 (181)
Q Consensus 153 ~~~~~~l~~L~~L~L~~n~l~~~~p~ 178 (181)
..+ +.+++++.|++++|.++ .++.
T Consensus 249 ~~~-~~l~~l~~L~~s~n~i~-~i~~ 272 (394)
T COG4886 249 ESI-GNLSNLETLDLSNNQIS-SISS 272 (394)
T ss_pred chh-ccccccceecccccccc-cccc
Confidence 666 88999999999999998 5553
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.1e-09 Score=63.57 Aligned_cols=60 Identities=33% Similarity=0.499 Sum_probs=34.5
Q ss_pred CccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcc
Q 039018 100 SLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHF 172 (181)
Q Consensus 100 ~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l 172 (181)
+|+.+++++|+++..-++.|..++ +|+++++++|.++ .++...|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~------------~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLP------------NLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGT------------TESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCC------------CCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666633334555533 3666666666666 33333336677777777776654
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=4.2e-09 Score=61.04 Aligned_cols=61 Identities=33% Similarity=0.369 Sum_probs=42.1
Q ss_pred CCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCcc
Q 039018 68 REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNF 147 (181)
Q Consensus 68 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~ 147 (181)
++|++|++++|.+....+..| ..+++|+.+++++|.++..-|+.|..++ +|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f-------~~l~~L~~L~l~~N~l~~i~~~~f~~l~------------~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSF-------SNLPNLETLDLSNNNLTSIPPDAFSNLP------------NLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTT-------TTGTTESEEEETSSSESEEETTTTTTST------------TESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHH-------cCCCCCCEeEccCCccCccCHHHHcCCC------------CCCEEeCcCCcC
Confidence 456777777777775555666 7777777778777777755556666644 377777777764
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=5.9e-09 Score=77.90 Aligned_cols=108 Identities=21% Similarity=0.245 Sum_probs=83.6
Q ss_pred cccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018 40 GLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC 118 (181)
Q Consensus 40 ~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~ 118 (181)
.+...+.|.+ ++++|.+. .+.+++.-.++++.|++++|.+... +.+ ..+.+|+.||+++|.++ ..-++
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nL-------a~L~~L~~LDLS~N~Ls-~~~Gw 347 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNL-------AELPQLQLLDLSGNLLA-ECVGW 347 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhh-------hhcccceEeecccchhH-hhhhh
Confidence 4445677778 99999998 7888888899999999999988633 225 67889999999999887 54444
Q ss_pred hhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 119 ~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
--. +.+.++|.++.|.+. .+ ..+ .++=+|.+||+++|++.
T Consensus 348 h~K------------LGNIKtL~La~N~iE-~L-SGL-~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 348 HLK------------LGNIKTLKLAQNKIE-TL-SGL-RKLYSLVNLDLSSNQIE 387 (490)
T ss_pred Hhh------------hcCEeeeehhhhhHh-hh-hhh-Hhhhhheeccccccchh
Confidence 333 444889999999987 33 245 77888999999999985
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.70 E-value=2.4e-09 Score=82.31 Aligned_cols=107 Identities=23% Similarity=0.292 Sum_probs=80.4
Q ss_pred ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEccc-ccceeecC-chhhccccccc
Q 039018 50 SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIAC-NNLSGAIP-ACISNSSARKE 127 (181)
Q Consensus 50 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~p-~~~~~~~~l~~ 127 (181)
++..|.+....+..|+.+.+|+.||+++|.|+...|++| ..+.++..|-+.+ |+|+ .+| +.|+.+..
T Consensus 73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF-------~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~s--- 141 (498)
T KOG4237|consen 73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF-------KGLASLLSLVLYGNNKIT-DLPKGAFGGLSS--- 141 (498)
T ss_pred EeccCCcccCChhhccchhhhceecccccchhhcChHhh-------hhhHhhhHHHhhcCCchh-hhhhhHhhhHHH---
Confidence 588999996667789999999999999999999999999 8888877776555 8998 555 56777554
Q ss_pred ccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCC
Q 039018 128 VGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPG 178 (181)
Q Consensus 128 ~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~ 178 (181)
++.|.+.-|++. .+++..|..+++|+.|.+-+|.+. .+++
T Consensus 142 ---------lqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q-~i~~ 181 (498)
T KOG4237|consen 142 ---------LQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQ-SICK 181 (498)
T ss_pred ---------HHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhh-hhcc
Confidence 666666667766 555555577777777777777665 4443
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.57 E-value=6.2e-09 Score=78.72 Aligned_cols=161 Identities=19% Similarity=0.155 Sum_probs=102.1
Q ss_pred CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCC-------------cccCCCCCC
Q 039018 5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLP-------------TSFGRLREP 70 (181)
Q Consensus 5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~-------------~~~~~l~~L 70 (181)
++.++++|+++|||+|-+....++.+. .-+.++..|++ ++.+|.+...-. ...+.-++|
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~-------~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~L 159 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLE-------ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKL 159 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHH-------HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcce
Confidence 456677999999999999866555442 33556778888 888888763211 223445678
Q ss_pred cEEEcCCCcccccchh----Hhhh---------------------ccCCCCCCCCccEEEccccccee----ecCchhhc
Q 039018 71 RSISLSWANKSQEILE----IFHS---------------------FSRDNWTLRSLQILDIACNNLSG----AIPACISN 121 (181)
Q Consensus 71 ~~L~l~~n~~~~~~~~----~~~~---------------------~~~~~~~~~~L~~L~l~~n~i~~----~~p~~~~~ 121 (181)
+++..++|++...... .|+. +...+..+++|+.||+..|.++. .+...+..
T Consensus 160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s 239 (382)
T KOG1909|consen 160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS 239 (382)
T ss_pred EEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc
Confidence 8888888876422211 1110 11233567888888888887762 24445666
Q ss_pred cccccccccc-c----------------cCCcccEEEccCCccccC----CChhHHHhcccCCEeEecCCccc
Q 039018 122 SSARKEVGYT-S----------------ILNLLRITDRSKNNFSGV----LPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 122 ~~~l~~~~~~-n----------------~l~~L~~l~l~~n~~~~~----~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
+++|+++.++ + ..++|+.+.+.+|.|+.. +...+ ...+.|..|+|++|.+.
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~-~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM-AEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH-hcchhhHHhcCCccccc
Confidence 6776663222 1 666788888888888742 22234 45677888888888873
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.51 E-value=1.1e-07 Score=81.62 Aligned_cols=130 Identities=22% Similarity=0.233 Sum_probs=92.3
Q ss_pred CCcCCCeeeccCcccccccCccccccccccCCcccccccchh-cccccc--ccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018 8 NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNV--LEGKLPTSFGRLREPRSISLSWANKSQEI 84 (181)
Q Consensus 8 ~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 84 (181)
++...+.+.+.+|.+. .++ ... .++.|++ .+..|. +.....+.|..++.|++||+++|.-.+.+
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~-----------~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIA-----------GSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred chhheeEEEEeccchh-hcc-----------CCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence 4456677777777776 222 222 2335666 566664 44233444778999999999998877789
Q ss_pred hhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCE
Q 039018 85 LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRS 164 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~ 164 (181)
|+.+ +.+.+|++|+++.+.++ .+|..+++++. |.+|++..+.....+|... ..+.+|++
T Consensus 588 P~~I-------~~Li~LryL~L~~t~I~-~LP~~l~~Lk~------------L~~Lnl~~~~~l~~~~~i~-~~L~~Lr~ 646 (889)
T KOG4658|consen 588 PSSI-------GELVHLRYLDLSDTGIS-HLPSGLGNLKK------------LIYLNLEVTGRLESIPGIL-LELQSLRV 646 (889)
T ss_pred ChHH-------hhhhhhhcccccCCCcc-ccchHHHHHHh------------hheeccccccccccccchh-hhcccccE
Confidence 9999 99999999999999998 99999998655 7778877766554444444 66788888
Q ss_pred eEecCCc
Q 039018 165 LNLFHNH 171 (181)
Q Consensus 165 L~L~~n~ 171 (181)
|.+....
T Consensus 647 L~l~~s~ 653 (889)
T KOG4658|consen 647 LRLPRSA 653 (889)
T ss_pred EEeeccc
Confidence 8776543
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.49 E-value=1.1e-08 Score=77.35 Aligned_cols=25 Identities=40% Similarity=0.474 Sum_probs=18.0
Q ss_pred CCCCcCCCeeeccCcccccccCccc
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPEWI 30 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~~~ 30 (181)
+..+..++.++|++|.+.....+++
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i 50 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAI 50 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHH
Confidence 3456788999999999875544433
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.45 E-value=4.3e-09 Score=86.47 Aligned_cols=126 Identities=25% Similarity=0.257 Sum_probs=73.1
Q ss_pred CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhH-h
Q 039018 11 SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEI-F 88 (181)
Q Consensus 11 ~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~ 88 (181)
.|.+.++++|.+. .+..++.-++.++. +++.|++. ... .+..+++|++||+++|.+. .+|.. .
T Consensus 165 ~L~~a~fsyN~L~------------~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~ 229 (1096)
T KOG1859|consen 165 KLATASFSYNRLV------------LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSM 229 (1096)
T ss_pred hHhhhhcchhhHH------------hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccch
Confidence 3445555666555 33344455566666 67777766 332 5666777777777777654 23221 1
Q ss_pred hhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEec
Q 039018 89 HSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLF 168 (181)
Q Consensus 89 ~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~ 168 (181)
..+. |+.|.+.+|.++ .+- .+.+ +.+|+.||+++|-+.+..-=.....+..|+.|.|.
T Consensus 230 -------~gc~-L~~L~lrnN~l~-tL~-gie~------------LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 230 -------VGCK-LQLLNLRNNALT-TLR-GIEN------------LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE 287 (1096)
T ss_pred -------hhhh-heeeeecccHHH-hhh-hHHh------------hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence 1222 666777777665 221 2333 44478888888887753222223667778888888
Q ss_pred CCccc
Q 039018 169 HNHFK 173 (181)
Q Consensus 169 ~n~l~ 173 (181)
+|.+.
T Consensus 288 GNPl~ 292 (1096)
T KOG1859|consen 288 GNPLC 292 (1096)
T ss_pred CCccc
Confidence 88774
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.44 E-value=1.3e-07 Score=50.85 Aligned_cols=39 Identities=36% Similarity=0.462 Sum_probs=28.4
Q ss_pred cccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018 136 LLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 136 ~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 177 (181)
+|++|++++|+|+ .+|..+ +.+++|+.|++++|+++ +++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l-~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPEL-SNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHG-TTCTTSSEEEETSSCCS-BEG
T ss_pred cceEEEccCCCCc-ccCchH-hCCCCCCEEEecCCCCC-CCc
Confidence 4778888888887 677666 78888888888888887 554
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=2.3e-08 Score=82.37 Aligned_cols=144 Identities=25% Similarity=0.299 Sum_probs=101.9
Q ss_pred CCCCCCCcCCCeeeccCccccc---------ccCccccc------------cccccCCcccccccchh-ccccccccCCC
Q 039018 3 PNGPENLSSLRYLDLSDNQFNS---------TIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKL 60 (181)
Q Consensus 3 p~~~~~l~~L~~L~ls~n~i~~---------~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~ 60 (181)
|-.|+.++.|++|.+.++.+.. ++..-||. -.+.+..++ ....|.+ +.++|.+. ..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~-~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV-LM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-hH
Confidence 5567888999999999998752 11111111 001111111 1345666 78888887 67
Q ss_pred CcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch-hhcccccccccccccCCcccE
Q 039018 61 PTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC-ISNSSARKEVGYTSILNLLRI 139 (181)
Q Consensus 61 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~-~~~~~~l~~~~~~n~l~~L~~ 139 (181)
+.++.-++.++.|++++|++.... .+ ..+.+|..||+++|.+. .+|.. ... + .|+.
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~--~L-------r~l~~LkhLDlsyN~L~-~vp~l~~~g------------c-~L~~ 236 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD--NL-------RRLPKLKHLDLSYNCLR-HVPQLSMVG------------C-KLQL 236 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH--HH-------Hhcccccccccccchhc-cccccchhh------------h-hhee
Confidence 788888899999999999987443 66 68899999999999987 55542 222 2 2899
Q ss_pred EEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018 140 TDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 140 l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~ 174 (181)
|++.+|.++ .+- .+ .++.+|+.||+++|.+.+
T Consensus 237 L~lrnN~l~-tL~-gi-e~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 237 LNLRNNALT-TLR-GI-ENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred eeecccHHH-hhh-hH-HhhhhhhccchhHhhhhc
Confidence 999999998 443 56 899999999999999874
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.36 E-value=4.6e-08 Score=65.16 Aligned_cols=104 Identities=21% Similarity=0.208 Sum_probs=70.4
Q ss_pred ccccccccCCCC---cccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccc
Q 039018 50 SISYNVLEGKLP---TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126 (181)
Q Consensus 50 ~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~ 126 (181)
+++.|++. .++ ..+....+|+..++++|.+. .+|..|. .+.+.++.+++.+|.++ .+|.++..|+.
T Consensus 33 dLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft------~kf~t~t~lNl~~neis-dvPeE~Aam~a-- 101 (177)
T KOG4579|consen 33 DLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFT------IKFPTATTLNLANNEIS-DVPEELAAMPA-- 101 (177)
T ss_pred ccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHh------hccchhhhhhcchhhhh-hchHHHhhhHH--
Confidence 45555544 222 33445566777788888776 4555552 45567888888888887 78887877555
Q ss_pred cccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 127 ~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 177 (181)
|+.+++++|.+. ..|+.+ ..+.++..|+...|.+. +||
T Consensus 102 ----------Lr~lNl~~N~l~-~~p~vi-~~L~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 102 ----------LRSLNLRFNPLN-AEPRVI-APLIKLDMLDSPENARA-EID 139 (177)
T ss_pred ----------hhhcccccCccc-cchHHH-HHHHhHHHhcCCCCccc-cCc
Confidence 777888888887 667777 55777778887777765 444
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.35 E-value=9.4e-08 Score=63.69 Aligned_cols=90 Identities=23% Similarity=0.257 Sum_probs=71.0
Q ss_pred CCcEEEcCCCcccc--cchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCc
Q 039018 69 EPRSISLSWANKSQ--EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNN 146 (181)
Q Consensus 69 ~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~ 146 (181)
.+..++++.+.+-+ ..+..+ .+..+|+..++++|.+. .+|..|... .+.++++++++|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l-------~~~~el~~i~ls~N~fk-~fp~kft~k-----------f~t~t~lNl~~ne 88 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYML-------SKGYELTKISLSDNGFK-KFPKKFTIK-----------FPTATTLNLANNE 88 (177)
T ss_pred HhhhcccccchhhHHHHHHHHH-------hCCceEEEEecccchhh-hCCHHHhhc-----------cchhhhhhcchhh
Confidence 35567777776542 223334 66788999999999998 888877652 3458999999999
Q ss_pred cccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018 147 FSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 147 ~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
++ .+|.++ +.++.|+.++++.|.+. ..|+.|
T Consensus 89 is-dvPeE~-Aam~aLr~lNl~~N~l~-~~p~vi 119 (177)
T KOG4579|consen 89 IS-DVPEEL-AAMPALRSLNLRFNPLN-AEPRVI 119 (177)
T ss_pred hh-hchHHH-hhhHHhhhcccccCccc-cchHHH
Confidence 99 899997 99999999999999998 777654
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.3e-07 Score=72.34 Aligned_cols=67 Identities=25% Similarity=0.247 Sum_probs=37.2
Q ss_pred CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCccc-CCCCCCcEEEcCCCcccc
Q 039018 7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSF-GRLREPRSISLSWANKSQ 82 (181)
Q Consensus 7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~ 82 (181)
..|++++.||++.|-+..-. .+..-...+++|+. .++.|.+.-...... ..+.+++.|.++.|.++.
T Consensus 143 k~~~~v~~LdLS~NL~~nw~---------~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~ 211 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWF---------PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW 211 (505)
T ss_pred hhCCcceeecchhhhHHhHH---------HHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH
Confidence 34667777777777655111 11222345667777 777777652221111 235677777777777653
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.27 E-value=2.5e-07 Score=73.71 Aligned_cols=142 Identities=28% Similarity=0.286 Sum_probs=81.9
Q ss_pred CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI 84 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 84 (181)
+..+++|+.+++.+|.|. .+...+..+.+|++ ++++|.++.. ..+..++.|+.|++++|.+...
T Consensus 91 l~~~~~l~~l~l~~n~i~------------~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~- 155 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE------------KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI- 155 (414)
T ss_pred cccccceeeeeccccchh------------hcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc-
Confidence 556677777888888877 22222456777777 7888777732 2355666677777777776522
Q ss_pred hhHhhhccCCCCCCCCccEEEcccccceeecCch-hhccccccc-ccccc------------------------------
Q 039018 85 LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC-ISNSSARKE-VGYTS------------------------------ 132 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~-~~~~~~l~~-~~~~n------------------------------ 132 (181)
..+ ..+..|+.+++++|++. .+... ...+..+.. ++.+|
T Consensus 156 -~~~-------~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l 226 (414)
T KOG0531|consen 156 -SGL-------ESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGL 226 (414)
T ss_pred -cCC-------ccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCc
Confidence 222 34667777777777776 22221 344444444 33333
Q ss_pred -cCCc--ccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 133 -ILNL--LRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 133 -~l~~--L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
.... |+.+++++|++. .++..+ ..+.++..+++..|.+.
T Consensus 227 ~~~~~~~L~~l~l~~n~i~-~~~~~~-~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 227 NELVMLHLRELYLSGNRIS-RSPEGL-ENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccchhHHHHHHhcccCccc-cccccc-cccccccccchhhcccc
Confidence 1111 455666666665 333333 55666666666666554
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.13 E-value=4.6e-07 Score=67.02 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=99.4
Q ss_pred CCcCCCeeeccCcccccccCccccc----------------ccc-----------ccCCcccccccchh-ccccccccCC
Q 039018 8 NLSSLRYLDLSDNQFNSTIPEWISR----------------INC-----------TISSGLGNLTSLKH-SISYNVLEGK 59 (181)
Q Consensus 8 ~l~~L~~L~ls~n~i~~~~p~~~~~----------------~~~-----------~l~~~l~~l~~L~~-~l~~n~~~~~ 59 (181)
-+..+..+++|+|.|.....++++. +++ .+.+.+-+|+.++. ++++|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3567888999999987665555554 111 13334556788888 8888888766
Q ss_pred CCccc----CCCCCCcEEEcCCCccccc----chhHhhhcc--CCCCCCCCccEEEcccccceeecCc-----hhhcccc
Q 039018 60 LPTSF----GRLREPRSISLSWANKSQE----ILEIFHSFS--RDNWTLRSLQILDIACNNLSGAIPA-----CISNSSA 124 (181)
Q Consensus 60 ~~~~~----~~l~~L~~L~l~~n~~~~~----~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~p~-----~~~~~~~ 124 (181)
.|..+ +.-+.|.+|.+++|.+... +..++-++. .-+..-+.|+...+..|++. ..|. .+.....
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcC
Confidence 66443 4557788888887765322 222221211 11134467777777777765 3332 1333334
Q ss_pred ccc-ccccc----------------cCCcccEEEccCCccccC----CChhHHHhcccCCEeEecCCccccc
Q 039018 125 RKE-VGYTS----------------ILNLLRITDRSKNNFSGV----LPAELVTDLVALRSLNLFHNHFKEK 175 (181)
Q Consensus 125 l~~-~~~~n----------------~l~~L~~l~l~~n~~~~~----~p~~~~~~l~~L~~L~L~~n~l~~~ 175 (181)
|++ -+.+| .+.+|++||+..|-++-. +...+ ..|+.|+.|.+.+|.++..
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al-~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL-CEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh-cccchhhhccccchhhccc
Confidence 444 33444 566788888888888732 22233 5677788888888877643
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=7e-07 Score=71.15 Aligned_cols=107 Identities=25% Similarity=0.343 Sum_probs=58.6
Q ss_pred ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018 41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119 (181)
Q Consensus 41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~ 119 (181)
+..++++.. ++.+|.+.. +...+..+++|++|++++|.+...- .+ ..+..|+.|++++|.++ .+.. +
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l-------~~l~~L~~L~l~~N~i~-~~~~-~ 158 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GL-------STLTLLKELNLSGNLIS-DISG-L 158 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--ch-------hhccchhhheeccCcch-hccC-C
Confidence 445555555 666666652 2222455666666666666655322 12 33444666666666664 2211 1
Q ss_pred hcccccccccccccCCcccEEEccCCccccCCChh-HHHhcccCCEeEecCCccc
Q 039018 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAE-LVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 120 ~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~-~~~~l~~L~~L~L~~n~l~ 173 (181)
.. +..|+.+++++|++. .+... . ..+.+++.+.+..|.+.
T Consensus 159 ~~------------l~~L~~l~l~~n~i~-~ie~~~~-~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 159 ES------------LKSLKLLDLSYNRIV-DIENDEL-SELISLEELDLGGNSIR 199 (414)
T ss_pred cc------------chhhhcccCCcchhh-hhhhhhh-hhccchHHHhccCCchh
Confidence 11 344777777777776 33431 2 56667777777777665
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=9.7e-06 Score=43.51 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=18.9
Q ss_pred CCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccce
Q 039018 69 EPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS 112 (181)
Q Consensus 69 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 112 (181)
+|++|++++|.+. .+|..+ .++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l-------~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPEL-------SNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHG-------TTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchH-------hCCCCCCEEEecCCCCC
Confidence 4556666666555 334445 55566666666665554
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1e-06 Score=68.85 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=23.7
Q ss_pred CCcccEEEccCCccccCCC--hhHHHhcccCCEeEecCCccc
Q 039018 134 LNLLRITDRSKNNFSGVLP--AELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 134 l~~L~~l~l~~n~~~~~~p--~~~~~~l~~L~~L~L~~n~l~ 173 (181)
.++|++|+++.|++. ..+ ..+ ..+++|+.|....|.++
T Consensus 300 f~kL~~L~i~~N~I~-~w~sl~~l-~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENNIR-DWRSLNHL-RTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCccc-cccccchh-hccchhhhhhccccccc
Confidence 566777777777775 322 234 45666667666666665
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.86 E-value=1.9e-05 Score=68.24 Aligned_cols=110 Identities=28% Similarity=0.324 Sum_probs=83.5
Q ss_pred ccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc--ccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhc
Q 039018 45 TSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN--KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISN 121 (181)
Q Consensus 45 ~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~ 121 (181)
...+. .+.+|.+. ..+.. ...++|++|-+..|. +....++.| ..++.|.+||+++|.-.+.+|..++.
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff-------~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFF-------RSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred hheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHH-------hhCcceEEEECCCCCccCcCChHHhh
Confidence 44455 55566665 44443 234579999888886 444445557 78999999999998665699999998
Q ss_pred ccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018 122 SSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 122 ~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 177 (181)
+- +|++|++++..+. .+|..+ +++..|.+|++..+.-...+|
T Consensus 594 Li------------~LryL~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 594 LV------------HLRYLDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred hh------------hhhcccccCCCcc-ccchHH-HHHHhhheecccccccccccc
Confidence 54 4999999999999 899999 999999999999876544443
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=8.2e-05 Score=62.84 Aligned_cols=121 Identities=24% Similarity=0.254 Sum_probs=78.1
Q ss_pred ccchh-cccccccc-CCCCcccC-CCCCCcEEEcCCCcccc-cchhHhhhccCCCCCCCCccEEEcccccceeecCchhh
Q 039018 45 TSLKH-SISYNVLE-GKLPTSFG-RLREPRSISLSWANKSQ-EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120 (181)
Q Consensus 45 ~~L~~-~l~~n~~~-~~~~~~~~-~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~ 120 (181)
.+|+. ++++.... ...+..++ .+|+|+.|.+.+-.+.. ...... ..+++|..||+|+..++ .+ ..++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc-------~sFpNL~sLDIS~TnI~-nl-~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLC-------ASFPNLRSLDISGTNIS-NL-SGIS 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHh-------hccCccceeecCCCCcc-Cc-HHHh
Confidence 34555 55443321 11223333 36888888887755532 233344 67788999999998887 33 5677
Q ss_pred cccccccccccc-------------cCCcccEEEccCCccccCCChhH------HHhcccCCEeEecCCccccc
Q 039018 121 NSSARKEVGYTS-------------ILNLLRITDRSKNNFSGVLPAEL------VTDLVALRSLNLFHNHFKEK 175 (181)
Q Consensus 121 ~~~~l~~~~~~n-------------~l~~L~~l~l~~n~~~~~~p~~~------~~~l~~L~~L~L~~n~l~~~ 175 (181)
.+++|+.+.+.| .+++|++||+|..... ..+..+ ...+|.|+.||.|+..+.+.
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 888888865555 7889999999987655 222211 13588999999998776543
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00013 Score=51.86 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=31.1
Q ss_pred ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccce
Q 039018 50 SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS 112 (181)
Q Consensus 50 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 112 (181)
++++|.+. .+ +.+..++.|.+|.+++|.+....|.-- ..+++|+.|.+.+|.+.
T Consensus 48 DLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~-------~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 48 DLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLD-------TFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccccchh-hc-ccCCCccccceEEecCCcceeeccchh-------hhccccceEEecCcchh
Confidence 56666555 22 235566666666666666665544443 34456666666666654
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.45 E-value=0.00014 Score=53.48 Aligned_cols=104 Identities=19% Similarity=0.188 Sum_probs=67.2
Q ss_pred ccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc--ccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018 43 NLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN--KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119 (181)
Q Consensus 43 ~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~ 119 (181)
....|+. .+.+..++ .+ ..+..+++|+.|.++.|. +.+.++... -++++|++++++.|++. .+.++
T Consensus 41 ~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-------e~~P~l~~l~ls~Nki~--~lstl 109 (260)
T KOG2739|consen 41 EFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLA-------EKAPNLKVLNLSGNKIK--DLSTL 109 (260)
T ss_pred cccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehh-------hhCCceeEEeecCCccc--ccccc
Confidence 3445555 55555555 22 346678899999999994 444443333 45699999999999986 24444
Q ss_pred hcccccccccccccCCcccEEEccCCccccCCC---hhHHHhcccCCEeEe
Q 039018 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLP---AELVTDLVALRSLNL 167 (181)
Q Consensus 120 ~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p---~~~~~~l~~L~~L~L 167 (181)
.-++. +.+|..|++.+|..+. +- ..+|.-+++|++|+=
T Consensus 110 ~pl~~---------l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 110 RPLKE---------LENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhh---------hcchhhhhcccCCccc-cccHHHHHHHHhhhhccccc
Confidence 44444 5557888888877763 22 235577888888764
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=9.1e-06 Score=61.04 Aligned_cols=143 Identities=16% Similarity=0.087 Sum_probs=82.6
Q ss_pred CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc-cccc-chhH
Q 039018 11 SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN-KSQE-ILEI 87 (181)
Q Consensus 11 ~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~ 87 (181)
.||.||||...|+..- +..-+..|.+|+. .+.++.+.+.+...+.+-.+|+.++++++. ++.. +.-.
T Consensus 186 Rlq~lDLS~s~it~st----------l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVST----------LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL 255 (419)
T ss_pred hhHHhhcchhheeHHH----------HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHH
Confidence 4788888888876211 1123566777777 788888887777777777888888887754 2211 1223
Q ss_pred hhhccCCCCCCCCccEEEcccccceeecCchhhc--cccccc-ccccc--------------cCCcccEEEccCCcc-cc
Q 039018 88 FHSFSRDNWTLRSLQILDIACNNLSGAIPACISN--SSARKE-VGYTS--------------ILNLLRITDRSKNNF-SG 149 (181)
Q Consensus 88 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~--~~~l~~-~~~~n--------------~l~~L~~l~l~~n~~-~~ 149 (181)
+ ..+..|+.|+++.+.+....-..+.. -.+|+. .+.|. .++++.+||++.|.. +.
T Consensus 256 ~-------~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 256 L-------SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred H-------HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 4 56777888888777654221110000 001111 11221 566778888877643 22
Q ss_pred CCChhHHHhcccCCEeEecCCc
Q 039018 150 VLPAELVTDLVALRSLNLFHNH 171 (181)
Q Consensus 150 ~~p~~~~~~l~~L~~L~L~~n~ 171 (181)
....++ -+++.|++|.++.|.
T Consensus 329 ~~~~~~-~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 329 DCFQEF-FKFNYLQHLSLSRCY 349 (419)
T ss_pred hHHHHH-Hhcchheeeehhhhc
Confidence 222233 567778888877766
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.35 E-value=0.00045 Score=54.67 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=63.5
Q ss_pred CCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchh
Q 039018 8 NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILE 86 (181)
Q Consensus 8 ~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 86 (181)
.++.++.|++++|.++ .+|+ +|. +|++ .+++|.-...+|+.+ ..+|+.|++++|.....+|.
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~--------LP~------sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV--------LPN------ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC--------CCC------CCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 4678889999999877 4442 222 2444 455533322455443 24677777776632223333
Q ss_pred HhhhccCCCCCCCCccEEEcccccce--eecCchhhccccccc-ccccc-----cCCcccEEEccCCccccCCChhHHHh
Q 039018 87 IFHSFSRDNWTLRSLQILDIACNNLS--GAIPACISNSSARKE-VGYTS-----ILNLLRITDRSKNNFSGVLPAELVTD 158 (181)
Q Consensus 87 ~~~~~~~~~~~~~~L~~L~l~~n~i~--~~~p~~~~~~~~l~~-~~~~n-----~l~~L~~l~l~~n~~~~~~p~~~~~~ 158 (181)
. |+.|++..+... +.+|..+..+.---. ..... -.++|++|++++|... .+|+.+
T Consensus 113 s-------------Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~L--- 175 (426)
T PRK15386 113 S-------------VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKL--- 175 (426)
T ss_pred c-------------cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCcccc---
Confidence 2 333444443321 144444332210000 00000 1245777888777655 455433
Q ss_pred cccCCEeEecCC
Q 039018 159 LVALRSLNLFHN 170 (181)
Q Consensus 159 l~~L~~L~L~~n 170 (181)
-.+|+.|.++.+
T Consensus 176 P~SLk~L~ls~n 187 (426)
T PRK15386 176 PESLQSITLHIE 187 (426)
T ss_pred cccCcEEEeccc
Confidence 246677777655
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.16 E-value=0.00038 Score=58.94 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=7.7
Q ss_pred cCCCCCCcEEEcCCCc
Q 039018 64 FGRLREPRSISLSWAN 79 (181)
Q Consensus 64 ~~~l~~L~~L~l~~n~ 79 (181)
+..+++|++||+|...
T Consensus 216 LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDK 231 (699)
T ss_pred HhcccCCCeeeccccc
Confidence 3445555555555433
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.00012 Score=55.10 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=30.6
Q ss_pred cCCcccEEEccCCccccC-CChhHHHhcccCCEeEecCCcccccC
Q 039018 133 ILNLLRITDRSKNNFSGV-LPAELVTDLVALRSLNLFHNHFKEKF 176 (181)
Q Consensus 133 ~l~~L~~l~l~~n~~~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~ 176 (181)
..+++..|+++.|+|... ..+.+ .+++.|+.|.+++|.+.+.+
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~L-n~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDAL-NGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHH-cCCchhheeeccCCcccccc
Confidence 556677788888887632 12345 67888999999999887654
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.14 E-value=0.00072 Score=48.22 Aligned_cols=105 Identities=18% Similarity=0.124 Sum_probs=63.4
Q ss_pred CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch-hHh
Q 039018 11 SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL-EIF 88 (181)
Q Consensus 11 ~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~ 88 (181)
....+||++|.+. .++ .+..++.|+. .+.+|.++..-|.--..++++..|.+.+|.+..... +-+
T Consensus 43 ~~d~iDLtdNdl~-~l~------------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL 109 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD------------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL 109 (233)
T ss_pred ccceecccccchh-hcc------------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh
Confidence 3455777777776 222 2556777777 888888885544433446778888888887752211 223
Q ss_pred hhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccC
Q 039018 89 HSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSK 144 (181)
Q Consensus 89 ~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~ 144 (181)
..+++|++|.+-+|+++ ..+..-..+ -..+++|++||++.
T Consensus 110 -------a~~p~L~~Ltll~Npv~-~k~~YR~yv--------l~klp~l~~LDF~k 149 (233)
T KOG1644|consen 110 -------ASCPKLEYLTLLGNPVE-HKKNYRLYV--------LYKLPSLRTLDFQK 149 (233)
T ss_pred -------ccCCccceeeecCCchh-cccCceeEE--------EEecCcceEeehhh
Confidence 56778888888888776 222210000 00256688888755
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.11 E-value=0.00032 Score=52.34 Aligned_cols=71 Identities=21% Similarity=0.197 Sum_probs=48.9
Q ss_pred CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCccc-------------CCCCC
Q 039018 4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSF-------------GRLRE 69 (181)
Q Consensus 4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~-------------~~l~~ 69 (181)
+++.+|++|+..++|+|.+....|+-+ .+-+.+-+.|.+ .+++|.+...--..+ ..-+.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L-------~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~ 158 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEEL-------GDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPK 158 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHH-------HHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCC
Confidence 356789999999999999997777733 344556666777 778877763211112 24467
Q ss_pred CcEEEcCCCccc
Q 039018 70 PRSISLSWANKS 81 (181)
Q Consensus 70 L~~L~l~~n~~~ 81 (181)
|++...+.|++.
T Consensus 159 Le~vicgrNRle 170 (388)
T COG5238 159 LEVVICGRNRLE 170 (388)
T ss_pred ceEEEeccchhc
Confidence 888888888764
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.08 E-value=0.0019 Score=51.26 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=63.3
Q ss_pred cccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccc-cceeecCchh
Q 039018 42 GNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACN-NLSGAIPACI 119 (181)
Q Consensus 42 ~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~p~~~ 119 (181)
..+.+++. ++++|.+. .+|. -..+|+.|.++++.-...+|+.+ ..+|+.|.+++| .+. .+|..+
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---------P~nLe~L~Ls~Cs~L~-sLP~sL 114 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---------PEGLEKLTVCHCPEIS-GLPESV 114 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---------hhhhhheEccCccccc-cccccc
Confidence 34667777 88988877 6662 23469999998765444555544 257899999988 555 677654
Q ss_pred hccccccccc---ccccCCcccEEEccCCccccCCChhHHHhc-ccCCEeEecCCccc
Q 039018 120 SNSSARKEVG---YTSILNLLRITDRSKNNFSGVLPAELVTDL-VALRSLNLFHNHFK 173 (181)
Q Consensus 120 ~~~~~l~~~~---~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l-~~L~~L~L~~n~l~ 173 (181)
..+. +.... ...-.++|+.|.+.+++.. ....+...+ ++|++|++++|...
T Consensus 115 e~L~-L~~n~~~~L~~LPssLk~L~I~~~n~~--~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 115 RSLE-IKGSATDSIKNVPNGLTSLSINSYNPE--NQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred ceEE-eCCCCCcccccCcchHhheeccccccc--cccccccccCCcccEEEecCCCcc
Confidence 3322 00000 0011233445554322111 000000112 46899999988765
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.96 E-value=0.0045 Score=40.74 Aligned_cols=123 Identities=22% Similarity=0.246 Sum_probs=54.3
Q ss_pred CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018 4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ 82 (181)
Q Consensus 4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 82 (181)
..+.++++|+.+.+.. .+. .+++ ..+..++.++. .+..+ +...-...+..+++++.+.+.. .+..
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~----------~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~ 71 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGE----------NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS 71 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-T----------TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred HHHhCCCCCCEEEECC-Cee-EeCh----------hhccccccccccccccc-ccccceeeeecccccccccccc-cccc
Confidence 4566777888888875 444 3443 34666767777 66654 4433445567777788888864 3332
Q ss_pred cchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccC
Q 039018 83 EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVAL 162 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L 162 (181)
.....| ..+..++.+.+..+ +...-...+..+ .++.+.+.. .+. .++...|..+++|
T Consensus 72 i~~~~F-------~~~~~l~~i~~~~~-~~~i~~~~f~~~-------------~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 72 IGDNAF-------SNCTNLKNIDIPSN-ITEIGSSSFSNC-------------NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp E-TTTT-------TT-TTECEEEETTT--BEEHTTTTTT--------------T--EEE-TT-B-S-S----GGG-----
T ss_pred cccccc-------cccccccccccCcc-ccEEchhhhcCC-------------CceEEEECC-Ccc-EECCccccccccC
Confidence 333445 55788888887665 442333445543 366676654 333 4454444666655
Q ss_pred C
Q 039018 163 R 163 (181)
Q Consensus 163 ~ 163 (181)
+
T Consensus 129 ~ 129 (129)
T PF13306_consen 129 K 129 (129)
T ss_dssp -
T ss_pred C
Confidence 3
No 61
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.86 E-value=0.00047 Score=31.04 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=11.1
Q ss_pred CCEeEecCCcccccCCCCC
Q 039018 162 LRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 162 L~~L~L~~n~l~~~~p~~i 180 (181)
|++|+|++|+++ .+|++|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 566666666666 566554
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.14 E-value=0.0028 Score=28.39 Aligned_cols=12 Identities=42% Similarity=0.476 Sum_probs=5.2
Q ss_pred ccEEEccCCccc
Q 039018 137 LRITDRSKNNFS 148 (181)
Q Consensus 137 L~~l~l~~n~~~ 148 (181)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 63
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.12 E-value=0.0033 Score=26.31 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=5.8
Q ss_pred cCCEeEecCCccc
Q 039018 161 ALRSLNLFHNHFK 173 (181)
Q Consensus 161 ~L~~L~L~~n~l~ 173 (181)
+|+.|++++|.++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555666666555
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.0029 Score=47.95 Aligned_cols=39 Identities=31% Similarity=0.453 Sum_probs=29.1
Q ss_pred CCCCcEEEcCCCcccc--cchhHhhhccCCCCCCCCccEEEcccccce
Q 039018 67 LREPRSISLSWANKSQ--EILEIFHSFSRDNWTLRSLQILDIACNNLS 112 (181)
Q Consensus 67 l~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 112 (181)
.+.++.+|+.+|.++. .+..-+ ..++.|+.|+++.|.+.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~il-------e~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAIL-------EQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHH-------hcCccceEeeccCCcCC
Confidence 5678888888888763 333445 67888999999988876
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.71 E-value=0.0096 Score=44.02 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=44.8
Q ss_pred ccccccchh-ccccc--cccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccce
Q 039018 41 LGNLTSLKH-SISYN--VLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS 112 (181)
Q Consensus 41 l~~l~~L~~-~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 112 (181)
+..+++|+. .++.| .+.+.++-....+++|++++++.|++.- ...+. ....+.+|..|++.+|..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~----pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR----PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc----hhhhhcchhhhhcccCCcc
Confidence 445778888 88888 6665666556667999999999998752 12210 1156677888888887665
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.00098 Score=50.43 Aligned_cols=86 Identities=20% Similarity=0.134 Sum_probs=47.9
Q ss_pred CCcEEEcCCCccccc-chhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCC-c
Q 039018 69 EPRSISLSWANKSQE-ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKN-N 146 (181)
Q Consensus 69 ~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n-~ 146 (181)
.++++|+++..++.. +...+ ..+.+|+.+.+.++++.+.+..+++.-.+ |+.++++++ .
T Consensus 186 Rlq~lDLS~s~it~stl~~iL-------s~C~kLk~lSlEg~~LdD~I~~~iAkN~~------------L~~lnlsm~sG 246 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGIL-------SQCSKLKNLSLEGLRLDDPIVNTIAKNSN------------LVRLNLSMCSG 246 (419)
T ss_pred hhHHhhcchhheeHHHHHHHH-------HHHHhhhhccccccccCcHHHHHHhcccc------------ceeeccccccc
Confidence 366667766655432 12223 45666777777777766555555555333 666666653 3
Q ss_pred cccCCChhHHHhcccCCEeEecCCccc
Q 039018 147 FSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 147 ~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
++..-.+.++..|..|+.|+|+++.+.
T Consensus 247 ~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 247 FTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred cchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 443333344466666666666666554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.0039 Score=46.87 Aligned_cols=95 Identities=17% Similarity=0.077 Sum_probs=61.6
Q ss_pred ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccccc
Q 039018 50 SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVG 129 (181)
Q Consensus 50 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~ 129 (181)
++-+|.+.+. .-...|+.|++|.|+-|+++.. ..+ ..|++|+.|+|..|.|. .+ +++..+++
T Consensus 25 Ncwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl-------~rCtrLkElYLRkN~I~-sl-dEL~YLkn----- 86 (388)
T KOG2123|consen 25 NCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APL-------QRCTRLKELYLRKNCIE-SL-DELEYLKN----- 86 (388)
T ss_pred cccCCCccHH--HHHHhcccceeEEeeccccccc--hhH-------HHHHHHHHHHHHhcccc-cH-HHHHHHhc-----
Confidence 4555555532 1234688888888888887633 223 56788888888888875 32 23444444
Q ss_pred ccccCCcccEEEccCCccccCCCh----hHHHhcccCCEeE
Q 039018 130 YTSILNLLRITDRSKNNFSGVLPA----ELVTDLVALRSLN 166 (181)
Q Consensus 130 ~~n~l~~L~~l~l~~n~~~~~~p~----~~~~~l~~L~~L~ 166 (181)
+++|+.|.|..|.-.+.-+. .++..+|+|+.||
T Consensus 87 ----lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 ----LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ----CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 67788888888877654332 2336788888876
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.06 E-value=0.023 Score=26.38 Aligned_cols=20 Identities=40% Similarity=0.399 Sum_probs=12.6
Q ss_pred CcccEEEccCCccccCCChhH
Q 039018 135 NLLRITDRSKNNFSGVLPAEL 155 (181)
Q Consensus 135 ~~L~~l~l~~n~~~~~~p~~~ 155 (181)
++|++|++++|++. .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 34666777777766 566554
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.06 E-value=0.023 Score=26.38 Aligned_cols=20 Identities=40% Similarity=0.399 Sum_probs=12.6
Q ss_pred CcccEEEccCCccccCCChhH
Q 039018 135 NLLRITDRSKNNFSGVLPAEL 155 (181)
Q Consensus 135 ~~L~~l~l~~n~~~~~~p~~~ 155 (181)
++|++|++++|++. .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 34666777777766 566554
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.003 Score=47.43 Aligned_cols=64 Identities=27% Similarity=0.222 Sum_probs=38.0
Q ss_pred CCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCC--cccCCCCCCcEEEcCCCcccccc
Q 039018 8 NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLP--TSFGRLREPRSISLSWANKSQEI 84 (181)
Q Consensus 8 ~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~ 84 (181)
+|+.|++|.||=|.|...- .+..|+.|++ ++..|.+. .+. ..+.++++|+.|.+..|+..+..
T Consensus 39 kMp~lEVLsLSvNkIssL~-------------pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA-------------PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEA 104 (388)
T ss_pred hcccceeEEeeccccccch-------------hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCccccc
Confidence 4555666666666665211 2556777777 77777766 322 22456677777777777665544
Q ss_pred h
Q 039018 85 L 85 (181)
Q Consensus 85 ~ 85 (181)
+
T Consensus 105 g 105 (388)
T KOG2123|consen 105 G 105 (388)
T ss_pred c
Confidence 3
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.88 E-value=0.016 Score=26.95 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=17.0
Q ss_pred cccCCEeEecCCcccccCCCC
Q 039018 159 LVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 159 l~~L~~L~L~~n~l~~~~p~~ 179 (181)
+++|+.|+|++|.++ .+|+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 467999999999999 77764
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.88 E-value=0.016 Score=26.95 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=17.0
Q ss_pred cccCCEeEecCCcccccCCCC
Q 039018 159 LVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 159 l~~L~~L~L~~n~l~~~~p~~ 179 (181)
+++|+.|+|++|.++ .+|+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 467999999999999 77764
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.81 E-value=0.17 Score=33.09 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=54.2
Q ss_pred cccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018 40 GLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC 118 (181)
Q Consensus 40 ~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~ 118 (181)
.+.++.+|+. .+.. .+...-...+..+++++.+.+..+ +.......| ..+..++.+.+.. .+...-...
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F-------~~~~~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF-------SNCKSLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTT-------TT-TT-EEEEETS-TT-EE-TTT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeee-------ecccccccccccc-ccccccccc
Confidence 4666777777 6654 344344566788888999998765 443334456 6777899998866 443122344
Q ss_pred hhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecC
Q 039018 119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFH 169 (181)
Q Consensus 119 ~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~ 169 (181)
+..+. .++.+++..+ +. .++...|..+ .|+.+.+..
T Consensus 77 F~~~~------------~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCT------------NLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-T------------TECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred ccccc------------cccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 55544 4788888665 44 3444444776 788887764
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.61 E-value=0.014 Score=26.54 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=13.3
Q ss_pred CcCCCeeeccCcccccccCc
Q 039018 9 LSSLRYLDLSDNQFNSTIPE 28 (181)
Q Consensus 9 l~~L~~L~ls~n~i~~~~p~ 28 (181)
+++|+.|++++|.|.+....
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHH
Confidence 47899999999999854443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.68 E-value=0.0023 Score=46.80 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=53.9
Q ss_pred cCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEcc
Q 039018 64 FGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRS 143 (181)
Q Consensus 64 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~ 143 (181)
+......+.||++.|+.. .+...| ..+..+..++++.|.+. ..|..+++... +..++..
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~-------s~~t~~~rl~~sknq~~-~~~~d~~q~~e------------~~~~~~~ 96 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNF-------SILTRLVRLDLSKNQIK-FLPKDAKQQRE------------TVNAASH 96 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccch-------HHHHHHHHHhccHhhHh-hChhhHHHHHH------------HHHHHhh
Confidence 444566777888777654 223344 55667777788888776 77777777554 4445555
Q ss_pred CCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 144 KNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 144 ~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
.|..+ ..|... +..+.++++++..|.+.
T Consensus 97 ~n~~~-~~p~s~-~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 97 KNNHS-QQPKSQ-KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccchh-hCCccc-cccCCcchhhhccCcch
Confidence 55554 556555 66666666666655543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.30 E-value=0.071 Score=38.26 Aligned_cols=33 Identities=30% Similarity=0.199 Sum_probs=15.5
Q ss_pred CcccEEEccCC-ccccCCChhHHHhcccCCEeEec
Q 039018 135 NLLRITDRSKN-NFSGVLPAELVTDLVALRSLNLF 168 (181)
Q Consensus 135 ~~L~~l~l~~n-~~~~~~p~~~~~~l~~L~~L~L~ 168 (181)
++|+.|++++| +|+..--..+ .++++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHH-HHhhhhHHHHhc
Confidence 34556666544 4443323333 455555555443
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.62 E-value=0.12 Score=24.08 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=10.9
Q ss_pred cCCEeEecCCcccccCCC
Q 039018 161 ALRSLNLFHNHFKEKFPG 178 (181)
Q Consensus 161 ~L~~L~L~~n~l~~~~p~ 178 (181)
+|+.|++++|+++ ++|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666666 6664
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.34 E-value=0.013 Score=43.07 Aligned_cols=45 Identities=9% Similarity=-0.021 Sum_probs=32.0
Q ss_pred ccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018 36 TISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS 81 (181)
Q Consensus 36 ~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 81 (181)
.+|+.++....++. ++..|+.+ ..|.+++.++++++++...+.+.
T Consensus 79 ~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 79 FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 45566677777766 66666666 77777888888888887777654
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.98 E-value=0.51 Score=22.01 Aligned_cols=15 Identities=47% Similarity=0.689 Sum_probs=12.9
Q ss_pred CcCCCeeeccCcccc
Q 039018 9 LSSLRYLDLSDNQFN 23 (181)
Q Consensus 9 l~~L~~L~ls~n~i~ 23 (181)
+++|+.|+++.|.|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 467899999999997
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.29 E-value=0.015 Score=47.34 Aligned_cols=37 Identities=27% Similarity=0.273 Sum_probs=21.2
Q ss_pred cccEEEccCCccccCCCh----hHHHhcccCCEeEecCCccc
Q 039018 136 LLRITDRSKNNFSGVLPA----ELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 136 ~L~~l~l~~n~~~~~~p~----~~~~~l~~L~~L~L~~n~l~ 173 (181)
.+++++++.|.++..-.. .+ ..++.++.+.++.|.+.
T Consensus 263 ~l~~l~l~~nsi~~~~~~~L~~~l-~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 263 TLRVLDLSRNSITEKGVRDLAEVL-VSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhcCCccccchHHHHHHH-hhhHHHHHhhcccCccc
Confidence 356677777776643322 22 34556666666666654
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.44 E-value=0.62 Score=21.97 Aligned_cols=14 Identities=57% Similarity=0.795 Sum_probs=12.6
Q ss_pred cCCCeeeccCcccc
Q 039018 10 SSLRYLDLSDNQFN 23 (181)
Q Consensus 10 ~~L~~L~ls~n~i~ 23 (181)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57999999999997
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.46 E-value=0.66 Score=37.37 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=31.7
Q ss_pred CCCCCccEEEccccc-ceeecCchhhcccccccccccccCCcccEEEccCCc-cccCCChhHHHhcccCCEeEecCCc
Q 039018 96 WTLRSLQILDIACNN-LSGAIPACISNSSARKEVGYTSILNLLRITDRSKNN-FSGVLPAELVTDLVALRSLNLFHNH 171 (181)
Q Consensus 96 ~~~~~L~~L~l~~n~-i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~-~~~~~p~~~~~~l~~L~~L~L~~n~ 171 (181)
..+.+|+.++++.+. ++...-..+.. .++.|+.|.+.++. ++..--..+...++.|+.|+++++.
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~-----------~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALAS-----------RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHh-----------hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 344666667766665 43222122221 12346666655554 3433223343556666666666544
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.08 E-value=0.66 Score=33.44 Aligned_cols=73 Identities=21% Similarity=0.164 Sum_probs=43.6
Q ss_pred cchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc-hhHhhhccCCCCCCCCccEEEcccc-cceeecCchhhcc
Q 039018 46 SLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI-LEIFHSFSRDNWTLRSLQILDIACN-NLSGAIPACISNS 122 (181)
Q Consensus 46 ~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~p~~~~~~ 122 (181)
.++. +.+++.+..+--+.+..+++++.+.+.++.-...- -+.+ . .-.++|+.|++++| +||..--..+..+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l---~---~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL---G---GLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHh---c---ccccchheeeccCCCeechhHHHHHHHh
Confidence 3444 67777776665566777888888888776532111 1122 0 24588999999977 5653333345554
Q ss_pred cc
Q 039018 123 SA 124 (181)
Q Consensus 123 ~~ 124 (181)
++
T Consensus 176 kn 177 (221)
T KOG3864|consen 176 KN 177 (221)
T ss_pred hh
Confidence 44
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=60.77 E-value=6.1 Score=17.93 Aligned_cols=15 Identities=40% Similarity=0.457 Sum_probs=11.3
Q ss_pred CcCCCeeeccCcc-cc
Q 039018 9 LSSLRYLDLSDNQ-FN 23 (181)
Q Consensus 9 l~~L~~L~ls~n~-i~ 23 (181)
++.|+.|++++|. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4678889998885 44
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=59.51 E-value=5.4 Score=32.07 Aligned_cols=91 Identities=20% Similarity=0.131 Sum_probs=52.3
Q ss_pred CCCCcEEEcCCCccccc--chhHhhhccCCCCCCCCccEEEcccc-cceeecCch-hhcccccccccccccCCcccEEEc
Q 039018 67 LREPRSISLSWANKSQE--ILEIFHSFSRDNWTLRSLQILDIACN-NLSGAIPAC-ISNSSARKEVGYTSILNLLRITDR 142 (181)
Q Consensus 67 l~~L~~L~l~~n~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~p~~-~~~~~~l~~~~~~n~l~~L~~l~l 142 (181)
.+.++.+.+..+.-... .-... ..++.|+.|+++.+ ......+.. ..... .+.+|+.+++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~---------~~~~L~~l~l 250 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALA-------LKCPNLEELDLSGCCLLITLSPLLLLLLLS---------ICRKLKSLDL 250 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHH-------hhCchhheecccCcccccccchhHhhhhhh---------hcCCcCccch
Confidence 56667776665543222 22233 57788888888763 111111110 00000 2456889999
Q ss_pred cCCc-cccCCChhHHHhcccCCEeEecCCc-cc
Q 039018 143 SKNN-FSGVLPAELVTDLVALRSLNLFHNH-FK 173 (181)
Q Consensus 143 ~~n~-~~~~~p~~~~~~l~~L~~L~L~~n~-l~ 173 (181)
+.+. ++...-..+...+++|+.|.+..+. ++
T Consensus 251 ~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 251 SGCGLVTDIGLSALASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred hhhhccCchhHHHHHhhCCCcceEccCCCCccc
Confidence 9887 6655445564558899999977665 44
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=56.73 E-value=0.58 Score=38.34 Aligned_cols=94 Identities=24% Similarity=0.231 Sum_probs=46.3
Q ss_pred CcCCCeeeccCcccccccCccccccccccCCccccccc-chh-ccccccccCC----CCcccCCC-CCCcEEEcCCCccc
Q 039018 9 LSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTS-LKH-SISYNVLEGK----LPTSFGRL-REPRSISLSWANKS 81 (181)
Q Consensus 9 l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~-L~~-~l~~n~~~~~----~~~~~~~l-~~L~~L~l~~n~~~ 81 (181)
..+++.|.+++|.++..... .+...+...+. +.. ++..|.+.+. +...+..+ ..++.+++..|.+.
T Consensus 203 ~~~le~L~L~~~~~t~~~c~-------~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~ 275 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCA-------LLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSIT 275 (478)
T ss_pred cccHHHHhhhhcCcChHHHH-------HHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence 44555566666555422111 11122333333 333 5666665532 22334444 56677777777776
Q ss_pred ccchhHhhhccCCCCCCCCccEEEcccccce
Q 039018 82 QEILEIFHSFSRDNWTLRSLQILDIACNNLS 112 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 112 (181)
......+.+. ...+..++.+.+++|.+.
T Consensus 276 ~~~~~~L~~~---l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 276 EKGVRDLAEV---LVSCRQLEELSLSNNPLT 303 (478)
T ss_pred ccchHHHHHH---HhhhHHHHHhhcccCccc
Confidence 4433322111 145557777777777664
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.73 E-value=21 Score=29.87 Aligned_cols=67 Identities=16% Similarity=0.009 Sum_probs=33.6
Q ss_pred CCCCcEEEcCCCcccccch-hHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCC
Q 039018 67 LREPRSISLSWANKSQEIL-EIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKN 145 (181)
Q Consensus 67 l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n 145 (181)
.+.+..+++++|++..... ..+. ...++|..|+|++|...-..-.++.+.+. ..|+.|-+.+|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~ssls------q~apklk~L~LS~N~~~~~~~~el~K~k~----------l~Leel~l~GN 280 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLS------QIAPKLKTLDLSHNHSKISSESELDKLKG----------LPLEELVLEGN 280 (585)
T ss_pred CcceeeeecccchhhchhhhhHHH------HhcchhheeecccchhhhcchhhhhhhcC----------CCHHHeeecCC
Confidence 3556666677776542110 1110 34567777777777221112223333332 22666777777
Q ss_pred cccc
Q 039018 146 NFSG 149 (181)
Q Consensus 146 ~~~~ 149 (181)
.+..
T Consensus 281 Plc~ 284 (585)
T KOG3763|consen 281 PLCT 284 (585)
T ss_pred cccc
Confidence 7653
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.56 E-value=22 Score=29.82 Aligned_cols=67 Identities=28% Similarity=0.283 Sum_probs=38.0
Q ss_pred CCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCC--ccccCCChhHHHhc--ccCCEeEecCCc
Q 039018 96 WTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKN--NFSGVLPAELVTDL--VALRSLNLFHNH 171 (181)
Q Consensus 96 ~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n--~~~~~~p~~~~~~l--~~L~~L~L~~n~ 171 (181)
-+.+.+..+.+++|++. .+-. +..+.. ..++|..|+|++| .+. ...++ .++ ..|+.|-+.+|.
T Consensus 215 ~n~p~i~sl~lsnNrL~-~Ld~-~sslsq--------~apklk~L~LS~N~~~~~--~~~el-~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLY-HLDA-LSSLSQ--------IAPKLKTLDLSHNHSKIS--SESEL-DKLKGLPLEELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccchhh-chhh-hhHHHH--------hcchhheeecccchhhhc--chhhh-hhhcCCCHHHeeecCCc
Confidence 35567777788888764 2111 111110 2456888999998 433 22233 333 346788888888
Q ss_pred cccc
Q 039018 172 FKEK 175 (181)
Q Consensus 172 l~~~ 175 (181)
+..+
T Consensus 282 lc~t 285 (585)
T KOG3763|consen 282 LCTT 285 (585)
T ss_pred cccc
Confidence 7643
No 89
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=28.62 E-value=41 Score=15.61 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=11.4
Q ss_pred HHHhcccCCEeEecC
Q 039018 155 LVTDLVALRSLNLFH 169 (181)
Q Consensus 155 ~~~~l~~L~~L~L~~ 169 (181)
++..+|+|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 448899999998653
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.70 E-value=49 Score=33.43 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=8.7
Q ss_pred ccccccchh-cccccccc
Q 039018 41 LGNLTSLKH-SISYNVLE 57 (181)
Q Consensus 41 l~~l~~L~~-~l~~n~~~ 57 (181)
|..+.+|+. +|++|.+.
T Consensus 15 F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 15 CANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred hccCCCceEEEeeCCccc
Confidence 344555555 55555544
Done!