Query 039018
Match_columns 181
No_of_seqs 126 out of 1191
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 08:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 2.7E-24 9.3E-29 180.5 13.5 177 2-179 458-723 (768)
2 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-24 5.1E-29 164.7 10.8 170 2-179 68-287 (313)
3 3rgz_A Protein brassinosteroid 99.9 1E-23 3.4E-28 177.1 12.7 117 2-125 410-540 (768)
4 4fcg_A Uncharacterized protein 99.9 9.5E-24 3.2E-28 161.3 11.1 170 1-181 95-298 (328)
5 1ogq_A PGIP-2, polygalacturona 99.9 9.1E-24 3.1E-28 160.4 10.8 158 10-176 50-237 (313)
6 4fcg_A Uncharacterized protein 99.8 1.2E-20 4.1E-25 144.1 12.2 162 1-173 118-314 (328)
7 3rfs_A Internalin B, repeat mo 99.8 6.3E-20 2.2E-24 136.5 13.2 153 4-177 57-222 (272)
8 3m19_A Variable lymphocyte rec 99.8 9.4E-20 3.2E-24 134.1 13.8 153 2-175 29-194 (251)
9 4eco_A Uncharacterized protein 99.8 6E-21 2.1E-25 157.3 8.0 172 2-178 198-394 (636)
10 1ozn_A Reticulon 4 receptor; N 99.8 1E-19 3.5E-24 136.1 13.4 162 5-174 51-239 (285)
11 4ecn_A Leucine-rich repeat pro 99.8 2.8E-20 9.6E-25 157.5 10.8 175 2-180 440-638 (876)
12 4eco_A Uncharacterized protein 99.8 1.1E-20 3.8E-25 155.7 7.6 133 37-179 198-371 (636)
13 1ozn_A Reticulon 4 receptor; N 99.8 7.9E-20 2.7E-24 136.7 11.3 163 2-174 26-215 (285)
14 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-19 4.1E-24 131.2 11.7 142 2-175 26-168 (220)
15 2z66_A Variable lymphocyte rec 99.8 3.5E-20 1.2E-24 139.9 9.0 171 2-180 43-243 (306)
16 2o6q_A Variable lymphocyte rec 99.8 4.1E-19 1.4E-23 132.0 14.5 124 42-173 82-218 (270)
17 3v47_A TOLL-like receptor 5B a 99.8 1.9E-19 6.5E-24 142.5 13.3 77 96-173 296-384 (455)
18 2o6q_A Variable lymphocyte rec 99.8 2.9E-19 1E-23 132.8 13.1 155 2-178 31-198 (270)
19 2z62_A TOLL-like receptor 4, v 99.8 2.8E-19 9.5E-24 133.1 12.7 165 5-177 47-241 (276)
20 2v9t_B SLIT homolog 2 protein 99.8 1.9E-19 6.6E-24 130.1 11.4 140 2-174 26-166 (220)
21 3e6j_A Variable lymphocyte rec 99.8 4.3E-19 1.5E-23 129.0 12.5 141 2-176 34-175 (229)
22 2z66_A Variable lymphocyte rec 99.8 9.7E-20 3.3E-24 137.4 8.2 129 39-175 120-263 (306)
23 1p9a_G Platelet glycoprotein I 99.8 3.5E-19 1.2E-23 133.8 10.9 154 2-180 25-191 (290)
24 1wwl_A Monocyte differentiatio 99.8 2.6E-20 9E-25 141.1 4.2 120 45-173 149-287 (312)
25 3zyi_A Leucine-rich repeat-con 99.8 1.1E-18 3.8E-23 138.4 13.7 156 4-173 93-279 (452)
26 3rfs_A Internalin B, repeat mo 99.8 1.5E-19 5.2E-24 134.5 8.2 151 5-181 80-243 (272)
27 3vq2_A TLR4, TOLL-like recepto 99.8 1.1E-19 3.9E-24 148.5 8.1 112 42-173 421-534 (606)
28 3t6q_A CD180 antigen; protein- 99.8 1.3E-18 4.4E-23 142.2 13.9 176 2-178 293-518 (606)
29 4ecn_A Leucine-rich repeat pro 99.8 8.7E-20 3E-24 154.5 6.7 133 37-180 440-614 (876)
30 2o6s_A Variable lymphocyte rec 99.8 2.3E-18 7.8E-23 123.1 13.2 143 2-177 22-165 (208)
31 3zyj_A Leucine-rich repeat-con 99.8 1.5E-18 5E-23 137.2 13.2 157 4-174 82-269 (440)
32 4g8a_A TOLL-like receptor 4; l 99.8 6.8E-19 2.3E-23 143.9 11.5 144 2-178 46-191 (635)
33 2z62_A TOLL-like receptor 4, v 99.8 1.7E-18 5.8E-23 128.9 12.3 113 2-127 22-153 (276)
34 4ezg_A Putative uncharacterize 99.8 2E-18 6.9E-23 122.6 12.1 110 41-174 84-195 (197)
35 2id5_A Lingo-1, leucine rich r 99.8 3E-18 1E-22 136.5 14.0 173 4-177 50-265 (477)
36 1xku_A Decorin; proteoglycan, 99.8 2.1E-18 7.3E-23 131.4 12.5 168 5-176 71-279 (330)
37 3m19_A Variable lymphocyte rec 99.8 3.4E-18 1.2E-22 125.7 12.9 149 10-180 14-175 (251)
38 2z80_A TOLL-like receptor 2, v 99.8 7E-19 2.4E-23 135.3 9.3 165 5-179 71-295 (353)
39 2o6s_A Variable lymphocyte rec 99.8 5.9E-19 2E-23 126.2 8.3 140 4-181 46-186 (208)
40 3t6q_A CD180 antigen; protein- 99.8 1.9E-18 6.6E-23 141.2 12.2 158 2-180 27-199 (606)
41 3vq2_A TLR4, TOLL-like recepto 99.8 1.6E-18 5.5E-23 141.7 11.4 140 2-174 26-167 (606)
42 3oja_B Anopheles plasmodium-re 99.8 9.4E-18 3.2E-22 137.3 15.9 171 3-175 92-339 (597)
43 1xku_A Decorin; proteoglycan, 99.8 6.2E-18 2.1E-22 128.8 13.9 159 2-173 46-229 (330)
44 2id5_A Lingo-1, leucine rich r 99.8 2E-18 6.9E-23 137.5 11.6 153 2-175 26-191 (477)
45 3zyj_A Leucine-rich repeat-con 99.8 3E-18 1E-22 135.5 12.3 149 2-173 58-220 (440)
46 3o6n_A APL1; leucine-rich repe 99.8 1.2E-17 4.1E-22 130.0 15.5 169 4-174 87-332 (390)
47 3zyi_A Leucine-rich repeat-con 99.8 2.3E-18 8E-23 136.5 11.5 158 2-180 69-262 (452)
48 3v47_A TOLL-like receptor 5B a 99.8 3.1E-18 1.1E-22 135.5 11.9 138 10-178 275-413 (455)
49 2ft3_A Biglycan; proteoglycan, 99.8 6.5E-18 2.2E-22 128.9 13.0 169 3-177 71-281 (332)
50 1w8a_A SLIT protein; signaling 99.8 2.8E-18 9.7E-23 121.4 10.1 130 13-176 11-142 (192)
51 2xot_A Amphoterin-induced prot 99.8 5.8E-18 2E-22 130.7 12.3 139 2-173 33-176 (361)
52 2z81_A CD282 antigen, TOLL-lik 99.8 2E-18 6.8E-23 139.6 9.8 151 1-172 19-184 (549)
53 2z80_A TOLL-like receptor 2, v 99.8 1.9E-18 6.4E-23 132.9 9.1 152 2-174 46-236 (353)
54 1wwl_A Monocyte differentiatio 99.8 2.5E-18 8.7E-23 130.2 9.5 74 97-173 226-309 (312)
55 2ell_A Acidic leucine-rich nuc 99.8 6.5E-18 2.2E-22 116.9 10.6 138 8-180 22-166 (168)
56 2z7x_B TOLL-like receptor 1, v 99.8 9.9E-18 3.4E-22 134.8 12.5 128 42-179 321-462 (520)
57 2z63_A TOLL-like receptor 4, v 99.7 2.1E-18 7.1E-23 139.9 8.3 131 40-178 391-536 (570)
58 2xwt_C Thyrotropin receptor; s 99.7 4.9E-18 1.7E-22 123.9 9.4 153 5-179 50-223 (239)
59 1ziw_A TOLL-like receptor 3; i 99.7 8.3E-18 2.8E-22 139.2 11.6 157 2-179 19-190 (680)
60 2ft3_A Biglycan; proteoglycan, 99.7 1.9E-17 6.4E-22 126.3 12.6 157 2-180 48-260 (332)
61 1ziw_A TOLL-like receptor 3; i 99.7 1.4E-17 4.8E-22 137.8 12.8 163 3-173 398-597 (680)
62 3o6n_A APL1; leucine-rich repe 99.7 5E-18 1.7E-22 132.1 9.5 100 6-112 65-178 (390)
63 3j0a_A TOLL-like receptor 5; m 99.7 9.4E-18 3.2E-22 142.2 11.8 149 9-177 23-191 (844)
64 3oja_A Leucine-rich immune mol 99.7 3.4E-18 1.1E-22 137.0 8.6 104 67-180 119-233 (487)
65 3oja_B Anopheles plasmodium-re 99.7 5.3E-18 1.8E-22 138.8 9.7 100 6-112 71-184 (597)
66 2v9t_B SLIT homolog 2 protein 99.7 2.4E-17 8.1E-22 119.1 11.6 133 13-180 14-148 (220)
67 1p9a_G Platelet glycoprotein I 99.7 2E-17 7E-22 124.2 11.6 149 3-174 48-209 (290)
68 4b8c_D Glucose-repressible alc 99.7 1.6E-18 5.5E-23 144.7 5.0 143 3-180 217-361 (727)
69 2z63_A TOLL-like receptor 4, v 99.7 3E-17 1E-21 133.0 12.3 157 2-179 22-196 (570)
70 3e6j_A Variable lymphocyte rec 99.7 6E-17 2.1E-21 117.6 12.6 130 12-177 21-151 (229)
71 2v70_A SLIT-2, SLIT homolog 2 99.7 3.1E-17 1.1E-21 118.5 10.9 135 12-180 13-149 (220)
72 4glp_A Monocyte differentiatio 99.7 9.5E-18 3.3E-22 126.9 7.9 149 7-174 114-286 (310)
73 4ezg_A Putative uncharacterize 99.7 3.1E-17 1.1E-21 116.4 9.2 133 7-177 41-175 (197)
74 3j0a_A TOLL-like receptor 5; m 99.7 2E-17 6.7E-22 140.3 9.6 159 3-179 41-223 (844)
75 1h6u_A Internalin H; cell adhe 99.7 1.1E-16 3.8E-21 121.1 12.8 62 5-81 58-120 (308)
76 2wfh_A SLIT homolog 2 protein 99.7 4.8E-17 1.6E-21 115.3 10.1 127 13-174 13-140 (193)
77 2xwt_C Thyrotropin receptor; s 99.7 1.4E-17 4.8E-22 121.4 7.4 148 2-174 26-194 (239)
78 2z81_A CD282 antigen, TOLL-lik 99.7 2E-17 6.9E-22 133.6 8.9 153 3-174 43-210 (549)
79 1w8a_A SLIT protein; signaling 99.7 7.4E-17 2.5E-21 114.1 10.4 120 2-152 23-143 (192)
80 2je0_A Acidic leucine-rich nuc 99.7 8.2E-17 2.8E-21 109.2 10.0 129 8-169 15-149 (149)
81 2z7x_B TOLL-like receptor 1, v 99.7 3.9E-17 1.3E-21 131.3 9.8 146 7-175 321-483 (520)
82 4glp_A Monocyte differentiatio 99.7 2.3E-17 7.8E-22 124.8 7.5 153 9-180 90-270 (310)
83 1h6u_A Internalin H; cell adhe 99.7 9.3E-17 3.2E-21 121.5 10.7 140 6-174 81-231 (308)
84 3o53_A Protein LRIM1, AGAP0063 99.7 4.4E-17 1.5E-21 123.7 8.9 151 4-180 52-233 (317)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.2E-16 3.9E-21 129.9 11.7 128 42-179 350-491 (562)
86 2o6r_A Variable lymphocyte rec 99.7 1.2E-16 4E-21 111.5 9.8 132 12-177 9-141 (177)
87 2xot_A Amphoterin-induced prot 99.7 1.5E-16 5E-21 122.9 11.0 141 5-174 58-203 (361)
88 1h6t_A Internalin B; cell adhe 99.7 1.7E-16 5.9E-21 119.2 10.9 139 6-173 64-213 (291)
89 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.2E-16 4.2E-21 129.7 9.8 147 7-176 350-513 (562)
90 4g8a_A TOLL-like receptor 4; l 99.7 4.1E-16 1.4E-20 127.5 12.2 153 4-174 414-581 (635)
91 1a9n_A U2A', U2A'; complex (nu 99.7 1.5E-16 5.2E-21 110.9 8.0 133 5-173 14-153 (176)
92 4fmz_A Internalin; leucine ric 99.7 6.3E-16 2.2E-20 118.3 10.9 121 41-175 195-326 (347)
93 1h6t_A Internalin B; cell adhe 99.7 6.2E-16 2.1E-20 116.1 10.4 141 7-177 43-194 (291)
94 1m9s_A Internalin B; cell inva 99.6 1.9E-15 6.4E-20 123.9 13.0 142 5-175 60-212 (605)
95 1xeu_A Internalin C; cellular 99.6 1.5E-15 5.2E-20 112.4 11.0 140 6-175 37-187 (263)
96 1dce_A Protein (RAB geranylger 99.6 1.7E-16 5.7E-21 129.3 5.9 106 47-177 443-550 (567)
97 2ca6_A RAN GTPase-activating p 99.6 8.3E-18 2.8E-22 130.7 -2.4 125 45-176 159-319 (386)
98 3oja_A Leucine-rich immune mol 99.6 1.4E-16 4.7E-21 127.6 4.3 154 6-173 76-250 (487)
99 4b8c_D Glucose-repressible alc 99.6 8.7E-17 3E-21 134.3 3.2 119 37-179 216-335 (727)
100 1o6v_A Internalin A; bacterial 99.6 1.6E-15 5.5E-20 120.6 10.3 118 41-174 261-389 (466)
101 2wfh_A SLIT homolog 2 protein 99.6 3.3E-15 1.1E-19 105.8 10.7 115 2-149 25-140 (193)
102 4ay9_X Follicle-stimulating ho 99.6 1.9E-15 6.6E-20 116.1 9.8 43 135-179 177-220 (350)
103 1xeu_A Internalin C; cellular 99.6 1.7E-15 5.7E-20 112.2 9.0 138 8-175 17-165 (263)
104 4fmz_A Internalin; leucine ric 99.6 4.2E-15 1.4E-19 113.7 11.3 149 6-173 173-346 (347)
105 2ca6_A RAN GTPase-activating p 99.6 3.2E-17 1.1E-21 127.4 -0.7 41 42-82 91-136 (386)
106 2ast_B S-phase kinase-associat 99.6 3.9E-16 1.4E-20 118.8 4.8 149 4-171 87-258 (336)
107 3bz5_A Internalin-J, INLJ; leu 99.6 7.1E-15 2.4E-19 116.9 12.0 71 41-127 81-152 (457)
108 3bz5_A Internalin-J, INLJ; leu 99.6 1E-14 3.5E-19 116.0 12.5 148 6-177 81-250 (457)
109 3o53_A Protein LRIM1, AGAP0063 99.6 1.6E-15 5.4E-20 115.1 7.5 155 6-173 76-250 (317)
110 1o6v_A Internalin A; bacterial 99.6 8E-15 2.7E-19 116.6 11.8 155 6-177 195-370 (466)
111 1dce_A Protein (RAB geranylger 99.6 8.6E-15 2.9E-19 119.2 11.7 122 11-167 442-567 (567)
112 3goz_A Leucine-rich repeat-con 99.6 1.5E-16 5E-21 122.8 1.1 39 135-174 196-239 (362)
113 2ast_B S-phase kinase-associat 99.6 5.8E-16 2E-20 117.9 4.4 150 10-179 70-242 (336)
114 3cvr_A Invasion plasmid antige 99.6 3.1E-15 1.1E-19 121.6 8.5 150 2-179 74-249 (571)
115 1m9s_A Internalin B; cell inva 99.6 7.4E-15 2.5E-19 120.3 9.8 141 7-177 40-191 (605)
116 2je0_A Acidic leucine-rich nuc 99.6 7.2E-15 2.5E-19 99.5 8.2 110 44-175 16-128 (149)
117 2ell_A Acidic leucine-rich nuc 99.6 4.9E-15 1.7E-19 102.3 6.9 118 2-153 41-164 (168)
118 2o6r_A Variable lymphocyte rec 99.6 2.7E-14 9.2E-19 99.4 10.0 119 2-152 22-141 (177)
119 1jl5_A Outer protein YOPM; leu 99.5 5.2E-15 1.8E-19 117.5 6.0 141 7-178 8-170 (454)
120 1ds9_A Outer arm dynein; leuci 99.5 5E-17 1.7E-21 115.4 -6.3 88 10-112 18-106 (198)
121 1ds9_A Outer arm dynein; leuci 99.5 7.1E-17 2.4E-21 114.7 -5.6 133 3-173 41-185 (198)
122 1jl5_A Outer protein YOPM; leu 99.5 2E-13 6.8E-18 108.4 13.6 19 5-23 148-166 (454)
123 4ay9_X Follicle-stimulating ho 99.5 3.4E-14 1.2E-18 109.1 8.6 156 1-179 23-196 (350)
124 3g39_A Variable lymphocyte rec 99.5 6.4E-14 2.2E-18 97.1 9.2 107 11-150 10-117 (170)
125 3cvr_A Invasion plasmid antige 99.5 1.1E-13 3.9E-18 112.5 11.5 129 11-178 60-197 (571)
126 3g39_A Variable lymphocyte rec 99.5 1.2E-13 4E-18 95.8 9.9 105 48-175 12-117 (170)
127 2r9u_A Variable lymphocyte rec 99.5 1.5E-13 5.2E-18 95.6 9.9 108 12-153 14-122 (174)
128 2r9u_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 96.5 8.7 102 50-174 18-119 (174)
129 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-13 4.8E-18 95.7 8.9 112 41-178 15-130 (176)
130 3goz_A Leucine-rich repeat-con 99.5 8.5E-15 2.9E-19 113.0 2.8 157 8-174 20-210 (362)
131 1z7x_W Ribonuclease inhibitor; 99.5 6.3E-16 2.2E-20 122.3 -3.7 130 43-175 254-413 (461)
132 3g06_A SSPH2 (leucine-rich rep 99.5 1.4E-13 4.8E-18 113.1 10.0 75 98-178 220-302 (622)
133 1z7x_W Ribonuclease inhibitor; 99.4 7.8E-15 2.7E-19 116.1 0.4 159 6-174 52-241 (461)
134 3g06_A SSPH2 (leucine-rich rep 99.4 2E-12 6.9E-17 106.2 13.0 124 2-152 55-197 (622)
135 2ifg_A High affinity nerve gro 99.4 2.3E-12 7.8E-17 98.6 9.9 103 14-149 12-117 (347)
136 2ifg_A High affinity nerve gro 99.3 3.7E-12 1.3E-16 97.4 9.1 101 50-173 14-116 (347)
137 3un9_A NLR family member X1; l 99.2 2.6E-12 9E-17 99.5 1.7 41 134-174 210-253 (372)
138 3ogk_B Coronatine-insensitive 99.1 2.2E-11 7.5E-16 99.1 2.3 156 8-173 110-306 (592)
139 3ogk_B Coronatine-insensitive 99.0 2.2E-11 7.5E-16 99.1 0.5 42 134-175 487-528 (592)
140 3sb4_A Hypothetical leucine ri 99.0 1.1E-09 3.8E-14 83.2 8.9 74 98-173 225-310 (329)
141 3un9_A NLR family member X1; l 99.0 1.7E-11 6E-16 94.9 -2.1 144 9-174 71-225 (372)
142 3sb4_A Hypothetical leucine ri 99.0 1.7E-09 5.9E-14 82.1 8.9 91 67-166 225-327 (329)
143 2p1m_B Transport inhibitor res 98.8 5.9E-10 2E-14 90.6 1.5 62 8-79 128-195 (594)
144 2p1m_B Transport inhibitor res 98.8 1.2E-09 4.1E-14 88.8 1.3 89 65-173 429-519 (594)
145 2ra8_A Uncharacterized protein 98.7 1.4E-09 4.9E-14 83.8 0.7 41 134-174 278-321 (362)
146 1io0_A Tropomodulin; LRR prote 98.7 1.6E-09 5.5E-14 75.9 -1.2 118 41-173 32-164 (185)
147 4fdw_A Leucine rich hypothetic 98.7 2.8E-07 9.5E-12 72.0 11.2 156 4-173 174-358 (401)
148 3rw6_A Nuclear RNA export fact 98.6 1E-07 3.5E-12 70.4 7.1 82 66-166 168-257 (267)
149 1io0_A Tropomodulin; LRR prote 98.6 9.8E-09 3.4E-13 71.8 1.3 125 6-148 32-164 (185)
150 2ra8_A Uncharacterized protein 98.4 3.4E-07 1.2E-11 70.5 4.9 154 6-174 135-293 (362)
151 3rw6_A Nuclear RNA export fact 98.3 1.5E-06 5E-11 64.2 6.1 67 96-177 167-237 (267)
152 4fdw_A Leucine rich hypothetic 98.2 5.4E-06 1.8E-10 64.7 8.6 117 45-172 248-382 (401)
153 3e4g_A ATP synthase subunit S, 98.2 1.2E-06 4.3E-11 60.5 4.0 88 68-171 61-150 (176)
154 3e4g_A ATP synthase subunit S, 97.8 1.2E-05 4E-10 55.6 3.0 86 44-148 60-153 (176)
155 1pgv_A TMD-1, tropomodulin TMD 97.5 1.1E-05 3.9E-10 56.7 -0.5 15 98-112 97-111 (197)
156 3rfe_A Platelet glycoprotein I 97.4 0.00021 7.1E-09 46.8 4.5 37 99-148 31-68 (130)
157 4gt6_A Cell surface protein; l 97.2 0.0012 3.9E-08 51.1 8.1 10 137-146 359-368 (394)
158 4fs7_A Uncharacterized protein 97.2 0.0018 6.2E-08 50.0 8.5 84 64-170 293-376 (394)
159 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00041 1.4E-08 48.7 4.2 87 65-170 38-136 (197)
160 4h09_A Hypothetical leucine ri 96.9 0.005 1.7E-07 47.1 8.8 105 41-168 236-341 (379)
161 4gt6_A Cell surface protein; l 96.9 0.0064 2.2E-07 46.9 9.1 87 62-171 282-368 (394)
162 4fs7_A Uncharacterized protein 96.6 0.0065 2.2E-07 46.9 7.5 101 40-165 292-393 (394)
163 4h09_A Hypothetical leucine ri 96.5 0.011 3.7E-07 45.3 7.9 79 40-127 258-337 (379)
164 3rfe_A Platelet glycoprotein I 96.0 0.01 3.6E-07 38.6 4.8 35 47-81 33-68 (130)
165 2lz0_A Uncharacterized protein 24.3 76 0.0026 18.9 3.1 35 41-76 16-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=2.7e-24 Score=180.51 Aligned_cols=177 Identities=25% Similarity=0.284 Sum_probs=129.9
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCC
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRL 67 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l 67 (181)
+|..+..+++|+.|++++|.+.+.+|..+.. +.+.+|..++.+++|+. ++++|.+.+.+|..++.+
T Consensus 458 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 3445555566666666666666555555543 34456666777777777 777777777777777777
Q ss_pred CCCcEEEcCCCcccccchhHhhhc--------------------------------------------------------
Q 039018 68 REPRSISLSWANKSQEILEIFHSF-------------------------------------------------------- 91 (181)
Q Consensus 68 ~~L~~L~l~~n~~~~~~~~~~~~~-------------------------------------------------------- 91 (181)
++|++|++++|.+.+.+|..+...
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 777777777777766666543211
Q ss_pred -------cCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccccCCC
Q 039018 92 -------SRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLP 152 (181)
Q Consensus 92 -------~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p 152 (181)
+..+..+..|+.|++++|+++|.+|.+++.++.|++ .+.+| .+++|++|++++|+++|.+|
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 112344677889999999999999999999999888 66666 67789999999999999999
Q ss_pred hhHHHhcccCCEeEecCCcccccCCCC
Q 039018 153 AELVTDLVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 153 ~~~~~~l~~L~~L~L~~n~l~~~~p~~ 179 (181)
..+ +.++.|++|++++|+++|.+|..
T Consensus 698 ~~l-~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 698 QAM-SALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGG-GGCCCCSEEECCSSEEEEECCSS
T ss_pred hHH-hCCCCCCEEECcCCcccccCCCc
Confidence 888 99999999999999999999864
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.5e-24 Score=164.70 Aligned_cols=170 Identities=26% Similarity=0.365 Sum_probs=118.9
Q ss_pred CCCCCCCCcCCCeeeccC-cccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCC
Q 039018 2 IPNGPENLSSLRYLDLSD-NQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGR 66 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~-n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~ 66 (181)
+|..+.++++|+.|++++ |.+.+.+|+.+.. +.+.+|..+.++++|++ ++++|.+.+..|..+..
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence 566677777777777774 7777667766654 34456667777777777 77777777777777777
Q ss_pred CCCCcEEEcCCCcccccchhHhhhccCCCCCCC-CccEEEcccccce-----------------------eecCchhhcc
Q 039018 67 LREPRSISLSWANKSQEILEIFHSFSRDNWTLR-SLQILDIACNNLS-----------------------GAIPACISNS 122 (181)
Q Consensus 67 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~i~-----------------------~~~p~~~~~~ 122 (181)
+++|++|++++|.+.+..|..+ ..+. .|+.|++++|+++ +..|..+..+
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l-------~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l 220 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSY-------GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGG-------GCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTT
T ss_pred CCCCCeEECcCCcccCcCCHHH-------hhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcC
Confidence 7777777777777776666666 4444 4555555555444 4444455555
Q ss_pred ccccc-ccccc----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018 123 SARKE-VGYTS----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 123 ~~l~~-~~~~n----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~ 179 (181)
++|++ .+.+| .+++|++|++++|++++.+|..+ ..+++|+.|++++|.++|.+|..
T Consensus 221 ~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp SCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG-GGCTTCCEEECCSSEEEEECCCS
T ss_pred CCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHH-hcCcCCCEEECcCCcccccCCCC
Confidence 55555 33333 45678888999998888888887 88999999999999999888864
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1e-23 Score=177.09 Aligned_cols=117 Identities=30% Similarity=0.393 Sum_probs=56.8
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCC
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRL 67 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l 67 (181)
+|..+.++++|+.|++++|.+.+.+|+.+.. +.+.+|..+..+++|+. ++++|.+.+..|..+..+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 3445555566666666666665555554443 22344444445555555 555555554455555555
Q ss_pred CCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccc
Q 039018 68 REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125 (181)
Q Consensus 68 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l 125 (181)
++|++|++++|.+.+..|..+ +.+++|+.|++++|++++.+|..++.+++|
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~-------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWI-------GRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGG-------GGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred CCCCEEEccCCccCCcCChHH-------hcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence 555555555555544444444 333444444444444433333333333333
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=9.5e-24 Score=161.30 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=132.9
Q ss_pred CCCCCCCCCcCCCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCC-
Q 039018 1 PIPNGPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGR- 66 (181)
Q Consensus 1 ~lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~- 66 (181)
++|..++++++|++|++++|.+. .+|+.+.. ....+|..++++++|+. ++++|.+.+.+|..+..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence 36778888888888888888888 67765544 11256667777777777 77777777677766554
Q ss_pred --------CCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----
Q 039018 67 --------LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----- 132 (181)
Q Consensus 67 --------l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----- 132 (181)
+++|++|++++|.+. .+|..+ ..+++|+.|++++|.++ .+|..+..+++|++ .+.+|
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-------~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASI-------ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEECCC-CCCGGG-------GGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCB
T ss_pred cchhhhccCCCCCEEECcCCCcC-cchHhh-------cCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhh
Confidence 777888888777776 566666 78888888888888888 57777888888888 55554
Q ss_pred ------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCCC
Q 039018 133 ------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSIH 181 (181)
Q Consensus 133 ------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i~ 181 (181)
.+++|++|++++|.+.+.+|..+ ..+++|+.|+|++|.+.+.+|++++
T Consensus 245 ~p~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCCCTTCCCCCCEEECTTCTTCCBCCTTG-GGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred hHHHhcCCCCCCEEECCCCCchhhcchhh-hcCCCCCEEeCCCCCchhhccHHHh
Confidence 57789999999998888899887 9999999999999999999998763
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=9.1e-24 Score=160.37 Aligned_cols=158 Identities=21% Similarity=0.258 Sum_probs=127.2
Q ss_pred cCCCeeeccCccccc--ccCccccc--------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCcE
Q 039018 10 SSLRYLDLSDNQFNS--TIPEWISR--------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRS 72 (181)
Q Consensus 10 ~~L~~L~ls~n~i~~--~~p~~~~~--------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~ 72 (181)
.+++.|++++|.+.+ .+|+.+.. +.+.+|..++++++|+. ++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999999998 78887765 33478889999999999 99999999899999999999999
Q ss_pred EEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccc-cccc-ccccc-----------cCCcccE
Q 039018 73 ISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSS-ARKE-VGYTS-----------ILNLLRI 139 (181)
Q Consensus 73 L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~-~l~~-~~~~n-----------~l~~L~~ 139 (181)
|++++|.+.+..|..+ ..+++|+.|++++|++++.+|..++.+. .|++ .+.+| .+. |++
T Consensus 130 L~Ls~N~l~~~~p~~~-------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSI-------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp EECCSSEEESCCCGGG-------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred EeCCCCccCCcCChHH-------hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 9999999998899999 8999999999999999999999999888 8887 55555 222 666
Q ss_pred EEccCCccccCCChhHHHhcccCCEeEecCCcccccC
Q 039018 140 TDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKF 176 (181)
Q Consensus 140 l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 176 (181)
|++++|.+++..|..+ ..+++|+.|++++|.+++.+
T Consensus 202 L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLF-GSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp EECCSSEEEECCGGGC-CTTSCCSEEECCSSEECCBG
T ss_pred EECcCCcccCcCCHHH-hcCCCCCEEECCCCceeeec
Confidence 6676666665555444 55555555555555555433
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.2e-20 Score=144.09 Aligned_cols=162 Identities=18% Similarity=0.208 Sum_probs=137.2
Q ss_pred CCCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccc---------cccchh-cccccccc
Q 039018 1 PIPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGN---------LTSLKH-SISYNVLE 57 (181)
Q Consensus 1 ~lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~---------l~~L~~-~l~~n~~~ 57 (181)
++|..+.++++|++|++++|.+. .+|+.+.. ..+.+|..+.. +++|++ ++++|.+.
T Consensus 118 ~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence 36888888899999999999888 77877665 34456666554 889999 99999998
Q ss_pred CCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc----
Q 039018 58 GKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---- 132 (181)
Q Consensus 58 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---- 132 (181)
.+|..++.+++|++|++++|.+.+ +|..+ ..+++|+.|++++|.+.+.+|..++.+++|++ .+.+|
T Consensus 197 -~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l-------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 197 -SLPASIANLQNLKSLKIRNSPLSA-LGPAI-------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp -CCCGGGGGCTTCCEEEEESSCCCC-CCGGG-------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred -cchHhhcCCCCCCEEEccCCCCCc-Cchhh-------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 888889999999999999999884 55667 78899999999999888888988999999988 55554
Q ss_pred -------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 133 -------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 133 -------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
.+++|++|++++|.+.+.+|+.+ +.+++|+.+++..+.+.
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l-~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLI-AQLPANCIILVPPHLQA 314 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGG-GGSCTTCEEECCGGGSC
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHH-hhccCceEEeCCHHHHH
Confidence 67889999999999999999998 99999999999987765
No 7
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=6.3e-20 Score=136.54 Aligned_cols=153 Identities=22% Similarity=0.251 Sum_probs=109.8
Q ss_pred CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018 4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ 82 (181)
Q Consensus 4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 82 (181)
+.+..+++|+.|++++|.+.+ ++ .+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~-~~------------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 123 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHD-IS------------ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCC-CG------------GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred cccccCCCCcEEECCCCCCCC-ch------------hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc
Confidence 346777888888888888873 22 3566777777 777777775555556777788888888777776
Q ss_pred cchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccccC
Q 039018 83 EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGV 150 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~ 150 (181)
..+..+ ..+++|+.|++++|.+++..+..+..+++|++ .+.+| .+++|++|++++|.+++.
T Consensus 124 ~~~~~~-------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 124 LPDGVF-------DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp CCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cCHHHh-------ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 555556 67777777777777777444455667777666 44444 456788999999998855
Q ss_pred CChhHHHhcccCCEeEecCCcccccCC
Q 039018 151 LPAELVTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 151 ~p~~~~~~l~~L~~L~L~~n~l~~~~p 177 (181)
.+..+ ..+++|+.|++++|.+.+..|
T Consensus 197 ~~~~~-~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 197 PDGVF-DRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CTTTT-TTCTTCCEEECCSSCBCCCTT
T ss_pred CHHHH-hCCcCCCEEEccCCCccccCc
Confidence 44444 888899999998888876655
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=9.4e-20 Score=134.06 Aligned_cols=153 Identities=24% Similarity=0.281 Sum_probs=99.8
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+. +.++.|++++|.+.+..+ ..+.++++|++ ++++|.+.+..+..+..+++|++|++++|.+
T Consensus 29 ~p~~~~--~~l~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 29 VPSGIP--ADTEKLDLQSTGLATLSD-----------ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp CCSCCC--TTCCEEECTTSCCCCCCT-----------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCC--CCCCEEEccCCCcCccCH-----------hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 455443 467777777777764333 33556667777 7777777765555666777777777777776
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFS 148 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~ 148 (181)
.+..+..+ ..+++|+.|++++|++++..+..+..+++|++ .+.+| .+++|++|++++|+++
T Consensus 96 ~~~~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 96 ASLPLGVF-------DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CCCCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cccChhHh-------cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 65555555 66677777777777776333344566666555 33333 3566888888888888
Q ss_pred cCCChhHHHhcccCCEeEecCCccccc
Q 039018 149 GVLPAELVTDLVALRSLNLFHNHFKEK 175 (181)
Q Consensus 149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~ 175 (181)
+..+..+ ..+++|+.|++++|.+++.
T Consensus 169 ~~~~~~~-~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 169 SVPHGAF-DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTT-TTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHH-hCCCCCCEEEeeCCceeCC
Confidence 4434344 7888888888888888765
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=6e-21 Score=157.30 Aligned_cols=172 Identities=20% Similarity=0.239 Sum_probs=100.3
Q ss_pred CCCCCCCCcCCCeeeccCcccccc-cC-----ccccccccccCCccc--ccccchh-ccccccccCCCCcccCCCCCCcE
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNST-IP-----EWISRINCTISSGLG--NLTSLKH-SISYNVLEGKLPTSFGRLREPRS 72 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~-~p-----~~~~~~~~~l~~~l~--~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~ 72 (181)
||..++++++|++|++++|.+.+. ++ .......+.+|..++ ++++|+. ++++|.+.+.+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 688899999999999999999963 11 100001111566777 8888888 88888888888888888888999
Q ss_pred EEcCCCc-ccc-cchhHhhhccCCCCCCCCccEEEcccccceeecCc--hhhccccccc-ccccc----------cCCcc
Q 039018 73 ISLSWAN-KSQ-EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA--CISNSSARKE-VGYTS----------ILNLL 137 (181)
Q Consensus 73 L~l~~n~-~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~--~~~~~~~l~~-~~~~n----------~l~~L 137 (181)
|++++|. +.+ .+|..+..+. ....+++|+.|++++|.++ .+|. .++.+++|++ .+.+| .+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~-~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALA-DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHH-HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhh-ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCC
Confidence 9988887 777 6777663210 0001144444555444444 4444 4444444444 22222 12234
Q ss_pred cEEEccCCccccCCChhHHHhccc-CCEeEecCCcccccCCC
Q 039018 138 RITDRSKNNFSGVLPAELVTDLVA-LRSLNLFHNHFKEKFPG 178 (181)
Q Consensus 138 ~~l~l~~n~~~~~~p~~~~~~l~~-L~~L~L~~n~l~~~~p~ 178 (181)
++|++++|.++ .+|..+ ..+++ |+.|++++|.++ .+|.
T Consensus 356 ~~L~L~~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANF-CGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp SEEECCSSEEE-ECCTTS-EEECTTCCEEECCSSCCS-SCCS
T ss_pred CEEECCCCccc-cccHhh-hhhcccCcEEEccCCcCc-ccch
Confidence 44444444444 444443 44444 444444444444 3443
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=1e-19 Score=136.06 Aligned_cols=162 Identities=19% Similarity=0.098 Sum_probs=85.7
Q ss_pred CCCCCcCCCeeeccCcccccccCccccc-------------ccccc-CCcccccccchh-ccccccccCCCCcccCCCCC
Q 039018 5 GPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTI-SSGLGNLTSLKH-SISYNVLEGKLPTSFGRLRE 69 (181)
Q Consensus 5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l-~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~ 69 (181)
.+.++++|+.|++++|.+++..|..+.. ....+ +..+..+++|+. ++++|.+.+..+..+..+++
T Consensus 51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence 4556666666666666665433433322 01111 334444555555 55555555444444555555
Q ss_pred CcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcc
Q 039018 70 PRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLL 137 (181)
Q Consensus 70 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L 137 (181)
|++|++++|.+.+..+..+ ..+++|+.|++++|++++..+..+..+++|++ .+.+| .+++|
T Consensus 131 L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 203 (285)
T 1ozn_A 131 LQYLYLQDNALQALPDDTF-------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203 (285)
T ss_dssp CCEEECCSSCCCCCCTTTT-------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCEEECCCCcccccCHhHh-------ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence 5555555555544333334 55666666666666665333344555666555 33333 34556
Q ss_pred cEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018 138 RITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 138 ~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~ 174 (181)
+.|++++|.+++ ++...+..+++|+.|++++|.+..
T Consensus 204 ~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 204 MTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccC
Confidence 666666666663 343323666666666666666653
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=2.8e-20 Score=157.48 Aligned_cols=175 Identities=18% Similarity=0.203 Sum_probs=139.9
Q ss_pred CCCCCCCCcCCCeeeccCcccccc-cCccc-----cccccccCCccc--ccccchh-ccccccccCCCCcccCCCCCCcE
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNST-IPEWI-----SRINCTISSGLG--NLTSLKH-SISYNVLEGKLPTSFGRLREPRS 72 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~-~p~~~-----~~~~~~l~~~l~--~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~ 72 (181)
||..++++++|+.|++++|.+.+. +|... ....+.+|..++ ++++|+. ++++|.+.+.+|..++.+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 788999999999999999999962 21111 001123667777 9999999 99999999899999999999999
Q ss_pred EEcCCCc-ccc-cchhHhhhccCCCCCCCCccEEEcccccceeecCc--hhhccccccc-ccccc---------cCCccc
Q 039018 73 ISLSWAN-KSQ-EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA--CISNSSARKE-VGYTS---------ILNLLR 138 (181)
Q Consensus 73 L~l~~n~-~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~--~~~~~~~l~~-~~~~n---------~l~~L~ 138 (181)
|++++|. +.+ .+|..+..+......+++|+.|++++|.++ .+|. .++.+++|++ .+.+| .+++|+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~ 598 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT 598 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEES
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcce
Confidence 9999998 887 788887544433455669999999999998 8888 8889888888 55555 456788
Q ss_pred EEEccCCccccCCChhHHHhccc-CCEeEecCCcccccCCCCC
Q 039018 139 ITDRSKNNFSGVLPAELVTDLVA-LRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 139 ~l~l~~n~~~~~~p~~~~~~l~~-L~~L~L~~n~l~~~~p~~i 180 (181)
.|++++|.++ .+|..+ ..+++ |+.|+|++|.++ .+|..+
T Consensus 599 ~L~Ls~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 599 DLKLDYNQIE-EIPEDF-CAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp EEECCSSCCS-CCCTTS-CEECTTCCEEECCSSCCC-SCCSCC
T ss_pred EEECcCCccc-cchHHH-hhccccCCEEECcCCCCC-cCchhh
Confidence 8899998888 788777 88888 888888888888 788765
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=1.1e-20 Score=155.72 Aligned_cols=133 Identities=18% Similarity=0.278 Sum_probs=97.6
Q ss_pred cCCcccccccchh-ccccccccCC-----------------CCcccC--CCCCCcEEEcCCCcccccchhHhhhccCCCC
Q 039018 37 ISSGLGNLTSLKH-SISYNVLEGK-----------------LPTSFG--RLREPRSISLSWANKSQEILEIFHSFSRDNW 96 (181)
Q Consensus 37 l~~~l~~l~~L~~-~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 96 (181)
+|..++++++|++ ++++|.+++. +|+.++ .+++|++|++++|.+.+.+|..+ +
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-------~ 270 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-------K 270 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-------T
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-------h
Confidence 8889999999999 9999999975 899999 99999999999999998999888 9
Q ss_pred CCCCccEEEccccc-cee-ecCchhhcc------ccccc-ccccc------------cCCcccEEEccCCccccCCChhH
Q 039018 97 TLRSLQILDIACNN-LSG-AIPACISNS------SARKE-VGYTS------------ILNLLRITDRSKNNFSGVLPAEL 155 (181)
Q Consensus 97 ~~~~L~~L~l~~n~-i~~-~~p~~~~~~------~~l~~-~~~~n------------~l~~L~~l~l~~n~~~~~~p~~~ 155 (181)
++++|+.|++++|+ +++ .+|..++.+ ++|++ .+.+| .+++|++|++++|.++|.+| .+
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 99999999999998 988 889888775 55444 22222 23344555555555554444 33
Q ss_pred HHhcccCCEeEecCCcccccCCCC
Q 039018 156 VTDLVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 156 ~~~l~~L~~L~L~~n~l~~~~p~~ 179 (181)
+.+++|+.|++++|.++ .+|.+
T Consensus 350 -~~l~~L~~L~L~~N~l~-~lp~~ 371 (636)
T 4eco_A 350 -GSEIKLASLNLAYNQIT-EIPAN 371 (636)
T ss_dssp -EEEEEESEEECCSSEEE-ECCTT
T ss_pred -CCCCCCCEEECCCCccc-cccHh
Confidence 44555555555555554 44443
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=7.9e-20 Score=136.67 Aligned_cols=163 Identities=20% Similarity=0.189 Sum_probs=103.7
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-cccccc-ccCCCCcccCC
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNV-LEGKLPTSFGR 66 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~-~~~~~~~~~~~ 66 (181)
+|..+ .++|+.|++++|.+++..++.+.. +....+..+.++++|+. ++++|. +....+..+..
T Consensus 26 ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 45544 468999999999998544444432 22223455566666666 666665 55334555666
Q ss_pred CCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cC
Q 039018 67 LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------IL 134 (181)
Q Consensus 67 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l 134 (181)
+++|++|++++|.+.+..+..+ ..+++|+.|++++|++++..+..+..+++|++ .+.+| .+
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 176 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLF-------RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CcCCCEEECCCCcCCEECHhHh-------hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence 6666666666666665555555 66777777777777776444445666777666 44444 45
Q ss_pred CcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018 135 NLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 135 ~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~ 174 (181)
++|++|++++|.+++..|..+ ..+++|+.|++++|.+++
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSC
T ss_pred cccCEEECCCCcccccCHhHc-cCcccccEeeCCCCcCCc
Confidence 567777777777775556555 677777777777777764
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=131.17 Aligned_cols=142 Identities=21% Similarity=0.241 Sum_probs=115.8
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
||..+. ..++.|++++|.+++..|. ..+..+++|+. ++++|.+++..+..+..+++|++|++++|.+
T Consensus 26 iP~~~~--~~~~~L~L~~N~l~~~~~~----------~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 26 IPEHIP--QYTAELRLNNNEFTVLEAT----------GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECCC----------CCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CccCCC--CCCCEEEcCCCcCCccCch----------hhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 455443 3567888888888743332 34678889999 9999999977777899999999999999999
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV 160 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~ 160 (181)
.+..+..+ ..+++|++|++++|++++..|..+..+ ++|++|++++|++++..|..+ ..++
T Consensus 94 ~~~~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------~~L~~L~L~~N~l~~~~~~~~-~~l~ 153 (220)
T 2v70_A 94 ENVQHKMF-------KGLESLKTLMLRSNRITCVGNDSFIGL------------SSVRLLSLYDNQITTVAPGAF-DTLH 153 (220)
T ss_dssp CCCCGGGG-------TTCSSCCEEECTTSCCCCBCTTSSTTC------------TTCSEEECTTSCCCCBCTTTT-TTCT
T ss_pred CccCHhHh-------cCCcCCCEEECCCCcCCeECHhHcCCC------------ccCCEEECCCCcCCEECHHHh-cCCC
Confidence 87777778 889999999999999987777778774 459999999999996667777 9999
Q ss_pred cCCEeEecCCccccc
Q 039018 161 ALRSLNLFHNHFKEK 175 (181)
Q Consensus 161 ~L~~L~L~~n~l~~~ 175 (181)
+|+.|++++|.+.+.
T Consensus 154 ~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 154 SLSTLNLLANPFNCN 168 (220)
T ss_dssp TCCEEECCSCCEECS
T ss_pred CCCEEEecCcCCcCC
Confidence 999999999998754
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=3.5e-20 Score=139.85 Aligned_cols=171 Identities=23% Similarity=0.223 Sum_probs=112.0
Q ss_pred CCCC-CCCCcCCCeeeccCcccccc--cCccccc------------cccccCCcccccccchh-ccccccccCCCC-ccc
Q 039018 2 IPNG-PENLSSLRYLDLSDNQFNST--IPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLP-TSF 64 (181)
Q Consensus 2 lp~~-~~~l~~L~~L~ls~n~i~~~--~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~-~~~ 64 (181)
+|.. +.++++|+.|++++|.+... .|..+.. ....+|..+..+++|+. ++++|.+.+..+ ..+
T Consensus 43 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 122 (306)
T 2z66_A 43 LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122 (306)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTT
T ss_pred cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhh
Confidence 4544 57888888888888887622 1222221 11235555667777777 777777774433 457
Q ss_pred CCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEccccccee-ecCchhhccccccc-ccccc----------
Q 039018 65 GRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSG-AIPACISNSSARKE-VGYTS---------- 132 (181)
Q Consensus 65 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~p~~~~~~~~l~~-~~~~n---------- 132 (181)
..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+++ ..|..+..+++|++ .+.+|
T Consensus 123 ~~l~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 195 (306)
T 2z66_A 123 LSLRNLIYLDISHTHTRVAFNGIF-------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195 (306)
T ss_dssp TTCTTCCEEECTTSCCEECSTTTT-------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred hhccCCCEEECCCCcCCccchhhc-------ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh
Confidence 777788888888777766666666 666777777777777664 45666666666666 44444
Q ss_pred -cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018 133 -ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 133 -~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
.+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..|..+
T Consensus 196 ~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp TTCTTCCEEECTTSCCSBCCSGGG-TTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cCCCCCCEEECCCCccCccChhhc-cCcccCCEeECCCCCCcccCHHHH
Confidence 45667778888777774433344 777777888888877776666544
No 16
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=4.1e-19 Score=131.98 Aligned_cols=124 Identities=20% Similarity=0.234 Sum_probs=63.1
Q ss_pred cccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhh
Q 039018 42 GNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS 120 (181)
Q Consensus 42 ~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~ 120 (181)
.++++|++ ++++|.+....+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+++..+..+.
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF-------DSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh-------CcCcCCCEEECCCCcCCccCHhHcc
Confidence 44555555 555555554333444555555555555555554444444 5566666666666666533333355
Q ss_pred ccccccc-ccccc-----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 121 NSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 121 ~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
.+++|++ .+.+| .+++|++|++++|.++ .+|...+..+++|+.|++++|.+.
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence 5555554 33333 2344555555555555 233322245555555555555544
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=1.9e-19 Score=142.45 Aligned_cols=77 Identities=19% Similarity=0.146 Sum_probs=39.6
Q ss_pred CCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccccCCChhHHHhcccCC
Q 039018 96 WTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPAELVTDLVALR 163 (181)
Q Consensus 96 ~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~ 163 (181)
..+++|+.|++++|.+++..|..+..+++|++ .+.+| .+++|++|++++|++++..|..+ ..+++|+
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~ 374 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF-LGLPNLK 374 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT-TTCTTCC
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc-ccccccc
Confidence 34455555555555555444445555555555 33333 34455555555555554444444 5555555
Q ss_pred EeEecCCccc
Q 039018 164 SLNLFHNHFK 173 (181)
Q Consensus 164 ~L~L~~n~l~ 173 (181)
+|++++|.++
T Consensus 375 ~L~L~~N~l~ 384 (455)
T 3v47_A 375 ELALDTNQLK 384 (455)
T ss_dssp EEECCSSCCS
T ss_pred EEECCCCccc
Confidence 5555555555
No 18
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.9e-19 Score=132.76 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=127.5
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+. +.++.|++++|.+.+ ++. ..+.++++|+. ++++|.+....+..+..+++|++|++++|.+
T Consensus 31 ip~~~~--~~l~~L~l~~n~l~~-~~~----------~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 31 IPSNIP--ADTKKLDLQSNKLSS-LPS----------KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp CCSCCC--TTCSEEECCSSCCSC-CCT----------TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred cCCCCC--CCCCEEECcCCCCCe-eCH----------HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 565553 679999999999983 332 45788999999 9999999955555568899999999999999
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFS 148 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~ 148 (181)
....+..+ ..+.+|+.|++++|.+++..+..+..+++|++ .+.+| .+++|+.|++++|.++
T Consensus 98 ~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 98 QALPIGVF-------DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCCCTTTT-------TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCHhHc-------ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 87666677 88999999999999999666677899999999 56555 5788999999999999
Q ss_pred cCCChhHHHhcccCCEeEecCCcccccCCC
Q 039018 149 GVLPAELVTDLVALRSLNLFHNHFKEKFPG 178 (181)
Q Consensus 149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~ 178 (181)
+ ++...|..+++|+.|++++|.+++ +|.
T Consensus 171 ~-~~~~~~~~l~~L~~L~L~~N~l~~-~~~ 198 (270)
T 2o6q_A 171 R-VPEGAFDKLTELKTLKLDNNQLKR-VPE 198 (270)
T ss_dssp C-CCTTTTTTCTTCCEEECCSSCCSC-CCT
T ss_pred E-eChhHhccCCCcCEEECCCCcCCc-CCH
Confidence 4 554433899999999999999994 544
No 19
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=2.8e-19 Score=133.12 Aligned_cols=165 Identities=16% Similarity=0.156 Sum_probs=111.4
Q ss_pred CCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCC
Q 039018 5 GPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREP 70 (181)
Q Consensus 5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L 70 (181)
.+.++++|+.|++++|.+.+..+..+.. +....+..+.++++|+. ++++|.+.+..+..+..+++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 5666677777777777766433333332 22223345666677777 777777765555456777777
Q ss_pred cEEEcCCCccccc-chhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccc----c-ccccc----------cC
Q 039018 71 RSISLSWANKSQE-ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK----E-VGYTS----------IL 134 (181)
Q Consensus 71 ~~L~l~~n~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~----~-~~~~n----------~l 134 (181)
++|++++|.+... +|..+ ..+++|+.|++++|++++..+..+..+..++ + .+.+| ..
T Consensus 127 ~~L~l~~n~l~~~~l~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~ 199 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYF-------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199 (276)
T ss_dssp CEEECCSSCCCCCCCCGGG-------GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS
T ss_pred CEEECcCCccceecCchhh-------ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC
Confidence 7777777776642 46666 7778888888888888765556666666655 3 33333 23
Q ss_pred CcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018 135 NLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 135 ~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 177 (181)
.+|+.|++++|.++ .+|..++..+++|+.|++++|.+++..|
T Consensus 200 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 200 IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccCC
Confidence 36899999999998 5565555889999999999999987665
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1.9e-19 Score=130.09 Aligned_cols=140 Identities=21% Similarity=0.292 Sum_probs=112.6
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
||..+. +.|+.|++++|.|.+ ++. ..+..+++|+. ++++|.+.+..|..+..+++|++|++++|.+
T Consensus 26 iP~~l~--~~l~~L~l~~n~i~~-i~~----------~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 26 IPTNLP--ETITEIRLEQNTIKV-IPP----------GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp CCSSCC--TTCCEEECCSSCCCE-ECT----------TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CCCccC--cCCCEEECCCCcCCC-cCH----------hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 565553 678889999998883 332 35678888999 9999999877788899999999999999998
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV 160 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~ 160 (181)
....+..| ..+.+|+.|++++|++++..|..+..+ ++|++|++++|.+++..+..+ ..++
T Consensus 93 ~~l~~~~f-------~~l~~L~~L~L~~N~l~~~~~~~~~~l------------~~L~~L~L~~N~l~~~~~~~~-~~l~ 152 (220)
T 2v9t_B 93 TELPKSLF-------EGLFSLQLLLLNANKINCLRVDAFQDL------------HNLNLLSLYDNKLQTIAKGTF-SPLR 152 (220)
T ss_dssp CCCCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTTC------------TTCCEEECCSSCCSCCCTTTT-TTCT
T ss_pred CccCHhHc-------cCCCCCCEEECCCCCCCEeCHHHcCCC------------CCCCEEECCCCcCCEECHHHH-hCCC
Confidence 86555566 788999999999999987667777774 459999999999995444445 8899
Q ss_pred cCCEeEecCCcccc
Q 039018 161 ALRSLNLFHNHFKE 174 (181)
Q Consensus 161 ~L~~L~L~~n~l~~ 174 (181)
+|+.|+|++|.+..
T Consensus 153 ~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 153 AIQTMHLAQNPFIC 166 (220)
T ss_dssp TCCEEECCSSCEEC
T ss_pred CCCEEEeCCCCcCC
Confidence 99999999998864
No 21
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=4.3e-19 Score=129.00 Aligned_cols=141 Identities=23% Similarity=0.295 Sum_probs=116.5
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+. ++|+.|++++|.+.+..| ..+..+++|+. ++++|.+....+..+..+++|++|++++|.+
T Consensus 34 ip~~~~--~~L~~L~Ls~n~i~~~~~-----------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 34 VPAGIP--TNAQILYLHDNQITKLEP-----------GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp CCSCCC--TTCSEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCC--CCCCEEEcCCCccCccCH-----------HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 566553 789999999999985334 45678899999 9999999855556678999999999999999
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV 160 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~ 160 (181)
.+..+..+ ..+.+|+.|++++|+++ .+|..+..+ ++|++|++++|+++ .++...+..++
T Consensus 101 ~~l~~~~~-------~~l~~L~~L~Ls~N~l~-~lp~~~~~l------------~~L~~L~L~~N~l~-~~~~~~~~~l~ 159 (229)
T 3e6j_A 101 TVLPSAVF-------DRLVHLKELFMCCNKLT-ELPRGIERL------------THLTHLALDQNQLK-SIPHGAFDRLS 159 (229)
T ss_dssp CCCCTTTT-------TTCTTCCEEECCSSCCC-SCCTTGGGC------------TTCSEEECCSSCCC-CCCTTTTTTCT
T ss_pred CccChhHh-------CcchhhCeEeccCCccc-ccCcccccC------------CCCCEEECCCCcCC-ccCHHHHhCCC
Confidence 87666667 88999999999999998 888888774 45999999999999 55544448999
Q ss_pred cCCEeEecCCcccccC
Q 039018 161 ALRSLNLFHNHFKEKF 176 (181)
Q Consensus 161 ~L~~L~L~~n~l~~~~ 176 (181)
+|+.|++++|.+.+..
T Consensus 160 ~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 160 SLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TCCEEECTTSCBCTTB
T ss_pred CCCEEEeeCCCccCCc
Confidence 9999999999988654
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=9.7e-20 Score=137.42 Aligned_cols=129 Identities=24% Similarity=0.221 Sum_probs=106.0
Q ss_pred Ccccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc-cchhHhhhccCCCCCCCCccEEEcccccceeecC
Q 039018 39 SGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ-EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP 116 (181)
Q Consensus 39 ~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p 116 (181)
..+..+++|+. ++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+ ..+++|+.|++++|.+++..|
T Consensus 120 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~ 192 (306)
T 2z66_A 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-------TELRNLTFLDLSQCQLEQLSP 192 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC-------TTCTTCCEEECTTSCCCEECT
T ss_pred hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH-------hhCcCCCEEECCCCCcCCcCH
Confidence 35777888888 888888887777778888899999998888765 456666 788888899998888887667
Q ss_pred chhhccccccc-ccccc-----------cCCcccEEEccCCccccCCChhHHHhcc-cCCEeEecCCccccc
Q 039018 117 ACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPAELVTDLV-ALRSLNLFHNHFKEK 175 (181)
Q Consensus 117 ~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~-~L~~L~L~~n~l~~~ 175 (181)
..+..+++|++ .+.+| .+++|++|++++|.+++..|..+ ..++ +|+.|++++|.+++.
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL-QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC-CCCCTTCCEEECTTCCEECS
T ss_pred HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH-HhhhccCCEEEccCCCeecc
Confidence 88888888888 55555 46789999999999998777777 7774 899999999999864
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=3.5e-19 Score=133.84 Aligned_cols=154 Identities=22% Similarity=0.207 Sum_probs=81.6
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+. +.++.|++++|.+.+..+.. +..+++|+. ++++|.+++. +. .+.+++|++|++++|.+
T Consensus 25 ip~~~~--~~l~~L~L~~N~l~~~~~~~-----------~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 25 LPPDLP--KDTTILHLSENLLYTFSLAT-----------LMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQL 89 (290)
T ss_dssp CCSCCC--TTCCEEECTTSCCSEEEGGG-----------GTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCC
T ss_pred CCCCCC--CCCCEEEcCCCcCCccCHHH-----------hhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcC
Confidence 555553 57788888888887444433 334444444 4444444421 11 13444444444444444
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFS 148 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~ 148 (181)
. .+|..+ ..+++|+.|++++|++++..|..+..+++|++ .+.+| .+++|+.|++++|+++
T Consensus 90 ~-~l~~~~-------~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 90 Q-SLPLLG-------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp S-SCCCCT-------TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred C-cCchhh-------ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 3 223333 34444444444444444222233444444444 22222 2455777888888777
Q ss_pred cCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018 149 GVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
.+|..+|..+++|+.|+|++|.++ .+|..+
T Consensus 162 -~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 162 -ELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191 (290)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred -ccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence 555554477778888888888877 666654
No 24
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=2.6e-20 Score=141.15 Aligned_cols=120 Identities=16% Similarity=0.078 Sum_probs=72.0
Q ss_pred ccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc--hhHhhhccCCCCCCCCccEEEccccccee--ecC-ch
Q 039018 45 TSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI--LEIFHSFSRDNWTLRSLQILDIACNNLSG--AIP-AC 118 (181)
Q Consensus 45 ~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~p-~~ 118 (181)
++|++ ++++|.+.+..+..++.+++|++|++++|.+.+.. +..+ .+..+++|+.|++++|++++ .++ ..
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL-----CPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS-----CTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH-----HhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 67777 77777777666677777777777777777765432 2221 01466777777777777762 122 22
Q ss_pred hhccccccc-ccccc------------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 119 ISNSSARKE-VGYTS------------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 119 ~~~~~~l~~-~~~~n------------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
+..+++|++ .+.+| .+++|++|++++|.++ .+|..+ . ++|+.|+|++|.++
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~-~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-P--AKLSVLDLSYNRLD 287 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC-C--SEEEEEECCSSCCC
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc-c--CCceEEECCCCCCC
Confidence 335555555 33333 2345666666666666 556554 2 56666666666666
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.1e-18 Score=138.37 Aligned_cols=156 Identities=21% Similarity=0.158 Sum_probs=79.2
Q ss_pred CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018 4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ 82 (181)
Q Consensus 4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 82 (181)
..+.++++|+.|++++|.+.+. .+..+.++++|+. ++++|.+....+..+..+++|++|++++|.+..
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQI-----------EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEE-----------CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred HHcCCCCCCCEEECCCCccCCc-----------ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 3344444444444444444422 2244556666666 666666664444456666666666666666654
Q ss_pred cchhHhhhc-----------------c-CCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------
Q 039018 83 EILEIFHSF-----------------S-RDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------- 132 (181)
Q Consensus 83 ~~~~~~~~~-----------------~-~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------- 132 (181)
..+..+..+ + ..+..+.+|+.|++++|.++ .+| .+..+++|++ .+.+|
T Consensus 162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 239 (452)
T 3zyi_A 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFH 239 (452)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCccccc
Confidence 333333100 0 01234444555555555444 222 2344444444 33333
Q ss_pred cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 133 ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 133 ~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
.+++|+.|++++|++++..+..+ ..+++|+.|+|++|.++
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLS 279 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCS
T ss_pred CccCCCEEEeCCCcCceECHHHh-cCCCCCCEEECCCCcCC
Confidence 34555666666666654444444 66666666666666666
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=1.5e-19 Score=134.48 Aligned_cols=151 Identities=22% Similarity=0.221 Sum_probs=112.9
Q ss_pred CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccccc
Q 039018 5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQE 83 (181)
Q Consensus 5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 83 (181)
.+.++++|++|++++|.+++..+ ..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 148 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPN-----------GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCT-----------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred hhcCCCCCCEEECCCCccCccCh-----------hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc
Confidence 56788899999999999883333 23566777777 7888887755555577788888888888877755
Q ss_pred chhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccccCC
Q 039018 84 ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVL 151 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~ 151 (181)
.+..+ ..+++|+.|++++|++++..+..+..+++|++ .+.+| .+++|+++++++|.+.+.
T Consensus 149 ~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~- 220 (272)
T 3rfs_A 149 PKGVF-------DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT- 220 (272)
T ss_dssp CTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-
T ss_pred CHHHh-------ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-
Confidence 55556 67777888888888777555555677777777 45444 467799999999988743
Q ss_pred ChhHHHhcccCCEeEecCCcccccCCCCCC
Q 039018 152 PAELVTDLVALRSLNLFHNHFKEKFPGSIH 181 (181)
Q Consensus 152 p~~~~~~l~~L~~L~L~~n~l~~~~p~~i~ 181 (181)
++.|+.+++..|.++|.+|.+++
T Consensus 221 -------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 221 -------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp -------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred -------CcHHHHHHHHHHhCCCcccCccc
Confidence 55677888999999999998875
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.79 E-value=1.1e-19 Score=148.49 Aligned_cols=112 Identities=18% Similarity=0.185 Sum_probs=51.4
Q ss_pred cccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc-cchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018 42 GNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ-EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119 (181)
Q Consensus 42 ~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~ 119 (181)
..+++|+. ++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+ ..+++|+.|++++|++++..|..+
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF-------ANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC-------TTCTTCCEEECTTSCCCEECTTTT
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh-------ccCCCCCEEECCCCcCCccChhhh
Confidence 33444444 444444443344444444444444444444433 123333 445555555555555554444445
Q ss_pred hcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 120 ~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
..+++ |++|++++|++++..|..+ ..+++|+.|++++|+++
T Consensus 494 ~~l~~------------L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 494 DTLHR------------LQLLNMSHNNLLFLDSSHY-NQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTCTT------------CCEEECCSSCCSCEEGGGT-TTCTTCCEEECTTSCCC
T ss_pred ccccc------------CCEEECCCCcCCCcCHHHc-cCCCcCCEEECCCCcCc
Confidence 55444 4445555554443334333 44444555555555444
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.79 E-value=1.3e-18 Score=142.25 Aligned_cols=176 Identities=22% Similarity=0.216 Sum_probs=82.8
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCC-cccccccchh-ccccccccCCC--Cccc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISS-GLGNLTSLKH-SISYNVLEGKL--PTSF 64 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~-~l~~l~~L~~-~l~~n~~~~~~--~~~~ 64 (181)
+|..+.++++|+.|++++|.+.+..|..+.. +.+.++. .+..+++|+. ++++|.+.+.. +..+
T Consensus 293 lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 372 (606)
T 3t6q_A 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372 (606)
T ss_dssp CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence 4555555566666666666655433433322 1112222 2444555555 55555554332 3445
Q ss_pred CCCCCCcEEEcCCCcccccchhHhhhcc------------------CCCCCCCCccEEEcccccceeecCchhhcccccc
Q 039018 65 GRLREPRSISLSWANKSQEILEIFHSFS------------------RDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126 (181)
Q Consensus 65 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~------------------~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~ 126 (181)
..+++|++|++++|.+.+..+..+..++ ..+..+++|+.|++++|.+++..|..+..+++|+
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 452 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC
Confidence 5555555555555555444444431100 0013344444444444444433444444445544
Q ss_pred c-ccccc--------------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCC
Q 039018 127 E-VGYTS--------------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPG 178 (181)
Q Consensus 127 ~-~~~~n--------------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~ 178 (181)
+ .+.+| .+++|++|++++|.+++..|..+ ..+++|+.|+|++|.+++..|.
T Consensus 453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCGGGGG
T ss_pred EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh-ccccCCCEEECCCCccCcCChh
Confidence 4 23322 23445555555555554444444 5555666666666665554443
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=8.7e-20 Score=154.49 Aligned_cols=133 Identities=20% Similarity=0.238 Sum_probs=102.3
Q ss_pred cCCcccccccchh-ccccccccC-----------------CCCcccC--CCCCCcEEEcCCCcccccchhHhhhccCCCC
Q 039018 37 ISSGLGNLTSLKH-SISYNVLEG-----------------KLPTSFG--RLREPRSISLSWANKSQEILEIFHSFSRDNW 96 (181)
Q Consensus 37 l~~~l~~l~~L~~-~l~~n~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 96 (181)
+|..++++++|+. ++++|.+++ .+|+.++ .+++|++|++++|.+.+.+|..+ .
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-------~ 512 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-------Y 512 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-------G
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-------h
Confidence 8888999999999 999999997 3888888 99999999999999988999888 8
Q ss_pred CCCCccEEEccccc-cee-ecCchhhccc-------cccc-ccccc------------cCCcccEEEccCCccccCCChh
Q 039018 97 TLRSLQILDIACNN-LSG-AIPACISNSS-------ARKE-VGYTS------------ILNLLRITDRSKNNFSGVLPAE 154 (181)
Q Consensus 97 ~~~~L~~L~l~~n~-i~~-~~p~~~~~~~-------~l~~-~~~~n------------~l~~L~~l~l~~n~~~~~~p~~ 154 (181)
.+++|+.|++++|+ +++ .+|..++.+. +|++ .+.+| .+++|+.|++++|.++ .+| .
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 99999999999998 887 7888877765 6555 33333 3445666666666666 556 4
Q ss_pred HHHhcccCCEeEecCCcccccCCCCC
Q 039018 155 LVTDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 155 ~~~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
+ +.+++|+.|+|++|.++ .+|..+
T Consensus 591 ~-~~L~~L~~L~Ls~N~l~-~lp~~l 614 (876)
T 4ecn_A 591 F-GTNVKLTDLKLDYNQIE-EIPEDF 614 (876)
T ss_dssp C-CTTSEESEEECCSSCCS-CCCTTS
T ss_pred h-cCCCcceEEECcCCccc-cchHHH
Confidence 4 66666666666666666 566544
No 30
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=2.3e-18 Score=123.15 Aligned_cols=143 Identities=22% Similarity=0.306 Sum_probs=108.7
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+ .++|+.|++++|.+. .++. ..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+
T Consensus 22 ~p~~~--~~~l~~L~l~~n~l~-~~~~----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 22 VPTGI--PAQTTYLDLETNSLK-SLPN----------GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp CCSCC--CTTCSEEECCSSCCC-CCCT----------TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCC--CCCCcEEEcCCCccC-cCCh----------hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 45444 458999999999998 3332 34678889999 9999999865556678899999999999998
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV 160 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~ 160 (181)
.+..+..+ ..+++|+.|++++|++++..+..+..++ +|++|++++|.++ .++...+..++
T Consensus 89 ~~~~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~------------~L~~L~l~~N~l~-~~~~~~~~~l~ 148 (208)
T 2o6s_A 89 QSLPNGVF-------DKLTQLKELALNTNQLQSLPDGVFDKLT------------QLKDLRLYQNQLK-SVPDGVFDRLT 148 (208)
T ss_dssp CCCCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTTCT------------TCCEEECCSSCCS-CCCTTTTTTCT
T ss_pred CccCHhHh-------cCccCCCEEEcCCCcCcccCHhHhccCC------------cCCEEECCCCccc-eeCHHHhccCC
Confidence 86666667 7889999999999999854445566644 4888888888888 44444337788
Q ss_pred cCCEeEecCCcccccCC
Q 039018 161 ALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 161 ~L~~L~L~~n~l~~~~p 177 (181)
+|+.|++++|.+.+..|
T Consensus 149 ~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 149 SLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp TCCEEECCSCCBCCCTT
T ss_pred CccEEEecCCCeecCCC
Confidence 88888888887766554
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=137.23 Aligned_cols=157 Identities=21% Similarity=0.160 Sum_probs=84.1
Q ss_pred CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018 4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ 82 (181)
Q Consensus 4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 82 (181)
..+.++++|+.|++++|.+.+..+ ..+.++++|+. ++++|.+....+..+..+++|++|++++|.+..
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~-----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEI-----------GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECG-----------GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred HHhhCCCCCCEEECCCCcCCccCh-----------hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence 445556666666666666553222 34556666666 666666664444456666666666666666654
Q ss_pred cchhHhhhc-----------------c-CCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------
Q 039018 83 EILEIFHSF-----------------S-RDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------- 132 (181)
Q Consensus 83 ~~~~~~~~~-----------------~-~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------- 132 (181)
..+..+..+ + ..+..+.+|+.|++++|.++ .+|. +..+++|++ .+.+|
T Consensus 151 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~ 228 (440)
T 3zyj_A 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQ 228 (440)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTT
T ss_pred cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhc
Confidence 433333100 0 01144455555555555554 3332 444444444 33333
Q ss_pred cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018 133 ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 133 ~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~ 174 (181)
.+++|+.|++++|++++..+..+ ..+++|+.|+|++|.+++
T Consensus 229 ~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVIERNAF-DNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp TCTTCCEEECTTCCCCEECTTSS-TTCTTCCEEECTTSCCCC
T ss_pred cCccCCEEECCCCceeEEChhhh-cCCCCCCEEECCCCCCCc
Confidence 44556666666666664444444 666677777777777763
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=6.8e-19 Score=143.89 Aligned_cols=144 Identities=22% Similarity=0.207 Sum_probs=111.2
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
||..+. +.+++|||++|.|+ .+|. ..|.++++|++ ++++|.+.+..++.|.++++|++|++++|.+
T Consensus 46 vP~~lp--~~~~~LdLs~N~i~-~l~~----------~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 46 IPDNLP--FSTKNLDLSFNPLR-HLGS----------YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp CCSSSC--TTCCEEECTTSCCC-EECT----------TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cCCCCC--cCCCEEEeeCCCCC-CCCH----------HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 565552 47899999999998 3332 45788999999 9999999976677899999999999999999
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCcccc-CCChhHHHhc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSG-VLPAELVTDL 159 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~-~~p~~~~~~l 159 (181)
.+..+..| ..+.+|++|++++|++++..+..++.+++ |++|++++|.+++ .+|..+ +.+
T Consensus 113 ~~l~~~~f-------~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~------------L~~L~Ls~N~l~~~~~~~~~-~~l 172 (635)
T 4g8a_A 113 QSLALGAF-------SGLSSLQKLVAVETNLASLENFPIGHLKT------------LKELNVAHNLIQSFKLPEYF-SNL 172 (635)
T ss_dssp CEECGGGG-------TTCTTCCEEECTTSCCCCSTTCCCTTCTT------------CCEEECCSSCCCCCCCCGGG-GGC
T ss_pred CCCCHHHh-------cCCCCCCEEECCCCcCCCCChhhhhcCcc------------cCeeccccCccccCCCchhh-ccc
Confidence 87666778 89999999999999998554556777554 7777777777764 245555 777
Q ss_pred ccCCEeEecCCcccccCCC
Q 039018 160 VALRSLNLFHNHFKEKFPG 178 (181)
Q Consensus 160 ~~L~~L~L~~n~l~~~~p~ 178 (181)
++|+.|++++|.+++..|.
T Consensus 173 ~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 173 TNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp TTCCEEECCSSCCCEECGG
T ss_pred hhhhhhcccCccccccccc
Confidence 7777777777777654443
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=1.7e-18 Score=128.86 Aligned_cols=113 Identities=20% Similarity=0.199 Sum_probs=62.7
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+. ++|+.|++++|.+++..+. .+.++++|++ ++++|.+....+..+..+++|++|++++|.+
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~~~~-----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSY-----------SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEECTT-----------TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cCCCCC--CCccEEECCCCcccccCHh-----------HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 566553 5799999999999843332 3455555666 6666665544444555566666666666655
Q ss_pred cccchhHhhhcc-----------------CCCCCCCCccEEEccccccee-ecCchhhccccccc
Q 039018 81 SQEILEIFHSFS-----------------RDNWTLRSLQILDIACNNLSG-AIPACISNSSARKE 127 (181)
Q Consensus 81 ~~~~~~~~~~~~-----------------~~~~~~~~L~~L~l~~n~i~~-~~p~~~~~~~~l~~ 127 (181)
.+..+..+..+. ..+..+++|+.|++++|.+++ .+|..+..+++|++
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence 544444441000 011445555555555555543 23555555555444
No 34
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=2e-18 Score=122.57 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=73.8
Q ss_pred ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEccccc-ceeecCch
Q 039018 41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNN-LSGAIPAC 118 (181)
Q Consensus 41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~p~~ 118 (181)
+..+++|+. ++++|.+.+..+..++.+++|++|++++|.+....+..+ ..+++|+.|++++|. ++ .+| .
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l-------~~l~~L~~L~L~~n~~i~-~~~-~ 154 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI-------NTLPKVNSIDLSYNGAIT-DIM-P 154 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHH-------TTCSSCCEEECCSCTBCC-CCG-G
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHH-------hhCCCCCEEEccCCCCcc-ccH-h
Confidence 555666666 666666665556666666777777777766665556666 666677777777765 44 444 3
Q ss_pred hhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018 119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 119 ~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~ 174 (181)
+.. +++|++|++++|.++ .++ .+ ..+++|+.|++++|++.+
T Consensus 155 l~~------------l~~L~~L~l~~n~i~-~~~-~l-~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 155 LKT------------LPELKSLNIQFDGVH-DYR-GI-EDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGG------------CSSCCEEECTTBCCC-CCT-TG-GGCSSCCEEEECBC----
T ss_pred hcC------------CCCCCEEECCCCCCc-ChH-Hh-ccCCCCCEEEeeCcccCC
Confidence 444 455899999999998 455 55 889999999999998864
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=136.53 Aligned_cols=173 Identities=19% Similarity=0.094 Sum_probs=86.5
Q ss_pred CCCCCCcCCCeeeccCcccccccCccccc------------cccccC-Ccccccccchh-ccccccccCCCCcccCCCCC
Q 039018 4 NGPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTIS-SGLGNLTSLKH-SISYNVLEGKLPTSFGRLRE 69 (181)
Q Consensus 4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~-~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~ 69 (181)
..+.++++|+.|++++|.+.+..|..+.. ....+| ..+.++++|+. ++++|.+.+..+..+..+++
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 44555555555555555555444444332 001222 23455556666 66666655545555555555
Q ss_pred CcEEEcCCCcccccchhHhhhcc-----------------CCCCCCCCccEEEcccccceeecCchhhccccccc-cccc
Q 039018 70 PRSISLSWANKSQEILEIFHSFS-----------------RDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYT 131 (181)
Q Consensus 70 L~~L~l~~n~~~~~~~~~~~~~~-----------------~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~ 131 (181)
|+.|++++|.+.+..+..+..+. ..+..+++|+.|++++|.+++..+..+..+++|++ .+.+
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 55555555555444443330000 00044555555555555555444445555555555 2322
Q ss_pred c-----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018 132 S-----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 132 n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 177 (181)
| ...+|+.|++++|.++ .+|...+..+++|+.|+|++|.+++..+
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEG 265 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECT
T ss_pred CccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccCh
Confidence 2 1225666666666666 4554333666667777776666664333
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=2.1e-18 Score=131.40 Aligned_cols=168 Identities=15% Similarity=0.105 Sum_probs=95.6
Q ss_pred CCCCCcCCCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCc
Q 039018 5 GPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPR 71 (181)
Q Consensus 5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~ 71 (181)
.+.++++|++|++++|.+.+..|+.+.. ....+|..+. ++|+. ++++|.+.+..+..+..+++|+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence 4556666666666666666444544432 0112222222 34444 4555555433333455555555
Q ss_pred EEEcCCCcccc--cchhHhhhcc------------C--CCCCCCCccEEEcccccceeecCchhhccccccc-ccccc--
Q 039018 72 SISLSWANKSQ--EILEIFHSFS------------R--DNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-- 132 (181)
Q Consensus 72 ~L~l~~n~~~~--~~~~~~~~~~------------~--~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-- 132 (181)
+|++++|.+.. ..+..+..+. . .....++|+.|++++|.+++..|..+..+++|++ .+.+|
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 66655555432 2223331110 0 0011256667777777776555667777777776 44444
Q ss_pred ---------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccC
Q 039018 133 ---------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKF 176 (181)
Q Consensus 133 ---------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 176 (181)
.+++|++|++++|.++ .+|..+ ..+++|+.|++++|.+++..
T Consensus 229 ~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGL-ADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp CEECTTTGGGSTTCCEEECCSSCCS-SCCTTT-TTCSSCCEEECCSSCCCCCC
T ss_pred ceeChhhccCCCCCCEEECCCCcCc-cCChhh-ccCCCcCEEECCCCcCCccC
Confidence 4567888888888888 778777 88888888888888888433
No 37
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=3.4e-18 Score=125.68 Aligned_cols=149 Identities=15% Similarity=0.209 Sum_probs=122.4
Q ss_pred cCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHh
Q 039018 10 SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIF 88 (181)
Q Consensus 10 ~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 88 (181)
...+.++++++.++ .+|. .+. +.++. ++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~-----------~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 79 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPS-----------GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79 (251)
T ss_dssp GGGTEEECTTCCCS-SCCS-----------CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCCeEEecCCCCcc-ccCC-----------CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence 34678999999998 5554 332 46777 899999998888889999999999999999998777778
Q ss_pred hhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccccCCChhHH
Q 039018 89 HSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPAELV 156 (181)
Q Consensus 89 ~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~~~~ 156 (181)
..+++|+.|++++|.+++..+..+..+++|++ .+.+| .+++|++|++++|.+++..+..+
T Consensus 80 -------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~- 151 (251)
T 3m19_A 80 -------DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF- 151 (251)
T ss_dssp -------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-
T ss_pred -------ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc-
Confidence 89999999999999999666677889999998 56655 57889999999999994433355
Q ss_pred HhcccCCEeEecCCcccccCCCCC
Q 039018 157 TDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 157 ~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
..+++|+.|+|++|.+++..+..+
T Consensus 152 ~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CcCcCCCEEECCCCcCCccCHHHH
Confidence 899999999999999995544443
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=7e-19 Score=135.28 Aligned_cols=165 Identities=17% Similarity=0.194 Sum_probs=110.4
Q ss_pred CCCCCcCCCeeeccCcccccccCccccc------------cccccCCc-ccccccchh-ccccccccCCCCc--ccCCCC
Q 039018 5 GPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSG-LGNLTSLKH-SISYNVLEGKLPT--SFGRLR 68 (181)
Q Consensus 5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~-l~~l~~L~~-~l~~n~~~~~~~~--~~~~l~ 68 (181)
.+.++++|+.|++++|.+++..|..+.. ....++.. ++++++|++ ++++|.+. .+|. .+..++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~ 149 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLT 149 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCT
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCC
Confidence 5777788888888888777544544432 01123332 566777777 77777777 3443 566777
Q ss_pred CCcEEEcCCCc-ccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCC
Q 039018 69 EPRSISLSWAN-KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILN 135 (181)
Q Consensus 69 ~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~ 135 (181)
+|++|++++|. +....+..+ ..+++|+.|++++|.+++..|..+..+++|++ .+.+| .++
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 222 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDF-------AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTT-------TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT
T ss_pred CCcEEECCCCccccccCHHHc-------cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc
Confidence 77777777773 444445556 77888888888888888777888888888887 44444 356
Q ss_pred cccEEEccCCccccC-------------------------------CChhHHHhcccCCEeEecCCcccccCCCC
Q 039018 136 LLRITDRSKNNFSGV-------------------------------LPAELVTDLVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 136 ~L~~l~l~~n~~~~~-------------------------------~p~~~~~~l~~L~~L~L~~n~l~~~~p~~ 179 (181)
+|+.|++++|.+++. +|+.+ ..+++|+.|++++|.++ .+|..
T Consensus 223 ~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l-~~l~~L~~L~Ls~N~l~-~i~~~ 295 (353)
T 2z80_A 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL-NQISGLLELEFSRNQLK-SVPDG 295 (353)
T ss_dssp TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH-HTCTTCCEEECCSSCCC-CCCTT
T ss_pred cccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH-hcccCCCEEECCCCCCC-ccCHH
Confidence 677777777777642 23334 66777788888888777 66654
No 39
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=5.9e-19 Score=126.23 Aligned_cols=140 Identities=21% Similarity=0.208 Sum_probs=113.6
Q ss_pred CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018 4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ 82 (181)
Q Consensus 4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 82 (181)
..+.++++|+.|++++|.++ .+|. ..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~~~~----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 114 (208)
T 2o6s_A 46 GVFDELTSLTQLYLGGNKLQ-SLPN----------GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114 (208)
T ss_dssp TTTTTCTTCSEEECCSSCCC-CCCT----------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred hhhcccccCcEEECCCCccC-ccCh----------hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc
Confidence 34678999999999999998 3443 34678999999 999999996666668899999999999999987
Q ss_pred cchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccC
Q 039018 83 EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVAL 162 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L 162 (181)
..+..+ ..+++|+.|++++|++++..+..+..++ +|+++++++|.+.+ .++.|
T Consensus 115 ~~~~~~-------~~l~~L~~L~l~~N~l~~~~~~~~~~l~------------~L~~L~l~~N~~~~--------~~~~l 167 (208)
T 2o6s_A 115 LPDGVF-------DKLTQLKDLRLYQNQLKSVPDGVFDRLT------------SLQYIWLHDNPWDC--------TCPGI 167 (208)
T ss_dssp CCTTTT-------TTCTTCCEEECCSSCCSCCCTTTTTTCT------------TCCEEECCSCCBCC--------CTTTT
T ss_pred cCHhHh-------ccCCcCCEEECCCCccceeCHHHhccCC------------CccEEEecCCCeec--------CCCCH
Confidence 666667 8899999999999999854444566644 48889999987763 45567
Q ss_pred CEeEecCCcccccCCCCCC
Q 039018 163 RSLNLFHNHFKEKFPGSIH 181 (181)
Q Consensus 163 ~~L~L~~n~l~~~~p~~i~ 181 (181)
+.|+++.|.++|.+|.+++
T Consensus 168 ~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 168 RYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp HHHHHHHHHCTTTBBCTTS
T ss_pred HHHHHHHHhCCceeeccCc
Confidence 7888888899988888764
No 40
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.77 E-value=1.9e-18 Score=141.20 Aligned_cols=158 Identities=16% Similarity=0.099 Sum_probs=125.1
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+. +.++.|++++|.+++..| ..+.++++|++ ++++|.+.+..|..+..+++|++|++++|.+
T Consensus 27 iP~~l~--~~l~~L~Ls~n~i~~~~~-----------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 27 IPGTLP--NSTECLEFSFNVLPTIQN-----------TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp CCTTSC--TTCCEEECTTCCCSEECT-----------TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CcCCCC--CcCcEEEccCCccCcCCh-----------hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 566654 378899999999884333 45678888888 8888888877788888888888888888888
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFS 148 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~ 148 (181)
.+..|..+ ..+.+|++|++++|.+++..|..++.+++|++ .+.+| .+++|++|++++|.++
T Consensus 94 ~~~~~~~~-------~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 94 IFMAETAL-------SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp SEECTTTT-------SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred cccChhhh-------cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 87777777 88888888888888887555667788888888 55554 4567999999999999
Q ss_pred cCCChhHHHhcccCC--EeEecCCcccccCCCCC
Q 039018 149 GVLPAELVTDLVALR--SLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 149 ~~~p~~~~~~l~~L~--~L~L~~n~l~~~~p~~i 180 (181)
+..|..+ +.+++|+ .|++++|.+++..|..+
T Consensus 167 ~~~~~~~-~~l~~L~~l~L~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 167 YLSKEDM-SSLQQATNLSLNLNGNDIAGIEPGAF 199 (606)
T ss_dssp EECHHHH-HTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred ccChhhh-hhhcccceeEEecCCCccCccChhHh
Confidence 6556556 9999999 89999999997777654
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=1.6e-18 Score=141.68 Aligned_cols=140 Identities=21% Similarity=0.183 Sum_probs=83.3
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+. ++|+.|++++|.+++..+ ..+.++++|++ ++++|.+.+..|..+.++++|++|++++|.+
T Consensus 26 ip~~~~--~~l~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 26 VPDDIP--SSTKNIDLSFNPLKILKS-----------YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp CCTTSC--TTCCEEECTTSCCCEECT-----------TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCCCCC--CCcCEEECCCCCcCEeCh-----------hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 555543 677788888887773222 34566677777 7777777655566667777777777777776
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCcccc-CCChhHHHhc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSG-VLPAELVTDL 159 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~-~~p~~~~~~l 159 (181)
.+..|..+ ..+.+|++|++++|.+++..+..++.+++ |++|++++|.+.+ .+|..+ +.+
T Consensus 93 ~~~~p~~~-------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~------------L~~L~L~~n~l~~~~lp~~~-~~l 152 (606)
T 3vq2_A 93 QSFSPGSF-------SGLTSLENLVAVETKLASLESFPIGQLIT------------LKKLNVAHNFIHSCKLPAYF-SNL 152 (606)
T ss_dssp CCCCTTSS-------TTCTTCCEEECTTSCCCCSSSSCCTTCTT------------CCEEECCSSCCCCCCCCGGG-GTC
T ss_pred cccChhhc-------CCcccCCEEEccCCccccccccccCCCCC------------CCEEeCCCCcccceechHhH-hhc
Confidence 66556666 66777777777777766444455555444 4444444444442 234444 444
Q ss_pred ccCCEeEecCCcccc
Q 039018 160 VALRSLNLFHNHFKE 174 (181)
Q Consensus 160 ~~L~~L~L~~n~l~~ 174 (181)
++|+.|++++|.+++
T Consensus 153 ~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 153 TNLVHVDLSYNYIQT 167 (606)
T ss_dssp TTCCEEECCSSCCCE
T ss_pred CCCCEEEccCCccee
Confidence 444444444444443
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=9.4e-18 Score=137.33 Aligned_cols=171 Identities=17% Similarity=0.127 Sum_probs=125.3
Q ss_pred CCCCCCCcCCCeeeccCcccccccCccccc------------cccccCCc-ccccccchh-ccccccccCCCCcccCCCC
Q 039018 3 PNGPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSG-LGNLTSLKH-SISYNVLEGKLPTSFGRLR 68 (181)
Q Consensus 3 p~~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~-l~~l~~L~~-~l~~n~~~~~~~~~~~~l~ 68 (181)
|..+.++++|+.|++++|.+.+..|..+.. ....+|.. ++.+++|+. ++++|.+.+..|..++.++
T Consensus 92 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 171 (597)
T 3oja_B 92 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence 346777777777777777777555544433 11134443 577888888 8888888877777788888
Q ss_pred CCcEEEcCCCcccccchhHhhhc----------------------------------------------------cCCCC
Q 039018 69 EPRSISLSWANKSQEILEIFHSF----------------------------------------------------SRDNW 96 (181)
Q Consensus 69 ~L~~L~l~~n~~~~~~~~~~~~~----------------------------------------------------~~~~~ 96 (181)
+|++|++++|.+.+.....+..+ +..+.
T Consensus 172 ~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~ 251 (597)
T 3oja_B 172 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL 251 (597)
T ss_dssp TCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG
T ss_pred cCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc
Confidence 88888888887764322211110 01125
Q ss_pred CCCCccEEEcccccceeecCchhhccccccc-ccccc----------cCCcccEEEccCCccccCCChhHHHhcccCCEe
Q 039018 97 TLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSL 165 (181)
Q Consensus 97 ~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L 165 (181)
.+++|+.|++++|.+++..|..++.+++|++ .+.+| .+++|+.|++++|.++ .+|..+ ..+++|+.|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~-~~l~~L~~L 329 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENL 329 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCccc-ccCCCCCEE
Confidence 5678899999999998888889999999999 56666 4788999999999998 788887 899999999
Q ss_pred EecCCccccc
Q 039018 166 NLFHNHFKEK 175 (181)
Q Consensus 166 ~L~~n~l~~~ 175 (181)
+|++|.+++.
T Consensus 330 ~L~~N~l~~~ 339 (597)
T 3oja_B 330 YLDHNSIVTL 339 (597)
T ss_dssp ECCSSCCCCC
T ss_pred ECCCCCCCCc
Confidence 9999999843
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=6.2e-18 Score=128.81 Aligned_cols=159 Identities=17% Similarity=0.188 Sum_probs=85.5
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCC
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRL 67 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l 67 (181)
+|..+. +.++.|++++|.+++..+..+.. +....|..+.++++|+. ++++|.+. .+|..+.
T Consensus 46 lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-- 120 (330)
T 1xku_A 46 VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP-- 120 (330)
T ss_dssp CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--
T ss_pred cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--
Confidence 565553 68999999999999544433322 12222444444445554 55555444 3333322
Q ss_pred CCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEccccccee--ecCchhhccccccc-ccccc--------cCCc
Q 039018 68 REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSG--AIPACISNSSARKE-VGYTS--------ILNL 136 (181)
Q Consensus 68 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~p~~~~~~~~l~~-~~~~n--------~l~~ 136 (181)
++|++|++++|.+.+..+..+ ..+++|+.|++++|.++. ..+..+..+++|++ .+.+| ..++
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~ 193 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVF-------NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHH-------TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTT
T ss_pred ccccEEECCCCcccccCHhHh-------cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccccc
Confidence 445555555555554444555 677788888888887752 45566777777766 34333 1133
Q ss_pred ccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 137 LRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 137 L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
|++|++++|.+++..|..+ ..+++|+.|++++|.++
T Consensus 194 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSCCC
T ss_pred CCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCc
Confidence 4445555554443333333 44444444444444444
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=137.50 Aligned_cols=153 Identities=23% Similarity=0.280 Sum_probs=94.2
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+. +.++.|++++|.+++..|+ .+.++++|++ ++++|.+.+..|..+.++++|++|++++|.+
T Consensus 26 ip~~~~--~~l~~L~L~~n~l~~~~~~-----------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 26 VPEGIP--TETRLLDLGKNRIKTLNQD-----------EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECTT-----------TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCC--CCCcEEECCCCccceECHh-----------HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 666653 6899999999999954443 3555666666 6666666655566666666666666666666
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFS 148 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~ 148 (181)
....+..+ ..+++|+.|++++|.+++..|..+..+++|++ .+.+| .+++|+.|++++|.++
T Consensus 93 ~~~~~~~~-------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 93 KLIPLGVF-------TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CSCCTTSS-------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CccCcccc-------cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 54433444 55666666666666666555555666666665 33333 3455666666666666
Q ss_pred cCCChhHHHhcccCCEeEecCCccccc
Q 039018 149 GVLPAELVTDLVALRSLNLFHNHFKEK 175 (181)
Q Consensus 149 ~~~p~~~~~~l~~L~~L~L~~n~l~~~ 175 (181)
.++...+..+++|+.|++++|.+++.
T Consensus 166 -~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 166 -SIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp -SCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred -ccChhHhcccCCCcEEeCCCCcCcEe
Confidence 34443336666666666666666543
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=135.48 Aligned_cols=149 Identities=21% Similarity=0.215 Sum_probs=104.4
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+. +.++.|++++|++.+..+ ..+.++++|+. ++++|.+....+..+.++++|++|++++|.+
T Consensus 58 iP~~~~--~~l~~L~L~~n~i~~~~~-----------~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 58 VPDGIS--TNTRLLNLHENQIQIIKV-----------NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp CCSCCC--TTCSEEECCSCCCCEECT-----------TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCCCCC--CCCcEEEccCCcCCeeCH-----------HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 566654 678999999999984333 45788999999 9999999977778899999999999999999
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc------------cCCcccEEEccCCcc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS------------ILNLLRITDRSKNNF 147 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n------------~l~~L~~l~l~~n~~ 147 (181)
....+..+ ..+++|+.|++++|+++...+..+..+++|++ .+.++ .+++|++|++++|.+
T Consensus 125 ~~~~~~~~-------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 125 TTIPNGAF-------VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp SSCCTTTS-------CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred CeeCHhHh-------hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 86666667 78888999999998888555556667777766 33331 344455555555544
Q ss_pred ccCCChhHHHhcccCCEeEecCCccc
Q 039018 148 SGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 148 ~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
+ .+|. + ..+++|+.|+|++|.++
T Consensus 198 ~-~~~~-~-~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 198 R-EIPN-L-TPLIKLDELDLSGNHLS 220 (440)
T ss_dssp S-SCCC-C-TTCSSCCEEECTTSCCC
T ss_pred c-cccc-c-CCCcccCEEECCCCccC
Confidence 4 3332 2 34444444444444444
No 46
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=1.2e-17 Score=129.95 Aligned_cols=169 Identities=17% Similarity=0.133 Sum_probs=119.5
Q ss_pred CCCCCCcCCCeeeccCcccccccCccccc------------cccccCCc-ccccccchh-ccccccccCCCCcccCCCCC
Q 039018 4 NGPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSG-LGNLTSLKH-SISYNVLEGKLPTSFGRLRE 69 (181)
Q Consensus 4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~-l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~ 69 (181)
..+.++++|+.|++++|.+.+..|..+.. ....+|.. +.++++|++ ++++|.+.+..+..+..+++
T Consensus 87 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 166 (390)
T 3o6n_A 87 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred hhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence 35666777777777777776544444433 11134444 467778888 88888887666667778888
Q ss_pred CcEEEcCCCcccccchhHhhhc----------------------------------------------------cCCCCC
Q 039018 70 PRSISLSWANKSQEILEIFHSF----------------------------------------------------SRDNWT 97 (181)
Q Consensus 70 L~~L~l~~n~~~~~~~~~~~~~----------------------------------------------------~~~~~~ 97 (181)
|++|++++|.+.+.....+..+ ...+..
T Consensus 167 L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~ 246 (390)
T 3o6n_A 167 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN 246 (390)
T ss_dssp CCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGG
T ss_pred CCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcC
Confidence 8888888877654321111110 001245
Q ss_pred CCCccEEEcccccceeecCchhhccccccc-ccccc----------cCCcccEEEccCCccccCCChhHHHhcccCCEeE
Q 039018 98 LRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLN 166 (181)
Q Consensus 98 ~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~ 166 (181)
+++|+.|++++|.+++..|..+..+++|++ .+.+| .+++|++|++++|+++ .+|..+ ..+++|+.|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~L~ 324 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLY 324 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEE
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccc-cccCcCCEEE
Confidence 678888889999888777888889999988 55555 5788999999999998 778777 8899999999
Q ss_pred ecCCcccc
Q 039018 167 LFHNHFKE 174 (181)
Q Consensus 167 L~~n~l~~ 174 (181)
+++|.++.
T Consensus 325 L~~N~i~~ 332 (390)
T 3o6n_A 325 LDHNSIVT 332 (390)
T ss_dssp CCSSCCCC
T ss_pred CCCCccce
Confidence 99999983
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=2.3e-18 Score=136.50 Aligned_cols=158 Identities=18% Similarity=0.155 Sum_probs=115.5
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+. ++++.|++++|.|.+..| ..+.++++|+. ++++|.+.+..+..+..+++|++|++++|.+
T Consensus 69 iP~~~~--~~l~~L~L~~n~i~~~~~-----------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 69 VPQGIP--SNTRYLNLMENNIQMIQA-----------DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECT-----------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCC--CCccEEECcCCcCceECH-----------HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 565553 689999999999984333 55788999999 9999999988888999999999999999999
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-cccc-------------------------c--
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYT-------------------------S-- 132 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~-------------------------n-- 132 (181)
....+..+ ..+++|+.|++++|+++...+..+..+++|++ .+.+ |
T Consensus 136 ~~~~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 136 TVIPSGAF-------EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp SBCCTTTS-------SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CccChhhh-------cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 86666667 78888999999988887444445666666665 3322 1
Q ss_pred -------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018 133 -------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 133 -------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
.+++|+.|++++|.+++..|..+ ..+++|+.|++++|.+++..|..+
T Consensus 209 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 209 KDMPNLTPLVGLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNAF 262 (452)
T ss_dssp SSCCCCTTCTTCCEEECTTSCCSEECGGGG-TTCTTCCEEECTTSCCCEECTTTT
T ss_pred cccccccccccccEEECcCCcCcccCcccc-cCccCCCEEEeCCCcCceECHHHh
Confidence 33456666666666664445555 677777777777777775555443
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=3.1e-18 Score=135.50 Aligned_cols=138 Identities=19% Similarity=0.234 Sum_probs=116.3
Q ss_pred cCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHh
Q 039018 10 SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIF 88 (181)
Q Consensus 10 ~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 88 (181)
+.|+.|++++|.+.+..| ..++.+++|+. ++++|.+.+..|..+..+++|++|++++|.+.+..+..+
T Consensus 275 ~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLK-----------SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp SCCCEEECCSSCCCEECT-----------TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred cCceEEEecCccccccch-----------hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 578888888888875444 45678888988 999999987778888899999999999999887778888
Q ss_pred hhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEec
Q 039018 89 HSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLF 168 (181)
Q Consensus 89 ~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~ 168 (181)
..+++|+.|++++|++++..|..+..+ ++|++|++++|+++ .+|...+..+++|+.|+++
T Consensus 344 -------~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 344 -------ENLDKLEVLDLSYNHIRALGDQSFLGL------------PNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp -------TTCTTCCEEECCSSCCCEECTTTTTTC------------TTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECC
T ss_pred -------cCcccCCEEECCCCcccccChhhcccc------------ccccEEECCCCccc-cCCHhHhccCCcccEEEcc
Confidence 889999999999999987778888774 45999999999999 4565444899999999999
Q ss_pred CCcccccCCC
Q 039018 169 HNHFKEKFPG 178 (181)
Q Consensus 169 ~n~l~~~~p~ 178 (181)
+|+++++.|.
T Consensus 404 ~N~l~~~~~~ 413 (455)
T 3v47_A 404 TNPWDCSCPR 413 (455)
T ss_dssp SSCBCCCTTT
T ss_pred CCCcccCCCc
Confidence 9999998874
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=6.5e-18 Score=128.85 Aligned_cols=169 Identities=20% Similarity=0.131 Sum_probs=102.0
Q ss_pred CCCCCCCcCCCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCCCCC
Q 039018 3 PNGPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLRE 69 (181)
Q Consensus 3 p~~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~ 69 (181)
|..+.++++|+.|++++|.+++..|+.+.. ....+|..+. ++|++ ++++|.+....+..+..+++
T Consensus 71 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~ 148 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRN 148 (332)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSS
T ss_pred HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCcc
Confidence 345666777777777777776444544432 0112333332 45555 56666665433344666777
Q ss_pred CcEEEcCCCcccc--cchhHhhhc---------------cCCCCCCCCccEEEcccccceeecCchhhccccccc-cccc
Q 039018 70 PRSISLSWANKSQ--EILEIFHSF---------------SRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYT 131 (181)
Q Consensus 70 L~~L~l~~n~~~~--~~~~~~~~~---------------~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~ 131 (181)
|++|++++|.+.. ..+..+..+ +. .-..+|+.|++++|.+++..+..+..+++|++ .+.+
T Consensus 149 L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~--~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp CCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCS--SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS
T ss_pred CCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCc--cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 7777777766642 223322110 00 01145666677777776555566777777777 4544
Q ss_pred c-----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018 132 S-----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 132 n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 177 (181)
| .+++|++|++++|+++ .+|..+ ..+++|+.|++++|.+++..+
T Consensus 227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG-GGCTTCCEEECCSSCCCBCCT
T ss_pred CcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh-hcCccCCEEECCCCCCCccCh
Confidence 4 5667888888888888 788777 888888888888888884433
No 50
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=2.8e-18 Score=121.45 Aligned_cols=130 Identities=21% Similarity=0.221 Sum_probs=95.7
Q ss_pred CeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCc-ccCCCCCCcEEEcCCCcccccchhHhhh
Q 039018 13 RYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPT-SFGRLREPRSISLSWANKSQEILEIFHS 90 (181)
Q Consensus 13 ~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 90 (181)
+.+++++|+++ .+|+ .+.. .+++ ++++|.+.+..+. .+..+++|++|++++|.+.+..|..+
T Consensus 11 ~~l~~s~~~l~-~ip~-----------~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-- 74 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPR-----------DIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-- 74 (192)
T ss_dssp TEEECTTSCCS-SCCS-----------CCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--
T ss_pred CEEEcCCCCcC-cCcc-----------CCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc--
Confidence 67888888886 4554 2222 5666 7888888754443 37788888888888888887777777
Q ss_pred ccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCC
Q 039018 91 FSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170 (181)
Q Consensus 91 ~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n 170 (181)
..+.+|+.|++++|++++..+..+..+ ++|++|++++|++++..|..+ ..+++|+.|+|++|
T Consensus 75 -----~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 75 -----EGASHIQELQLGENKIKEISNKMFLGL------------HQLKTLNLYDNQISCVMPGSF-EHLNSLTSLNLASN 136 (192)
T ss_dssp -----TTCTTCCEEECCSCCCCEECSSSSTTC------------TTCCEEECCSSCCCEECTTSS-TTCTTCCEEECTTC
T ss_pred -----CCcccCCEEECCCCcCCccCHHHhcCC------------CCCCEEECCCCcCCeeCHHHh-hcCCCCCEEEeCCC
Confidence 788888888888888886666666663 448888888888886667666 78888888888888
Q ss_pred cccccC
Q 039018 171 HFKEKF 176 (181)
Q Consensus 171 ~l~~~~ 176 (181)
.+++..
T Consensus 137 ~l~c~c 142 (192)
T 1w8a_A 137 PFNCNC 142 (192)
T ss_dssp CBCCSG
T ss_pred CccCcC
Confidence 877654
No 51
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=5.8e-18 Score=130.73 Aligned_cols=139 Identities=25% Similarity=0.235 Sum_probs=97.5
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCccc-ccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLG-NLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN 79 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~-~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 79 (181)
+|..+. +.++.|++++|.|++..+ ..+. .+++|+. ++++|.+....+..+..+++|++|++++|.
T Consensus 33 iP~~~~--~~l~~L~Ls~N~l~~l~~-----------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 33 VPQSLP--SYTALLDLSHNNLSRLRA-----------EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp CCSSCC--TTCSEEECCSSCCCEECT-----------TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCccCC--CCCCEEECCCCCCCccCh-----------hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 555543 457888888888883222 2344 7788888 888888886666778888889999999888
Q ss_pred ccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHH---
Q 039018 80 KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELV--- 156 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~--- 156 (181)
+....+..| ..+.+|+.|++++|++++..|..+..+++ |++|++++|+++ .+|..+|
T Consensus 100 l~~~~~~~~-------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~------------L~~L~L~~N~l~-~l~~~~~~~~ 159 (361)
T 2xot_A 100 LHTLDEFLF-------SDLQALEVLLLYNNHIVVVDRNAFEDMAQ------------LQKLYLSQNQIS-RFPVELIKDG 159 (361)
T ss_dssp CCEECTTTT-------TTCTTCCEEECCSSCCCEECTTTTTTCTT------------CCEEECCSSCCC-SCCGGGTC--
T ss_pred CCcCCHHHh-------CCCcCCCEEECCCCcccEECHHHhCCccc------------CCEEECCCCcCC-eeCHHHhcCc
Confidence 876666667 78888899999988888666777777555 666666666665 4454443
Q ss_pred HhcccCCEeEecCCccc
Q 039018 157 TDLVALRSLNLFHNHFK 173 (181)
Q Consensus 157 ~~l~~L~~L~L~~n~l~ 173 (181)
..+++|+.|+|++|.++
T Consensus 160 ~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp --CTTCCEEECCSSCCC
T ss_pred ccCCcCCEEECCCCCCC
Confidence 34556666666666665
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=2e-18 Score=139.57 Aligned_cols=151 Identities=18% Similarity=0.140 Sum_probs=107.9
Q ss_pred CCCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc
Q 039018 1 PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN 79 (181)
Q Consensus 1 ~lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 79 (181)
+||..+. ++|++|++++|.+++..| ..+.++++|++ ++++|.+.+..|..++.+++|++|++++|.
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGH-----------GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECS-----------STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cccccCC--CCccEEECcCCccCccCh-----------hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 3677664 789999999999984333 45788999999 999999998777889999999999999999
Q ss_pred ccccchhHhhhccCCCCCCCCccEEEccccccee-ecCchhhccccccc-ccccc------------cCCcccEEEccCC
Q 039018 80 KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSG-AIPACISNSSARKE-VGYTS------------ILNLLRITDRSKN 145 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~p~~~~~~~~l~~-~~~~n------------~l~~L~~l~l~~n 145 (181)
+.+..+..+ +.+++|++|++++|.+++ ..|..++.+++|++ .+.+| .+++|++|++++|
T Consensus 86 l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 86 LSSLSSSWF-------GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp CCSCCHHHH-------TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred cCccCHHHh-------ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 988777888 899999999999999975 35667777666444 22222 2334444555555
Q ss_pred ccccCCChhHHHhcccCCEeEecCCcc
Q 039018 146 NFSGVLPAELVTDLVALRSLNLFHNHF 172 (181)
Q Consensus 146 ~~~~~~p~~~~~~l~~L~~L~L~~n~l 172 (181)
.+++..|..+ +.+++|+.|+++.|.+
T Consensus 159 ~l~~~~~~~l-~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 159 SLRNYQSQSL-KSIRDIHHLTLHLSES 184 (549)
T ss_dssp TCCEECTTTT-TTCSEEEEEEEECSBS
T ss_pred cccccChhhh-hccccCceEecccCcc
Confidence 4444444444 4444455555544443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=132.89 Aligned_cols=152 Identities=20% Similarity=0.189 Sum_probs=86.4
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+. ++|+.|++++|.+++ +|. ..+.++++|+. ++++|.+.+..+..+..+++|++|++++|.+
T Consensus 46 iP~~~~--~~L~~L~l~~n~i~~-~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 46 IPSGLT--EAVKSLDLSNNRITY-ISN----------SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp CCTTCC--TTCCEEECTTSCCCE-ECT----------TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cccccc--ccCcEEECCCCcCcc-cCH----------HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 666654 589999999999984 332 23556666666 6666666655555566666666666666666
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccce--------------------------eecCchhhccccccc-ccccc-
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLS--------------------------GAIPACISNSSARKE-VGYTS- 132 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~--------------------------~~~p~~~~~~~~l~~-~~~~n- 132 (181)
.+..+..+ ..+++|++|++++|+++ +..+..+..+++|++ .+.+|
T Consensus 113 ~~~~~~~~-------~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 113 SNLSSSWF-------KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp SSCCHHHH-------TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CcCCHhHh-------CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 54444445 44445555555554444 233334444444444 22222
Q ss_pred ----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018 133 ----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 133 ----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~ 174 (181)
.+++|++|++++|.+. .+|..++..+++|+.|++++|.+++
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTT
T ss_pred cCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccc
Confidence 3344555555555554 4444443456666666666666664
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=2.5e-18 Score=130.22 Aligned_cols=74 Identities=24% Similarity=0.179 Sum_probs=32.1
Q ss_pred CCCCccEEEcccccceeecC-chhhccccccc-ccccc--------cCCcccEEEccCCccccCCChhHHHhcccCCEeE
Q 039018 97 TLRSLQILDIACNNLSGAIP-ACISNSSARKE-VGYTS--------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLN 166 (181)
Q Consensus 97 ~~~~L~~L~l~~n~i~~~~p-~~~~~~~~l~~-~~~~n--------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~ 166 (181)
.+++|+.|++++|++++..| ..+..+++|++ .+.+| ..++|++|++++|+++ .+|. + ..+++|+.|+
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~-~~p~-~-~~l~~L~~L~ 302 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLD-RNPS-P-DELPQVGNLS 302 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCC-SCCC-T-TTSCEEEEEE
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCC-CChh-H-hhCCCCCEEe
Confidence 34445555555555443332 22333444444 33333 0124445555555554 2233 3 4455555555
Q ss_pred ecCCccc
Q 039018 167 LFHNHFK 173 (181)
Q Consensus 167 L~~n~l~ 173 (181)
+++|+++
T Consensus 303 L~~N~l~ 309 (312)
T 1wwl_A 303 LKGNPFL 309 (312)
T ss_dssp CTTCTTT
T ss_pred ccCCCCC
Confidence 5555544
No 55
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=6.5e-18 Score=116.90 Aligned_cols=138 Identities=19% Similarity=0.164 Sum_probs=115.0
Q ss_pred CCcCCCeeeccCcccc-cccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch
Q 039018 8 NLSSLRYLDLSDNQFN-STIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL 85 (181)
Q Consensus 8 ~l~~L~~L~ls~n~i~-~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 85 (181)
..++|+.|++++|.+. +.+| ..+..+++|+. ++++|.+.+. ..+..+++|++|++++|.+.+..|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~-----------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE-----------GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS-----------SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred CcccCCEEECCCCCCChhhHH-----------HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH
Confidence 3478999999999997 5444 44678899999 9999999854 778999999999999999987778
Q ss_pred hHhhhccCCCCCCCCccEEEcccccceeecC--chhhcccccccccccccCCcccEEEccCCccccCCCh---hHHHhcc
Q 039018 86 EIFHSFSRDNWTLRSLQILDIACNNLSGAIP--ACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA---ELVTDLV 160 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p--~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~---~~~~~l~ 160 (181)
..+ ..+++|+.|++++|.++ .+| ..+.. +++|++|++++|.++ .+|. ..+..++
T Consensus 89 ~~~-------~~l~~L~~L~Ls~N~l~-~~~~~~~l~~------------l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~ 147 (168)
T 2ell_A 89 MLA-------EKLPNLTHLNLSGNKLK-DISTLEPLKK------------LECLKSLDLFNCEVT-NLNDYRESVFKLLP 147 (168)
T ss_dssp HHH-------HHCTTCCEEECBSSSCC-SSGGGGGGSS------------CSCCCEEECCSSGGG-TSTTHHHHHHTTCS
T ss_pred HHH-------hhCCCCCEEeccCCccC-cchhHHHHhc------------CCCCCEEEeeCCcCc-chHHHHHHHHHhCc
Confidence 877 77999999999999998 444 55666 455999999999999 5554 3448999
Q ss_pred cCCEeEecCCcccccCCCCC
Q 039018 161 ALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 161 ~L~~L~L~~n~l~~~~p~~i 180 (181)
+|+.|++++|.+. ++|.+.
T Consensus 148 ~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 148 QLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp SCCEETTEETTSC-BCCSSS
T ss_pred cCcEecCCCCChh-hccccc
Confidence 9999999999998 777653
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=9.9e-18 Score=134.79 Aligned_cols=128 Identities=25% Similarity=0.333 Sum_probs=110.5
Q ss_pred cccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc--cchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018 42 GNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ--EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC 118 (181)
Q Consensus 42 ~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~ 118 (181)
..+++|+. ++++|.+.+..|..++.+++|++|++++|.+.+ ..|..+ ..+++|+.|++++|.+++.+|..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-------~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT-------TQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH-------TTCTTCCEEECCSSCCBCCGGGC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH-------hhCCCCCEEECCCCcCCcccccc
Confidence 57788889 999999998889999999999999999999986 566778 89999999999999998657764
Q ss_pred -hhccccccc-ccccccC---------CcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018 119 -ISNSSARKE-VGYTSIL---------NLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 119 -~~~~~~l~~-~~~~n~l---------~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~ 179 (181)
+..+++|++ .+.+|.+ ++|++|++++|+++ .+|..+ ..+++|+.|++++|.++ .+|..
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~-~~l~~L~~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQV-VKLEALQELNVASNQLK-SVPDG 462 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCC-CCCTT
T ss_pred hhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhh-hcCCCCCEEECCCCcCC-ccCHH
Confidence 778888888 6666633 68999999999999 899888 69999999999999999 67764
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=139.85 Aligned_cols=131 Identities=20% Similarity=0.234 Sum_probs=92.3
Q ss_pred cccccccchh-ccccccccCCCC-cccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccce-eecC
Q 039018 40 GLGNLTSLKH-SISYNVLEGKLP-TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS-GAIP 116 (181)
Q Consensus 40 ~l~~l~~L~~-~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~p 116 (181)
.+..+++|+. ++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.++ +.+|
T Consensus 391 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~p 463 (570)
T 2z63_A 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-------NGLSSLEVLKMAGNSFQENFLP 463 (570)
T ss_dssp EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT-------TTCTTCCEEECTTCEEGGGEEC
T ss_pred cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh-------hcCCcCcEEECcCCcCccccch
Confidence 3566667777 777777665444 346667777777777777666666666 66777777777777765 4566
Q ss_pred chhhccccccc-ccccc-----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCC
Q 039018 117 ACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPG 178 (181)
Q Consensus 117 ~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~ 178 (181)
..+..+++|++ .+.+| .+++|++|++++|++++..+..+ ..+++|+.|++++|.+++..|.
T Consensus 464 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF-DRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh-hcccCCcEEEecCCcccCCCcc
Confidence 66666666666 44444 45678999999999985555555 8899999999999999887764
No 58
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=4.9e-18 Score=123.87 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=106.5
Q ss_pred CCCCCcCCCeeeccCcc-cccccCccccccccccCCcccccccchh-cccc-ccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018 5 GPENLSSLRYLDLSDNQ-FNSTIPEWISRINCTISSGLGNLTSLKH-SISY-NVLEGKLPTSFGRLREPRSISLSWANKS 81 (181)
Q Consensus 5 ~~~~l~~L~~L~ls~n~-i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 81 (181)
.+.++++|+.|++++|. ++ .++. ..+.++++|++ ++++ |.+....+..+..+++|++|++++|.+.
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~-~i~~----------~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQ-QLES----------HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCC-EECT----------TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC
T ss_pred HccCCCCCcEEeCCCCCCcc-eeCH----------hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc
Confidence 45555666666666664 44 2221 34667777777 7877 7777555566777888888888887776
Q ss_pred ccchhHhhhccCCCCCCCCcc---EEEcccc-cceeecCchhhcccccc-c-ccccc----------cCCcccEEEccCC
Q 039018 82 QEILEIFHSFSRDNWTLRSLQ---ILDIACN-NLSGAIPACISNSSARK-E-VGYTS----------ILNLLRITDRSKN 145 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~L~---~L~l~~n-~i~~~~p~~~~~~~~l~-~-~~~~n----------~l~~L~~l~l~~n 145 (181)
+ +|. + ..+.+|+ .+++++| .+++..+..+..+++|+ + .+.+| ..++|+.+++++|
T Consensus 119 ~-lp~-~-------~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 119 M-FPD-L-------TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp S-CCC-C-------TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred c-ccc-c-------ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 4 444 5 6666666 8888888 88755555688888888 6 45454 2357899999999
Q ss_pred c-cccCCChhHHHhc-ccCCEeEecCCcccccCCCC
Q 039018 146 N-FSGVLPAELVTDL-VALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 146 ~-~~~~~p~~~~~~l-~~L~~L~L~~n~l~~~~p~~ 179 (181)
+ ++ .++...|..+ ++|+.|++++|.++ .+|..
T Consensus 190 ~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~ 223 (239)
T 2xwt_C 190 KYLT-VIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK 223 (239)
T ss_dssp TTCC-EECTTTTTTCSBCCSEEECTTCCCC-CCCCT
T ss_pred CCcc-cCCHHHhhccccCCcEEECCCCccc-cCChh
Confidence 5 88 5554444888 99999999999998 56653
No 59
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=8.3e-18 Score=139.19 Aligned_cols=157 Identities=19% Similarity=0.208 Sum_probs=106.5
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
||..+. ++++.|++++|.+++..+ ..+.++++|++ ++++|.+.+..|..++.+++|++|++++|.+
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRLPA-----------ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCCCG-----------GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred cccccC--CCCcEEECCCCCCCCcCH-----------HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 666654 688999999999884333 23566677777 7777777766666667777777777777766
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCccc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFS 148 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~ 148 (181)
.+..+..| ..+.+|++|++++|.+++..|..++.+++|++ .+.+| .+++|++|++++|.++
T Consensus 86 ~~l~~~~~-------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 86 SQLSDKTF-------AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CCCCTTTT-------TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred CccChhhh-------ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 64444455 66777777777777776444456666666666 44444 4567888888888888
Q ss_pred cCCChhHHH--hcccCCEeEecCCcccccCCCC
Q 039018 149 GVLPAELVT--DLVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 149 ~~~p~~~~~--~l~~L~~L~L~~n~l~~~~p~~ 179 (181)
+..+..+ . .+++|+.|++++|.+++..|.+
T Consensus 159 ~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~ 190 (680)
T 1ziw_A 159 ALKSEEL-DIFANSSLKKLELSSNQIKEFSPGC 190 (680)
T ss_dssp CBCHHHH-GGGTTCEESEEECTTCCCCCBCTTG
T ss_pred ccCHHHh-hccccccccEEECCCCcccccChhh
Confidence 5444433 4 3478888899888888666654
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=1.9e-17 Score=126.32 Aligned_cols=157 Identities=18% Similarity=0.234 Sum_probs=90.4
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc-
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN- 79 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~- 79 (181)
+|..+. ++|+.|++++|.+.+..|+ .+.++++|++ ++++|.+.+..|..++.+++|++|++++|.
T Consensus 48 ip~~~~--~~l~~L~l~~n~i~~~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 114 (332)
T 2ft3_A 48 VPKEIS--PDTTLLDLQNNDISELRKD-----------DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114 (332)
T ss_dssp CCSCCC--TTCCEEECCSSCCCEECTT-----------TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred cCCCCC--CCCeEEECCCCcCCccCHh-----------HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence 444442 5677777777777643333 3444555555 555555554444445555555555555554
Q ss_pred --------------------ccccchhHhhhccCCCCCCCCccEEEccccccee--ecCchhhcc---------------
Q 039018 80 --------------------KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSG--AIPACISNS--------------- 122 (181)
Q Consensus 80 --------------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~p~~~~~~--------------- 122 (181)
+....+..+ ..+++|+.|++++|.++. ..|..+..+
T Consensus 115 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 115 VEIPPNLPSSLVELRIHDNRIRKVPKGVF-------SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI 187 (332)
T ss_dssp CSCCSSCCTTCCEEECCSSCCCCCCSGGG-------SSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSC
T ss_pred CccCccccccCCEEECCCCccCccCHhHh-------CCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCcc
Confidence 443333334 677888888888887752 344444433
Q ss_pred -----ccccc-ccccc-----------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018 123 -----SARKE-VGYTS-----------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 123 -----~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
++|++ .+.+| .+++|++|++++|.+++..+..+ ..+++|+.|++++|.++ .+|.++
T Consensus 188 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp CSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCC-BCCTTG
T ss_pred CccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCe-ecChhh
Confidence 22333 22222 45567777777777774444455 77778888888888877 677654
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=1.4e-17 Score=137.84 Aligned_cols=163 Identities=26% Similarity=0.261 Sum_probs=79.0
Q ss_pred CCCCCCCcCCCeeeccCcccccccCc-cccc-------------cccccCCcccccccchh-cccccccc--CCCCcccC
Q 039018 3 PNGPENLSSLRYLDLSDNQFNSTIPE-WISR-------------INCTISSGLGNLTSLKH-SISYNVLE--GKLPTSFG 65 (181)
Q Consensus 3 p~~~~~l~~L~~L~ls~n~i~~~~p~-~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~--~~~~~~~~ 65 (181)
|..+..+++|+.|++++|.+.+.+|. .+.. +....+..+..+++|+. ++++|.+. +..|..+.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 45666677777777777777654442 1111 11112223333444444 44444433 23444455
Q ss_pred CCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeec----C----chhhccccccc-ccccc----
Q 039018 66 RLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAI----P----ACISNSSARKE-VGYTS---- 132 (181)
Q Consensus 66 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~----p----~~~~~~~~l~~-~~~~n---- 132 (181)
.+++|++|++++|.+.+..+..+ ..+.+|+.|++++|++++.. | ..+..+++|++ .+.+|
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 550 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDML-------EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTT-------TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC
T ss_pred cCCCCCEEECCCCCCCcCChhhh-------ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC
Confidence 55555555555555554444444 55555666666665554221 1 11444444444 33332
Q ss_pred -------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 133 -------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 133 -------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
.+++|+.+++++|+++ .+|...|..+++|+.|+|++|.++
T Consensus 551 i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 551 IPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCC
Confidence 3344555555555555 334333355555555555555555
No 62
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=5e-18 Score=132.11 Aligned_cols=100 Identities=20% Similarity=0.162 Sum_probs=49.8
Q ss_pred CCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCc
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPR 71 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~ 71 (181)
+.++++|++|++++|.+.+..+..+.. +....|..++++++|+. ++++|.+....+..+..+++|+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 355677888888888777433333322 11222333444455555 5555554422222234455555
Q ss_pred EEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccce
Q 039018 72 SISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS 112 (181)
Q Consensus 72 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 112 (181)
+|++++|.+.+..+..+ ..+++|+.|++++|.++
T Consensus 145 ~L~L~~n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTF-------QATTSLQNLQLSSNRLT 178 (390)
T ss_dssp EEECCSSCCCBCCTTTT-------SSCTTCCEEECCSSCCS
T ss_pred EEECCCCccCccChhhc-------cCCCCCCEEECCCCcCC
Confidence 55555555444334444 55555555555555554
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=9.4e-18 Score=142.22 Aligned_cols=149 Identities=23% Similarity=0.223 Sum_probs=71.6
Q ss_pred CcCCCeeeccCcccccccCccccc-------------ccccc-CCcccccccchh-ccccccccCCCCcccCCCCCCcEE
Q 039018 9 LSSLRYLDLSDNQFNSTIPEWISR-------------INCTI-SSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSI 73 (181)
Q Consensus 9 l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l-~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L 73 (181)
.++|+.|++++|.|++..|..+.. ....+ |..+.++++|+. ++++|.+.+..|+.++.+++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 467777888888777444433221 00011 233444444444 455444444444444445555555
Q ss_pred EcCCCcccccchhH--hhhccCCCCCCCCccEEEcccccceeecC-chhhcccccccccccccCCcccEEEccCCccccC
Q 039018 74 SLSWANKSQEILEI--FHSFSRDNWTLRSLQILDIACNNLSGAIP-ACISNSSARKEVGYTSILNLLRITDRSKNNFSGV 150 (181)
Q Consensus 74 ~l~~n~~~~~~~~~--~~~~~~~~~~~~~L~~L~l~~n~i~~~~p-~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~ 150 (181)
++++|.+.+..+.. + ..+++|+.|++++|.+++..+ ..++.+ ++|++|++++|.+++.
T Consensus 103 ~Ls~n~l~~~~~~~~~~-------~~L~~L~~L~Ls~N~l~~~~~~~~~~~L------------~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYF-------RNLKALTRLDLSKNQIRSLYLHPSFGKL------------NSLKSIDFSSNQIFLV 163 (844)
T ss_dssp ECTTCCCSSCCSTTCCC-------SSCSSCCEEEEESCCCCCCCCCGGGGTC------------SSCCEEEEESSCCCCC
T ss_pred eCcCCCCCcccccCccc-------cccCCCCEEECCCCcccccccchhHhhC------------CCCCEEECCCCcCCee
Confidence 55544444333222 3 444555555555555443322 234443 4455556655555544
Q ss_pred CChhHHHhc--ccCCEeEecCCcccccCC
Q 039018 151 LPAELVTDL--VALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 151 ~p~~~~~~l--~~L~~L~L~~n~l~~~~p 177 (181)
.+..+ ..+ ++|+.|+++.|.+.+.+|
T Consensus 164 ~~~~l-~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 164 CEHEL-EPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp CSGGG-HHHHHCSSCCCEECCSBSCCCCC
T ss_pred CHHHc-ccccCCccceEECCCCccccccc
Confidence 44444 444 445555555555544443
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=3.4e-18 Score=136.96 Aligned_cols=104 Identities=14% Similarity=0.060 Sum_probs=80.7
Q ss_pred CCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhh-ccccccc-ccccc---------cCC
Q 039018 67 LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS-NSSARKE-VGYTS---------ILN 135 (181)
Q Consensus 67 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~-~~~~l~~-~~~~n---------~l~ 135 (181)
+++|+.|++++|.+.+..|..+ ..+++|+.|++++|.+++..|..+. .+++|++ .+.+| .++
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 191 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDE-------GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA 191 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCG-------GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCT
T ss_pred cCCCCEEECCCCCCCCCCchhh-------cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCC
Confidence 3455566666666555555555 7788999999999999887777775 7888888 56666 578
Q ss_pred cccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018 136 LLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 136 ~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
+|++|++++|.+++ +|..+ ..+++|+.|+|++|.++ .+|..+
T Consensus 192 ~L~~L~Ls~N~l~~-~~~~~-~~l~~L~~L~Ls~N~l~-~lp~~l 233 (487)
T 3oja_A 192 KLKTLDLSSNKLAF-MGPEF-QSAAGVTWISLRNNKLV-LIEKAL 233 (487)
T ss_dssp TCCEEECCSSCCCE-ECGGG-GGGTTCSEEECTTSCCC-EECTTC
T ss_pred CCCEEECCCCCCCC-CCHhH-cCCCCccEEEecCCcCc-ccchhh
Confidence 89999999999994 56566 89999999999999999 577765
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=5.3e-18 Score=138.78 Aligned_cols=100 Identities=20% Similarity=0.162 Sum_probs=49.2
Q ss_pred CCCCcCCCeeeccCcccccccCccccc-------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCc
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPR 71 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~ 71 (181)
+.++++|+.|++++|.+.+..|..+.. +.+..|..++++++|+. ++++|.+....+..++.+++|+
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 355678888888888887544433322 12222233344444444 4444444422222234444444
Q ss_pred EEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccce
Q 039018 72 SISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS 112 (181)
Q Consensus 72 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 112 (181)
+|++++|.+.+..|..+ ..+++|+.|++++|.++
T Consensus 151 ~L~Ls~N~l~~~~~~~~-------~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTF-------QATTSLQNLQLSSNRLT 184 (597)
T ss_dssp EEECCSSCCCBCCTTTT-------TTCTTCCEEECTTSCCS
T ss_pred EEEeeCCcCCCCChhhh-------hcCCcCcEEECcCCCCC
Confidence 44444444444444444 44555555555555544
No 66
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.4e-17 Score=119.09 Aligned_cols=133 Identities=23% Similarity=0.320 Sum_probs=110.2
Q ss_pred CeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhc
Q 039018 13 RYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSF 91 (181)
Q Consensus 13 ~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 91 (181)
+.++++++.++ .+|. .+. +.++. ++++|.+.+..+..+..+++|++|++++|.+.+..|..|
T Consensus 14 ~~v~c~~~~l~-~iP~-----------~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--- 76 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPT-----------NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--- 76 (220)
T ss_dssp TEEECTTSCCS-SCCS-----------SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT---
T ss_pred CEEEcCCCCcC-cCCC-----------ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh---
Confidence 57899999988 4554 332 56777 899999997777789999999999999999998888888
Q ss_pred cCCCCCCCCccEEEcccccceeecCc-hhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCC
Q 039018 92 SRDNWTLRSLQILDIACNNLSGAIPA-CISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170 (181)
Q Consensus 92 ~~~~~~~~~L~~L~l~~n~i~~~~p~-~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n 170 (181)
..+.+|++|++++|.++ .+|. .+.. +++|++|++++|++++..|..+ ..+++|+.|+|++|
T Consensus 77 ----~~l~~L~~L~Ls~N~l~-~l~~~~f~~------------l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 77 ----QGLRSLNSLVLYGNKIT-ELPKSLFEG------------LFSLQLLLLNANKINCLRVDAF-QDLHNLNLLSLYDN 138 (220)
T ss_dssp ----TTCSSCCEEECCSSCCC-CCCTTTTTT------------CTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS
T ss_pred ----hCCcCCCEEECCCCcCC-ccCHhHccC------------CCCCCEEECCCCCCCEeCHHHc-CCCCCCCEEECCCC
Confidence 99999999999999998 5554 4566 4459999999999996656666 99999999999999
Q ss_pred cccccCCCCC
Q 039018 171 HFKEKFPGSI 180 (181)
Q Consensus 171 ~l~~~~p~~i 180 (181)
.+++..+..+
T Consensus 139 ~l~~~~~~~~ 148 (220)
T 2v9t_B 139 KLQTIAKGTF 148 (220)
T ss_dssp CCSCCCTTTT
T ss_pred cCCEECHHHH
Confidence 9995544444
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=2e-17 Score=124.18 Aligned_cols=149 Identities=19% Similarity=0.134 Sum_probs=104.3
Q ss_pred CCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018 3 PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS 81 (181)
Q Consensus 3 p~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 81 (181)
|..+.++++|+.|++++|.+++ ++. .+.+++|+. ++++|.+. .+|..+..+++|++|++++|.+.
T Consensus 48 ~~~~~~l~~L~~L~L~~n~l~~-~~~------------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~ 113 (290)
T 1p9a_G 48 LATLMPYTRLTQLNLDRAELTK-LQV------------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113 (290)
T ss_dssp GGGGTTCTTCCEEECTTSCCCE-EEC------------CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC
T ss_pred HHHhhcCCCCCEEECCCCccCc-ccC------------CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc
Confidence 4567788899999999998873 222 145566666 66666666 55666666666666776666666
Q ss_pred ccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCcccc
Q 039018 82 QEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSG 149 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~ 149 (181)
+..+..| ..+++|+.|++++|++++..+..+..+++|++ .+.+| .+++|++|++++|+++
T Consensus 114 ~l~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 114 SLPLGAL-------RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp CCCSSTT-------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred ccCHHHH-------cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence 5444555 66666666666666666433344556666666 44444 3677999999999999
Q ss_pred CCChhHHHhcccCCEeEecCCcccc
Q 039018 150 VLPAELVTDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 150 ~~p~~~~~~l~~L~~L~L~~n~l~~ 174 (181)
.+|..+ ..+..|+.++|++|.+..
T Consensus 186 ~ip~~~-~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 186 TIPKGF-FGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTT-TTTCCCSEEECCSCCBCC
T ss_pred ccChhh-cccccCCeEEeCCCCccC
Confidence 889888 778899999999998864
No 68
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.6e-18 Score=144.74 Aligned_cols=143 Identities=18% Similarity=0.130 Sum_probs=112.4
Q ss_pred CCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018 3 PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS 81 (181)
Q Consensus 3 p~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 81 (181)
|..+..++.|+.|+|++|.+. .+| ..+..+++|+. ++++|.++ .+|..++.+++|++|++++|.+.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~-----------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NIS-----------ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCC-----------GGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred hhhhccCCCCcEEECCCCCCC-CCC-----------hhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 566778889999999999988 444 44567888999 99999998 88888999999999999999988
Q ss_pred ccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcc-
Q 039018 82 QEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV- 160 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~- 160 (181)
.+|..+ +.+.+|++|++++|.++ .+|..++.++ +|++|++++|.+++.+|..+ ..+.
T Consensus 284 -~lp~~~-------~~l~~L~~L~L~~N~l~-~lp~~~~~l~------------~L~~L~L~~N~l~~~~p~~~-~~~~~ 341 (727)
T 4b8c_D 284 -SLPAEL-------GSCFQLKYFYFFDNMVT-TLPWEFGNLC------------NLQFLGVEGNPLEKQFLKIL-TEKSV 341 (727)
T ss_dssp -SCCSSG-------GGGTTCSEEECCSSCCC-CCCSSTTSCT------------TCCCEECTTSCCCSHHHHHH-HHHHH
T ss_pred -ccChhh-------cCCCCCCEEECCCCCCC-ccChhhhcCC------------CccEEeCCCCccCCCChHHH-hhcch
Confidence 678888 88999999999999997 8888888744 48999999999997777666 4432
Q ss_pred cCCEeEecCCcccccCCCCC
Q 039018 161 ALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 161 ~L~~L~L~~n~l~~~~p~~i 180 (181)
.+..++|++|.+++.+|..+
T Consensus 342 ~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 342 TGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp HHHHHHHHHCCCCCCCCCC-
T ss_pred hhhHHhhccCcccCcCcccc
Confidence 23357788888888888765
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.73 E-value=3e-17 Score=133.04 Aligned_cols=157 Identities=24% Similarity=0.162 Sum_probs=95.3
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
||..+. ++++.|++++|.+++..+ ..+.++++|++ ++++|.+.+..+..+..+++|++|++++|.+
T Consensus 22 ip~~l~--~~l~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 22 IPDNLP--FSTKNLDLSFNPLRHLGS-----------YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp CCSSSC--SSCCEEECCSCCCCEECT-----------TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cCCCcc--ccccEEEccCCccCccCh-----------hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 555442 467888888888773222 34566777777 7777777655556677777777777777776
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc------------cCCcccEEEccCCcc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS------------ILNLLRITDRSKNNF 147 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n------------~l~~L~~l~l~~n~~ 147 (181)
....+..+ ..+.+|++|++++|.+++..+..++.+++|++ .+.+| .+++|++|++++|.+
T Consensus 89 ~~~~~~~~-------~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 89 QSLALGAF-------SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CEECTTTT-------TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred CccCHhhh-------cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 65555666 66666666666666665322224555555444 22222 244567777777776
Q ss_pred ccCCChhHHHhcccC----CEeEecCCcccccCCCC
Q 039018 148 SGVLPAELVTDLVAL----RSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 148 ~~~~p~~~~~~l~~L----~~L~L~~n~l~~~~p~~ 179 (181)
++..+..+ +.+.+| +.+++++|.+++..|..
T Consensus 162 ~~~~~~~~-~~l~~L~~~~~~L~l~~n~l~~~~~~~ 196 (570)
T 2z63_A 162 QSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGA 196 (570)
T ss_dssp CEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred ceecHHHc-cchhccchhhhhcccCCCCceecCHHH
Confidence 64444444 666666 66677777766544443
No 70
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=6e-17 Score=117.61 Aligned_cols=130 Identities=22% Similarity=0.283 Sum_probs=109.4
Q ss_pred CCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhh
Q 039018 12 LRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHS 90 (181)
Q Consensus 12 L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 90 (181)
-+.++.+++.++ .+|. .+. ++|+. ++++|.+.+..|..+..+++|++|++++|.+....+..+
T Consensus 21 ~~~v~c~~~~l~-~ip~-----------~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~-- 84 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPA-----------GIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF-- 84 (229)
T ss_dssp TTEEECTTSCCS-SCCS-----------CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--
T ss_pred CCEeEccCCCcC-ccCC-----------CCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc--
Confidence 456889998888 4554 332 67888 999999998888889999999999999999976655667
Q ss_pred ccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCC
Q 039018 91 FSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170 (181)
Q Consensus 91 ~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n 170 (181)
..+++|+.|++++|++++..+..+.. +++|++|++++|+++ .+|..+ ..+++|+.|+|++|
T Consensus 85 -----~~l~~L~~L~Ls~N~l~~l~~~~~~~------------l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 85 -----DSLTQLTVLDLGTNQLTVLPSAVFDR------------LVHLKELFMCCNKLT-ELPRGI-ERLTHLTHLALDQN 145 (229)
T ss_dssp -----TTCTTCCEEECCSSCCCCCCTTTTTT------------CTTCCEEECCSSCCC-SCCTTG-GGCTTCSEEECCSS
T ss_pred -----ccCCCcCEEECCCCcCCccChhHhCc------------chhhCeEeccCCccc-ccCccc-ccCCCCCEEECCCC
Confidence 88999999999999999554555666 445999999999999 889888 99999999999999
Q ss_pred cccccCC
Q 039018 171 HFKEKFP 177 (181)
Q Consensus 171 ~l~~~~p 177 (181)
.+++ +|
T Consensus 146 ~l~~-~~ 151 (229)
T 3e6j_A 146 QLKS-IP 151 (229)
T ss_dssp CCCC-CC
T ss_pred cCCc-cC
Confidence 9994 54
No 71
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=3.1e-17 Score=118.48 Aligned_cols=135 Identities=19% Similarity=0.201 Sum_probs=111.2
Q ss_pred CCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCC-cccCCCCCCcEEEcCCCcccccchhHhh
Q 039018 12 LRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLP-TSFGRLREPRSISLSWANKSQEILEIFH 89 (181)
Q Consensus 12 L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 89 (181)
-+.+++++|.++ .+|+ .+. ..++. ++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+
T Consensus 13 ~~~l~~s~n~l~-~iP~-----------~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~- 77 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPE-----------HIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF- 77 (220)
T ss_dssp TTEEECCSSCCS-SCCS-----------CCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-
T ss_pred CCEeEeCCCCcc-cCcc-----------CCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh-
Confidence 358999999998 4554 222 23456 899999996644 457899999999999999997777788
Q ss_pred hccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecC
Q 039018 90 SFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFH 169 (181)
Q Consensus 90 ~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~ 169 (181)
..+.+|+.|++++|.+++..+..+..+ ++|++|++++|++++..|..+ ..+++|+.|+|++
T Consensus 78 ------~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~ 138 (220)
T 2v70_A 78 ------EGASGVNEILLTSNRLENVQHKMFKGL------------ESLKTLMLRSNRITCVGNDSF-IGLSSVRLLSLYD 138 (220)
T ss_dssp ------TTCTTCCEEECCSSCCCCCCGGGGTTC------------SSCCEEECTTSCCCCBCTTSS-TTCTTCSEEECTT
T ss_pred ------CCCCCCCEEECCCCccCccCHhHhcCC------------cCCCEEECCCCcCCeECHhHc-CCCccCCEEECCC
Confidence 899999999999999996666667774 459999999999996667777 9999999999999
Q ss_pred CcccccCCCCC
Q 039018 170 NHFKEKFPGSI 180 (181)
Q Consensus 170 n~l~~~~p~~i 180 (181)
|.+++..|..|
T Consensus 139 N~l~~~~~~~~ 149 (220)
T 2v70_A 139 NQITTVAPGAF 149 (220)
T ss_dssp SCCCCBCTTTT
T ss_pred CcCCEECHHHh
Confidence 99997767765
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=9.5e-18 Score=126.90 Aligned_cols=149 Identities=15% Similarity=0.037 Sum_probs=93.0
Q ss_pred CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccccc--
Q 039018 7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQE-- 83 (181)
Q Consensus 7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-- 83 (181)
.++++|+.|++++|.+.+..+..- ...+..+++|++ ++++|.+.+..+..++.+++|++|++++|.+.+.
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~-------~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 186 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLA-------ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG 186 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHH-------HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH
T ss_pred ccCCCCCEEEeecccccchhhhhH-------HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh
Confidence 455556666666666553332100 022345777888 8888888766677788888888888888876542
Q ss_pred ch--hHhhhccCCCCCCCCccEEEcccccceeecCc----hhhccccccc-ccccc-----------c---CCcccEEEc
Q 039018 84 IL--EIFHSFSRDNWTLRSLQILDIACNNLSGAIPA----CISNSSARKE-VGYTS-----------I---LNLLRITDR 142 (181)
Q Consensus 84 ~~--~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~----~~~~~~~l~~-~~~~n-----------~---l~~L~~l~l 142 (181)
.+ ..+ ..+++|++|++++|+++ .++. .++.+++|++ .+.+| . +++|++|++
T Consensus 187 ~~~~~~~-------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~L 258 (310)
T 4glp_A 187 LMAALCP-------HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNL 258 (310)
T ss_dssp HHTTSCT-------TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEEC
T ss_pred hhHHHhh-------hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEEC
Confidence 11 112 46677888888888776 3333 2456666666 44444 1 246777777
Q ss_pred cCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018 143 SKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 143 ~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~ 174 (181)
++|+++ .+|..+ . ++|+.|+|++|.+++
T Consensus 259 s~N~l~-~lp~~~-~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 259 SFAGLE-QVPKGL-P--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp CSSCCC-SCCSCC-C--SCCSCEECCSCCCCS
T ss_pred CCCCCC-chhhhh-c--CCCCEEECCCCcCCC
Confidence 777777 666655 2 677777777777774
No 73
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.1e-17 Score=116.42 Aligned_cols=133 Identities=19% Similarity=0.260 Sum_probs=112.5
Q ss_pred CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch
Q 039018 7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL 85 (181)
Q Consensus 7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 85 (181)
..+++|+.|++++|.+. .+ + ++..+++|+. ++++|.+. .+..+..+++|++|++++|.+.+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l-----------~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DL-----------T-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKI 105 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CC-----------T-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGS
T ss_pred hhcCCccEEeccCCCcc-Ch-----------H-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccC
Confidence 45788999999999998 33 3 3778899999 99999665 34578999999999999999987777
Q ss_pred hHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCc-cccCCChhHHHhcccCCE
Q 039018 86 EIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNN-FSGVLPAELVTDLVALRS 164 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~-~~~~~p~~~~~~l~~L~~ 164 (181)
..+ ..+++|+.|++++|.+++..|..+..+ ++|++|++++|. ++ .+| .+ ..+++|+.
T Consensus 106 ~~l-------~~l~~L~~L~Ls~n~i~~~~~~~l~~l------------~~L~~L~L~~n~~i~-~~~-~l-~~l~~L~~ 163 (197)
T 4ezg_A 106 PNL-------SGLTSLTLLDISHSAHDDSILTKINTL------------PKVNSIDLSYNGAIT-DIM-PL-KTLPELKS 163 (197)
T ss_dssp CCC-------TTCTTCCEEECCSSBCBGGGHHHHTTC------------SSCCEEECCSCTBCC-CCG-GG-GGCSSCCE
T ss_pred hhh-------cCCCCCCEEEecCCccCcHhHHHHhhC------------CCCCEEEccCCCCcc-ccH-hh-cCCCCCCE
Confidence 777 899999999999999987777878774 459999999998 66 666 56 89999999
Q ss_pred eEecCCcccccCC
Q 039018 165 LNLFHNHFKEKFP 177 (181)
Q Consensus 165 L~L~~n~l~~~~p 177 (181)
|++++|.+++ ++
T Consensus 164 L~l~~n~i~~-~~ 175 (197)
T 4ezg_A 164 LNIQFDGVHD-YR 175 (197)
T ss_dssp EECTTBCCCC-CT
T ss_pred EECCCCCCcC-hH
Confidence 9999999984 44
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=140.25 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=113.6
Q ss_pred CCCCCCCcCCCeeeccCccccccc-Cccccc-------------cccccCCcccccccchh-ccccccccCCCCcc--cC
Q 039018 3 PNGPENLSSLRYLDLSDNQFNSTI-PEWISR-------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTS--FG 65 (181)
Q Consensus 3 p~~~~~l~~L~~L~ls~n~i~~~~-p~~~~~-------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~--~~ 65 (181)
|..+.++++|++|++++|.+.+.+ |..+.. +....|..++++++|++ ++++|.+.+..+.. ++
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 445555566666666665433333 333332 22344677899999999 99999999766655 89
Q ss_pred CCCCCcEEEcCCCcccccch-hHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccC
Q 039018 66 RLREPRSISLSWANKSQEIL-EIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSK 144 (181)
Q Consensus 66 ~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~ 144 (181)
.+++|++|++++|.+.+..+ ..+ +++++|+.|++++|.+++..+..+..+.. ++|+.|+++.
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~-------~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~----------~~L~~L~L~~ 183 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSF-------GKLNSLKSIDFSSNQIFLVCEHELEPLQG----------KTLSFFSLAA 183 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGG-------GTCSSCCEEEEESSCCCCCCSGGGHHHHH----------CSSCCCEECC
T ss_pred ccCCCCEEECCCCcccccccchhH-------hhCCCCCEEECCCCcCCeeCHHHcccccC----------CccceEECCC
Confidence 99999999999999976544 567 89999999999999999888888876511 3477777777
Q ss_pred CccccCCChhHHHhccc------CCEeEecCCcccccCCCC
Q 039018 145 NNFSGVLPAELVTDLVA------LRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 145 n~~~~~~p~~~~~~l~~------L~~L~L~~n~l~~~~p~~ 179 (181)
|.+.+..|..+ +.+++ |+.|++++|.+++.+|..
T Consensus 184 n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 223 (844)
T 3j0a_A 184 NSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGN 223 (844)
T ss_dssp SBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSG
T ss_pred Cccccccccch-hhcCCccccCceeEEecCCCcCchhHHHH
Confidence 77776665544 44444 777777777777666543
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=1.1e-16 Score=121.06 Aligned_cols=62 Identities=27% Similarity=0.425 Sum_probs=32.3
Q ss_pred CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018 5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS 81 (181)
Q Consensus 5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 81 (181)
.+..+++|+.|++++|.+.+ ++. +..+++|+. ++++|.+.+ + ..+..+++|++|++++|.+.
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~-~~~------------~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~ 120 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITD-LAP------------LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQIT 120 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCC-CGG------------GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCC
T ss_pred hhhccCCCCEEEccCCcCCC-Chh------------HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCC
Confidence 45666777777777777762 221 344444444 555554442 2 23444455555555554443
No 76
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=115.28 Aligned_cols=127 Identities=21% Similarity=0.262 Sum_probs=99.4
Q ss_pred CeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhc
Q 039018 13 RYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSF 91 (181)
Q Consensus 13 ~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 91 (181)
+.+++++|.++ .+|+ .+. +++++ ++++|.+. .+|..+..+++|++|++++|.+.+..+..|
T Consensus 13 ~~l~~~~~~l~-~ip~-----------~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f--- 74 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPK-----------GIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSF--- 74 (193)
T ss_dssp TEEECTTSCCS-SCCS-----------CCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTT---
T ss_pred CEEEcCCCCCC-cCCC-----------CCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHc---
Confidence 56888888888 4554 222 46677 88888888 777888889999999999998887777777
Q ss_pred cCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCc
Q 039018 92 SRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNH 171 (181)
Q Consensus 92 ~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~ 171 (181)
..+.+|+.|++++|.+++..|..+..+ ++|++|++++|.++ .+|...|..+++|+.|++++|.
T Consensus 75 ----~~l~~L~~L~Ls~N~l~~i~~~~f~~l------------~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 75 ----SNMTQLLTLILSYNRLRCIPPRTFDGL------------KSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ----TTCTTCCEEECCSSCCCBCCTTTTTTC------------TTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSC
T ss_pred ----cCCCCCCEEECCCCccCEeCHHHhCCC------------CCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCC
Confidence 888999999999999886666667764 44888999999988 5565444888899999999888
Q ss_pred ccc
Q 039018 172 FKE 174 (181)
Q Consensus 172 l~~ 174 (181)
+..
T Consensus 138 ~~C 140 (193)
T 2wfh_A 138 LYC 140 (193)
T ss_dssp EEC
T ss_pred eec
Confidence 753
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=1.4e-17 Score=121.45 Aligned_cols=148 Identities=20% Similarity=0.208 Sum_probs=113.8
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-cccccc-ccCCCCcccCCCCCCcEEEcCC-C
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNV-LEGKLPTSFGRLREPRSISLSW-A 78 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n 78 (181)
+|. +. +.|+.|++++|+++ .+|. ..+.++++|+. ++++|. ++...+..+..+++|++|++++ |
T Consensus 26 ip~-~~--~~l~~L~l~~n~l~-~i~~----------~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 26 IPS-LP--PSTQTLKLIETHLR-TIPS----------HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91 (239)
T ss_dssp CCC-CC--TTCCEEEEESCCCS-EECT----------TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred cCC-CC--CcccEEEEeCCcce-EECH----------HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence 565 33 48999999999998 3332 35788999999 999997 8755666889999999999998 9
Q ss_pred cccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccc---c-ccccc------------cCCccc-EEE
Q 039018 79 NKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK---E-VGYTS------------ILNLLR-ITD 141 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~---~-~~~~n------------~l~~L~-~l~ 141 (181)
.+....+..| ..+++|+.|++++|+++ .+|. +..+++|+ + .+.+| .+++|+ +++
T Consensus 92 ~l~~i~~~~f-------~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 92 NLTYIDPDAL-------KELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162 (239)
T ss_dssp TCCEECTTSE-------ECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred CeeEcCHHHh-------CCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence 9886666777 88999999999999998 5777 77777766 4 33332 456677 888
Q ss_pred ccCCccccCCChhHHHhcccCCEeEecCCc-ccc
Q 039018 142 RSKNNFSGVLPAELVTDLVALRSLNLFHNH-FKE 174 (181)
Q Consensus 142 l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~-l~~ 174 (181)
+++|.++ .+|...|.. ++|+.|++++|. +++
T Consensus 163 l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 163 LYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTV 194 (239)
T ss_dssp CCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCE
T ss_pred cCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCccc
Confidence 8888887 666655344 778888888884 773
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=2e-17 Score=133.64 Aligned_cols=153 Identities=18% Similarity=0.147 Sum_probs=101.7
Q ss_pred CCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018 3 PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS 81 (181)
Q Consensus 3 p~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 81 (181)
|..+.++++|++|++++|.+.+..| ..++++++|++ ++++|.+.+..+..++.+++|++|++++|.+.
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~-----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEG-----------DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECT-----------TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred hhhhhcCCcccEEECCCCCcCccCh-----------hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccc
Confidence 5678999999999999999985444 34566777777 77777777555555777777777777777765
Q ss_pred c-cchhHhhhccCCCCCCCCccEEEcccccceeecC-chhhccccccc-ccccc-----------cCCcccEEEccCCcc
Q 039018 82 Q-EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP-ACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNF 147 (181)
Q Consensus 82 ~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p-~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~ 147 (181)
+ ..|..+ ..+++|+.|++++|.+.+.+| ..+..+++|++ .+.+| .+++|+++++++|.+
T Consensus 112 ~~~~~~~~-------~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 112 TLGVTSLF-------PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp SSCSSCSC-------TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred ccchhhhh-------hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 4 234445 566666666666665322443 45666666666 33333 345577777777776
Q ss_pred ccCCChhHHHhcccCCEeEecCCcccc
Q 039018 148 SGVLPAELVTDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 148 ~~~~p~~~~~~l~~L~~L~L~~n~l~~ 174 (181)
. .+|..+++.+++|++|++++|.+++
T Consensus 185 ~-~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 185 A-FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp T-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred c-ccchhhHhhcccccEEEccCCcccc
Confidence 5 5565554567777777777777774
No 79
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=7.4e-17 Score=114.12 Aligned_cols=120 Identities=21% Similarity=0.263 Sum_probs=102.4
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
||..+.. .|+.|++++|.+.+..++ ..++.+++|+. ++++|.+++..|..+..+++|++|++++|.+
T Consensus 23 ip~~~~~--~l~~L~l~~n~i~~~~~~----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 23 IPRDIPL--HTTELLLNDNELGRISSD----------GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp CCSCCCT--TCSEEECCSCCCCSBCCS----------CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CccCCCC--CCCEEECCCCcCCccCCc----------cccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 6666643 899999999999833332 13788999999 9999999988899999999999999999999
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCC
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLP 152 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p 152 (181)
.+..+..+ ..+++|+.|++++|++++..|..+..++ +|+++++++|.+.+..+
T Consensus 91 ~~~~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~------------~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 91 KEISNKMF-------LGLHQLKTLNLYDNQISCVMPGSFEHLN------------SLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CEECSSSS-------TTCTTCCEEECCSSCCCEECTTSSTTCT------------TCCEEECTTCCBCCSGG
T ss_pred CccCHHHh-------cCCCCCCEEECCCCcCCeeCHHHhhcCC------------CCCEEEeCCCCccCcCc
Confidence 98777778 8999999999999999988888888744 49999999999986554
No 80
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=8.2e-17 Score=109.21 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=106.1
Q ss_pred CCcCCCeeeccCcccc-cccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch
Q 039018 8 NLSSLRYLDLSDNQFN-STIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL 85 (181)
Q Consensus 8 ~l~~L~~L~ls~n~i~-~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 85 (181)
..++|+.|++++|.+. +.+| ..+..+++|+. ++++|.+.+. ..++.+++|++|++++|.+.+..|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLE-----------GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCC-----------SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH
T ss_pred CCccCeEEEccCCcCChhHHH-----------HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH
Confidence 3478999999999997 5444 44678899999 9999999854 778999999999999999987788
Q ss_pred hHhhhccCCCCCCCCccEEEcccccceee-cCchhhcccccccccccccCCcccEEEccCCccccCCCh---hHHHhccc
Q 039018 86 EIFHSFSRDNWTLRSLQILDIACNNLSGA-IPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA---ELVTDLVA 161 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~---~~~~~l~~ 161 (181)
..+ ..+++|+.|++++|.+++. .+..+.. +++|++|++++|.+++ ++. ..+..+++
T Consensus 82 ~~~-------~~l~~L~~L~ls~N~i~~~~~~~~~~~------------l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 82 VLA-------EKCPNLTHLNLSGNKIKDLSTIEPLKK------------LENLKSLDLFNCEVTN-LNDYRENVFKLLPQ 141 (149)
T ss_dssp HHH-------HHCTTCCEEECTTSCCCSHHHHGGGGG------------CTTCCEEECTTCGGGG-STTHHHHHHHHCTT
T ss_pred HHh-------hhCCCCCEEECCCCcCCChHHHHHHhh------------CCCCCEEeCcCCcccc-hHHHHHHHHHHCCC
Confidence 887 7799999999999999842 2366776 4459999999999995 454 34499999
Q ss_pred CCEeEecC
Q 039018 162 LRSLNLFH 169 (181)
Q Consensus 162 L~~L~L~~ 169 (181)
|+.|++++
T Consensus 142 L~~L~l~d 149 (149)
T 2je0_A 142 LTYLDGYD 149 (149)
T ss_dssp CCEETTBC
T ss_pred cccccCCC
Confidence 99999863
No 81
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=131.30 Aligned_cols=146 Identities=20% Similarity=0.280 Sum_probs=86.7
Q ss_pred CCCcCCCeeeccCcccccccCccccc-------------ccc--ccCCcccccccchh-ccccccccCCCCcc-cCCCCC
Q 039018 7 ENLSSLRYLDLSDNQFNSTIPEWISR-------------INC--TISSGLGNLTSLKH-SISYNVLEGKLPTS-FGRLRE 69 (181)
Q Consensus 7 ~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~--~l~~~l~~l~~L~~-~l~~n~~~~~~~~~-~~~l~~ 69 (181)
..+++|+.|++++|.+.+..|..+.. +.+ .+|..++.+++|+. ++++|.+.+.+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 56778888888888887555543321 000 12223344444444 44444444323322 344444
Q ss_pred CcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCcccc
Q 039018 70 PRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSG 149 (181)
Q Consensus 70 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~ 149 (181)
|+.|++++|.+.+..|..+ . .+|+.|++++|+++ .+|..+.. +++|++|++++|+++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l-------~--~~L~~L~Ls~N~l~-~ip~~~~~------------l~~L~~L~L~~N~l~- 457 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCL-------P--PRIKVLDLHSNKIK-SIPKQVVK------------LEALQELNVASNQLK- 457 (520)
T ss_dssp CCEEECCSSCCCGGGGGSC-------C--TTCCEEECCSSCCC-CCCGGGGG------------CTTCCEEECCSSCCC-
T ss_pred CCEEECcCCCCCcchhhhh-------c--ccCCEEECCCCccc-ccchhhhc------------CCCCCEEECCCCcCC-
Confidence 4444444444443333322 1 45555555555555 55554444 566999999999999
Q ss_pred CCChhHHHhcccCCEeEecCCccccc
Q 039018 150 VLPAELVTDLVALRSLNLFHNHFKEK 175 (181)
Q Consensus 150 ~~p~~~~~~l~~L~~L~L~~n~l~~~ 175 (181)
.+|...+..+++|+.|++++|+++++
T Consensus 458 ~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 458 SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCHHHhccCCcccEEECcCCCCccc
Confidence 78876348999999999999999865
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=124.82 Aligned_cols=153 Identities=19% Similarity=0.145 Sum_probs=100.0
Q ss_pred CcCCCeeeccCcccccccCccccccccccCCcc-cccccchh-ccccccccCCCC----cccCCCCCCcEEEcCCCcccc
Q 039018 9 LSSLRYLDLSDNQFNSTIPEWISRINCTISSGL-GNLTSLKH-SISYNVLEGKLP----TSFGRLREPRSISLSWANKSQ 82 (181)
Q Consensus 9 l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l-~~l~~L~~-~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~ 82 (181)
+++|+.|++++|.+.+..|..+ + ..+++|+. ++++|.+.+..+ ..+..+++|++|++++|.+.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~----------~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 159 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLP----------LEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA 159 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCS----------SSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC
T ss_pred cCceeEEEeeCCEeccchhhhh----------hhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch
Confidence 3457777888777775555321 1 56777777 777777775443 233457777888887777766
Q ss_pred cchhHhhhccCCCCCCCCccEEEcccccceee--c--Cchhhccccccc-ccccc--------------cCCcccEEEcc
Q 039018 83 EILEIFHSFSRDNWTLRSLQILDIACNNLSGA--I--PACISNSSARKE-VGYTS--------------ILNLLRITDRS 143 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~--p~~~~~~~~l~~-~~~~n--------------~l~~L~~l~l~ 143 (181)
..+..+ ..+++|+.|++++|++.+. + +..++.+++|++ .+.+| .+++|++|+++
T Consensus 160 ~~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls 232 (310)
T 4glp_A 160 FSCEQV-------RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLS 232 (310)
T ss_dssp CCTTSC-------CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECT
T ss_pred hhHHHh-------ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECC
Confidence 666666 7777788888887776531 2 222356666777 44444 23667778888
Q ss_pred CCccccCCChhHHHhc---ccCCEeEecCCcccccCCCCC
Q 039018 144 KNNFSGVLPAELVTDL---VALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 144 ~n~~~~~~p~~~~~~l---~~L~~L~L~~n~l~~~~p~~i 180 (181)
+|++++..|+.+ ..+ ++|+.|+|++|.++ .+|..+
T Consensus 233 ~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~-~lp~~~ 270 (310)
T 4glp_A 233 HNSLRATVNPSA-PRCMWSSALNSLNLSFAGLE-QVPKGL 270 (310)
T ss_dssp TSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred CCCCCccchhhH-HhccCcCcCCEEECCCCCCC-chhhhh
Confidence 887775556555 554 57778888888777 667654
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=9.3e-17 Score=121.50 Aligned_cols=140 Identities=19% Similarity=0.230 Sum_probs=107.7
Q ss_pred CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI 84 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 84 (181)
+.++++|+.|++++|.+.+ ++ .+..+++|+. ++++|.+.+ ++. +..+++|++|++++|.+.+..
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-~~------------~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~ 145 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-VS------------AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNIS 145 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-CG------------GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred HccCCCCCEEEccCCcCCC-ch------------hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCc
Confidence 7888999999999999883 23 3677888888 888888874 443 788888888888888877543
Q ss_pred hhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChh
Q 039018 85 LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAE 154 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~ 154 (181)
+ + ..+++|+.|++++|.++ .++. +..+++|++ .+.+| .+++|++|++++|+++ .++ .
T Consensus 146 ~--l-------~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~-~~~-~ 212 (308)
T 1h6u_A 146 P--L-------AGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS-DVS-P 212 (308)
T ss_dssp G--G-------GGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCC-BCG-G
T ss_pred c--c-------cCCCCccEEEccCCcCC-CChh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccC-ccc-c
Confidence 3 5 67888888888888887 3444 777777777 44444 5667899999999998 444 3
Q ss_pred HHHhcccCCEeEecCCcccc
Q 039018 155 LVTDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 155 ~~~~l~~L~~L~L~~n~l~~ 174 (181)
+ ..+++|+.|++++|.+++
T Consensus 213 l-~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 213 L-ANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G-TTCTTCCEEEEEEEEEEC
T ss_pred c-cCCCCCCEEEccCCeeec
Confidence 5 889999999999999874
No 84
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=4.4e-17 Score=123.67 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=103.6
Q ss_pred CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccc-------------------cCCCCcc
Q 039018 4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVL-------------------EGKLPTS 63 (181)
Q Consensus 4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~-------------------~~~~~~~ 63 (181)
..+.++++|+.|++++|.+.+..+ +..+++|++ ++++|.+ .+..+
T Consensus 52 ~~~~~l~~L~~L~Ls~n~l~~~~~-------------~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~-- 116 (317)
T 3o53_A 52 ADLAPFTKLELLNLSSNVLYETLD-------------LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC-- 116 (317)
T ss_dssp HHHTTCTTCCEEECTTSCCEEEEE-------------ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEE--
T ss_pred HHhhCCCcCCEEECCCCcCCcchh-------------hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCc--
Confidence 356778888888888888874322 334444444 4444444 32211
Q ss_pred cCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhh-ccccccc-ccccc---------
Q 039018 64 FGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACIS-NSSARKE-VGYTS--------- 132 (181)
Q Consensus 64 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~-~~~~l~~-~~~~n--------- 132 (181)
..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+++..+..+. .+++|++ .+.+|
T Consensus 117 -~~~~~L~~L~l~~N~l~~~~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 188 (317)
T 3o53_A 117 -SRGQGKKNIYLANNKITMLRDLDE-------GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188 (317)
T ss_dssp -CCCSSCEEEECCSSCCCSGGGBCT-------GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC
T ss_pred -cccCCCCEEECCCCCCCCccchhh-------hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc
Confidence 224566777777777665555555 6778888888888888866566553 6777777 55555
Q ss_pred cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCCC
Q 039018 133 ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGSI 180 (181)
Q Consensus 133 ~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~i 180 (181)
.+++|++|++++|+++ .+|..+ ..+++|+.|++++|.++ .+|..+
T Consensus 189 ~l~~L~~L~Ls~N~l~-~l~~~~-~~l~~L~~L~L~~N~l~-~l~~~~ 233 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLA-FMGPEF-QSAAGVTWISLRNNKLV-LIEKAL 233 (317)
T ss_dssp CCTTCCEEECCSSCCC-EECGGG-GGGTTCSEEECTTSCCC-EECTTC
T ss_pred ccccCCEEECCCCcCC-cchhhh-cccCcccEEECcCCccc-chhhHh
Confidence 4778899999999998 556666 88899999999999988 677654
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=1.2e-16 Score=129.89 Aligned_cols=128 Identities=19% Similarity=0.264 Sum_probs=107.0
Q ss_pred cccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc--cchhHhhhccCCCCCCCCccEEEcccccceeecCc-
Q 039018 42 GNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ--EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA- 117 (181)
Q Consensus 42 ~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~- 117 (181)
..+++|+. ++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+ ..+++|+.|++++|.+++.+|.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT-------KNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT-------TTCTTCCEEECTTSCCBSCCSSC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh-------cCCCCCCEEECCCCcCCCccChh
Confidence 56788888 999999998888889999999999999999875 345667 8899999999999999865665
Q ss_pred hhhccccccc-ccccccC---------CcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018 118 CISNSSARKE-VGYTSIL---------NLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 118 ~~~~~~~l~~-~~~~n~l---------~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~ 179 (181)
.+..+++|++ .+.+|.+ ++|++|++++|+++ .+|..+ ..+++|+.|+|++|.++ .+|..
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~-~~l~~L~~L~L~~N~l~-~l~~~ 491 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDV-THLQALQELNVASNQLK-SVPDG 491 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTT-TSSCCCSEEECCSSCCC-CCCTT
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhh-cCCCCCCEEECCCCCCC-CCCHH
Confidence 4777888888 5666632 68999999999998 889888 58999999999999999 67765
No 86
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=1.2e-16 Score=111.53 Aligned_cols=132 Identities=20% Similarity=0.255 Sum_probs=98.3
Q ss_pred CCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhh
Q 039018 12 LRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHS 90 (181)
Q Consensus 12 L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 90 (181)
.+.+++++++++ .+|. .+ .++++. ++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus 9 ~~~l~~~~~~l~-~~p~-----------~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-- 72 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPT-----------GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF-- 72 (177)
T ss_dssp TTEEECCSSCCS-SCCT-----------TC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--
T ss_pred CCEEEecCCCCc-cCCC-----------CC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc--
Confidence 467888888887 4443 22 246777 888888885555567888899999999888876665666
Q ss_pred ccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCC
Q 039018 91 FSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHN 170 (181)
Q Consensus 91 ~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n 170 (181)
..+.+|+.|++++|.+++..+..+.. +++|++|++++|.++ .+|..++..+++|+.|++++|
T Consensus 73 -----~~l~~L~~L~l~~N~l~~~~~~~~~~------------l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 73 -----DKLTKLTILYLHENKLQSLPNGVFDK------------LTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp -----TTCTTCCEEECCSSCCCCCCTTTTTT------------CTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSS
T ss_pred -----cCCCccCEEECCCCCccccCHHHhhC------------CcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCC
Confidence 78889999999999888444445565 344888999999888 556554478888999999999
Q ss_pred cccccCC
Q 039018 171 HFKEKFP 177 (181)
Q Consensus 171 ~l~~~~p 177 (181)
.+++..|
T Consensus 135 ~~~~~~~ 141 (177)
T 2o6r_A 135 PWDCSCP 141 (177)
T ss_dssp CBCCCHH
T ss_pred CeeccCc
Confidence 8876543
No 87
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.5e-16 Score=122.88 Aligned_cols=141 Identities=23% Similarity=0.211 Sum_probs=114.8
Q ss_pred CCC-CCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018 5 GPE-NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ 82 (181)
Q Consensus 5 ~~~-~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 82 (181)
.+. ++++|+.|++++|+|.+..+ ..+..+++|+. ++++|.+....+..+..+++|++|++++|.+..
T Consensus 58 ~~~~~l~~L~~L~L~~N~i~~i~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 58 WTPTRLTNLHSLLLSHNHLNFISS-----------EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp SSSSCCTTCCEEECCSSCCCEECT-----------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred hhhhcccccCEEECCCCcCCccCh-----------hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE
Confidence 344 89999999999999983222 45788999999 999999997777779999999999999999998
Q ss_pred cchhHhhhccCCCCCCCCccEEEcccccceeecCchh-hcccccccccccccCCcccEEEccCCccccCCChhHHHhccc
Q 039018 83 EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI-SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVA 161 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~-~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~ 161 (181)
..+..| ..+.+|+.|++++|+++ .+|..+ ..+.. +++|+.|++++|+++ .+|...+..++.
T Consensus 127 ~~~~~~-------~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~---------l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 188 (361)
T 2xot_A 127 VDRNAF-------EDMAQLQKLYLSQNQIS-RFPVELIKDGNK---------LPKLMLLDLSSNKLK-KLPLTDLQKLPA 188 (361)
T ss_dssp ECTTTT-------TTCTTCCEEECCSSCCC-SCCGGGTC-------------CTTCCEEECCSSCCC-CCCHHHHHHSCH
T ss_pred ECHHHh-------CCcccCCEEECCCCcCC-eeCHHHhcCccc---------CCcCCEEECCCCCCC-ccCHHHhhhccH
Confidence 778888 89999999999999998 566543 21111 556999999999999 667554488887
Q ss_pred --CCEeEecCCcccc
Q 039018 162 --LRSLNLFHNHFKE 174 (181)
Q Consensus 162 --L~~L~L~~n~l~~ 174 (181)
++.|+|++|.+..
T Consensus 189 ~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 189 WVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHTTEECCSSCEEC
T ss_pred hhcceEEecCCCccC
Confidence 4899999998863
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=1.7e-16 Score=119.16 Aligned_cols=139 Identities=26% Similarity=0.262 Sum_probs=77.9
Q ss_pred CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI 84 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 84 (181)
+..+++|+.|++++|.+.+ ++. +..+++|+. ++++|.+.+ ++ .+..+++|++|++++|.+...
T Consensus 64 ~~~l~~L~~L~L~~n~l~~------------~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~- 127 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTD------------IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI- 127 (291)
T ss_dssp GGGCTTCCEEECCSSCCCC------------CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC-
T ss_pred HhcCCCCCEEEccCCccCC------------Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC-
Confidence 4455555556666555552 112 455556666 666666553 22 355666666666666665532
Q ss_pred hhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChh
Q 039018 85 LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAE 154 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~ 154 (181)
..+ ..+++|+.|++++|++++ + ..+..+++|++ .+.+| .+++|++|++++|.++ .++ .
T Consensus 128 -~~l-------~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~-~l~-~ 195 (291)
T 1h6t_A 128 -NGL-------VHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR-A 195 (291)
T ss_dssp -GGG-------GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-BCG-G
T ss_pred -hhh-------cCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCC-CCh-h
Confidence 234 555666666666666653 2 34555555555 33333 3455667777777666 344 2
Q ss_pred HHHhcccCCEeEecCCccc
Q 039018 155 LVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 155 ~~~~l~~L~~L~L~~n~l~ 173 (181)
+ ..+++|+.|++++|.++
T Consensus 196 l-~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 196 L-AGLKNLDVLELFSQECL 213 (291)
T ss_dssp G-TTCTTCSEEEEEEEEEE
T ss_pred h-ccCCCCCEEECcCCccc
Confidence 4 66667777777776665
No 89
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.68 E-value=1.2e-16 Score=129.72 Aligned_cols=147 Identities=18% Similarity=0.280 Sum_probs=88.3
Q ss_pred CCCcCCCeeeccCcccccccCccccc-------------ccc--ccCCcccccccchh-ccccccccCCCCc-ccCCCCC
Q 039018 7 ENLSSLRYLDLSDNQFNSTIPEWISR-------------INC--TISSGLGNLTSLKH-SISYNVLEGKLPT-SFGRLRE 69 (181)
Q Consensus 7 ~~l~~L~~L~ls~n~i~~~~p~~~~~-------------~~~--~l~~~l~~l~~L~~-~l~~n~~~~~~~~-~~~~l~~ 69 (181)
..+++|+.|++++|.+.+..|..+.. +.+ .+|..+.++++|+. ++++|.+.+.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 56677778888888777545543321 000 11223444455555 5555555542332 2444555
Q ss_pred CcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCcccc
Q 039018 70 PRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSG 149 (181)
Q Consensus 70 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~ 149 (181)
|++|++++|.+.+..|..+ . .+|+.|++++|+++ .+|..+.. +++|++|++++|+++
T Consensus 430 L~~L~l~~n~l~~~~~~~l-------~--~~L~~L~L~~N~l~-~ip~~~~~------------l~~L~~L~L~~N~l~- 486 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCL-------P--PKVKVLDLHNNRIM-SIPKDVTH------------LQALQELNVASNQLK- 486 (562)
T ss_dssp CCEEECCSSCCCGGGGSSC-------C--TTCSEEECCSSCCC-CCCTTTTS------------SCCCSEEECCSSCCC-
T ss_pred CCEEECCCCCCCcchhhhh-------c--CcCCEEECCCCcCc-ccChhhcC------------CCCCCEEECCCCCCC-
Confidence 5555555555443333222 1 45566666666555 55554444 566999999999999
Q ss_pred CCChhHHHhcccCCEeEecCCcccccC
Q 039018 150 VLPAELVTDLVALRSLNLFHNHFKEKF 176 (181)
Q Consensus 150 ~~p~~~~~~l~~L~~L~L~~n~l~~~~ 176 (181)
.+|...+..+++|+.|++++|++.++.
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 788773399999999999999998754
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=4.1e-16 Score=127.45 Aligned_cols=153 Identities=23% Similarity=0.209 Sum_probs=74.4
Q ss_pred CCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc-
Q 039018 4 NGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS- 81 (181)
Q Consensus 4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~- 81 (181)
..+..++.|+.++++++......+. ..+..+..++. +++.|.+.+..+..+..+++++.|++++|.+.
T Consensus 414 ~~~~~l~~L~~l~l~~~~~~~~~~~----------~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~ 483 (635)
T 4g8a_A 414 SNFLGLEQLEHLDFQHSNLKQMSEF----------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 483 (635)
T ss_dssp SCCTTCTTCCEEECTTSEEESTTSS----------CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred ccccccccccchhhhhccccccccc----------cccccccccccccccccccccccccccccchhhhhhhhhhccccc
Confidence 3444555555666555554432222 22334444444 55555555444444445555555555554432
Q ss_pred ccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEEEccCCcccc
Q 039018 82 QEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRITDRSKNNFSG 149 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l~l~~n~~~~ 149 (181)
...|..+ ..+++|+.|++++|++++..|..+..+++|++ .+.+| .+++|++|++++|++++
T Consensus 484 ~~~~~~~-------~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 484 NFLPDIF-------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp GEECSCC-------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred ccCchhh-------hhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 2233334 44555555555555555444444444333222 11111 13446666666666665
Q ss_pred CCChhHHHhc-ccCCEeEecCCcccc
Q 039018 150 VLPAELVTDL-VALRSLNLFHNHFKE 174 (181)
Q Consensus 150 ~~p~~~~~~l-~~L~~L~L~~n~l~~ 174 (181)
..|+.+ ..+ ++|+.|+|++|+++.
T Consensus 557 ~~~~~l-~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 557 SKKQEL-QHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCSSCT-TCCCTTCCEEECTTCCBCC
T ss_pred CCHHHH-HhhhCcCCEEEeeCCCCcc
Confidence 555544 555 456666666666653
No 91
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=1.5e-16 Score=110.93 Aligned_cols=133 Identities=18% Similarity=0.141 Sum_probs=109.3
Q ss_pred CCCCCcCCCeeeccCcccccccCccccccccccCCcccccc-cchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccc
Q 039018 5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLT-SLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQ 82 (181)
Q Consensus 5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~-~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 82 (181)
.+.++.+|+.|++++|.++ .+|. +..+. +|+. ++++|.+.+. ..+..+++|++|++++|.+.+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~------------~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~ 78 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN------------LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR 78 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC------------GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH------------hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc
Confidence 3567889999999999998 3332 44454 8999 9999999954 678999999999999999986
Q ss_pred cchhHhhhccCCCCCCCCccEEEcccccceeecCc--hhhcccccccccccccCCcccEEEccCCccccCCChh---HHH
Q 039018 83 EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA--CISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAE---LVT 157 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~--~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~---~~~ 157 (181)
..+..+ ..+++|+.|++++|.++ .+|. .+.. +++|+++++++|.++ .+|.. ++.
T Consensus 79 ~~~~~~-------~~l~~L~~L~L~~N~i~-~~~~~~~l~~------------l~~L~~L~l~~N~i~-~~~~~~~~~~~ 137 (176)
T 1a9n_A 79 IGEGLD-------QALPDLTELILTNNSLV-ELGDLDPLAS------------LKSLTYLCILRNPVT-NKKHYRLYVIY 137 (176)
T ss_dssp ECSCHH-------HHCTTCCEEECCSCCCC-CGGGGGGGGG------------CTTCCEEECCSSGGG-GSTTHHHHHHH
T ss_pred cCcchh-------hcCCCCCEEECCCCcCC-cchhhHhhhc------------CCCCCEEEecCCCCC-CcHhHHHHHHH
Confidence 655666 78899999999999997 6676 5666 455999999999998 67765 349
Q ss_pred hcccCCEeEecCCccc
Q 039018 158 DLVALRSLNLFHNHFK 173 (181)
Q Consensus 158 ~l~~L~~L~L~~n~l~ 173 (181)
.+++|+.|+++.|...
T Consensus 138 ~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 138 KVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HCTTCSEETTEECCHH
T ss_pred HCCccceeCCCcCCHH
Confidence 9999999999998764
No 92
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.66 E-value=6.3e-16 Score=118.27 Aligned_cols=121 Identities=20% Similarity=0.172 Sum_probs=67.4
Q ss_pred ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018 41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119 (181)
Q Consensus 41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~ 119 (181)
+..+++|+. ++++|.+.+.. . +..+++|++|++++|.+....+ + ..+++|+.|++++|.+++ + +.+
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~-~-~~~~~~L~~L~l~~n~l~~~~~--~-------~~l~~L~~L~l~~n~l~~-~-~~~ 261 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDIT-P-VANMTRLNSLKIGNNKITDLSP--L-------ANLSQLTWLEIGTNQISD-I-NAV 261 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECCSSCCCCCGG--G-------TTCTTCCEEECCSSCCCC-C-GGG
T ss_pred ccCCCccceeecccCCCCCCc-h-hhcCCcCCEEEccCCccCCCcc--h-------hcCCCCCEEECCCCccCC-C-hhH
Confidence 334444444 45555444221 1 4455555555555555543222 3 555566666666665542 2 335
Q ss_pred hccccccc-ccccc---------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccccc
Q 039018 120 SNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEK 175 (181)
Q Consensus 120 ~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 175 (181)
..+++|++ .+.+| .+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEECCSSSCCCC
T ss_pred hcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEccCCccccc
Confidence 55555555 33333 45667777777777775555555 7777777777777777744
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=6.2e-16 Score=116.12 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=115.8
Q ss_pred CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch
Q 039018 7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL 85 (181)
Q Consensus 7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 85 (181)
..+++|+.|++++|.+. .++ ++..+++|+. ++++|.+.+ ++. +..+++|++|++++|.+.. .+
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~------------~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~ 106 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQ------------GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS 106 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCT------------TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG
T ss_pred hhcCcccEEEccCCCcc-cCh------------hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch
Confidence 45778999999999998 223 3778899999 999999995 444 8999999999999999875 33
Q ss_pred hHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChhH
Q 039018 86 EIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAEL 155 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~~ 155 (181)
.+ ..+++|+.|++++|++++ + ..+..+++|++ .+.+| .+++|++|++++|.+++ ++. +
T Consensus 107 -~l-------~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~-~~~-l 174 (291)
T 1h6t_A 107 -SL-------KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IVP-L 174 (291)
T ss_dssp -GG-------TTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGG-G
T ss_pred -hh-------ccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc-chh-h
Confidence 36 899999999999999984 4 56888888888 55555 67789999999999984 444 5
Q ss_pred HHhcccCCEeEecCCcccccCC
Q 039018 156 VTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 156 ~~~l~~L~~L~L~~n~l~~~~p 177 (181)
..+++|+.|++++|.++ .+|
T Consensus 175 -~~l~~L~~L~L~~N~i~-~l~ 194 (291)
T 1h6t_A 175 -AGLTKLQNLYLSKNHIS-DLR 194 (291)
T ss_dssp -TTCTTCCEEECCSSCCC-BCG
T ss_pred -cCCCccCEEECCCCcCC-CCh
Confidence 88999999999999998 454
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=1.9e-15 Score=123.86 Aligned_cols=142 Identities=26% Similarity=0.267 Sum_probs=102.3
Q ss_pred CCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccccc
Q 039018 5 GPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQE 83 (181)
Q Consensus 5 ~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 83 (181)
.+..+++|+.|+|++|.+.+ ++ . +..+++|+. ++++|.+.+ ++ .+..+++|+.|++++|.+...
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~-~~-----------~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l 124 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTD-IK-----------P-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI 124 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCC-CG-----------G-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC
T ss_pred HHccCCCCCEEEeeCCCCCC-Ch-----------h-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC
Confidence 46777888888888888773 22 2 567777777 788887773 33 577778888888888877642
Q ss_pred chhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCCh
Q 039018 84 ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPA 153 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~ 153 (181)
+.+ ..+++|+.|++++|.+++. ..+..+++|++ .+.+| .+++|+.|++++|.++ .++
T Consensus 125 --~~l-------~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~-~l~- 191 (605)
T 1m9s_A 125 --NGL-------VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR- 191 (605)
T ss_dssp --GGG-------GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-BCG-
T ss_pred --ccc-------cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCC-CCh-
Confidence 335 6677788888887777633 55677777776 44444 5677889999999888 444
Q ss_pred hHHHhcccCCEeEecCCccccc
Q 039018 154 ELVTDLVALRSLNLFHNHFKEK 175 (181)
Q Consensus 154 ~~~~~l~~L~~L~L~~n~l~~~ 175 (181)
.+ ..+++|+.|+|++|.+++.
T Consensus 192 ~l-~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 192 AL-AGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GG-TTCTTCSEEECCSEEEECC
T ss_pred HH-ccCCCCCEEEccCCcCcCC
Confidence 45 8889999999999988743
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=1.5e-15 Score=112.42 Aligned_cols=140 Identities=17% Similarity=0.218 Sum_probs=82.5
Q ss_pred CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI 84 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 84 (181)
+..+++|+.|++++|.++ .++ ++..+++|+. ++++|.+.+ ++. +..+++|++|++++|.+.+ +
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~------------~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l 100 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA------------GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-L 100 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT------------TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-C
T ss_pred hhhcCcCcEEECcCCCcc-cch------------HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-c
Confidence 445667777777777766 222 2455566666 666666663 333 5666666666666666543 2
Q ss_pred hhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChh
Q 039018 85 LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAE 154 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~ 154 (181)
+.. .. .+|+.|++++|++++ ++ .+..+++|++ .+.+| .+++|++|++++|.+++. ..
T Consensus 101 ~~~--------~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~ 167 (263)
T 1xeu_A 101 NGI--------PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GG 167 (263)
T ss_dssp TTC--------CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TT
T ss_pred Ccc--------cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HH
Confidence 221 12 555555555555542 22 3444444444 23332 355688888888888843 44
Q ss_pred HHHhcccCCEeEecCCccccc
Q 039018 155 LVTDLVALRSLNLFHNHFKEK 175 (181)
Q Consensus 155 ~~~~l~~L~~L~L~~n~l~~~ 175 (181)
+ ..+++|+.|++++|.+++.
T Consensus 168 l-~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 168 L-TRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp S-TTCCCCCEEEEEEEEEECC
T ss_pred h-ccCCCCCEEeCCCCcccCC
Confidence 5 7888888888888888743
No 96
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.7e-16 Score=129.26 Aligned_cols=106 Identities=20% Similarity=0.158 Sum_probs=81.3
Q ss_pred chh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccc
Q 039018 47 LKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSAR 125 (181)
Q Consensus 47 L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l 125 (181)
|+. ++++|.++ .+|. ++.+++|+.|++++|.+. .+|..+ +.+++|+.|++++|.++ .+| .++.
T Consensus 443 L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~-------~~l~~L~~L~Ls~N~l~-~lp-~l~~---- 506 (567)
T 1dce_A 443 VRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPAL-------AALRCLEVLQASDNALE-NVD-GVAN---- 506 (567)
T ss_dssp CSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGG-------GGCTTCCEEECCSSCCC-CCG-GGTT----
T ss_pred ceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhh-------hcCCCCCEEECCCCCCC-CCc-ccCC----
Confidence 444 56667776 3565 777778888888888777 667777 77788888888888877 356 5665
Q ss_pred ccccccccCCcccEEEccCCccccCC-ChhHHHhcccCCEeEecCCcccccCC
Q 039018 126 KEVGYTSILNLLRITDRSKNNFSGVL-PAELVTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 126 ~~~~~~n~l~~L~~l~l~~n~~~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~p 177 (181)
+++|+.|++++|++++.. |..+ +.+++|+.|+|++|.+++..|
T Consensus 507 --------l~~L~~L~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 507 --------LPRLQELLLCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp --------CSSCCEEECCSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSS
T ss_pred --------CCCCcEEECCCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCcc
Confidence 556999999999999655 8888 999999999999999995433
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=8.3e-18 Score=130.74 Aligned_cols=125 Identities=20% Similarity=0.180 Sum_probs=89.9
Q ss_pred ccchh-cccccccc-CCCC---cccCCCCCCcEEEcCCCccccc-----chhHhhhccCCCCCCCCccEEEcccccce--
Q 039018 45 TSLKH-SISYNVLE-GKLP---TSFGRLREPRSISLSWANKSQE-----ILEIFHSFSRDNWTLRSLQILDIACNNLS-- 112 (181)
Q Consensus 45 ~~L~~-~l~~n~~~-~~~~---~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-- 112 (181)
++|+. ++++|.+. ...+ ..+..+++|++|++++|.+... .+..+ ..+++|+.|++++|.++
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l-------~~~~~L~~L~Ls~n~l~~~ 231 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-------AYCQELKVLDLQDNTFTHL 231 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-------GGCTTCCEEECCSSCCHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh-------hcCCCccEEECcCCCCCcH
Confidence 56666 66666665 2222 3445566777777777766521 12234 67888999999999885
Q ss_pred --eecCchhhccccccc-ccccc---------------c--CCcccEEEccCCcccc----CCChhHHHhcccCCEeEec
Q 039018 113 --GAIPACISNSSARKE-VGYTS---------------I--LNLLRITDRSKNNFSG----VLPAELVTDLVALRSLNLF 168 (181)
Q Consensus 113 --~~~p~~~~~~~~l~~-~~~~n---------------~--l~~L~~l~l~~n~~~~----~~p~~~~~~l~~L~~L~L~ 168 (181)
+.+|..+..+++|++ .+.+| . +++|++|++++|.+++ .+|..++..+++|++|+++
T Consensus 232 g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 467778888888888 55555 1 7889999999999986 3777775678999999999
Q ss_pred CCcccccC
Q 039018 169 HNHFKEKF 176 (181)
Q Consensus 169 ~n~l~~~~ 176 (181)
+|.+++..
T Consensus 312 ~N~l~~~~ 319 (386)
T 2ca6_A 312 GNRFSEED 319 (386)
T ss_dssp TSBSCTTS
T ss_pred CCcCCcch
Confidence 99998654
No 98
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=1.4e-16 Score=127.64 Aligned_cols=154 Identities=16% Similarity=0.089 Sum_probs=97.1
Q ss_pred CCCCcCCCeeeccCcccccccCc-cccc-------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcC
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPE-WISR-------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLS 76 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~-~~~~-------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~ 76 (181)
+..+++|+.|++++|.+.+..+. .+.. +.+..+ ..+++|+. ++++|.+.+..|..++.+++|++|+++
T Consensus 76 l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence 66778888888888887732211 1100 111111 12455666 677777766556666667777777777
Q ss_pred CCcccccchhHhhhccCCCC-CCCCccEEEcccccceeecCchhhccccccc-ccccc----------cCCcccEEEccC
Q 039018 77 WANKSQEILEIFHSFSRDNW-TLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------ILNLLRITDRSK 144 (181)
Q Consensus 77 ~n~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------~l~~L~~l~l~~ 144 (181)
+|.+.+..|..+ . .+++|+.|++++|.+++. |. ...+++|++ .+.+| .+++|+.|++++
T Consensus 153 ~N~l~~~~~~~l-------~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 153 LNEIDTVNFAEL-------AASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223 (487)
T ss_dssp TSCCCEEEGGGG-------GGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT
T ss_pred CCCCCCcChHHH-------hhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC
Confidence 777666555555 3 455566666666655533 22 223445555 33333 356799999999
Q ss_pred CccccCCChhHHHhcccCCEeEecCCccc
Q 039018 145 NNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 145 n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
|.++ .+|..+ ..+++|+.|++++|.+.
T Consensus 224 N~l~-~lp~~l-~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 224 NKLV-LIEKAL-RFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SCCC-EECTTC-CCCTTCCEEECTTCCBC
T ss_pred CcCc-ccchhh-ccCCCCCEEEcCCCCCc
Confidence 9999 578777 88999999999999987
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=8.7e-17 Score=134.33 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=102.0
Q ss_pred cCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeec
Q 039018 37 ISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAI 115 (181)
Q Consensus 37 l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 115 (181)
.+..+..+..|+. ++++|.+. .+|..+..+++|++|++++|.+. .+|..+ +.+.+|+.|+|++|.++ .+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-------~~l~~L~~L~Ls~N~l~-~l 285 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-------KNLSNLRVLDLSHNRLT-SL 285 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-------GGGTTCCEEECTTSCCS-SC
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-------hCCCCCCEEeCcCCcCC-cc
Confidence 4566788899999 99999998 78888889999999999999988 788888 89999999999999998 88
Q ss_pred CchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018 116 PACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 116 p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~ 179 (181)
|..++.++ +|++|++++|.++ .+|..+ +.+++|+.|+|++|.+++.+|..
T Consensus 286 p~~~~~l~------------~L~~L~L~~N~l~-~lp~~~-~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 286 PAELGSCF------------QLKYFYFFDNMVT-TLPWEF-GNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp CSSGGGGT------------TCSEEECCSSCCC-CCCSST-TSCTTCCCEECTTSCCCSHHHHH
T ss_pred ChhhcCCC------------CCCEEECCCCCCC-ccChhh-hcCCCccEEeCCCCccCCCChHH
Confidence 99888854 4999999999998 889887 99999999999999999877654
No 100
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.62 E-value=1.6e-15 Score=120.60 Aligned_cols=118 Identities=20% Similarity=0.282 Sum_probs=74.7
Q ss_pred ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018 41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119 (181)
Q Consensus 41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~ 119 (181)
+..+++|+. ++++|.+.+. +. +..+++|+.|++++|.+.+..+ + ..+++|+.|++++|++++..| +
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~-------~~l~~L~~L~L~~n~l~~~~~--~ 327 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--I-------SNLKNLTYLTLYFNNISDISP--V 327 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--G-------GGCTTCSEEECCSSCCSCCGG--G
T ss_pred hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--h-------cCCCCCCEEECcCCcCCCchh--h
Confidence 445556666 6666666532 22 5566666666666666554322 4 566777777777777764433 5
Q ss_pred hccccccc-ccccc---------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018 120 SNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 120 ~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~ 174 (181)
..+++|++ .+.+| .+++|+.|++++|++++..| + ..+++|+.|++++|.+++
T Consensus 328 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--L-ANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--G-TTCTTCCEEECCCEEEEC
T ss_pred ccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--h-hcCCCCCEEeccCCcccC
Confidence 56666666 44444 55667788888888775544 4 777888888888887774
No 101
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=105.77 Aligned_cols=115 Identities=22% Similarity=0.253 Sum_probs=97.5
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+. +.|+.|++++|.|+ .+|..+.++++|+. ++++|.++...+..|..+++|++|++++|.+
T Consensus 25 ip~~~~--~~l~~L~L~~n~i~------------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 25 LPKGIP--RDVTELYLDGNQFT------------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp CCSCCC--TTCCEEECCSSCCC------------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCC--CCCCEEECCCCcCc------------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 666653 68999999999998 34456788999999 9999999977778899999999999999999
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCcccc
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSG 149 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~ 149 (181)
....+..| ..+++|+.|++++|.+++..+..+..+ ++|+.+++++|.+..
T Consensus 91 ~~i~~~~f-------~~l~~L~~L~L~~N~l~~~~~~~~~~l------------~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 91 RCIPPRTF-------DGLKSLRLLSLHGNDISVVPEGAFNDL------------SALSHLAIGANPLYC 140 (193)
T ss_dssp CBCCTTTT-------TTCTTCCEEECCSSCCCBCCTTTTTTC------------TTCCEEECCSSCEEC
T ss_pred CEeCHHHh-------CCCCCCCEEECCCCCCCeeChhhhhcC------------ccccEEEeCCCCeec
Confidence 98777788 899999999999999984444457664 459999999999874
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=1.9e-15 Score=116.08 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=31.4
Q ss_pred CcccEEEccC-CccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018 135 NLLRITDRSK-NNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 135 ~~L~~l~l~~-n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~ 179 (181)
.+|+.+++++ |.++ .+|...|..+++|+.|++++|+++ .+|..
T Consensus 177 ~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~ 220 (350)
T 4ay9_X 177 TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSY 220 (350)
T ss_dssp EEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSS
T ss_pred cchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChh
Confidence 3477777764 5555 677665588888888898888888 67654
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=1.7e-15 Score=112.21 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=111.6
Q ss_pred CCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchh
Q 039018 8 NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILE 86 (181)
Q Consensus 8 ~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 86 (181)
++..+..+++++|.+++ ++ .+.++++|+. ++++|.+. .++ .+..+++|++|++++|.+.+..+
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~------------~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~- 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV------------SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP- 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE------------CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-
T ss_pred HHHHHHHHHhcCCCccc-cc------------chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-
Confidence 45677788899998872 22 3678899999 99999998 566 68899999999999999986544
Q ss_pred HhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChhHH
Q 039018 87 IFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAELV 156 (181)
Q Consensus 87 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~~~ 156 (181)
+ ..+++|+.|++++|+++ .+|.... ++|++ .+.+| .+++|++|++++|+++ .++ .+
T Consensus 81 -l-------~~l~~L~~L~L~~N~l~-~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~-~~~-~l- 146 (263)
T 1xeu_A 81 -L-------KDLTKLEELSVNRNRLK-NLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK-SIV-ML- 146 (263)
T ss_dssp -G-------TTCSSCCEEECCSSCCS-CCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCC-BCG-GG-
T ss_pred -h-------ccCCCCCEEECCCCccC-CcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCC-CCh-HH-
Confidence 7 89999999999999998 4554333 77777 55555 6778999999999998 455 56
Q ss_pred HhcccCCEeEecCCccccc
Q 039018 157 TDLVALRSLNLFHNHFKEK 175 (181)
Q Consensus 157 ~~l~~L~~L~L~~n~l~~~ 175 (181)
..+++|+.|++++|.+++.
T Consensus 147 ~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 147 GFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp GGCTTCCEEECTTSCCCBC
T ss_pred ccCCCCCEEECCCCcCcch
Confidence 8899999999999999853
No 104
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.61 E-value=4.2e-15 Score=113.71 Aligned_cols=149 Identities=22% Similarity=0.273 Sum_probs=107.3
Q ss_pred CCCCcCCCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCcE
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRS 72 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~ 72 (181)
+..+++|+.|++++|.+.+ ++. +.. ....++. +..+++|+. ++++|.+.. .+. +..+++|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~ 247 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD-LSP-LANLSQLTW 247 (347)
T ss_dssp GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCE
Confidence 5667778888888887763 332 211 0001111 667888888 899998884 443 788899999
Q ss_pred EEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-----------cCCcccEE
Q 039018 73 ISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-----------ILNLLRIT 140 (181)
Q Consensus 73 L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-----------~l~~L~~l 140 (181)
|++++|.+... +.+ ..+++|+.|++++|.+++ + +.+..+++|++ .+.+| .+++|++|
T Consensus 248 L~l~~n~l~~~--~~~-------~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 248 LEIGTNQISDI--NAV-------KDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp EECCSSCCCCC--GGG-------TTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred EECCCCccCCC--hhH-------hcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 99998887753 345 778888888888888873 3 45777888888 55555 67889999
Q ss_pred EccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 141 DRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 141 ~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
++++|.+++ ++. + ..+++|+.|++++|.++
T Consensus 317 ~L~~n~l~~-~~~-~-~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 317 FLSQNHITD-IRP-L-ASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSSCCC-CGG-G-GGCTTCSEESSSCC---
T ss_pred EccCCcccc-ccC-h-hhhhccceeehhhhccc
Confidence 999999995 443 5 89999999999999986
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=3.2e-17 Score=127.43 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=25.4
Q ss_pred cccccchh-ccccccccC----CCCcccCCCCCCcEEEcCCCcccc
Q 039018 42 GNLTSLKH-SISYNVLEG----KLPTSFGRLREPRSISLSWANKSQ 82 (181)
Q Consensus 42 ~~l~~L~~-~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~ 82 (181)
..+++|+. ++++|.+.. .++..+..+++|++|++++|.+..
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence 45666666 677766664 244555666666666666666643
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=3.9e-16 Score=118.84 Aligned_cols=149 Identities=14% Similarity=0.096 Sum_probs=94.7
Q ss_pred CCCCCCcCCCeeeccCcccccc-cCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCC-cc
Q 039018 4 NGPENLSSLRYLDLSDNQFNST-IPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWA-NK 80 (181)
Q Consensus 4 ~~~~~l~~L~~L~ls~n~i~~~-~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~ 80 (181)
..+.++++|+.|++++|.+.+. +| ..+..+++|++ ++++|.+.+..+..++.+++|++|++++| .+
T Consensus 87 ~~~~~~~~L~~L~L~~~~l~~~~~~-----------~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l 155 (336)
T 2ast_B 87 AEHFSPFRVQHMDLSNSVIEVSTLH-----------GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155 (336)
T ss_dssp CSCCCCBCCCEEECTTCEECHHHHH-----------HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC
T ss_pred hhhccCCCCCEEEccCCCcCHHHHH-----------HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC
Confidence 3455677788888888777632 33 33556777777 77777776666666777777777777777 45
Q ss_pred cc-cchhHhhhccCCCCCCCCccEEEcccc-cceee-cCchhhccc-cccc-ccccc--------------cCCcccEEE
Q 039018 81 SQ-EILEIFHSFSRDNWTLRSLQILDIACN-NLSGA-IPACISNSS-ARKE-VGYTS--------------ILNLLRITD 141 (181)
Q Consensus 81 ~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~-~p~~~~~~~-~l~~-~~~~n--------------~l~~L~~l~ 141 (181)
.+ .++..+ ..+++|+.|++++| .+++. ++..+..++ +|++ .+.+| .+++|++|+
T Consensus 156 ~~~~l~~~~-------~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 156 SEFALQTLL-------SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CHHHHHHHH-------HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CHHHHHHHH-------hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 54 245555 56677777777777 66643 455566666 6665 33332 455667777
Q ss_pred ccCCc-cccCCChhHHHhcccCCEeEecCCc
Q 039018 142 RSKNN-FSGVLPAELVTDLVALRSLNLFHNH 171 (181)
Q Consensus 142 l~~n~-~~~~~p~~~~~~l~~L~~L~L~~n~ 171 (181)
+++|. +++..+..+ ..+++|+.|++++|.
T Consensus 229 l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 229 LSDSVMLKNDCFQEF-FQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCTTCCGGGGGGG-GGCTTCCEEECTTCT
T ss_pred CCCCCcCCHHHHHHH-hCCCCCCEeeCCCCC
Confidence 77766 554455555 666677777776663
No 107
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.60 E-value=7.1e-15 Score=116.86 Aligned_cols=71 Identities=21% Similarity=0.143 Sum_probs=38.8
Q ss_pred ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018 41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119 (181)
Q Consensus 41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~ 119 (181)
++.+++|++ ++++|.+.+ ++ ++.+++|++|++++|.+.+. + + ..+++|+.|++++|++++ ++ +
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l-~--~-------~~l~~L~~L~l~~N~l~~-l~--l 144 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKL-D--V-------SQNPLLTYLNCARNTLTE-ID--V 144 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCC-C--C-------TTCTTCCEEECTTSCCSC-CC--C
T ss_pred cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCee-c--C-------CCCCcCCEEECCCCccce-ec--c
Confidence 455566666 666666653 22 55666666666666665532 2 3 555666666666666553 22 4
Q ss_pred hccccccc
Q 039018 120 SNSSARKE 127 (181)
Q Consensus 120 ~~~~~l~~ 127 (181)
+.+++|++
T Consensus 145 ~~l~~L~~ 152 (457)
T 3bz5_A 145 SHNTQLTE 152 (457)
T ss_dssp TTCTTCCE
T ss_pred ccCCcCCE
Confidence 44444444
No 108
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.60 E-value=1e-14 Score=115.96 Aligned_cols=148 Identities=18% Similarity=0.117 Sum_probs=93.5
Q ss_pred CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI 84 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 84 (181)
++.+++|+.|++++|.+++ ++ ++.+++|++ ++++|.+.+ ++ ++.+++|++|++++|.+.+..
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~-~~-------------~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~ 143 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTN-LD-------------VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEID 143 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC-CC-------------CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC
T ss_pred cccCCCCCEEECcCCCCce-ee-------------cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceec
Confidence 6777888888888888873 22 344555555 555555553 22 455555555555555544321
Q ss_pred hhHhhh----------cc--CCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc--------cCCcccEEEcc
Q 039018 85 LEIFHS----------FS--RDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS--------ILNLLRITDRS 143 (181)
Q Consensus 85 ~~~~~~----------~~--~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n--------~l~~L~~l~l~ 143 (181)
...+.. .. ..+..+++|+.|++++|++++ +| +..+++|++ .+.+| .+++|++|+++
T Consensus 144 l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCS 220 (457)
T ss_dssp CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECC
T ss_pred cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECc
Confidence 000000 00 012567788888888888874 45 667777777 44444 56778899999
Q ss_pred CCccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018 144 KNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 144 ~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 177 (181)
+|++++ +| + ..+++|+.|++++|.+++..+
T Consensus 221 ~N~l~~-ip--~-~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 221 SNKLTE-ID--V-TPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp SSCCSC-CC--C-TTCTTCSEEECCSSCCSCCCC
T ss_pred CCcccc-cC--c-cccCCCCEEEeeCCcCCCcCH
Confidence 999884 66 5 788889999999998886433
No 109
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=1.6e-15 Score=115.08 Aligned_cols=155 Identities=16% Similarity=0.088 Sum_probs=90.9
Q ss_pred CCCCcCCCeeeccCcccccccC-ccccc-------cccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcC
Q 039018 6 PENLSSLRYLDLSDNQFNSTIP-EWISR-------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLS 76 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p-~~~~~-------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~ 76 (181)
+..+++|++|++++|.+++..+ ..+.. +....+ ..+++|+. ++++|.+.+..+..+..+++|++|+++
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 5667777777777777763211 01100 111111 12445666 666666665555556666667777777
Q ss_pred CCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc----------cCCcccEEEccCC
Q 039018 77 WANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------ILNLLRITDRSKN 145 (181)
Q Consensus 77 ~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------~l~~L~~l~l~~n 145 (181)
+|.+.+..+..+. ..+++|+.|++++|.+++. +. ...+++|++ .+.+| .+++|++|++++|
T Consensus 153 ~N~l~~~~~~~~~------~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 153 LNEIDTVNFAELA------ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp TSCCCEEEGGGGG------GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred CCCCCcccHHHHh------hccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC
Confidence 6666654444431 1345555555555555422 22 112444444 33333 3566899999999
Q ss_pred ccccCCChhHHHhcccCCEeEecCCccc
Q 039018 146 NFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 146 ~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
+++ .+|..+ ..+++|+.|++++|.++
T Consensus 225 ~l~-~l~~~~-~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 225 KLV-LIEKAL-RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCC-EECTTC-CCCTTCCEEECTTCCCB
T ss_pred ccc-chhhHh-hcCCCCCEEEccCCCcc
Confidence 998 678777 88899999999999987
No 110
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.60 E-value=8e-15 Score=116.60 Aligned_cols=155 Identities=23% Similarity=0.232 Sum_probs=105.2
Q ss_pred CCCCcCCCeeeccCcccccccCccccc------c----ccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEE
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPEWISR------I----NCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSIS 74 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~------~----~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~ 74 (181)
+..+++|+.|++++|.+.+..|-.... + ...+ ..+..+++|+. ++++|.+.+..+ +..+++|+.|+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 271 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 271 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEE
Confidence 566777888888888777443311100 0 0011 23556677777 777777774332 67778888888
Q ss_pred cCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccC
Q 039018 75 LSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSK 144 (181)
Q Consensus 75 l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~ 144 (181)
+++|.+.+..+ + ..+++|+.|++++|++++. +. +..+++|++ .+.+| .+++|+.|++++
T Consensus 272 l~~n~l~~~~~--~-------~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 272 LGANQISNISP--L-------AGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 340 (466)
T ss_dssp CCSSCCCCCGG--G-------TTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCS
T ss_pred CCCCccCcccc--c-------cCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCC
Confidence 88887765433 5 7788888888888888743 33 677788877 55555 567788888888
Q ss_pred CccccCCChhHHHhcccCCEeEecCCcccccCC
Q 039018 145 NNFSGVLPAELVTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 145 n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 177 (181)
|.+++ + ..+ ..+++|+.|++++|.+++..|
T Consensus 341 n~l~~-~-~~l-~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 341 NKVSD-V-SSL-ANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SCCCC-C-GGG-TTCTTCCEEECCSSCCCBCGG
T ss_pred CccCC-c-hhh-ccCCCCCEEeCCCCccCccch
Confidence 88874 3 355 788889999999998886554
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=8.6e-15 Score=119.17 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=103.8
Q ss_pred CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhh
Q 039018 11 SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFH 89 (181)
Q Consensus 11 ~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 89 (181)
.|+.|++++|.++ .+|. ++.+++|+. ++++|.+. .+|..++.+++|+.|++++|.+.+ +| .+
T Consensus 442 ~L~~L~Ls~n~l~------------~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l- 504 (567)
T 1dce_A 442 DVRVLHLAHKDLT------------VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GV- 504 (567)
T ss_dssp TCSEEECTTSCCS------------SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GG-
T ss_pred CceEEEecCCCCC------------CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-cc-
Confidence 5889999999998 3334 788999999 99999999 889999999999999999999986 56 77
Q ss_pred hccCCCCCCCCccEEEcccccceeec-CchhhcccccccccccccCCcccEEEccCCccccCCCh--hHHHhcccCCEeE
Q 039018 90 SFSRDNWTLRSLQILDIACNNLSGAI-PACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA--ELVTDLVALRSLN 166 (181)
Q Consensus 90 ~~~~~~~~~~~L~~L~l~~n~i~~~~-p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~--~~~~~l~~L~~L~ 166 (181)
+.+++|+.|++++|.+++.. |..++.++ +|+.|++++|.+++..|. .++..+++|+.|+
T Consensus 505 ------~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~------------~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 505 ------ANLPRLQELLLCNNRLQQSAAIQPLVSCP------------RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp ------TTCSSCCEEECCSSCCCSSSTTGGGGGCT------------TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred ------CCCCCCcEEECCCCCCCCCCCcHHHhcCC------------CCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 89999999999999999665 88898854 499999999999965332 2336689999997
Q ss_pred e
Q 039018 167 L 167 (181)
Q Consensus 167 L 167 (181)
+
T Consensus 567 l 567 (567)
T 1dce_A 567 T 567 (567)
T ss_dssp C
T ss_pred C
Confidence 5
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=1.5e-16 Score=122.84 Aligned_cols=39 Identities=23% Similarity=0.096 Sum_probs=20.4
Q ss_pred CcccEEEccCCccccC----CChhHHHh-cccCCEeEecCCcccc
Q 039018 135 NLLRITDRSKNNFSGV----LPAELVTD-LVALRSLNLFHNHFKE 174 (181)
Q Consensus 135 ~~L~~l~l~~n~~~~~----~p~~~~~~-l~~L~~L~L~~n~l~~ 174 (181)
++|++|++++|.+++. ++..+ .. .++|+.|+|++|.+++
T Consensus 196 ~~L~~L~Ls~N~i~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 196 ASVTSLDLSANLLGLKSYAELAYIF-SSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHH-HHSCTTCCEEECCSSCCCC
T ss_pred CCCCEEECCCCCCChhHHHHHHHHH-hcCCCCceEEECcCCCCCc
Confidence 3566666666666532 22233 22 2356666666666653
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=5.8e-16 Score=117.91 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=117.4
Q ss_pred cCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCC-CCcccCCCCCCcEEEcCCCcccccchhH
Q 039018 10 SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK-LPTSFGRLREPRSISLSWANKSQEILEI 87 (181)
Q Consensus 10 ~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 87 (181)
+.++.+++++|.+.+..+ .+..+++|++ ++++|.+.+. ++..+..+++|++|++++|.+....+..
T Consensus 70 ~~l~~L~l~~n~l~~~~~------------~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 137 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA------------EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 137 (336)
T ss_dssp TTCSEEECTTCEECSCCC------------SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH
T ss_pred ccceEEEcCCccccccch------------hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH
Confidence 567777777777764333 2557889999 9999998755 7777889999999999999988888888
Q ss_pred hhhccCCCCCCCCccEEEcccc-ccee-ecCchhhccccccc-ccccc-------------cCC-cccEEEccCCc--cc
Q 039018 88 FHSFSRDNWTLRSLQILDIACN-NLSG-AIPACISNSSARKE-VGYTS-------------ILN-LLRITDRSKNN--FS 148 (181)
Q Consensus 88 ~~~~~~~~~~~~~L~~L~l~~n-~i~~-~~p~~~~~~~~l~~-~~~~n-------------~l~-~L~~l~l~~n~--~~ 148 (181)
+ ..+++|+.|++++| .+++ .++..+..+++|++ .+.+| .++ +|++|++++|. ++
T Consensus 138 l-------~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~ 210 (336)
T 2ast_B 138 L-------AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 210 (336)
T ss_dssp H-------TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred H-------hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC
Confidence 8 88999999999999 6775 36777888899888 44444 456 89999999994 44
Q ss_pred -cCCChhHHHhcccCCEeEecCCc-ccccCCCC
Q 039018 149 -GVLPAELVTDLVALRSLNLFHNH-FKEKFPGS 179 (181)
Q Consensus 149 -~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~ 179 (181)
+.++..+ ..+++|+.|++++|. +++..+..
T Consensus 211 ~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 211 KSDLSTLV-RRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HHHHHHHH-HHCTTCSEEECTTCTTCCGGGGGG
T ss_pred HHHHHHHH-hhCCCCCEEeCCCCCcCCHHHHHH
Confidence 2455555 889999999999998 66555543
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.58 E-value=3.1e-15 Score=121.64 Aligned_cols=150 Identities=21% Similarity=0.290 Sum_probs=92.3
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccc----------cccccCCcccccccchh-ccccccccCCCCcccCCCCCC
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISR----------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREP 70 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~----------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L 70 (181)
||..+. ++|+.|++++|.|+ .+|..+.. +. .+|. +.+ +|+. ++++|.+++ +|. .+++|
T Consensus 74 lp~~l~--~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L 142 (571)
T 3cvr_A 74 LPDNLP--PQITVLEITQNALI-SLPELPASLEYLDACDNRLS-TLPE-LPA--SLKHLDVDNNQLTM-LPE---LPALL 142 (571)
T ss_dssp CCSCCC--TTCSEEECCSSCCS-CCCCCCTTCCEEECCSSCCS-CCCC-CCT--TCCEEECCSSCCSC-CCC---CCTTC
T ss_pred cCHhHc--CCCCEEECcCCCCc-ccccccCCCCEEEccCCCCC-Ccch-hhc--CCCEEECCCCcCCC-CCC---cCccc
Confidence 455442 56777777777766 44421111 11 1333 332 5555 666666663 444 45666
Q ss_pred cEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccccCC-------cc-----
Q 039018 71 RSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTSILN-------LL----- 137 (181)
Q Consensus 71 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n~l~-------~L----- 137 (181)
++|++++|.+.+ +|. .+++|+.|++++|+++ .+|. +. ++|++ .+.+|.+. +|
T Consensus 143 ~~L~Ls~N~l~~-lp~----------~l~~L~~L~Ls~N~L~-~lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~ 207 (571)
T 3cvr_A 143 EYINADNNQLTM-LPE----------LPTSLEVLSVRNNQLT-FLPE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEE 207 (571)
T ss_dssp CEEECCSSCCSC-CCC----------CCTTCCEEECCSSCCS-CCCC-CC--TTCCEEECCSSCCSSCCCCC--------
T ss_pred cEEeCCCCccCc-CCC----------cCCCcCEEECCCCCCC-Ccch-hh--CCCCEEECcCCCCCchhhHHHhhhcccc
Confidence 666666666553 222 3456777777777776 3565 44 56666 45555222 45
Q ss_pred --cEEEccCCccccCCChhHHHhcccCCEeEecCCcccccCCCC
Q 039018 138 --RITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPGS 179 (181)
Q Consensus 138 --~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~ 179 (181)
+.|++++|.++ .+|..+ ..+++|+.|+|++|.+++.+|..
T Consensus 208 ~L~~L~Ls~N~l~-~lp~~l-~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 208 TEIFFRCRENRIT-HIPENI-LSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CCEEEECCSSCCC-CCCGGG-GGSCTTEEEECCSSSCCHHHHHH
T ss_pred cceEEecCCCcce-ecCHHH-hcCCCCCEEEeeCCcCCCcCHHH
Confidence 89999999999 789888 67999999999999998877654
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=7.4e-15 Score=120.34 Aligned_cols=141 Identities=18% Similarity=0.255 Sum_probs=116.1
Q ss_pred CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccch
Q 039018 7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEIL 85 (181)
Q Consensus 7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 85 (181)
..+++|+.|++++|.+. .++ .+..+++|+. ++++|.+.+. +. +..+++|+.|++++|.+.. ++
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~------------~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~-l~ 103 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQ------------GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKD-LS 103 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCT------------TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CT
T ss_pred hcCCCCCEEECcCCCCC-CCh------------HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCC-Ch
Confidence 45788999999999998 233 3788999999 9999999954 43 8999999999999999874 33
Q ss_pred hHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc---------cCCcccEEEccCCccccCCChhH
Q 039018 86 EIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS---------ILNLLRITDRSKNNFSGVLPAEL 155 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n---------~l~~L~~l~l~~n~~~~~~p~~~ 155 (181)
.+ ..+++|+.|++++|.+++ + ..+..+++|++ .+.+| .+++|+.|++++|.+.+..| +
T Consensus 104 -~l-------~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l 171 (605)
T 1m9s_A 104 -SL-------KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--L 171 (605)
T ss_dssp -TS-------TTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred -hh-------ccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--h
Confidence 55 889999999999999984 4 45888999988 55555 67889999999999985433 5
Q ss_pred HHhcccCCEeEecCCcccccCC
Q 039018 156 VTDLVALRSLNLFHNHFKEKFP 177 (181)
Q Consensus 156 ~~~l~~L~~L~L~~n~l~~~~p 177 (181)
..+++|+.|+|++|.+++ +|
T Consensus 172 -~~l~~L~~L~Ls~N~i~~-l~ 191 (605)
T 1m9s_A 172 -AGLTKLQNLYLSKNHISD-LR 191 (605)
T ss_dssp -TTCTTCCEEECCSSCCCB-CG
T ss_pred -ccCCCCCEEECcCCCCCC-Ch
Confidence 899999999999999984 44
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=7.2e-15 Score=99.51 Aligned_cols=110 Identities=20% Similarity=0.209 Sum_probs=93.6
Q ss_pred cccchh-cccccccc-CCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhc
Q 039018 44 LTSLKH-SISYNVLE-GKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISN 121 (181)
Q Consensus 44 l~~L~~-~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~ 121 (181)
.++++. ++++|.+. +.+|..+..+++|++|++++|.+.+. ..+ ..+++|+.|++++|.+++.+|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~-------~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL-------PKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC-------CCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh-------hcCCCCCEEECCCCcccchHHHHhhh
Confidence 467788 89999998 77888889999999999999998765 556 88999999999999999668887776
Q ss_pred ccccccccccccCCcccEEEccCCccccC-CChhHHHhcccCCEeEecCCccccc
Q 039018 122 SSARKEVGYTSILNLLRITDRSKNNFSGV-LPAELVTDLVALRSLNLFHNHFKEK 175 (181)
Q Consensus 122 ~~~l~~~~~~n~l~~L~~l~l~~n~~~~~-~p~~~~~~l~~L~~L~L~~n~l~~~ 175 (181)
++ +|++|++++|.+++. .+..+ ..+++|+.|++++|.+++.
T Consensus 87 l~------------~L~~L~ls~N~i~~~~~~~~~-~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 87 CP------------NLTHLNLSGNKIKDLSTIEPL-KKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp CT------------TCCEEECTTSCCCSHHHHGGG-GGCTTCCEEECTTCGGGGS
T ss_pred CC------------CCCEEECCCCcCCChHHHHHH-hhCCCCCEEeCcCCcccch
Confidence 44 499999999999842 23566 8999999999999999953
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=4.9e-15 Score=102.34 Aligned_cols=118 Identities=23% Similarity=0.215 Sum_probs=98.7
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+..+++|+.|++++|.+++. ..+..+++|+. ++++|.+.+.+|..+..+++|++|++++|.+
T Consensus 41 i~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 107 (168)
T 2ell_A 41 IEGLTAEFVNLEFLSLINVGLISV-------------SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107 (168)
T ss_dssp CSSCCGGGGGCCEEEEESSCCCCC-------------SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSC
T ss_pred HHHHHHhCCCCCEEeCcCCCCCCh-------------hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCcc
Confidence 678889999999999999999832 34778999999 9999999976888777899999999999998
Q ss_pred cccc-hhHhhhccCCCCCCCCccEEEcccccceeecCc----hhhcccccccccccccCCcccEEEccCCccccCCCh
Q 039018 81 SQEI-LEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA----CISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA 153 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~----~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~ 153 (181)
.+.. +..+ ..+++|+.|++++|.++ ..|. .+.. +++|++|++++|.+. .+|.
T Consensus 108 ~~~~~~~~l-------~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~------------l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 108 KDISTLEPL-------KKLECLKSLDLFNCEVT-NLNDYRESVFKL------------LPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CSSGGGGGG-------SSCSCCCEEECCSSGGG-TSTTHHHHHHTT------------CSSCCEETTEETTSC-BCCS
T ss_pred CcchhHHHH-------hcCCCCCEEEeeCCcCc-chHHHHHHHHHh------------CccCcEecCCCCChh-hccc
Confidence 7542 2677 89999999999999998 4454 5666 455999999999987 5664
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=2.7e-14 Score=99.43 Aligned_cols=119 Identities=23% Similarity=0.269 Sum_probs=95.4
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+ .++|+.|++++|++. .+|. ..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+
T Consensus 22 ~p~~~--~~~l~~L~l~~n~l~-~~~~----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 22 VPTGI--PSSATRLELESNKLQ-SLPH----------GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp CCTTC--CTTCSEEECCSSCCC-CCCT----------TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCC--CCCCcEEEeCCCccc-EeCH----------HHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 45544 368999999999998 3332 34678899999 9999999966666678999999999999999
Q ss_pred cccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCC
Q 039018 81 SQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLP 152 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p 152 (181)
.+..+..+ ..+++|+.|++++|.+++..+..+.. +++|+++++++|.+.+..|
T Consensus 89 ~~~~~~~~-------~~l~~L~~L~l~~N~l~~~~~~~~~~------------l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 89 QSLPNGVF-------DKLTQLKELALDTNQLKSVPDGIFDR------------LTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCTTTT-------TTCTTCCEEECCSSCCSCCCTTTTTT------------CTTCCEEECCSSCBCCCHH
T ss_pred cccCHHHh-------hCCcccCEEECcCCcceEeCHHHhcC------------CcccCEEEecCCCeeccCc
Confidence 87666677 88999999999999998433344565 4459999999999986544
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=5.2e-15 Score=117.55 Aligned_cols=141 Identities=23% Similarity=0.279 Sum_probs=59.2
Q ss_pred CCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCC-------------cE
Q 039018 7 ENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREP-------------RS 72 (181)
Q Consensus 7 ~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L-------------~~ 72 (181)
.+.++|+.+++++|.+. .+| ++++++++|+. ++++|.+.+.+|..++.+++| ++
T Consensus 8 ~~~~~L~~L~l~~n~l~-~iP-----------~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~ 75 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNLT-EMP-----------VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75 (454)
T ss_dssp --------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSE
T ss_pred cccccchhhhcccCchh-hCC-----------hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCE
Confidence 35677888888888884 455 34556666666 666666665666666555543 55
Q ss_pred EEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-------cCCcccEEEccC
Q 039018 73 ISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-------ILNLLRITDRSK 144 (181)
Q Consensus 73 L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-------~l~~L~~l~l~~ 144 (181)
|++++|.+.+ +|. ..++|+.|++++|.+++ +|..+ ++|++ .+.+| ..++|++|++++
T Consensus 76 L~l~~~~l~~-lp~----------~~~~L~~L~l~~n~l~~-lp~~~---~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~ 140 (454)
T 1jl5_A 76 LELNNLGLSS-LPE----------LPPHLESLVASCNSLTE-LPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSN 140 (454)
T ss_dssp EECTTSCCSC-CCS----------CCTTCSEEECCSSCCSS-CCCCC---TTCCEEECCSSCCSCCCSCCTTCCEEECCS
T ss_pred EEecCCcccc-CCC----------CcCCCCEEEccCCcCCc-ccccc---CCCcEEECCCCccCcccCCCCCCCEEECcC
Confidence 6666555442 111 11345555555555542 44322 23333 22222 113466666666
Q ss_pred CccccCCChhHHHhcccCCEeEecCCcccccCCC
Q 039018 145 NNFSGVLPAELVTDLVALRSLNLFHNHFKEKFPG 178 (181)
Q Consensus 145 n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~ 178 (181)
|.++ .+| .+ +.+++|++|++++|.++ .+|.
T Consensus 141 n~l~-~lp-~~-~~l~~L~~L~l~~N~l~-~lp~ 170 (454)
T 1jl5_A 141 NQLE-KLP-EL-QNSSFLKIIDVDNNSLK-KLPD 170 (454)
T ss_dssp SCCS-SCC-CC-TTCTTCCEEECCSSCCS-CCCC
T ss_pred CCCC-CCc-cc-CCCCCCCEEECCCCcCc-ccCC
Confidence 6666 355 34 66666666666666666 3544
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=5e-17 Score=115.44 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=47.4
Q ss_pred cCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHh
Q 039018 10 SSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIF 88 (181)
Q Consensus 10 ~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 88 (181)
..++.++++++.+.+..|.-- .+|..+..+++|+. ++++|.+.+ +| .+..+++|++|++++|.+. .+|..+
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~-----~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIE-----KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCC-----CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred ccccCcchheeEeccccCcHh-----hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 345555555555554444211 23334555666666 666666653 44 5555666666666666555 344444
Q ss_pred hhccCCCCCCCCccEEEcccccce
Q 039018 89 HSFSRDNWTLRSLQILDIACNNLS 112 (181)
Q Consensus 89 ~~~~~~~~~~~~L~~L~l~~n~i~ 112 (181)
..+++|+.|++++|+++
T Consensus 90 -------~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 90 -------AVADTLEELWISYNQIA 106 (198)
T ss_dssp -------HHHHHCSEEEEEEEECC
T ss_pred -------hcCCcCCEEECcCCcCC
Confidence 44456666666666665
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=7.1e-17 Score=114.66 Aligned_cols=133 Identities=19% Similarity=0.208 Sum_probs=107.8
Q ss_pred CCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018 3 PNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS 81 (181)
Q Consensus 3 p~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 81 (181)
|..+..+++|+.|++++|.+.+ + | .+..+++|+. ++++|.+. .+|..+..+++|++|++++|.+.
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~-l-----------~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEK-I-----------S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESC-C-----------C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC
T ss_pred hHHHhcCCCCCEEECCCCCCcc-c-----------c-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC
Confidence 3378889999999999999983 3 3 4788999999 99999999 78887788899999999999988
Q ss_pred ccchhHhhhccCCCCCCCCccEEEcccccceeecCc--hhhcccccccccccccCCcccEEEccCCccccCCCh------
Q 039018 82 QEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPA--CISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA------ 153 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~--~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~------ 153 (181)
+ +| .+ ..+++|+.|++++|+++ .++. .+.. +++|+++++++|.+.+..|.
T Consensus 107 ~-l~-~~-------~~l~~L~~L~l~~N~i~-~~~~~~~l~~------------l~~L~~L~l~~N~l~~~~~~~~~~~~ 164 (198)
T 1ds9_A 107 S-LS-GI-------EKLVNLRVLYMSNNKIT-NWGEIDKLAA------------LDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp C-HH-HH-------HHHHHSSEEEESEEECC-CHHHHHHHTT------------TTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred c-CC-cc-------ccCCCCCEEECCCCcCC-chhHHHHHhc------------CCCCCEEEecCCccccccccccchHH
Confidence 5 44 56 78899999999999997 4333 5555 45599999999999765443
Q ss_pred ---hHHHhcccCCEeEecCCccc
Q 039018 154 ---ELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 154 ---~~~~~l~~L~~L~L~~n~l~ 173 (181)
.++..+++|+.|+ +|.++
T Consensus 165 ~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHhCCCcEEEC--CcccC
Confidence 2348899999987 67766
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.52 E-value=2e-13 Score=108.43 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=11.8
Q ss_pred CCCCCcCCCeeeccCcccc
Q 039018 5 GPENLSSLRYLDLSDNQFN 23 (181)
Q Consensus 5 ~~~~l~~L~~L~ls~n~i~ 23 (181)
++.++++|++|++++|+++
T Consensus 148 ~~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp CCTTCTTCCEEECCSSCCS
T ss_pred ccCCCCCCCEEECCCCcCc
Confidence 3566666666666666665
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=3.4e-14 Score=109.15 Aligned_cols=156 Identities=18% Similarity=0.095 Sum_probs=111.4
Q ss_pred CCCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCC-cccCCCCCCcE-EEcCC
Q 039018 1 PIPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLP-TSFGRLREPRS-ISLSW 77 (181)
Q Consensus 1 ~lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~-~~~~~l~~L~~-L~l~~ 77 (181)
+||..+ .++++.|++++|+|+ .+|+ ..|.++++|++ ++++|.+.+.+| ..|.+++++.. +.+..
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~-~i~~----------~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLR-VIQK----------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCS-EECT----------TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred ccCcCc--CCCCCEEEccCCcCC-CcCH----------HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 367666 367899999999998 4443 35788899999 999998765554 45778888765 55667
Q ss_pred CcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-------------cCCcccEEEcc
Q 039018 78 ANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-------------ILNLLRITDRS 143 (181)
Q Consensus 78 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-------------~l~~L~~l~l~ 143 (181)
|.+....|..| ..+++|+.+++++|++++..+..+.....+.. .+..+ ....++.|+++
T Consensus 90 N~l~~l~~~~f-------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 90 NNLLYINPEAF-------QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp TTCCEECTTSB-------CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred CcccccCchhh-------hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 88877767778 88999999999999998444444444444444 22221 22357889999
Q ss_pred CCccccCCChhHHHhcccCCEeEecC-CcccccCCCC
Q 039018 144 KNNFSGVLPAELVTDLVALRSLNLFH-NHFKEKFPGS 179 (181)
Q Consensus 144 ~n~~~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~p~~ 179 (181)
+|+++ .++... ....+|+.+++++ |.++ .+|+.
T Consensus 163 ~N~i~-~i~~~~-f~~~~L~~l~l~~~n~l~-~i~~~ 196 (350)
T 4ay9_X 163 KNGIQ-EIHNSA-FNGTQLDELNLSDNNNLE-ELPND 196 (350)
T ss_dssp SSCCC-EECTTS-STTEEEEEEECTTCTTCC-CCCTT
T ss_pred ccccc-CCChhh-ccccchhHHhhccCCccc-CCCHH
Confidence 99998 677666 4567899999986 5555 78763
No 124
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=6.4e-14 Score=97.11 Aligned_cols=107 Identities=20% Similarity=0.181 Sum_probs=84.5
Q ss_pred CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhh
Q 039018 11 SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFH 89 (181)
Q Consensus 11 ~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 89 (181)
..+.+++++|.++ .+|+ .+ .+.++. ++++|.+.+..|..+..+++|++|++++|.+.+..+..|
T Consensus 10 ~~~~l~~s~n~l~-~ip~-----------~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f- 74 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPT-----------GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF- 74 (170)
T ss_dssp ETTEEECTTSCCS-SCCS-----------CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT-
T ss_pred CCCEEEeCCCCcC-ccCc-----------cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc-
Confidence 4678999999998 4453 33 267777 899999997778888999999999999999887666667
Q ss_pred hccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccC
Q 039018 90 SFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGV 150 (181)
Q Consensus 90 ~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~ 150 (181)
..+++|+.|++++|++++..+..+..+ ++|++|++++|.+...
T Consensus 75 ------~~l~~L~~L~L~~N~l~~~~~~~~~~l------------~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 75 ------DKLTQLTQLSLNDNQLKSIPRGAFDNL------------KSLTHIWLLNNPWDCA 117 (170)
T ss_dssp ------TTCTTCCEEECCSSCCCCCCTTTTTTC------------TTCCEEECCSSCBCTT
T ss_pred ------cCCCCCCEEECCCCccCEeCHHHhcCC------------CCCCEEEeCCCCCCCC
Confidence 788999999999999985444557764 4489999999988743
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=1.1e-13 Score=112.52 Aligned_cols=129 Identities=21% Similarity=0.282 Sum_probs=73.4
Q ss_pred CCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhh
Q 039018 11 SLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFH 89 (181)
Q Consensus 11 ~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 89 (181)
+|+.|++++|.+++ +|..+ .++|+. ++++|.+. .+| ..+++|++|++++|.+.+ +|. +
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-------------~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l- 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-------------PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L- 118 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-------------CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C-
T ss_pred CccEEEeCCCCCCc-cCHhH-------------cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h-
Confidence 89999999999984 66532 145666 67777766 555 345677777777776664 444 4
Q ss_pred hccCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-------cCCcccEEEccCCccccCCChhHHHhccc
Q 039018 90 SFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-------ILNLLRITDRSKNNFSGVLPAELVTDLVA 161 (181)
Q Consensus 90 ~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~ 161 (181)
.. +|+.|++++|.+++ +|. .+++|++ .+.+| .+++|++|++++|.++ .+|. + . ++
T Consensus 119 ------~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~-~lp~-l-~--~~ 181 (571)
T 3cvr_A 119 ------PA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLT-FLPE-L-P--ES 181 (571)
T ss_dssp ------CT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC-C-C--TT
T ss_pred ------hc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCC-Ccch-h-h--CC
Confidence 32 55555555555552 444 3444444 33333 1234555555555555 2444 3 3 55
Q ss_pred CCEeEecCCcccccCCC
Q 039018 162 LRSLNLFHNHFKEKFPG 178 (181)
Q Consensus 162 L~~L~L~~n~l~~~~p~ 178 (181)
|+.|+|++|.++ .+|.
T Consensus 182 L~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 182 LEALDVSTNLLE-SLPA 197 (571)
T ss_dssp CCEEECCSSCCS-SCCC
T ss_pred CCEEECcCCCCC-chhh
Confidence 555555555555 4444
No 126
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=1.2e-13 Score=95.79 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=80.3
Q ss_pred hh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccc
Q 039018 48 KH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK 126 (181)
Q Consensus 48 ~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~ 126 (181)
+. ++++|.+. .+|..+. +++++|++++|.+.+..|..+ ..+.+|+.|++++|++++..+..+..
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~-------~~l~~L~~L~Ls~N~l~~l~~~~f~~----- 76 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVF-------DRLTQLTRLDLDNNQLTVLPAGVFDK----- 76 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTT-------TTCTTCSEEECCSSCCCCCCTTTTTT-----
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhh-------cCcccCCEEECCCCCcCccChhhccC-----
Confidence 44 78888887 5776553 788899999998887777777 88889999999999888444445566
Q ss_pred cccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccccc
Q 039018 127 EVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEK 175 (181)
Q Consensus 127 ~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 175 (181)
+++|++|++++|+++ .+|...|..+++|+.|+|++|.++..
T Consensus 77 -------l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 77 -------LTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp -------CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred -------CCCCCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 444888999999888 45544338888899999999888754
No 127
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=1.5e-13 Score=95.61 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=82.4
Q ss_pred CCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhh
Q 039018 12 LRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHS 90 (181)
Q Consensus 12 L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 90 (181)
-+.+++++|+++ .+|. .+. +.|+. ++++|.+.+..|..+..+++|++|++++|.+.+..+..|
T Consensus 14 ~~~l~~~~n~l~-~iP~-----------~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~-- 77 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPA-----------GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF-- 77 (174)
T ss_dssp SSEEECCSSCCS-SCCS-----------CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--
T ss_pred CcEEEeCCCCCC-ccCC-----------CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHh--
Confidence 367899999987 4554 332 67777 899999987778888899999999999998886555566
Q ss_pred ccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCccccCCCh
Q 039018 91 FSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA 153 (181)
Q Consensus 91 ~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~ 153 (181)
..+.+|+.|++++|++++..+..+..+ ++|++|++++|.+. ..+.
T Consensus 78 -----~~l~~L~~L~L~~N~l~~l~~~~~~~l------------~~L~~L~L~~N~~~-c~~~ 122 (174)
T 2r9u_A 78 -----DKLTQLTQLDLNDNHLKSIPRGAFDNL------------KSLTHIYLYNNPWD-CECR 122 (174)
T ss_dssp -----TTCTTCCEEECCSSCCCCCCTTTTTTC------------TTCSEEECCSSCBC-TTBG
T ss_pred -----CCcchhhEEECCCCccceeCHHHhccc------------cCCCEEEeCCCCcc-cccc
Confidence 788999999999999984333446664 44889999999887 4444
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=1e-13 Score=96.48 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=86.0
Q ss_pred ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccccc
Q 039018 50 SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVG 129 (181)
Q Consensus 50 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~ 129 (181)
++++|.+. .+|..+. ++|++|++++|.+.+..|..+ ..+++|+.|++++|++++..+..+..
T Consensus 18 ~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~-------~~l~~L~~L~Ls~N~l~~i~~~~~~~-------- 79 (174)
T 2r9u_A 18 NCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVF-------DHLVNLQQLYFNSNKLTAIPTGVFDK-------- 79 (174)
T ss_dssp ECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTT-------TTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred EeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHh-------cCCcCCCEEECCCCCCCccChhHhCC--------
Confidence 78899887 7787664 899999999999998878888 89999999999999999443344566
Q ss_pred ccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCcccc
Q 039018 130 YTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 130 ~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~ 174 (181)
+++|++|++++|+++ .+|...+..+++|+.|+|++|.+..
T Consensus 80 ----l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 80 ----LTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ----CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ----cchhhEEECCCCccc-eeCHHHhccccCCCEEEeCCCCccc
Confidence 445999999999999 5666534999999999999999984
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=1.4e-13 Score=95.74 Aligned_cols=112 Identities=16% Similarity=0.071 Sum_probs=91.4
Q ss_pred ccccccchh-ccccccccCCCCcccCCCC-CCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018 41 LGNLTSLKH-SISYNVLEGKLPTSFGRLR-EPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC 118 (181)
Q Consensus 41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~ 118 (181)
+.++.+|+. ++++|.+. .++. +..+. +|++|++++|.+.+. ..+ ..+++|+.|++++|.+++..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l-------~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGF-------PLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCC-------CCCSSCCEEECCSSCCCEECSCH
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--ccc-------ccCCCCCEEECCCCcccccCcch
Confidence 567888899 99999999 5555 55544 999999999998864 556 88999999999999999443344
Q ss_pred hhcccccccccccccCCcccEEEccCCccccCCCh--hHHHhcccCCEeEecCCcccccCCC
Q 039018 119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPA--ELVTDLVALRSLNLFHNHFKEKFPG 178 (181)
Q Consensus 119 ~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~p~ 178 (181)
+..+ ++|++|++++|.+. .+|. .+ ..+++|+.|++++|.++ .+|.
T Consensus 84 ~~~l------------~~L~~L~L~~N~i~-~~~~~~~l-~~l~~L~~L~l~~N~i~-~~~~ 130 (176)
T 1a9n_A 84 DQAL------------PDLTELILTNNSLV-ELGDLDPL-ASLKSLTYLCILRNPVT-NKKH 130 (176)
T ss_dssp HHHC------------TTCCEEECCSCCCC-CGGGGGGG-GGCTTCCEEECCSSGGG-GSTT
T ss_pred hhcC------------CCCCEEECCCCcCC-cchhhHhh-hcCCCCCEEEecCCCCC-CcHh
Confidence 5764 45999999999997 6776 56 89999999999999998 5665
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=8.5e-15 Score=112.96 Aligned_cols=157 Identities=18% Similarity=0.123 Sum_probs=91.0
Q ss_pred CCcCCCeeeccCcccccccCccccccccccCCcccccc-cchh-ccccccccCCCCcccCCC-----CCCcEEEcCCCcc
Q 039018 8 NLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLT-SLKH-SISYNVLEGKLPTSFGRL-----REPRSISLSWANK 80 (181)
Q Consensus 8 ~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~-~L~~-~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~ 80 (181)
..++|+.|++++|.+.+..+..+ ...+..++ +|++ ++++|.+.+..+..+..+ ++|++|++++|.+
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l-------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVEL-------IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHH-------HHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred CCCCceEEEccCCCCChHHHHHH-------HHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 34457888888888774444211 13345555 6666 777777765555555543 6777777777776
Q ss_pred cccchhHhhhccCCCCCC-CCccEEEcccccceeecCchhhc-----cccccc-ccccc---------------cC-Ccc
Q 039018 81 SQEILEIFHSFSRDNWTL-RSLQILDIACNNLSGAIPACISN-----SSARKE-VGYTS---------------IL-NLL 137 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~p~~~~~-----~~~l~~-~~~~n---------------~l-~~L 137 (181)
....+..+.... ..+ .+|+.|++++|.+++..+..+.. .++|++ .+.+| .. ++|
T Consensus 93 ~~~~~~~l~~~l---~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 93 SYKSSDELVKTL---AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp GGSCHHHHHHHH---HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ChHHHHHHHHHH---HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 655554331110 233 56777777777766443333332 245666 44444 12 267
Q ss_pred cEEEccCCccccCCChhHH---Hhc-ccCCEeEecCCcccc
Q 039018 138 RITDRSKNNFSGVLPAELV---TDL-VALRSLNLFHNHFKE 174 (181)
Q Consensus 138 ~~l~l~~n~~~~~~p~~~~---~~l-~~L~~L~L~~n~l~~ 174 (181)
++|++++|.+++..+..+. ..+ ++|+.|+|++|.+++
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 7888888877755554431 223 477888888877764
No 131
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.48 E-value=6.3e-16 Score=122.35 Aligned_cols=130 Identities=17% Similarity=0.080 Sum_probs=86.9
Q ss_pred ccccchh-ccccccccCC----CCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceee---
Q 039018 43 NLTSLKH-SISYNVLEGK----LPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGA--- 114 (181)
Q Consensus 43 ~l~~L~~-~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~--- 114 (181)
.+++|+. ++++|.++.. ++..+..+++|++|++++|.+....+..+..... ...++|+.|++++|.+++.
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~--~~~~~L~~L~L~~n~l~~~~~~ 331 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL--EPGCQLESLWVKSCSFTAACCS 331 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT--STTCCCCEEECTTSCCBGGGHH
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc--cCCccceeeEcCCCCCchHHHH
Confidence 3556666 6777666632 4455555677777777777665443333311100 1235788888888877643
Q ss_pred -cCchhhccccccc-ccccc----------------cCCcccEEEccCCcccc----CCChhHHHhcccCCEeEecCCcc
Q 039018 115 -IPACISNSSARKE-VGYTS----------------ILNLLRITDRSKNNFSG----VLPAELVTDLVALRSLNLFHNHF 172 (181)
Q Consensus 115 -~p~~~~~~~~l~~-~~~~n----------------~l~~L~~l~l~~n~~~~----~~p~~~~~~l~~L~~L~L~~n~l 172 (181)
++..+..+++|++ .+.+| ..++|++|++++|.+++ .+|..+ ..+++|+.|++++|.+
T Consensus 332 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL-LANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH-HHCCCCCEEECCSSSC
T ss_pred HHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH-HhCCCccEEECCCCCC
Confidence 4556677788888 55555 15689999999999885 567666 7889999999999998
Q ss_pred ccc
Q 039018 173 KEK 175 (181)
Q Consensus 173 ~~~ 175 (181)
++.
T Consensus 411 ~~~ 413 (461)
T 1z7x_W 411 GDA 413 (461)
T ss_dssp CHH
T ss_pred CHH
Confidence 753
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.48 E-value=1.4e-13 Score=113.09 Aligned_cols=75 Identities=24% Similarity=0.236 Sum_probs=57.9
Q ss_pred CCCccEEEcccccceeecCchhhccccccc-ccccc-------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecC
Q 039018 98 LRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFH 169 (181)
Q Consensus 98 ~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~ 169 (181)
+++|+.|++++|.++ .+| ..+++|++ .+.+| .+++|+.|++++|.++ .+|..+ ..+++|+.|+|++
T Consensus 220 ~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~-~lp~~l-~~l~~L~~L~L~~ 293 (622)
T 3g06_A 220 PSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESL-IHLSSETTVNLEG 293 (622)
T ss_dssp CTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-SCCGGG-GGSCTTCEEECCS
T ss_pred CCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-cCCHHH-hhccccCEEEecC
Confidence 367888888888887 456 33455666 45555 3466999999999999 889887 9999999999999
Q ss_pred CcccccCCC
Q 039018 170 NHFKEKFPG 178 (181)
Q Consensus 170 n~l~~~~p~ 178 (181)
|.+++..|.
T Consensus 294 N~l~~~~~~ 302 (622)
T 3g06_A 294 NPLSERTLQ 302 (622)
T ss_dssp CCCCHHHHH
T ss_pred CCCCCcCHH
Confidence 999876554
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.45 E-value=7.8e-15 Score=116.07 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=96.0
Q ss_pred CCCCcCCCeeeccCcccccccCccccccccccCCcccccc-cchh-ccccccccC----CCCcccCCCCCCcEEEcCCCc
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLT-SLKH-SISYNVLEG----KLPTSFGRLREPRSISLSWAN 79 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~-~L~~-~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~ 79 (181)
+..+++|+.|++++|.+.+..+..+ ...+.... +|++ ++++|.+.. .++..+..+++|++|++++|.
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~~~~l-------~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVGVHCV-------LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHHHHHH-------HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHhCCCcCEEeCCCCcCChHHHHHH-------HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 3445666666666666653333211 11111111 5777 788887773 346677778888888888887
Q ss_pred ccccchhHhhhccCCCCCCCCccEEEcccccceee----cCchhhccccccc-ccccc----------------cCCccc
Q 039018 80 KSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGA----IPACISNSSARKE-VGYTS----------------ILNLLR 138 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~----~p~~~~~~~~l~~-~~~~n----------------~l~~L~ 138 (181)
+....+..+..... ....+|+.|++++|.+++. ++..+..+++|++ .+.+| ..++|+
T Consensus 125 i~~~~~~~l~~~l~--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 125 LGDAGLQLLCEGLL--DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp CHHHHHHHHHHHHT--STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred CchHHHHHHHHHHh--cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence 76544443311000 2345688888888877642 3455666677777 45554 144788
Q ss_pred EEEccCCccccC----CChhHHHhcccCCEeEecCCcccc
Q 039018 139 ITDRSKNNFSGV----LPAELVTDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 139 ~l~l~~n~~~~~----~p~~~~~~l~~L~~L~L~~n~l~~ 174 (181)
+|++++|.+++. ++..+ ..+++|+.|++++|.+++
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIV-ASKASLRELALGSNKLGD 241 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHH-HHCTTCCEEECCSSBCHH
T ss_pred EEEccCCCCcHHHHHHHHHHH-HhCCCccEEeccCCcCCh
Confidence 888888877742 34444 667778888888777653
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.42 E-value=2e-12 Score=106.24 Aligned_cols=124 Identities=21% Similarity=0.234 Sum_probs=62.5
Q ss_pred CCCCCCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcc
Q 039018 2 IPNGPENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANK 80 (181)
Q Consensus 2 lp~~~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 80 (181)
+|..+. ++|+.|++++|.++ .+|. .+++|++ ++++|.++ .+|. .+++|++|++++|.+
T Consensus 55 lp~~l~--~~L~~L~L~~N~l~-~lp~--------------~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 55 LPDCLP--AHITTLVIPDNNLT-SLPA--------------LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPL 113 (622)
T ss_dssp CCSCCC--TTCSEEEECSCCCS-CCCC--------------CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCC
T ss_pred cChhhC--CCCcEEEecCCCCC-CCCC--------------cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcC
Confidence 555554 67777777777776 3332 2445555 66666665 3443 455666666666655
Q ss_pred cccchhHhh---hc-------cCCCCCCCCccEEEcccccceeecCchhhccccccc-ccccc-------cCCcccEEEc
Q 039018 81 SQEILEIFH---SF-------SRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS-------ILNLLRITDR 142 (181)
Q Consensus 81 ~~~~~~~~~---~~-------~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n-------~l~~L~~l~l 142 (181)
.+. |..+. .+ ..-...+++|+.|++++|.++ .+|..+. +|+. .+.+| .+++|+.|++
T Consensus 114 ~~l-~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-~l~~~~~---~L~~L~L~~N~l~~l~~~~~~L~~L~L 188 (622)
T 3g06_A 114 THL-PALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPALPS---ELCKLWAYNNQLTSLPMLPSGLQELSV 188 (622)
T ss_dssp CCC-CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCCCCT---TCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred CCC-CCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCC-CcCCccC---CCCEEECCCCCCCCCcccCCCCcEEEC
Confidence 431 11110 00 000012356666677666665 3444322 2223 22222 2355677777
Q ss_pred cCCccccCCC
Q 039018 143 SKNNFSGVLP 152 (181)
Q Consensus 143 ~~n~~~~~~p 152 (181)
++|.++ .+|
T Consensus 189 s~N~l~-~l~ 197 (622)
T 3g06_A 189 SDNQLA-SLP 197 (622)
T ss_dssp CSSCCS-CCC
T ss_pred CCCCCC-CCC
Confidence 777766 344
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=2.3e-12 Score=98.62 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=78.0
Q ss_pred eeeccCc-ccccccCccccccccccCCcccccccchh-cccc-ccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhh
Q 039018 14 YLDLSDN-QFNSTIPEWISRINCTISSGLGNLTSLKH-SISY-NVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHS 90 (181)
Q Consensus 14 ~L~ls~n-~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 90 (181)
.++++++ +++ .+|. +..+++|+. ++++ |.+.+..+..|..+++|+.|++++|.+.+..|..|
T Consensus 12 ~v~~~~~n~l~------------~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-- 76 (347)
T 2ifg_A 12 GLRCTRDGALD------------SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF-- 76 (347)
T ss_dssp CEECCSSCCCT------------TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGG--
T ss_pred EEEcCCCCCCC------------ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHh--
Confidence 4688887 777 4445 677788888 8885 88886666778888889999998888888777788
Q ss_pred ccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEccCCcccc
Q 039018 91 FSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSG 149 (181)
Q Consensus 91 ~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~ 149 (181)
..+++|+.|+|++|+++ .+|...... +. |+.|++.+|.+..
T Consensus 77 -----~~l~~L~~L~l~~N~l~-~~~~~~~~~-----------~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 77 -----HFTPRLSRLNLSFNALE-SLSWKTVQG-----------LS-LQELVLSGNPLHC 117 (347)
T ss_dssp -----GSCSCCCEEECCSSCCS-CCCSTTTCS-----------CC-CCEEECCSSCCCC
T ss_pred -----cCCcCCCEEeCCCCccc-eeCHHHccc-----------CC-ceEEEeeCCCccC
Confidence 88888888999988888 455433321 22 8888888888873
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=3.7e-12 Score=97.43 Aligned_cols=101 Identities=19% Similarity=0.139 Sum_probs=71.7
Q ss_pred ccccc-cccCCCCcccCCCCCCcEEEcCC-CcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccc
Q 039018 50 SISYN-VLEGKLPTSFGRLREPRSISLSW-ANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKE 127 (181)
Q Consensus 50 ~l~~n-~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~ 127 (181)
+.+++ .+. .+|. +..+++|+.|++++ |.+.+..+..| ..+.+|+.|+|++|++++..|..|..++
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~-------~~l~~L~~L~l~~N~l~~~~~~~~~~l~---- 80 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDL-------RGLGELRNLTIVKSGLRFVAPDAFHFTP---- 80 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGS-------CSCCCCSEEECCSSCCCEECTTGGGSCS----
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHh-------ccccCCCEEECCCCccceeCHHHhcCCc----
Confidence 55555 666 5677 77777888888875 77776666667 7788888888888888766666677643
Q ss_pred ccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 128 VGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 128 ~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
+|++|+|++|+++ .+|..+|..++ |+.|+|.+|.+.
T Consensus 81 --------~L~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 81 --------RLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp --------CCCEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred --------CCCEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 4778888888887 45554435454 788888887776
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=2.6e-12 Score=99.53 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=30.4
Q ss_pred CCcccEEEccCCccccCCChhHH---HhcccCCEeEecCCcccc
Q 039018 134 LNLLRITDRSKNNFSGVLPAELV---TDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 134 l~~L~~l~l~~n~~~~~~p~~~~---~~l~~L~~L~L~~n~l~~ 174 (181)
.++|+.|++++|.+++.....+. ...+.|+.|+|++|.+++
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 45699999999999753222221 456889999999999874
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.10 E-value=2.2e-11 Score=99.10 Aligned_cols=156 Identities=12% Similarity=0.069 Sum_probs=91.7
Q ss_pred CCcCCCeeeccCcccccccCccccc--------cc---------cccCCcccccccchh-ccccccccCC----CCcccC
Q 039018 8 NLSSLRYLDLSDNQFNSTIPEWISR--------IN---------CTISSGLGNLTSLKH-SISYNVLEGK----LPTSFG 65 (181)
Q Consensus 8 ~l~~L~~L~ls~n~i~~~~p~~~~~--------~~---------~~l~~~l~~l~~L~~-~l~~n~~~~~----~~~~~~ 65 (181)
.+++|+.|++++|.+.+..+..+.. +. ..++.....+++|++ ++++|.+.+. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5788999999988876544433321 00 011112235677888 8888877644 222345
Q ss_pred CCCCCcEEEcCCCccc----ccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhccccccccccc-c--------
Q 039018 66 RLREPRSISLSWANKS----QEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYT-S-------- 132 (181)
Q Consensus 66 ~l~~L~~L~l~~n~~~----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~-n-------- 132 (181)
.+++|+.|++++|.+. ..++..+ ..+++|+.|++++|.+. .+|..+..+++|++.... .
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~-------~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIA-------RNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHH-------HHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHH-------hhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHH
Confidence 6788888888888776 2334444 56788999999888877 466667777777662111 0
Q ss_pred ------cCCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 133 ------ILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 133 ------~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
.+++|+.++++++... .+|..+ ..+++|++|++++|.++
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~~~-~l~~~~-~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMGPN-EMPILF-PFAAQIRKLDLLYALLE 306 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCCTT-TGGGGG-GGGGGCCEEEETTCCCC
T ss_pred HHHHhhccccccccCccccchh-HHHHHH-hhcCCCcEEecCCCcCC
Confidence 3344555555543222 344433 55555666666555543
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.05 E-value=2.2e-11 Score=99.08 Aligned_cols=42 Identities=24% Similarity=0.053 Sum_probs=32.7
Q ss_pred CCcccEEEccCCccccCCChhHHHhcccCCEeEecCCccccc
Q 039018 134 LNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFKEK 175 (181)
Q Consensus 134 l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 175 (181)
+++|++|++++|.+++.....++..+++|+.|++++|.+++.
T Consensus 487 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 566999999999887543444447889999999999998865
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=1.1e-09 Score=83.22 Aligned_cols=74 Identities=11% Similarity=-0.014 Sum_probs=45.4
Q ss_pred CCCccEEEcccccceeecCchhhccccccc-ccccc----------cCCccc-EEEccCCccccCCChhHHHhcccCCEe
Q 039018 98 LRSLQILDIACNNLSGAIPACISNSSARKE-VGYTS----------ILNLLR-ITDRSKNNFSGVLPAELVTDLVALRSL 165 (181)
Q Consensus 98 ~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~-~~~~n----------~l~~L~-~l~l~~n~~~~~~p~~~~~~l~~L~~L 165 (181)
+.+|+.+++++|.++..-+..|..+.+|++ .+..| .+.+|+ .+++.. .++ .+++..|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEE
Confidence 455666666666665333344555555555 22222 455677 888877 555 4444444888888888
Q ss_pred EecCCccc
Q 039018 166 NLFHNHFK 173 (181)
Q Consensus 166 ~L~~n~l~ 173 (181)
+++.|.++
T Consensus 303 ~l~~n~i~ 310 (329)
T 3sb4_A 303 LATGDKIT 310 (329)
T ss_dssp EECSSCCC
T ss_pred EeCCCccC
Confidence 88888877
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.99 E-value=1.7e-11 Score=94.92 Aligned_cols=144 Identities=17% Similarity=0.153 Sum_probs=98.1
Q ss_pred CcCCCeeeccCcccccccCccccccccccCCccc-ccccchh-ccccccccCCCCccc-CCCCCCcEEEcCCCcccccch
Q 039018 9 LSSLRYLDLSDNQFNSTIPEWISRINCTISSGLG-NLTSLKH-SISYNVLEGKLPTSF-GRLREPRSISLSWANKSQEIL 85 (181)
Q Consensus 9 l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~-~l~~L~~-~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~ 85 (181)
+++|+.|++++|.+.......+ ...+. ....|++ ++++|.++......+ ..+++|+.|++++|.+.....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l-------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVV-------AAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC 143 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHH-------HHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHH-------HHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence 3578999999999984433322 12222 2368888 999999874432233 235689999999999875544
Q ss_pred hHhhhccCCCCCCCCccEEEcccccceee----cCchhhcccccccccccccCCcccEEEccCCccccCC----ChhHHH
Q 039018 86 EIFHSFSRDNWTLRSLQILDIACNNLSGA----IPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVL----PAELVT 157 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~----~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~----p~~~~~ 157 (181)
..+..... ....+|+.|++++|.++.. ++..+.. .++|++|++++|.+++.. +..+ .
T Consensus 144 ~~L~~~L~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~------------~~~L~~L~Ls~N~l~~~g~~~L~~~L-~ 208 (372)
T 3un9_A 144 KDLRDLLL--HDQCQITTLRLSNNPLTAAGVAVLMEGLAG------------NTSVTHLSLLHTGLGDEGLELLAAQL-D 208 (372)
T ss_dssp HHHHHHHH--STTCCCCEEECCSSCCHHHHHHHHHHHHHT------------CSSCCEEECTTSSCHHHHHHHHHHHG-G
T ss_pred HHHHHHHH--hcCCccceeeCCCCCCChHHHHHHHHHHhc------------CCCcCEEeCCCCCCCcHHHHHHHHHH-h
Confidence 44421110 2457899999999998742 3333344 455999999999998532 3334 5
Q ss_pred hcccCCEeEecCCcccc
Q 039018 158 DLVALRSLNLFHNHFKE 174 (181)
Q Consensus 158 ~l~~L~~L~L~~n~l~~ 174 (181)
..++|+.|+|++|.+++
T Consensus 209 ~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGD 225 (372)
T ss_dssp GCSCCCEEECCSSCCCH
T ss_pred cCCCcCeEECCCCCCCH
Confidence 67789999999999974
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=1.7e-09 Score=82.13 Aligned_cols=91 Identities=18% Similarity=0.073 Sum_probs=56.7
Q ss_pred CCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccc-cc-cccc----------cC
Q 039018 67 LREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARK-EV-GYTS----------IL 134 (181)
Q Consensus 67 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~-~~-~~~n----------~l 134 (181)
+++|+.+++++|.+.......| ..+.+|+.+++..| ++..-+..|..+.+|+ .+ +-.+ .+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF-------~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTF-------AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTT-------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTC
T ss_pred cCCCeEEECCCCCcceecHhhh-------hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCC
Confidence 4556666666555554444445 55666666666655 4433344555666555 41 1111 46
Q ss_pred CcccEEEccCCccccCCChhHHHhcccCCEeE
Q 039018 135 NLLRITDRSKNNFSGVLPAELVTDLVALRSLN 166 (181)
Q Consensus 135 ~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~ 166 (181)
++|+.++++.|.++ .++...|.++++|+.+.
T Consensus 297 ~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 297 DNLRYVLATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred ccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence 67999999999998 56655559999999876
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.84 E-value=5.9e-10 Score=90.63 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=32.7
Q ss_pred CCcCCCeeeccCc-ccccccCccccccccccCCcccccccchh-ccccccccCCCCccc----CCCCCCcEEEcCCCc
Q 039018 8 NLSSLRYLDLSDN-QFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSF----GRLREPRSISLSWAN 79 (181)
Q Consensus 8 ~l~~L~~L~ls~n-~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~----~~l~~L~~L~l~~n~ 79 (181)
.+++|+.|++++| .+.+... +..+..+++|++ ++++|.+.+..+..+ ..+++|+.|++++|.
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l----------~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGL----------AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHH----------HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred hCCCCcEEeCCCcCCCCHHHH----------HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 3567777777776 3432111 112235666666 666666554332222 245566777766664
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.77 E-value=1.2e-09 Score=88.78 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=54.0
Q ss_pred CCCCCCcEEEcCCCcccccchhHhhhccCCCCC-CCCccEEEcccccceeecCchh-hcccccccccccccCCcccEEEc
Q 039018 65 GRLREPRSISLSWANKSQEILEIFHSFSRDNWT-LRSLQILDIACNNLSGAIPACI-SNSSARKEVGYTSILNLLRITDR 142 (181)
Q Consensus 65 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~i~~~~p~~~-~~~~~l~~~~~~n~l~~L~~l~l 142 (181)
..+++|+.|++++ .+.......+ .. +++|+.|++++|.+++..+..+ .. +++|+.|++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l-------~~~~~~L~~L~L~~~~i~~~~~~~l~~~------------~~~L~~L~L 488 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYI-------GTYAKKMEMLSVAFAGDSDLGMHHVLSG------------CDSLRKLEI 488 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHH-------HHHCTTCCEEEEESCCSSHHHHHHHHHH------------CTTCCEEEE
T ss_pred hhCCCccEEeecC-cccHHHHHHH-------HHhchhccEeeccCCCCcHHHHHHHHhc------------CCCcCEEEC
Confidence 4455666666654 3333333333 22 5667777777766654333332 23 456888899
Q ss_pred cCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 143 SKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 143 ~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
++|.+++..+..++..+++|+.|++++|.++
T Consensus 489 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 489 RDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp ESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 8888864434334356888899999888875
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=1.4e-09 Score=83.83 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=29.9
Q ss_pred CCcccEEEccCCccccCCChhHH---HhcccCCEeEecCCcccc
Q 039018 134 LNLLRITDRSKNNFSGVLPAELV---TDLVALRSLNLFHNHFKE 174 (181)
Q Consensus 134 l~~L~~l~l~~n~~~~~~p~~~~---~~l~~L~~L~L~~n~l~~ 174 (181)
++.|++|+++.|.+.+..+..+. ..+++|+.|+|++|.++.
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 56789999999888754333332 457889999999888764
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.66 E-value=1.6e-09 Score=75.88 Aligned_cols=118 Identities=9% Similarity=0.046 Sum_probs=69.9
Q ss_pred ccccccchh-ccccc-cccCC----CCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceee
Q 039018 41 LGNLTSLKH-SISYN-VLEGK----LPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGA 114 (181)
Q Consensus 41 l~~l~~L~~-~l~~n-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 114 (181)
+...+.|++ ++++| .+... +...+...++|++|++++|.+.......+.+. +....+|+.|++++|.++..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~---L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM---LKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH---HHHCSSCCEEECCSSCCCHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH---HHhCCCcCEEECcCCcCCHH
Confidence 344555655 66665 55422 33445556778888888888764332222111 14557788888888887643
Q ss_pred c----CchhhcccccccccccccCCcccEEEc--cCCccccCCChhHH---HhcccCCEeEecCCccc
Q 039018 115 I----PACISNSSARKEVGYTSILNLLRITDR--SKNNFSGVLPAELV---TDLVALRSLNLFHNHFK 173 (181)
Q Consensus 115 ~----p~~~~~~~~l~~~~~~n~l~~L~~l~l--~~n~~~~~~p~~~~---~~l~~L~~L~L~~n~l~ 173 (181)
- ...+.. .++|++|++ ++|.+.......+. ...+.|+.|+|++|.+.
T Consensus 109 g~~~l~~~L~~------------n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQS------------NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGG------------CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHh------------CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2 222333 345888888 77888754222221 44577888888888765
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.65 E-value=2.8e-07 Score=72.02 Aligned_cols=156 Identities=12% Similarity=0.058 Sum_probs=83.2
Q ss_pred CCCCCCcCCCeeeccCcccccccCccccc------------cccccCCcccccccchh-ccccccccCCCCcccCCCCCC
Q 039018 4 NGPENLSSLRYLDLSDNQFNSTIPEWISR------------INCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREP 70 (181)
Q Consensus 4 ~~~~~l~~L~~L~ls~n~i~~~~p~~~~~------------~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L 70 (181)
.+|.+|++|+.+++.+|.++ .+++.... +...-...|.++.+|+. .+..+ +...-...|.+ .+|
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI 250 (401)
T ss_dssp STTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred HHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence 46788899999999988887 34332211 00000112333444444 33332 11111222222 334
Q ss_pred cEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccce-----eecCchhhcccccccc-cccc----------cC
Q 039018 71 RSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLS-----GAIPACISNSSARKEV-GYTS----------IL 134 (181)
Q Consensus 71 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-----~~~p~~~~~~~~l~~~-~~~n----------~l 134 (181)
+.+.+. +.+.......| ..+.+|+.+.+.+|.+. ..-+..|..|.+|+.+ +-.+ .+
T Consensus 251 ~~i~lp-~~i~~I~~~aF-------~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c 322 (401)
T 4fdw_A 251 TTVKLP-NGVTNIASRAF-------YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGN 322 (401)
T ss_dssp SEEEEE-TTCCEECTTTT-------TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTC
T ss_pred cEEEeC-CCccEEChhHh-------hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCC
Confidence 444442 22222223334 67777888877776543 2344567777777662 2222 56
Q ss_pred CcccEEEccCCccccCCChhHHHhcccCCEeEecCCccc
Q 039018 135 NLLRITDRSKNNFSGVLPAELVTDLVALRSLNLFHNHFK 173 (181)
Q Consensus 135 ~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~l~ 173 (181)
.+|+.+.+..+ ++ .+....|..+ +|+.+.+.+|.+.
T Consensus 323 ~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 323 RKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCC
T ss_pred CCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCc
Confidence 67888888555 44 3443334778 8888888888766
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.60 E-value=1e-07 Score=70.41 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=57.1
Q ss_pred CCCCCcEEEcCCCcccc--cchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEcc
Q 039018 66 RLREPRSISLSWANKSQ--EILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRS 143 (181)
Q Consensus 66 ~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~ 143 (181)
.+++|+.|++++|.+.+ .++..+ ..+++|+.|+|++|.+++. ..+..++. + +|+.|+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~-------~~l~~L~~L~Ls~N~i~~~--~~l~~l~~---------l-~L~~L~L~ 228 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIV-------QKAPNLKILNLSGNELKSE--RELDKIKG---------L-KLEELWLD 228 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHH-------HHSTTCCEEECTTSCCCSG--GGGGGGTT---------S-CCSEEECT
T ss_pred hCCCCCEEECCCCCCCCCccchhHH-------hhCCCCCEEECCCCccCCc--hhhhhccc---------C-CcceEEcc
Confidence 46788888888888876 344555 6778888888888888733 33444332 2 58888888
Q ss_pred CCccccCCCh------hHHHhcccCCEeE
Q 039018 144 KNNFSGVLPA------ELVTDLVALRSLN 166 (181)
Q Consensus 144 ~n~~~~~~p~------~~~~~l~~L~~L~ 166 (181)
+|.+++.+|. .++..+++|+.||
T Consensus 229 ~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 229 GNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 8888765552 2347788888877
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=9.8e-09 Score=71.83 Aligned_cols=125 Identities=15% Similarity=0.021 Sum_probs=84.1
Q ss_pred CCCCcCCCeeeccCc-ccccccCccccccccccCCcccccccchh-ccccccccCC----CCcccCCCCCCcEEEcCCCc
Q 039018 6 PENLSSLRYLDLSDN-QFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGK----LPTSFGRLREPRSISLSWAN 79 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n-~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~ 79 (181)
+...+.|+.|++++| .+...-.. .+...+...++|++ ++++|.+... +...+...++|++|++++|.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~-------~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLK-------ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHH-------HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHH-------HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 456788999999999 88743333 23345666788989 9999998743 33445566889999999999
Q ss_pred ccccchhHhhhccCCCCCCCCccEEEc--ccccceeecCchhhcccccccccccccCCcccEEEccCCccc
Q 039018 80 KSQEILEIFHSFSRDNWTLRSLQILDI--ACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFS 148 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~L~~L~l--~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~ 148 (181)
+.......+ ...+....+|+.|++ ++|.++......+..+-. ..++|++|++++|.+.
T Consensus 105 i~~~g~~~l---~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~--------~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 105 ISGSGILAL---VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE--------KNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCHHHHHHH---HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH--------HCSSCCEEECCCSSHH
T ss_pred CCHHHHHHH---HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHH--------hCCCcCEEeccCCCCC
Confidence 875432222 111266788999999 889887432222221100 0345999999999886
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=3.4e-07 Score=70.53 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=87.8
Q ss_pred CCCCcCCCeeeccCcccccccCccccccccccCCcccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccc
Q 039018 6 PENLSSLRYLDLSDNQFNSTIPEWISRINCTISSGLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEI 84 (181)
Q Consensus 6 ~~~l~~L~~L~ls~n~i~~~~p~~~~~~~~~l~~~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 84 (181)
+.++++|+.|.+.+......--.++ ..+.+...+..++.|+. .+++|.-. .++. +. +++|+.|++..+.+....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~--~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWI--EQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGC--BCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHH
T ss_pred hhhcchhhheeecCcchhhcccccc--cccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHH
Confidence 4456788888876643321000000 00012233455677888 78776312 2333 33 788999999887765444
Q ss_pred hhHhhhccCCCCCCCCccEEEccc--ccceeecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHH--hcc
Q 039018 85 LEIFHSFSRDNWTLRSLQILDIAC--NNLSGAIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVT--DLV 160 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~L~l~~--n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~--~l~ 160 (181)
...+.. ..+++|+.|+|+. |...+.. .+ ..+...+....+++|++|++.+|.+.+..+..++. .++
T Consensus 210 l~~l~~-----~~lp~L~~L~L~~~~~~~~~~~--~~---~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~ 279 (362)
T 2ra8_A 210 VEDILG-----SDLPNLEKLVLYVGVEDYGFDG--DM---NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279 (362)
T ss_dssp HHHHHH-----SBCTTCCEEEEECBCGGGTCCS--CG---GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG
T ss_pred HHHHHH-----ccCCCCcEEEEeccccccccch--hH---HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC
Confidence 344411 3678999998853 2211110 00 00111111112577999999999987555555532 478
Q ss_pred cCCEeEecCCcccc
Q 039018 161 ALRSLNLFHNHFKE 174 (181)
Q Consensus 161 ~L~~L~L~~n~l~~ 174 (181)
+|+.|+|+.|.+++
T Consensus 280 ~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 280 QLETMDISAGVLTD 293 (362)
T ss_dssp GCSEEECCSSCCBH
T ss_pred CCCEEECCCCCCCh
Confidence 99999999999875
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=1.5e-06 Score=64.20 Aligned_cols=67 Identities=22% Similarity=0.264 Sum_probs=53.8
Q ss_pred CCCCCccEEEccccccee--ecCchhhcccccccccccccCCcccEEEccCCccccCCChhHHHhcc--cCCEeEecCCc
Q 039018 96 WTLRSLQILDIACNNLSG--AIPACISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLV--ALRSLNLFHNH 171 (181)
Q Consensus 96 ~~~~~L~~L~l~~n~i~~--~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~--~L~~L~L~~n~ 171 (181)
..+++|+.|+|++|++++ .+|..+.. +++|+.|+|++|++.+. ..+ ..+. +|+.|+|++|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~------------l~~L~~L~Ls~N~i~~~--~~l-~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQK------------APNLKILNLSGNELKSE--REL-DKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHH------------STTCCEEECTTSCCCSG--GGG-GGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhh------------CCCCCEEECCCCccCCc--hhh-hhcccCCcceEEccCCc
Confidence 457899999999999986 45566666 45599999999999843 344 5666 89999999999
Q ss_pred ccccCC
Q 039018 172 FKEKFP 177 (181)
Q Consensus 172 l~~~~p 177 (181)
+++.+|
T Consensus 232 l~~~~~ 237 (267)
T 3rw6_A 232 LCDTFR 237 (267)
T ss_dssp TGGGCS
T ss_pred CccccC
Confidence 998666
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.21 E-value=5.4e-06 Score=64.72 Aligned_cols=117 Identities=3% Similarity=-0.089 Sum_probs=68.1
Q ss_pred ccchh-ccccccccCCCCcccCCCCCCcEEEcCCCccc-----ccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018 45 TSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS-----QEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC 118 (181)
Q Consensus 45 ~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~ 118 (181)
.+|+. .+.. .+...-...|.++++|+.+++..|.+. ......| ..+.+|+.+.+.. .++..-...
T Consensus 248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF-------~~c~~L~~l~l~~-~i~~I~~~a 318 (401)
T 4fdw_A 248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL-------EGCPKLARFEIPE-SIRILGQGL 318 (401)
T ss_dssp CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT-------TTCTTCCEECCCT-TCCEECTTT
T ss_pred CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh-------hCCccCCeEEeCC-ceEEEhhhh
Confidence 44555 4532 233234555667777777777665543 2233445 6666777777663 354334455
Q ss_pred hhcccccccc-cccc----------cCCcccEEEccCCccccCCChhHHHhcc-cCCEeEecCCcc
Q 039018 119 ISNSSARKEV-GYTS----------ILNLLRITDRSKNNFSGVLPAELVTDLV-ALRSLNLFHNHF 172 (181)
Q Consensus 119 ~~~~~~l~~~-~~~n----------~l~~L~~l~l~~n~~~~~~p~~~~~~l~-~L~~L~L~~n~l 172 (181)
|..|.+|+.+ +-.+ .+ +|+.+++++|... .++...|..++ .++.+.+..+.+
T Consensus 319 F~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 319 LGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHHH
Confidence 6666666662 2211 34 6999999999887 45544446664 677888766543
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=1.2e-06 Score=60.48 Aligned_cols=88 Identities=8% Similarity=-0.039 Sum_probs=44.0
Q ss_pred CCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEccccc-ceeecCchhhcccccccccccccCCcccEEEccCCc
Q 039018 68 REPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNN-LSGAIPACISNSSARKEVGYTSILNLLRITDRSKNN 146 (181)
Q Consensus 68 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~ 146 (181)
.+|+.||++++.++...-..+ ..+++|+.|++++|. +++.--..+..+.+ ..++|++|++++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~--------~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-------EGLQYVEKIRLCKCHYIEDGCLERLSQLEN--------LQKSMLEMEIISCG 125 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-------TTCSCCCEEEEESCTTCCHHHHHHHHTCHH--------HHHHCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHh-------cCCCCCCEEEeCCCCccCHHHHHHHHhccc--------ccCCCCEEEcCCCC
Confidence 456666666666554443444 566666666666663 44222122222100 01236666666653
Q ss_pred -cccCCChhHHHhcccCCEeEecCCc
Q 039018 147 -FSGVLPAELVTDLVALRSLNLFHNH 171 (181)
Q Consensus 147 -~~~~~p~~~~~~l~~L~~L~L~~n~ 171 (181)
+++..-..+ ..+++|+.|+++++.
T Consensus 126 ~ITD~Gl~~L-~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 126 NVTDKGIIAL-HHFRNLKYLFLSDLP 150 (176)
T ss_dssp TCCHHHHHHG-GGCTTCCEEEEESCT
T ss_pred cCCHHHHHHH-hcCCCCCEEECCCCC
Confidence 554333344 556666666666543
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=1.2e-05 Score=55.56 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=60.4
Q ss_pred cccchh-ccccccccCCCCcccCCCCCCcEEEcCCCc-ccccchhHhhhccCCCCCC----CCccEEEccccc-ceeecC
Q 039018 44 LTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWAN-KSQEILEIFHSFSRDNWTL----RSLQILDIACNN-LSGAIP 116 (181)
Q Consensus 44 l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~----~~L~~L~l~~n~-i~~~~p 116 (181)
-..|+. ++++|.++..--..+..+++|+.|++++|. ++...-..+ ..+ ++|+.|++++|. +++.--
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-------~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-------SQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-------HTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-------HhcccccCCCCEEEcCCCCcCCHHHH
Confidence 346777 888888776555667889999999999986 554444455 443 479999999984 764332
Q ss_pred chhhcccccccccccccCCcccEEEccCCc-cc
Q 039018 117 ACISNSSARKEVGYTSILNLLRITDRSKNN-FS 148 (181)
Q Consensus 117 ~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~-~~ 148 (181)
..+.. +++|++|+++++. ++
T Consensus 133 ~~L~~------------~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 133 IALHH------------FRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHGGG------------CTTCCEEEEESCTTCC
T ss_pred HHHhc------------CCCCCEEECCCCCCCC
Confidence 33444 5569999999874 44
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.51 E-value=1.1e-05 Score=56.67 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=7.7
Q ss_pred CCCccEEEcccccce
Q 039018 98 LRSLQILDIACNNLS 112 (181)
Q Consensus 98 ~~~L~~L~l~~n~i~ 112 (181)
-..|+.|+|+.|.|+
T Consensus 97 N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 97 SPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECCSSBCC
T ss_pred CCccCeEecCCCcCC
Confidence 344555555555554
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.38 E-value=0.00021 Score=46.80 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=23.5
Q ss_pred CCccEEEcccccceeecC-chhhcccccccccccccCCcccEEEccCCccc
Q 039018 99 RSLQILDIACNNLSGAIP-ACISNSSARKEVGYTSILNLLRITDRSKNNFS 148 (181)
Q Consensus 99 ~~L~~L~l~~n~i~~~~p-~~~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~ 148 (181)
.+++.|+|++|+|+ .+| +.|.. +++|+.|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~-~l~~~~f~~------------l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLT-ALPPGLLDA------------LPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCS-SCCTTTGGG------------CTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCC-ccChhhhhh------------ccccCEEEecCCCee
Confidence 46777777777777 444 34444 334777777777665
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.25 E-value=0.0012 Score=51.13 Aligned_cols=10 Identities=20% Similarity=0.139 Sum_probs=5.0
Q ss_pred ccEEEccCCc
Q 039018 137 LRITDRSKNN 146 (181)
Q Consensus 137 L~~l~l~~n~ 146 (181)
|+.+++.++.
T Consensus 359 L~~i~~~~~~ 368 (394)
T 4gt6_A 359 LNNIEYSGSR 368 (394)
T ss_dssp CCEEEESSCH
T ss_pred CCEEEECCce
Confidence 5555555443
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.18 E-value=0.0018 Score=50.02 Aligned_cols=84 Identities=13% Similarity=0.042 Sum_probs=46.1
Q ss_pred cCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEEcc
Q 039018 64 FGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITDRS 143 (181)
Q Consensus 64 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~l~ 143 (181)
+..+.+|+.+.+..+ +.......| ..+.+|+.+++..+ ++..-..+|..|. +|+.+++.
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF-------~~c~~L~~i~lp~~-v~~I~~~aF~~c~------------~L~~i~lp 351 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAF-------ESCTSLVSIDLPYL-VEEIGKRSFRGCT------------SLSNINFP 351 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTT-------TTCTTCCEECCCTT-CCEECTTTTTTCT------------TCCEECCC
T ss_pred ccccccccccccccc-cceechhhh-------cCCCCCCEEEeCCc-ccEEhHHhccCCC------------CCCEEEEC
Confidence 445556666655433 222333344 56666776666543 4423334555544 47777776
Q ss_pred CCccccCCChhHHHhcccCCEeEecCC
Q 039018 144 KNNFSGVLPAELVTDLVALRSLNLFHN 170 (181)
Q Consensus 144 ~n~~~~~~p~~~~~~l~~L~~L~L~~n 170 (181)
.+ ++ .+....|..|.+|+.+++..+
T Consensus 352 ~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 352 LS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred cc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 65 44 344333477888888877643
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.16 E-value=0.00041 Score=48.67 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=53.1
Q ss_pred CCCCCCcEEEcCCC-ccccc----chhHhhhccCCCCCCCCccEEEcccccceeecC----chhhcccccccccccccCC
Q 039018 65 GRLREPRSISLSWA-NKSQE----ILEIFHSFSRDNWTLRSLQILDIACNNLSGAIP----ACISNSSARKEVGYTSILN 135 (181)
Q Consensus 65 ~~l~~L~~L~l~~n-~~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p----~~~~~~~~l~~~~~~n~l~ 135 (181)
..-+.|+.|++++| .+... +.+.+ ..-..|+.|+|++|.+...-. ..+..- +
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL-------~~N~~L~~L~L~~n~igd~ga~alA~aL~~N------------~ 98 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAA-------CNSKHIEKFSLANTAISDSEARGLIELIETS------------P 98 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHH-------TTCSCCCEEECTTSCCBHHHHTTHHHHHHHC------------S
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHH-------hhCCCcCEEEccCCCCChHHHHHHHHHHhcC------------C
Confidence 44568999999985 66533 23444 677899999999999975333 333333 3
Q ss_pred cccEEEccCCccccCCChhHHHh---cccCCEeEecCC
Q 039018 136 LLRITDRSKNNFSGVLPAELVTD---LVALRSLNLFHN 170 (181)
Q Consensus 136 ~L~~l~l~~n~~~~~~p~~~~~~---l~~L~~L~L~~n 170 (181)
.|++|+|+.|.|.......++.. -..|+.|+|++|
T Consensus 99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 46666666666664333333222 234666666543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.92 E-value=0.005 Score=47.12 Aligned_cols=105 Identities=8% Similarity=0.035 Sum_probs=53.8
Q ss_pred ccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchh
Q 039018 41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACI 119 (181)
Q Consensus 41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~ 119 (181)
+.++..|+. .+..+ +...-...+.++.+|+.+.+..+ +.......| ..+.+|+.+.+..+.++..-...|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF-------~~c~~L~~i~l~~~~i~~I~~~aF 306 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC-------SGCSNLTKVVMDNSAIETLEPRVF 306 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT-------TTCTTCCEEEECCTTCCEECTTTT
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc-------ccccccccccccccccceehhhhh
Confidence 334455555 44433 22123344555666666666433 222223344 666777777777666653334556
Q ss_pred hcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEeEec
Q 039018 120 SNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSLNLF 168 (181)
Q Consensus 120 ~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L~L~ 168 (181)
..|.+ |+.+.+..+ ++ .+...-|..+.+|+.+.+.
T Consensus 307 ~~c~~------------L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 307 MDCVK------------LSSVTLPTA-LK-TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCTT------------CCEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred cCCCC------------CCEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence 65443 666666443 33 3333333666666666553
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.87 E-value=0.0064 Score=46.93 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=50.3
Q ss_pred cccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCchhhcccccccccccccCCcccEEE
Q 039018 62 TSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPACISNSSARKEVGYTSILNLLRITD 141 (181)
Q Consensus 62 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~~~~~~~l~~~~~~n~l~~L~~l~ 141 (181)
..+.++.+|+.+.+.. .+.......| ..+.+|+.+.+..+ ++..-..+|.. +.+|+.+.
T Consensus 282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF-------~~c~~L~~i~lp~~-v~~I~~~aF~~------------C~~L~~i~ 340 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS-RITELPESVF-------AGCISLKSIDIPEG-ITQILDDAFAG------------CEQLERIA 340 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTT-------TTCTTCCEEECCTT-CCEECTTTTTT------------CTTCCEEE
T ss_pred cccccccccccccCCC-cccccCceee-------cCCCCcCEEEeCCc-ccEehHhHhhC------------CCCCCEEE
Confidence 3344555555555532 2222222334 55666666666543 33233344555 45588888
Q ss_pred ccCCccccCCChhHHHhcccCCEeEecCCc
Q 039018 142 RSKNNFSGVLPAELVTDLVALRSLNLFHNH 171 (181)
Q Consensus 142 l~~n~~~~~~p~~~~~~l~~L~~L~L~~n~ 171 (181)
+..+ ++ .+.+.-|..|.+|+.+++.++.
T Consensus 341 ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 341 IPSS-VT-KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp ECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred ECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence 8655 55 5665555999999999998764
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.62 E-value=0.0065 Score=46.88 Aligned_cols=101 Identities=13% Similarity=0.089 Sum_probs=67.8
Q ss_pred cccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018 40 GLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC 118 (181)
Q Consensus 40 ~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~ 118 (181)
.+..+.+|+. .+..+ +...-...|.++.+|+.+++..+ +......+| ..+.+|+.+.+..+ ++..-..+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF-------~~c~~L~~i~lp~~-l~~I~~~a 361 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSF-------RGCTSLSNINFPLS-LRKIGANA 361 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT-------TTCTTCCEECCCTT-CCEECTTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhc-------cCCCCCCEEEECcc-ccEehHHH
Confidence 4556777777 66554 33344567888999999999754 444455667 88999999999876 65344567
Q ss_pred hhcccccccccccccCCcccEEEccCCccccCCChhHHHhcccCCEe
Q 039018 119 ISNSSARKEVGYTSILNLLRITDRSKNNFSGVLPAELVTDLVALRSL 165 (181)
Q Consensus 119 ~~~~~~l~~~~~~n~l~~L~~l~l~~n~~~~~~p~~~~~~l~~L~~L 165 (181)
|..|.+ |+.+++..+ +. .+...+ .++++|+.+
T Consensus 362 F~~C~~------------L~~i~lp~~-~~-~~~~~F-~~c~~L~~I 393 (394)
T 4fs7_A 362 FQGCIN------------LKKVELPKR-LE-QYRYDF-EDTTKFKWI 393 (394)
T ss_dssp BTTCTT------------CCEEEEEGG-GG-GGGGGB-CTTCEEEEE
T ss_pred hhCCCC------------CCEEEECCC-CE-Ehhhee-cCCCCCcEE
Confidence 777554 888888654 22 233344 677777654
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.50 E-value=0.011 Score=45.27 Aligned_cols=79 Identities=13% Similarity=0.021 Sum_probs=54.1
Q ss_pred cccccccchh-ccccccccCCCCcccCCCCCCcEEEcCCCcccccchhHhhhccCCCCCCCCccEEEcccccceeecCch
Q 039018 40 GLGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKSQEILEIFHSFSRDNWTLRSLQILDIACNNLSGAIPAC 118 (181)
Q Consensus 40 ~l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~ 118 (181)
.+.++..|+. .+..+ +...-...+.++.+|+.+.+..+.+.......| ..+.+|+.+.+..+ ++..-..+
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF-------~~c~~L~~i~lp~~-l~~I~~~a 328 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVF-------MDCVKLSSVTLPTA-LKTIQVYA 328 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTT-------TTCTTCCEEECCTT-CCEECTTT
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhh-------cCCCCCCEEEcCcc-ccEEHHHH
Confidence 3455667776 66543 332344567889999999998877765556677 88999999999765 55344567
Q ss_pred hhccccccc
Q 039018 119 ISNSSARKE 127 (181)
Q Consensus 119 ~~~~~~l~~ 127 (181)
|..|.+|+.
T Consensus 329 F~~C~~L~~ 337 (379)
T 4h09_A 329 FKNCKALST 337 (379)
T ss_dssp TTTCTTCCC
T ss_pred hhCCCCCCE
Confidence 877666443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.04 E-value=0.01 Score=38.55 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=21.9
Q ss_pred chh-ccccccccCCCCcccCCCCCCcEEEcCCCccc
Q 039018 47 LKH-SISYNVLEGKLPTSFGRLREPRSISLSWANKS 81 (181)
Q Consensus 47 L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 81 (181)
++. ++++|.++...+..|..+++|++|++++|.+.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 445 67777776444444566677777777777653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.30 E-value=76 Score=18.95 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=15.8
Q ss_pred ccccccchh-ccccccccCCCCcccCCCCCCcEEEcC
Q 039018 41 LGNLTSLKH-SISYNVLEGKLPTSFGRLREPRSISLS 76 (181)
Q Consensus 41 l~~l~~L~~-~l~~n~~~~~~~~~~~~l~~L~~L~l~ 76 (181)
|.++.+|+. .+..+- +..-...|.++.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEc
Confidence 444555544 443332 11233445555555555554
Done!