BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039020
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 11/183 (6%)
Query: 297 VMDLLDANLEMKSRLYRDPALRYVFLMNNGRYILQKIKGSNEIHNMMGVTWC---RKRST 353
V+ L NL KS++Y DPAL +FL NN YIL+ ++ S E+ ++ VT R
Sbjct: 388 VLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKS-ELIQLVAVTQKTAERSYRE 446
Query: 354 QLRQYHKNYQRETWSRVLQCISHEGLQANGKVVK------AVLKERFKNFNALFEEIHRT 407
+ Q + YQR +W +V I+ + L VK ++KERFK FN EE+ +
Sbjct: 447 HIEQQIQTYQR-SWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKI 505
Query: 408 QSTWVVSDEQLQSELRVSISAVVTPAYRSFVGRFKQYLEGRSMDKYIKYQPEDIETLIDE 467
Q W + D + + ++R + +V Y +F+ R+ ++ +KYIKY+ E + +ID
Sbjct: 506 QKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGDMIDR 565
Query: 468 LFD 470
LFD
Sbjct: 566 LFD 568
>pdb|2PFV|A Chain A, S. Cerevisiae Exo70 With Additional Residues To 2.1
Angrstrom Resolution
Length = 563
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/413 (21%), Positives = 181/413 (43%), Gaps = 66/413 (15%)
Query: 94 SWISIFKHCYRNLFPGERKFSDAIFSEYPSTSQRLFSELAAAVITPFLS-FSEVIALTKR 152
S ++ + E+ D ++S+Y + + S++ + +I+ + F + + +
Sbjct: 177 SGMNSYTEALLGFIANEKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRS 236
Query: 153 SAERLFKF-LDMCETLNDLLTTI--DDSYSKEISQDLTSEIAVVKSQLAEAAASIFCELE 209
+ E F ++ E++ND+ ++ + + + QD T E+ V L A +
Sbjct: 237 NLENFGFFSFELVESINDVKKSLRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKA 296
Query: 210 NSIKSDQGRTPVPSGQ-VHPSTRYTMNYLKYACEYRD---------TLEEVFRFHHKNEG 259
NSI + +PS V +T TM+ L+ EY++ T E ++K +
Sbjct: 297 NSIST------IPSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKE 350
Query: 260 F---DDAPNQENHDINEHLTEMPNDDGTPKKSPFAIELIAVMDLLDANLEMKSRLYRDPA 316
+ ++A N E+H++ L+ +D +D L NLE K+++ P
Sbjct: 351 YTLQNEALNWEDHNV--LLSCFISD---------------CIDTLAVNLERKAQIALMPN 393
Query: 317 ------------------LRYVFLMNNGRYILQKIKGSNEIHNMMGVTWCRKRSTQLRQY 358
+ + LMN ++++I +E+ N+M R +L++
Sbjct: 394 QEPDVANPNSSKNKHKQRIGFFILMN--LTLVEQIVEKSEL-NLMLAGEGHSRLERLKKR 450
Query: 359 HKNYQRETWSRVL-QCISHEGLQANGKVVK--AVLKERFKNFNALFEEIHRTQSTWVVSD 415
+ +Y W + + + ++GK K +KE+F+ FN FE++ + +SD
Sbjct: 451 YISYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSD 510
Query: 416 EQLQSELRVSISAVVTPAYRSFVGRFKQYLEGRSMDKYIKYQPEDIETLIDEL 468
L+ L+ I ++V P Y F R+K ++ K+IKY P+++ T++++L
Sbjct: 511 PSLKVTLKSEIISLVMPMYERFYSRYKDSF--KNPRKHIKYTPDELTTVLNQL 561
>pdb|2B1E|A Chain A, The Structures Of Exocyst Subunit Exo70p And The Exo84p C-
Terminal Domains Reveal A Common Motif
Length = 564
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/413 (21%), Positives = 181/413 (43%), Gaps = 66/413 (15%)
Query: 94 SWISIFKHCYRNLFPGERKFSDAIFSEYPSTSQRLFSELAAAVITPFLS-FSEVIALTKR 152
S ++ + E+ D ++S+Y + + S++ + +I+ + F + + +
Sbjct: 178 SGMNSYTEALLGFIANEKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRS 237
Query: 153 SAERLFKF-LDMCETLNDLLTTI--DDSYSKEISQDLTSEIAVVKSQLAEAAASIFCELE 209
+ E F ++ E++ND+ ++ + + + QD T E+ V L A +
Sbjct: 238 NLENFGFFSFELVESINDVKKSLRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKA 297
Query: 210 NSIKSDQGRTPVPSGQ-VHPSTRYTMNYLKYACEYRD---------TLEEVFRFHHKNEG 259
NSI + +PS V +T TM+ L+ EY++ T E ++K +
Sbjct: 298 NSIST------IPSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKE 351
Query: 260 F---DDAPNQENHDINEHLTEMPNDDGTPKKSPFAIELIAVMDLLDANLEMKSRLYRDPA 316
+ ++A N E+H++ L+ +D +D L NLE K+++ P
Sbjct: 352 YTLQNEALNWEDHNV--LLSCFISD---------------CIDTLAVNLERKAQIALMPN 394
Query: 317 ------------------LRYVFLMNNGRYILQKIKGSNEIHNMMGVTWCRKRSTQLRQY 358
+ + LMN ++++I +E+ N+M R +L++
Sbjct: 395 QEPDVANPNSSKNKHKQRIGFFILMN--LTLVEQIVEKSEL-NLMLAGEGHSRLERLKKR 451
Query: 359 HKNYQRETWSRVL-QCISHEGLQANGKVVK--AVLKERFKNFNALFEEIHRTQSTWVVSD 415
+ +Y W + + + ++GK K +KE+F+ FN FE++ + +SD
Sbjct: 452 YISYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSD 511
Query: 416 EQLQSELRVSISAVVTPAYRSFVGRFKQYLEGRSMDKYIKYQPEDIETLIDEL 468
L+ L+ I ++V P Y F R+K ++ K+IKY P+++ T++++L
Sbjct: 512 PSLKVTLKSEIISLVMPMYERFYSRYKDSF--KNPRKHIKYTPDELTTVLNQL 562
>pdb|2B7M|A Chain A, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|B Chain B, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|C Chain C, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|D Chain D, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
Length = 566
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 83/395 (21%), Positives = 173/395 (43%), Gaps = 62/395 (15%)
Query: 110 ERKFSDAIFSEYPSTSQRLFSELAAAVITPFLS-FSEVIALTKRSAERLFKF-LDMCETL 167
E+ D ++S+Y + + S++ + +I+ + F + + + + E F ++ E++
Sbjct: 196 EKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESI 255
Query: 168 NDLLTTI--DDSYSKEISQDLTSEIAVVKSQLAEAAASIFCELENSIKSDQGRTPVPSGQ 225
ND+ ++ + + + QD T E+ V L A + NSI + +PS
Sbjct: 256 NDVKKSLRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKANSIST------IPSNN 309
Query: 226 -VHPSTRYTMNYLKYACEYRD---------TLEEVFRFHHKNEGF---DDAPNQENHDIN 272
V +T T + L+ EY++ T E ++K + + ++A N E+H++
Sbjct: 310 GVTEATVDTXSRLRKFSEYKNGCLGAXDNITRENWLPSNYKEKEYTLQNEALNWEDHNV- 368
Query: 273 EHLTEMPNDDGTPKKSPFAIELIAVMDLLDANLEMKSRLYRDP----------------A 316
L+ +D +D L NLE K+++ P
Sbjct: 369 -LLSCFISD---------------CIDTLAVNLERKAQIALXPNQEPDVANPNSSKNKHK 412
Query: 317 LRYVFLMNNGRYILQKIKGSNEIHNMMGVTWCRKRSTQLRQYHKNYQRETWSRVLQCISH 376
R F + ++++I +E+ N+ R +L++ + +Y W + +
Sbjct: 413 QRIGFFILXNLTLVEQIVEKSEL-NLXLAGEGHSRLERLKKRYISYXVSDWRDLTANLXD 471
Query: 377 EG-LQANGKVVK--AVLKERFKNFNALFEEIHRTQSTWVVSDEQLQSELRVSISAVVTPA 433
+ ++GK K +KE+F+ FN FE++ + +SD L+ L+ I ++V P
Sbjct: 472 SVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVXPX 531
Query: 434 YRSFVGRFKQYLEGRSMDKYIKYQPEDIETLIDEL 468
Y F R+K ++ K+IKY P+++ T++++L
Sbjct: 532 YERFYSRYKDSF--KNPRKHIKYTPDELTTVLNQL 564
>pdb|3GM1|A Chain A, Crystal Structure Of The Focal Adhesion Targeting (Fat)
Domain Of Pyk2 In Complex With Paxillin Ld4
Motif-Derived Peptides
pdb|3GM1|B Chain B, Crystal Structure Of The Focal Adhesion Targeting (Fat)
Domain Of Pyk2 In Complex With Paxillin Ld4
Motif-Derived Peptides
pdb|3GM2|A Chain A, Crystal Structure Of The Focal Adhesion Targeting (Fat)
Domain Of Pyk2
pdb|3GM3|A Chain A, Crystal Structure Of The Focal Adhesion Targeting (Fat)
Domain Of Pyk2
Length = 153
Score = 28.5 bits (62), Expect = 7.5, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 297 VMDLLDANLEMKSRLYRDPALRYVFLMNNGRYILQKIKGS 336
VM+L+ A LE+K+ L + P YV ++ N L+K+ GS
Sbjct: 28 VMELVRAVLELKNELAQLPPEGYVVVVKNVGLTLRKLIGS 67
>pdb|3U3C|A Chain A, Structural Basis For The Interaction Of Pyk2 Pat Domain
With Paxillin Ld Motifs
pdb|3U3F|A Chain A, Structural Basis For The Interaction Of Pyk2 Pat Domain
With Paxillin Ld Motifs
pdb|3U3F|B Chain B, Structural Basis For The Interaction Of Pyk2 Pat Domain
With Paxillin Ld Motifs
pdb|3U3F|C Chain C, Structural Basis For The Interaction Of Pyk2 Pat Domain
With Paxillin Ld Motifs
pdb|3U3F|D Chain D, Structural Basis For The Interaction Of Pyk2 Pat Domain
With Paxillin Ld Motifs
Length = 139
Score = 28.5 bits (62), Expect = 8.1, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 297 VMDLLDANLEMKSRLYRDPALRYVFLMNNGRYILQKIKGS 336
VM+L+ A LE+K+ L + P YV ++ N L+K+ GS
Sbjct: 18 VMELVRAVLELKNELSQLPPEGYVVVVKNVGLTLRKLIGS 57
>pdb|2LK4|A Chain A, Structural And Mechanistic Insights Into The Interaction
Between Pat Pyk2 And Paxillin Ld Motif
Length = 135
Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 297 VMDLLDANLEMKSRLYRDPALRYVFLMNNGRYILQKIKGS 336
VM+L+ A LE+K+ L + P YV ++ N L+K+ GS
Sbjct: 14 VMELVRAVLELKNELSQLPPEGYVVVVKNVGLTLRKLIGS 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,014,269
Number of Sequences: 62578
Number of extensions: 572345
Number of successful extensions: 1300
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1289
Number of HSP's gapped (non-prelim): 10
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)