Query 039020
Match_columns 481
No_of_seqs 158 out of 484
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:32:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2344 Exocyst component prot 100.0 2E-102 4E-107 833.6 50.1 441 22-479 182-622 (623)
2 PF03081 Exo70: Exo70 exocyst 100.0 3.1E-79 6.7E-84 630.6 27.9 362 92-468 1-371 (371)
3 PF06419 COG6: Conserved oligo 98.9 1.5E-05 3.2E-10 87.7 37.6 363 46-465 205-618 (618)
4 PF04129 Vps52: Vps52 / Sac2 f 97.3 0.046 1E-06 59.0 22.2 185 107-336 300-485 (508)
5 KOG3758 Uncharacterized conser 97.3 0.36 7.9E-06 51.8 31.9 54 412-465 596-651 (655)
6 KOG1961 Vacuolar sorting prote 96.8 0.85 1.8E-05 48.8 24.9 44 292-335 507-550 (683)
7 PF09763 Sec3_C: Exocyst compl 90.0 38 0.00083 38.2 28.1 215 190-439 439-693 (701)
8 PF10191 COG7: Golgi complex c 89.4 39 0.00086 38.6 20.3 131 33-180 201-335 (766)
9 PF07393 Sec10: Exocyst comple 58.6 2.1E+02 0.0045 32.4 14.4 103 32-144 128-245 (710)
10 KOG1916 Nuclear protein, conta 55.1 1.3E+02 0.0028 34.7 11.4 50 386-437 1013-1063(1283)
11 COG2733 Predicted membrane pro 52.4 92 0.002 32.3 9.1 90 358-467 290-383 (415)
12 PHA01746 hypothetical protein 49.3 7.9 0.00017 32.4 0.9 23 433-460 75-97 (131)
13 KOG3821 Heparin sulfate cell s 47.1 42 0.00092 36.1 6.0 70 386-470 96-168 (563)
14 KOG4514 Uncharacterized conser 41.4 2.9E+02 0.0063 25.5 10.6 25 19-43 114-138 (222)
15 KOG2148 Exocyst protein Sec3 [ 41.1 5.6E+02 0.012 28.7 21.8 208 193-441 608-838 (867)
16 cd07670 BAR_SNX18 The Bin/Amph 34.1 4.1E+02 0.0089 25.1 11.2 65 113-177 59-124 (207)
17 KOG1925 Rac1 GTPase effector F 31.8 6.9E+02 0.015 27.0 12.5 79 312-399 506-590 (817)
18 KOG4344 Uncharacterized conser 31.2 1.6E+02 0.0035 32.5 7.3 68 318-406 967-1037(1121)
19 PF15264 TSSC4: Tumour suppres 26.9 19 0.0004 30.8 -0.3 16 447-462 58-73 (115)
20 PF08069 Ribosomal_S13_N: Ribo 26.5 57 0.0012 24.5 2.2 24 447-470 19-42 (60)
21 KOG2047 mRNA splicing factor [ 26.1 36 0.00079 37.5 1.6 44 426-469 136-180 (835)
22 COG0233 Frr Ribosome recycling 25.1 5.6E+02 0.012 23.8 9.7 84 22-114 102-185 (187)
23 PRK00083 frr ribosome recyclin 24.7 5.6E+02 0.012 23.7 9.7 83 22-114 100-183 (185)
24 KOG1410 Nuclear transport rece 21.9 8.8E+02 0.019 27.5 10.8 55 198-253 925-979 (1082)
25 PF12210 Hrs_helical: Hepatocy 20.7 4.9E+02 0.011 21.5 10.7 80 129-210 3-84 (96)
26 KOG1936 Histidyl-tRNA syntheta 20.5 1E+02 0.0023 32.4 3.5 75 13-91 173-256 (518)
27 TIGR02553 SipD_IpaD_SspD type 20.1 6.9E+02 0.015 25.1 8.9 111 343-469 117-237 (308)
No 1
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-102 Score=833.59 Aligned_cols=441 Identities=42% Similarity=0.754 Sum_probs=409.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhHHHHHHHHHhcCCCCCChhHhhhcChHhHHHHHHhHHHHHHH
Q 039020 22 EGFPNFSTEAISNMNKIATAMISCGYEAECCMAYTCFRRNAFREVLNKLGFDSITIDDAHRMQWESLEREIGSWISIFKH 101 (481)
Q Consensus 22 ~~~~~~~~~~~~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~~L~~L~~~~~~~~~v~~~~~e~~~~~I~~wi~a~~~ 101 (481)
..++.+|++++.+|+.||++|+++||.++|+++|..+|+++++++|.+||+++++++++++|+|++++.+|.+|++++++
T Consensus 182 ~~~~~~~~~v~~dLk~Ia~~mi~~gy~~eC~~~Y~~vrk~i~~e~l~~L~~e~ls~~~vq~~~we~le~~I~~Wi~~~kv 261 (623)
T KOG2344|consen 182 IEPDLFPPDVMTDLKAIAQRMIAAGYEKECFKVYKSIRKSILDESLVNLGVEKLSIEDVQRMDWEVLEGKIKKWIKAVKV 261 (623)
T ss_pred eeccCCCchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhcCeeeccHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhhHhHHhhhcCCCCcchHHHHHHHHHHHHHHHHhhHHHHHhhccchHHHHHHhhHHHHHHhhHhhhhhhcchh
Q 039020 102 CYRNLFPGERKFSDAIFSEYPSTSQRLFSELAAAVITPFLSFSEVIALTKRSAERLFKFLDMCETLNDLLTTIDDSYSKE 181 (481)
Q Consensus 102 ~~~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~i~~ll~f~~~ia~~~r~peklf~lLdm~e~L~~~~p~~~~lf~~~ 181 (481)
++++||++|+.||++||++.......||.+|++.++++|++|+++++.++|+|||+|++||||+++.+++|+++.+|+++
T Consensus 262 ~v~~lf~~E~~Lcd~If~~~~~~~~~cF~eI~~~~~~~ll~F~eava~~kr~pEklf~iLd~y~~i~~l~p~ie~lF~~~ 341 (623)
T KOG2344|consen 262 AVSVLFEGEKKLCDQIFSDLESIVESCFPEIVKEAALQLLSFPEAVAISKRSPEKLFKLLDLYETIVELRPDIERLFSDA 341 (623)
T ss_pred HHHHHhHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhccchheeeccCCHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999975443228999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCccccHHHHHHHHHHHHhcHHHHHHHHhhccCCCCCC
Q 039020 182 ISQDLTSEIAVVKSQLAEAAASIFCELENSIKSDQGRTPVPSGQVHPSTRYTMNYLKYACEYRDTLEEVFRFHHKNEGFD 261 (481)
Q Consensus 182 ~~~~~~~~~~~~~~~L~~~~~~~f~ef~~~I~~~~~~~~~~dg~Vh~lT~~vm~yl~~L~~y~~~l~~il~~~~~~~~~~ 261 (481)
++.+++.++..++++|+++++++|.||++.|+.++++.|+|||||||||+||||||+.|++|+++|.++|...+ |...
T Consensus 342 ~~s~vr~~~~~~~~rL~~~~~~~~~efe~~I~~d~sk~pv~gG~VHpLTryvmnyl~~L~dy~~tL~~il~~~~--~~~~ 419 (623)
T KOG2344|consen 342 SCSEVRSQALSLLKRLGEGVRSIFVEFESAIRKDSSKTPVPGGGVHPLTRYVMNYLNFLADYKDTLEQLLMEDP--VDTS 419 (623)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcChhHHHHHHHHHHHHHHHHHHHHHHhccc--cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998754 2211
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHhhhHHHHHHhhhCchhhhh
Q 039020 262 DAPNQENHDINEHLTEMPNDDGTPKKSPFAIELIAVMDLLDANLEMKSRLYRDPALRYVFLMNNGRYILQKIKGSNEIHN 341 (481)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~L~~iFLmNN~~yI~~~~~~s~~l~~ 341 (481)
.+ .+.+++....++++.+++|||..|++||+.||+.|+|++|++||||||++||+++++ +++|+.
T Consensus 420 -~~-------------~~~~~~~~~~s~l~~~~~~ii~~L~~nLd~Ks~~Y~D~aL~~lFlmNN~~yiv~kvk-ss~L~~ 484 (623)
T KOG2344|consen 420 -LP-------------KSESEDESSNSLLAVHIARIILALECNLDTKSKLYKDPALSYLFLMNNLHYIVQKVK-SSELRL 484 (623)
T ss_pred -cC-------------cccccccccccHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHHHHhhHHHHHHHHh-cchHHH
Confidence 00 011223445689999999999999999999999999999999999999999999999 569999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhhHHHHHHhhcccCcCCCccccHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHH
Q 039020 342 MMGVTWCRKRSTQLRQYHKNYQRETWSRVLQCISHEGLQANGKVVKAVLKERFKNFNALFEEIHRTQSTWVVSDEQLQSE 421 (481)
Q Consensus 342 lLg~~w~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~~~~~~~r~~iKekf~~FN~~Fee~~~~q~~w~VpD~~LR~~ 421 (481)
+||++|+++|..++++|+..|++++|++|+++|.+++...+++.+|+.+||||++||++|||+|++|++|+||||+||++
T Consensus 485 llGd~wl~kh~~~~~qy~~~Y~r~sW~~vl~~L~~~~s~~~~~~~~~~~Kerfk~FN~~FeEv~k~Qs~wvV~D~~Lr~e 564 (623)
T KOG2344|consen 485 LLGDDWLRKHEEKLRQYATSYERESWGKVLSLLTDEGSSSGGKKSKEVLKERFKLFNEQFEEVYKKQSQWVVPDPKLREE 564 (623)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCHHHHHHHHHHHHHHHHHHHHhhCceecccHHHHHH
Confidence 99999999999999999999999999999999999875544457899999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhcccCCCCCcccccCHHHHHHHHHHhhCCCCCCCCCC
Q 039020 422 LRVSISAVVTPAYRSFVGRFKQYLEGRSMDKYIKYQPEDIETLIDELFDGNPMSMGRR 479 (481)
Q Consensus 422 Lr~~i~~~v~PaY~~F~~ky~~~~~~k~~~KyiKytpe~le~~l~~LF~g~~~~~~~~ 479 (481)
||.+|.++|+|+|++||+||+....++|++|||||||||||++|++||+|++.+...|
T Consensus 565 Lk~si~~~v~P~Yr~F~~r~~~~~~~k~~~kyikYtpedlE~~L~dLF~g~~~~~s~~ 622 (623)
T KOG2344|consen 565 LKISISEKVVPAYRSFYGRYRNSVSGKNPEKYIKYTPEDLENYLSDLFEGSPSSPSGR 622 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCcccccCHHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999987645899999999999999999999999998655434
No 2
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=100.00 E-value=3.1e-79 Score=630.64 Aligned_cols=362 Identities=39% Similarity=0.690 Sum_probs=316.4
Q ss_pred HHhHHHHHHHHHHhhchhhHhHHhhhcCCCCcchHHHHHHHHHHHHHHHHhhHHHHH---hhccchHHHHHHhhHHHHHH
Q 039020 92 IGSWISIFKHCYRNLFPGERKFSDAIFSEYPSTSQRLFSELAAAVITPFLSFSEVIA---LTKRSAERLFKFLDMCETLN 168 (481)
Q Consensus 92 I~~wi~a~~~~~~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~i~~ll~f~~~ia---~~~r~peklf~lLdm~e~L~ 168 (481)
|++|+.++++++..|+++|++||++||+..++.+..||.+++++++..|++|+++|+ ...++|+++|.+||||++|.
T Consensus 1 ~~~wi~~~~~~~~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~~~~ll~~~~~v~~~~~~~~~~~~lf~ll~~~~~l~ 80 (371)
T PF03081_consen 1 IKRWIQAYKVALKKLFQSERRLCDQVFPESSSIADECFAEIAKPPLLQLLNFADAVASVRNSQRSPEKLFELLDMYEALS 80 (371)
T ss_dssp T-SHHHHHHHHHHHHHHHHHHHHHHHSSCCCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHTCCCCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHH
Confidence 678999999999999999999999999987777999999999999999999999999 88899999999999999999
Q ss_pred hhHhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCCCCCCccccHHHHHHHHHHHHhcHHH
Q 039020 169 DLLTTIDDSYSKEISQDLTSEIAVVKSQLAEAAASIFCELENSIKS--DQGRTPVPSGQVHPSTRYTMNYLKYACEYRDT 246 (481)
Q Consensus 169 ~~~p~~~~lf~~~~~~~~~~~~~~~~~~L~~~~~~~f~ef~~~I~~--~~~~~~~~dg~Vh~lT~~vm~yl~~L~~y~~~ 246 (481)
++.|+++.+|.++.+..++.++.+++++|+++++++|.+|.+.|+. ++.+.+++||+|||+|++|||||+.|++|+++
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~~~~i~~~~~~~~~~p~dg~Vh~lT~~vm~yl~~L~~y~~~ 160 (371)
T PF03081_consen 81 ELLPDLDSLFSGESCESIRQEFDELLKKLREAIRKILEEFEESIKNDSDSSSSVPSDGGVHPLTSYVMNYLKRLAEYRDT 160 (371)
T ss_dssp HHHCCCHHCTCC-S-HHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGCS-TTS---HHHHHHHHHHHHHHCTHHH
T ss_pred HHhHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888999999999999999999999999999999 66655567999999999999999999999999
Q ss_pred HHHHHhhc-cCCCCCCCCCCCCccccccccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHhhh
Q 039020 247 LEEVFRFH-HKNEGFDDAPNQENHDINEHLTEMPNDDGTPKKSPFAIELIAVMDLLDANLEMKSRLYRDPALRYVFLMNN 325 (481)
Q Consensus 247 l~~il~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~L~~iFLmNN 325 (481)
|+.+|... .++|.....+.. . .+ .++.+.++++.|+.++|++|+.+||+||+.|+|++|++||||||
T Consensus 161 l~~il~~~~~~~~~~~~~~~~----~------~~--~~~~~~~~l~~~i~~ii~~L~~~Le~ks~~y~d~~l~~iFLlNN 228 (371)
T PF03081_consen 161 LESILQSDGDGNWLSESGPPS----E------SS--SSTDSQSSLSSYIADIISALESNLEAKSKSYKDPALRYIFLLNN 228 (371)
T ss_dssp HHHCCCTT-GGGGS-SS--GG----G------S-----CCHHHHHHHHHHHHHHHHHHHHHHHHCCHCTHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccccccc----c------cc--cccCccchHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999875 455654322110 0 00 01345678999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCchhhhhhhchhHHHHHHHHHHHHHHHHHHhhHHHHHHhhcccCcC---CCccccHHHHHHHHHHHHHHHH
Q 039020 326 GRYILQKIKGSNEIHNMMGVTWCRKRSTQLRQYHKNYQRETWSRVLQCISHEGLQ---ANGKVVKAVLKERFKNFNALFE 402 (481)
Q Consensus 326 ~~yI~~~~~~s~~l~~lLg~~w~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~---~~~~~~r~~iKekf~~FN~~Fe 402 (481)
+|||.+++++| +|..++|++|.+++..++++|++.|++++|+||+++|.+++.. .....+|+.+|+||++||++||
T Consensus 229 ~~yI~~~~~~s-~l~~~lg~~~~~~~~~~~~~~~~~Y~~~sW~~v~~~L~~~~~~~~~~~~~~~~~~~ke~f~~Fn~~fe 307 (371)
T PF03081_consen 229 YHYILKKLKRS-ELKDLLGDDWEQRLSSKIEQYIKSYLRSSWGPVLSCLSDDSSSSGGKLSSKERELLKEKFKKFNSAFE 307 (371)
T ss_dssp HHHHHCCCCTS-HHHHCCTTCHHHHHHHHHHHHHHHHHCHHHHHHHCTCCHHCC-T-SSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhc-chhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCccHHHHHHHHHHHHHHHH
Confidence 99999999997 9999999999999999999999999999999999999985222 1223589999999999999999
Q ss_pred HHHHhccccccCCHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCCCcccccCHHHHHHHHHHh
Q 039020 403 EIHRTQSTWVVSDEQLQSELRVSISAVVTPAYRSFVGRFKQYLEGRSMDKYIKYQPEDIETLIDEL 468 (481)
Q Consensus 403 e~~~~q~~w~VpD~~LR~~Lr~~i~~~v~PaY~~F~~ky~~~~~~k~~~KyiKytpe~le~~l~~L 468 (481)
|+|++|+.|+||||+||++||++|.++|+|+|++||+||+...| |++|||||||++||++|++|
T Consensus 308 e~~~~q~~~~vpD~~LR~~Lr~~i~~~v~p~Y~~F~~~~~~~~~--~~~Kyikyt~~~le~~l~~L 371 (371)
T PF03081_consen 308 EIYKAQKTWKVPDPELREELRREIKEKVVPAYRRFYERYRNSQF--NPEKYIKYTPEDLENMLNEL 371 (371)
T ss_dssp HHHHHHTT---S-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCSS--SHCCC-SS-HHHHHHHHHTC
T ss_pred HHHHcCcceecCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--CCCCCCccCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999998 99999999999999999986
No 3
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=98.90 E-value=1.5e-05 Score=87.68 Aligned_cols=363 Identities=13% Similarity=0.175 Sum_probs=192.9
Q ss_pred CCchHHHHHHHHHhHHHHH-HHHHhcCCCCC------ChhHhhhcChHhHHHHHHhHHHHHHHHHHhhchhhHhHHhhhc
Q 039020 46 GYEAECCMAYTCFRRNAFR-EVLNKLGFDSI------TIDDAHRMQWESLEREIGSWISIFKHCYRNLFPGERKFSDAIF 118 (481)
Q Consensus 46 g~~~e~~~~Y~~~R~~~l~-~~L~~L~~~~~------~~~~v~~~~~e~~~~~I~~wi~a~~~~~~~l~~~E~~L~~~vf 118 (481)
.+-++|.+.|+..|+..+- +.+..|..... +|+- ..-+.-.-=+.+=.|++ ...++|+.++..+|
T Consensus 205 ~lf~~~l~~~~~~R~~~l~~~F~~aLt~g~~~~~~~rPIel-~AhDP~RYvGDmLAwvH-------q~~a~E~E~l~~Lf 276 (618)
T PF06419_consen 205 VLFNYCLDEFAEARSKALLRRFLDALTRGGPGGSPSRPIEL-HAHDPLRYVGDMLAWVH-------QAIASEREFLESLF 276 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhh-hccChHHHHHHHHHHHH-------HHhhhHHHHHHHHh
Confidence 4779999999999998775 45566754422 2221 11011111123556666 56799999999999
Q ss_pred CCCCcch-H-------------HHHHHHHHHHHHH----HHhhHHHHHhhccch---HHHHHHhhHHHHHHhhHhhhhhh
Q 039020 119 SEYPSTS-Q-------------RLFSELAAAVITP----FLSFSEVIALTKRSA---ERLFKFLDMCETLNDLLTTIDDS 177 (481)
Q Consensus 119 ~~~~~~~-~-------------~~f~~i~~~~i~~----ll~f~~~ia~~~r~p---eklf~lLdm~e~L~~~~p~~~~l 177 (481)
....... . ..-..+....+.. +-.=.+.|......| -++..+|.-|.. .|..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~i~~~l~rplk~RvEQvi~se~~~i~~yki~~LL~fY~~------~~~k~ 350 (618)
T PF06419_consen 277 KFDEDEIAEGSSSGFDSNPWSEELINELLDRILEGLCRPLKIRVEQVISSEEDPITLYKIANLLSFYQM------TFSKL 350 (618)
T ss_pred cccccccccccccccccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH------HHHHH
Confidence 8532211 0 1111111111111 111122222222222 345666666653 34445
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcccCCCCCCCCCccccHHHHHHHHHHHHhcHHHHHHHHhh
Q 039020 178 YSKEISQDLTSEIAVVKSQLAEAAASIF----CELENSIKSDQGRTPVPSGQVHPSTRYTMNYLKYACEYRDTLEEVFRF 253 (481)
Q Consensus 178 f~~~~~~~~~~~~~~~~~~L~~~~~~~f----~ef~~~I~~~~~~~~~~dg~Vh~lT~~vm~yl~~L~~y~~~l~~il~~ 253 (481)
.+.++ .+...+..|.+.+.+.| ......+.......+.+|=...+.. ..|+..|. .|+..
T Consensus 351 i~~~s------~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~~~~~~~DL~PP~~l---~d~l~~L~-------~il~~ 414 (618)
T PF06419_consen 351 IGEDS------SLIETLKELQDLAQKKFFSSLRDHVAKLLRSAPEPPPADLSPPEWL---IDFLSLLR-------EILDV 414 (618)
T ss_pred cCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHH---HHHHHHHH-------HHHHH
Confidence 44332 23334444544444443 3333444443111222354444433 34444332 34443
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHhhhHHHHHHhh
Q 039020 254 HHKNEGFDDAPNQENHDINEHLTEMPNDDGTPKKSPFAIELIAVMDLLDANLEMKSRLYRDPALRYVFLMNNGRYILQKI 333 (481)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~L~~iFLmNN~~yI~~~~ 333 (481)
++..- .+.+ +......+...+..+|+-+..+.+.-+....++.-+.||++|.+.+|...+
T Consensus 415 ~~~s~-------------------~~~~-~~~~~~~~~~Il~~~idpll~~c~~~a~~L~~~~~~~if~iNCl~~i~s~L 474 (618)
T PF06419_consen 415 YDSSL-------------------SPDD-DRENDNDFKPILDEPIDPLLQMCQKSASPLAPKDDRAIFMINCLDLIQSTL 474 (618)
T ss_pred hhccc-------------------CCcc-chhhhhHHHHHHHHHhHHHHHHHHHHhhccCChhhhHHHHHHhHHHHHHHc
Confidence 32110 0000 111125688888889999988888888877766668999999999999988
Q ss_pred hCchhhhhhhchhHHHHHHHHHHHHHHHHH---------HhhHHHHHHhhc----c-cCcC---CCccccHHHHHHHHHH
Q 039020 334 KGSNEIHNMMGVTWCRKRSTQLRQYHKNYQ---------RETWSRVLQCIS----H-EGLQ---ANGKVVKAVLKERFKN 396 (481)
Q Consensus 334 ~~s~~l~~lLg~~w~~~~~~~~~~~~~~Y~---------~~sW~~vl~~L~----~-~~~~---~~~~~~r~~iKekf~~ 396 (481)
..-+ . ...|.+....+++.+...-. +..-+++...+. + ++.. -....+.+.++.-..+
T Consensus 475 ~~~~-~----~~~~~e~L~~~id~~~~~Lv~~Q~~~lL~~sGL~~~~~~l~~i~~~~~~~~pls~~p~~~~~~l~~a~~k 549 (618)
T PF06419_consen 475 SPFE-F----TSERVEELQDQIDAHVDTLVEEQASFLLERSGLGDLYNALNMIFFDYDMYGPLSENPGMDPDSLSNALQK 549 (618)
T ss_pred cChH-h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHhhccCCcccCCcccCccCCHHHHHHHHHH
Confidence 8642 1 12344444444333333221 223344445554 1 1111 1122455666555555
Q ss_pred HHHHHHHH-HHhccc-cccCCHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCCCcccccCHHHHHHHH
Q 039020 397 FNALFEEI-HRTQST-WVVSDEQLQSELRVSISAVVTPAYRSFVGRFKQYLEGRSMDKYIKYQPEDIETLI 465 (481)
Q Consensus 397 FN~~Fee~-~~~q~~-w~VpD~~LR~~Lr~~i~~~v~PaY~~F~~ky~~~~~~k~~~KyiKytpe~le~~l 465 (481)
|+.-+-.. .-.|.. -.+.+|.+|+.++......++-+|..||+...+...+-. .-+..||++|..+|
T Consensus 550 ld~fL~sa~~d~~~~L~~L~Sp~l~~~I~~~a~~~f~~~Y~~v~~~v~d~~n~y~--sl~~~tpeeI~~LL 618 (618)
T PF06419_consen 550 LDDFLPSALTDAQPNLFKLQSPKLRDDIRERAFERFCKAYEKVYEAVMDPDNGYE--SLFPRTPEEIRTLL 618 (618)
T ss_pred HHHHHcccchhhhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhChhcccc--cccCCCHHHHhhcC
Confidence 54444322 122333 448899999999999999999999999998875432111 35679999998764
No 4
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.29 E-value=0.046 Score=58.99 Aligned_cols=185 Identities=17% Similarity=0.141 Sum_probs=101.3
Q ss_pred chhhHhHHhhhcCCCCcchHHHHHHHHHHHHHHHHhhHHHHHhhccchHHHHHHhhHHHHHHhhHhhhhhhcchhhhHHH
Q 039020 107 FPGERKFSDAIFSEYPSTSQRLFSELAAAVITPFLSFSEVIALTKRSAERLFKFLDMCETLNDLLTTIDDSYSKEISQDL 186 (481)
Q Consensus 107 ~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~i~~ll~f~~~ia~~~r~peklf~lLdm~e~L~~~~p~~~~lf~~~~~~~~ 186 (481)
..+|+..|.+-|.........+|.+|-.+++..+..|.+.......++ +.+|-|..-.....-.+.. ..+..+
T Consensus 300 ~t~Ey~F~~~FF~~~~~~~~~if~~If~~t~~~~~~~~~~~l~~~~D~---iglll~Irl~~~~~~~~~~----R~ip~l 372 (508)
T PF04129_consen 300 ATSEYLFISEFFSGSGDAAEDIFNQIFEPTFSLLQEFTEQLLSNSYDA---IGLLLCIRLNQRYQFEMQR----RRIPVL 372 (508)
T ss_pred hhHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHHHHHHh----CCCCch
Confidence 578999999999875556677888888888888888887643322332 3333332222222111111 000001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CCCCCccccHHHHHHHHHHHHhcHHHHHHHHhhccCCCCCCCCCC
Q 039020 187 TSEIAVVKSQLAEAAASIFCELENSIKSDQGRTP-VPSGQVHPSTRYTMNYLKYACEYRDTLEEVFRFHHKNEGFDDAPN 265 (481)
Q Consensus 187 ~~~~~~~~~~L~~~~~~~f~ef~~~I~~~~~~~~-~~dg~Vh~lT~~vm~yl~~L~~y~~~l~~il~~~~~~~~~~~~~~ 265 (481)
-.-+..+...|=.....++..=.++|+.-..+.. .++.+.|.+|+.--.|+..|. .+-...
T Consensus 373 d~y~~~~~~~LWprF~~i~d~nieSlk~~~~~~~~~~~~~PH~itrRyaef~~sll-------~L~~~~----------- 434 (508)
T PF04129_consen 373 DSYLNSLLMLLWPRFQKIMDANIESLKKADPKKLGSIDTRPHYITRRYAEFLSSLL-------KLSSEH----------- 434 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCccCChHHHHHHHHHHHHHH-------HHhccC-----------
Confidence 1111222222222222333333445554333222 257788988876555544332 222110
Q ss_pred CCccccccccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHhhhHHHHHHhhhCc
Q 039020 266 QENHDINEHLTEMPNDDGTPKKSPFAIELIAVMDLLDANLEMKSRLYRDPALRYVFLMNNGRYILQKIKGS 336 (481)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~L~~iFLmNN~~yI~~~~~~s 336 (481)
+...+...+..+-..++.-|..-|+.++++..+.+||.||+.+|+..+...
T Consensus 435 --------------------~~~~~~~~l~~L~~~~~~ll~~~s~~~~~~k~~~iFLiNNY~lIl~iL~~~ 485 (508)
T PF04129_consen 435 --------------------PDEQLEPSLNRLRREVEDLLTRLSKEFKDRKEREIFLINNYDLILSILSER 485 (508)
T ss_pred --------------------chhhHHHHHHHHHHHHHHHHHHHHHhcccccccceehHHHHHHHHHHHHhc
Confidence 011144455555555555556667778888889999999999999988853
No 5
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.36 Score=51.77 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=43.6
Q ss_pred ccCCHHHHHHHHHHHHHHhHHHHHHHHHHhhhccc-CCCC-CcccccCHHHHHHHH
Q 039020 412 VVSDEQLQSELRVSISAVVTPAYRSFVGRFKQYLE-GRSM-DKYIKYQPEDIETLI 465 (481)
Q Consensus 412 ~VpD~~LR~~Lr~~i~~~v~PaY~~F~~ky~~~~~-~k~~-~KyiKytpe~le~~l 465 (481)
.+.-|.+|++++....+.++-+|..+|++-.+..- -+-| +.-++++|+++...+
T Consensus 596 ~l~sp~~r~~i~kr~~~~~~~aY~~i~~al~~~~ngy~dPve~ll~~~~dq~~tll 651 (655)
T KOG3758|consen 596 QLTSPMVRDEICKRSAKKFVLAYEIIYKALINPYNGYKDPVESLLHFSPDQVDTLL 651 (655)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCChHHHHhcCCHHHhcccc
Confidence 34579999999999999999999999999886543 4556 566788888887665
No 6
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.78 E-value=0.85 Score=48.84 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCchhhHHHHhhhHHHHHHhhhC
Q 039020 292 IELIAVMDLLDANLEMKSRLYRDPALRYVFLMNNGRYILQKIKG 335 (481)
Q Consensus 292 ~~i~~ii~~L~~~Le~ksk~y~d~~L~~iFLmNN~~yI~~~~~~ 335 (481)
..+..+....+.-+..-++.++++--+.+||.||+.+|..-+..
T Consensus 507 ~ll~~l~~~ve~fl~rmak~~~~~K~q~vFLiNNYdlil~vL~e 550 (683)
T KOG1961|consen 507 RLLERLQMEVESFLLRMAKLFPTRKQQLVFLINNYDLILGVLME 550 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccceeeeeccHHHHHHHHHh
Confidence 33444555555566677888888889999999999999987764
No 7
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=89.99 E-value=38 Score=38.20 Aligned_cols=215 Identities=13% Similarity=0.176 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hhcc-cCCCCCCC-CCccccHHHHHHHHHHHHhcHHHHHHHHhhccCCCCCCCCCCC
Q 039020 190 IAVVKSQLAEAAASIFCELENS-IKSD-QGRTPVPS-GQVHPSTRYTMNYLKYACEYRDTLEEVFRFHHKNEGFDDAPNQ 266 (481)
Q Consensus 190 ~~~~~~~L~~~~~~~f~ef~~~-I~~~-~~~~~~~d-g~Vh~lT~~vm~yl~~L~~y~~~l~~il~~~~~~~~~~~~~~~ 266 (481)
+..++.++...+.+.|..|.+. |+.- ..+...-. .| |+.|++.+..|-..++.++......
T Consensus 439 l~~~L~~l~~~~k~~f~~fv~~Qi~~ie~~k~~~k~r~G-------Vl~~i~~fp~f~~~~E~~~~~~~~~--------- 502 (701)
T PF09763_consen 439 LSNLLQKLQVRLKRLFDKFVDEQIKSIEETKVSKKKRKG-------VLPFIKKFPEFVKRVESMFSGAERA--------- 502 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCc-------cchHHHHHHHHHHHHHHHHcccccc---------
Confidence 4556677777788888888643 3321 12222211 24 4456666666666777777532110
Q ss_pred CccccccccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCC-----------CchhhHHHHhhhHHHHHHhhhC
Q 039020 267 ENHDINEHLTEMPNDDGTPKKSPFAIELIAVMDLLDANLEMKSRLYR-----------DPALRYVFLMNNGRYILQKIKG 335 (481)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~-----------d~~L~~iFLmNN~~yI~~~~~~ 335 (481)
......+-.....++.++...|+..++.-+ ...-.+|.++=|+||+...+..
T Consensus 503 -----------------~~~r~~vd~aY~kl~~a~~~~l~~~a~~~~~~~~~~~~~dk~~~~~~v~~leN~~~~~e~l~~ 565 (701)
T PF09763_consen 503 -----------------REDRSLVDKAYEKLVRAMFDSLERIAKLSPKNSGSQDPEDKEKLNYHVVLLENYHHFYEELSQ 565 (701)
T ss_pred -----------------chHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCccccccchhhHHHHHHHHHHHHHHhh
Confidence 011234666777888899999999886432 2455899999999999998874
Q ss_pred chhhhhhhchhHHHHHHHHHHHHHHHHH----HhhHHHHHHhhccc-----CcC---C--CccccHHHHHHHHHH-----
Q 039020 336 SNEIHNMMGVTWCRKRSTQLRQYHKNYQ----RETWSRVLQCISHE-----GLQ---A--NGKVVKAVLKERFKN----- 396 (481)
Q Consensus 336 s~~l~~lLg~~w~~~~~~~~~~~~~~Y~----~~sW~~vl~~L~~~-----~~~---~--~~~~~r~~iKekf~~----- 396 (481)
- .....| +.|.++-....+++...|+ +..++++...+..- ... + ....+|+.+|.-++.
T Consensus 566 ~-~~~~~l-~~~~~~A~~~~~~~~~~Y~~~~l~r~~~kL~~F~~gve~l~~~~~~~ei~~~~~ySk~~l~kvl~~y~~ke 643 (701)
T PF09763_consen 566 L-KINSVL-EEFRKEAKQIYDEHLEAYVTFLLRRPFGKLLDFFEGVEALLQTVSPEEISYQAAYSKQELKKVLKSYPSKE 643 (701)
T ss_pred c-cchhhH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccCchhcccchhccHHHHHHHHHhCChHH
Confidence 2 221222 4565555555555555554 44556666554320 111 1 112356666655555
Q ss_pred HHHHHHHHHHhccccc-------cCCHHHHHHHHHHHHHHhHHHHHHHHH
Q 039020 397 FNALFEEIHRTQSTWV-------VSDEQLQSELRVSISAVVTPAYRSFVG 439 (481)
Q Consensus 397 FN~~Fee~~~~q~~w~-------VpD~~LR~~Lr~~i~~~v~PaY~~F~~ 439 (481)
.-...+.+|++-..-- ..+..|-+.+=.++.+..+-.|.+|++
T Consensus 644 v~k~i~~l~krveKHf~~~~~~~~~~~~Ll~~vW~~~q~~~i~~~~~l~~ 693 (701)
T PF09763_consen 644 VRKGIEALYKRVEKHFSRDADDPSFEEDLLQVVWSAMQEEFIRQYERLET 693 (701)
T ss_pred HHHHHHHHHHHHHHHcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777633333 235666666666666666666665553
No 8
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=89.37 E-value=39 Score=38.56 Aligned_cols=131 Identities=15% Similarity=0.307 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHhHHHHHHHHHhcCCCCCChhHhhhcChHhHHHHHHhHHHHHHHHHHhhchhhHh
Q 039020 33 SNMNKIATAMISCGYEAECCMAYTCFRRNAFREVLNKLGFDSITIDDAHRMQWESLEREIGSWISIFKHCYRNLFPGERK 112 (481)
Q Consensus 33 ~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~~L~~L~~~~~~~~~v~~~~~e~~~~~I~~wi~a~~~~~~~l~~~E~~ 112 (481)
...+...+.+..-|...+..+.|.++|+..+.+.=........ ......|+..+--.+-.++..|.+
T Consensus 201 ~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~~-------------~~~~~~~L~~fyd~ll~~l~~E~~ 267 (766)
T PF10191_consen 201 DAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQSDQ-------------SQSFAEWLPSFYDELLSLLHQELK 267 (766)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555888888999999998776543222221100 024556666665555578899999
Q ss_pred HHhhhcCCCCcchHHHHHHHHHHHHHHHH-hhHHHHH-hhccc-hH-HHHHHhhHHHHHHhhHhhhhhhcch
Q 039020 113 FSDAIFSEYPSTSQRLFSELAAAVITPFL-SFSEVIA-LTKRS-AE-RLFKFLDMCETLNDLLTTIDDSYSK 180 (481)
Q Consensus 113 L~~~vf~~~~~~~~~~f~~i~~~~i~~ll-~f~~~ia-~~~r~-pe-klf~lLdm~e~L~~~~p~~~~lf~~ 180 (481)
-|.+||+.... +...+....+..|. +|...+. ..++. |+ ++..++++|.+-....-.++.++..
T Consensus 268 w~~~vF~~~~~----~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~ 335 (766)
T PF10191_consen 268 WCSQVFPDESP----VLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSS 335 (766)
T ss_pred HHHHHcCCchh----HHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999997333 22222222222222 1222222 11222 22 4777777777666655555555443
No 9
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=58.64 E-value=2.1e+02 Score=32.41 Aligned_cols=103 Identities=15% Similarity=0.300 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHhHHHHH-HHHHhcCCCCCChhHhhhcChHhHH----------HHHHhHHHHHH
Q 039020 32 ISNMNKIATAMISCGYEAECCMAYTCFRRNAFR-EVLNKLGFDSITIDDAHRMQWESLE----------REIGSWISIFK 100 (481)
Q Consensus 32 ~~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~-~~L~~L~~~~~~~~~v~~~~~e~~~----------~~I~~wi~a~~ 100 (481)
...++.+|..|..-+.+..|++.|++.+.-..+ ..+.. ......+ -.|+.+. .........+.
T Consensus 128 ~~~M~~~A~vL~~fngg~~~i~~fi~k~~~f~~~~~~~~--~~~~~~~----~~~~~l~d~~~~~~~~~~~l~~~~~~i~ 201 (710)
T PF07393_consen 128 YERMKEFAKVLLEFNGGSSCIDFFINKHEFFIDEDQLDE--SNGFEDE----EIWEKLSDPDSHPPINEESLDAFFEDIR 201 (710)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHhChhhhhhhhhcc--ccccchh----HHHHhccCcccccccchHHHHHHHHHHH
Confidence 456777778887777778899999998865542 11200 0000000 0122111 12233333333
Q ss_pred HHHHhhchhhHhHHhhhcCCCCcc----hHHHHHHHHHHHHHHHHhhH
Q 039020 101 HCYRNLFPGERKFSDAIFSEYPST----SQRLFSELAAAVITPFLSFS 144 (481)
Q Consensus 101 ~~~~~l~~~E~~L~~~vf~~~~~~----~~~~f~~i~~~~i~~ll~f~ 144 (481)
..+..|.++.+.||+....+ ...+|.+.+.+-+..+|+-+
T Consensus 202 ----~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~~I~~~i~~lL~~a 245 (710)
T PF07393_consen 202 ----DVINEESKIIDRVFPNPEPVMQKFIERVFEQVIQEYIESLLEEA 245 (710)
T ss_pred ----HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999874444 24466666666666555544
No 10
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=55.06 E-value=1.3e+02 Score=34.68 Aligned_cols=50 Identities=26% Similarity=0.283 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhccccccC-CHHHHHHHHHHHHHHhHHHHHHH
Q 039020 386 VKAVLKERFKNFNALFEEIHRTQSTWVVS-DEQLQSELRVSISAVVTPAYRSF 437 (481)
Q Consensus 386 ~r~~iKekf~~FN~~Fee~~~~q~~w~Vp-D~~LR~~Lr~~i~~~v~PaY~~F 437 (481)
.++.|-+..|.-| |++++.+|-.-.+. ...|.+.+|.+....|||+|.+=
T Consensus 1013 ~kenI~ql~KSkn--l~dtvar~i~~~~Qtsg~lQ~a~resm~SsviPafEKS 1063 (1283)
T KOG1916|consen 1013 GKENINQLLKSKN--LEDTVARQIQAQFQTSGPLQEALRESMESSVIPAFEKS 1063 (1283)
T ss_pred HHHHHHHHHhhcc--HHHHHHHHHHHHHhccchHHHHHHHHhhhhccHHHHHH
Confidence 3455555555555 77776655433332 12299999999999999999763
No 11
>COG2733 Predicted membrane protein [Function unknown]
Probab=52.44 E-value=92 Score=32.30 Aligned_cols=90 Identities=10% Similarity=0.203 Sum_probs=58.7
Q ss_pred HHHHHHHhhHHHHHHhhcccCcCCCccccHHHHH-HHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHH---HHhHHH
Q 039020 358 YHKNYQRETWSRVLQCISHEGLQANGKVVKAVLK-ERFKNFNALFEEIHRTQSTWVVSDEQLQSELRVSIS---AVVTPA 433 (481)
Q Consensus 358 ~~~~Y~~~sW~~vl~~L~~~~~~~~~~~~r~~iK-ekf~~FN~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~---~~v~Pa 433 (481)
.+..|....|+....++..+--. +-..++ -.++.|+.-+|++. .|++||.+|..-+. +.+++-
T Consensus 290 ~i~~~~~~~w~~~~~~l~~D~e~-----~~s~l~~~l~~~~~~~Ge~l~--------~D~~lr~kln~~~~~aa~~l~e~ 356 (415)
T COG2733 290 AIATAAGDMWTSLSEWLKEDYES-----EDSMLRKRLARAVQSVGEELI--------ADDALRAKLNEHLVQAAERLAEE 356 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcccC-----chhHHHHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999865322 112233 33566777777764 49999999976543 345666
Q ss_pred HHHHHHHhhhcccCCCCCcccccCHHHHHHHHHH
Q 039020 434 YRSFVGRFKQYLEGRSMDKYIKYQPEDIETLIDE 467 (481)
Q Consensus 434 Y~~F~~ky~~~~~~k~~~KyiKytpe~le~~l~~ 467 (481)
|..++.++-.- .-=+|+.+++.++|..
T Consensus 357 ~~~~it~~I~d-------Tv~~wD~~elsr~iel 383 (415)
T COG2733 357 KHAEITKHISD-------TVKRWDAEELSRQIEL 383 (415)
T ss_pred HhHHHHHHHHH-------HHhhcCHHHHHHHHHH
Confidence 66666665421 1125888998888754
No 12
>PHA01746 hypothetical protein
Probab=49.31 E-value=7.9 Score=32.38 Aligned_cols=23 Identities=22% Similarity=0.817 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhcccCCCCCcccccCHHH
Q 039020 433 AYRSFVGRFKQYLEGRSMDKYIKYQPED 460 (481)
Q Consensus 433 aY~~F~~ky~~~~~~k~~~KyiKytpe~ 460 (481)
+-..|++||.+.+ +|||||+|.+
T Consensus 75 lIa~FLeKYS~~L-----nkYVkFs~~n 97 (131)
T PHA01746 75 LIAEFLEKYSDFL-----NEYVKFTPRN 97 (131)
T ss_pred HHHHHHHHHHHHH-----HHHeeeccCC
Confidence 3456777776544 3777777743
No 13
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=47.14 E-value=42 Score=36.14 Aligned_cols=70 Identities=20% Similarity=0.356 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHhHHHHHHHHHHhhhcc---cCCCCCcccccCHHHHH
Q 039020 386 VKAVLKERFKNFNALFEEIHRTQSTWVVSDEQLQSELRVSISAVVTPAYRSFVGRFKQYL---EGRSMDKYIKYQPEDIE 462 (481)
Q Consensus 386 ~r~~iKekf~~FN~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~PaY~~F~~ky~~~~---~~k~~~KyiKytpe~le 462 (481)
-|-.+-.+.+.|++.|+|+.+. -.+....+..-.|+++|-...... |++ ..-|..++-+.+|
T Consensus 96 Lr~~l~s~~r~F~E~f~ell~~--------------ae~~l~~mF~~tYg~ly~qn~~~~~dlFte-l~~y~~~~~~nle 160 (563)
T KOG3821|consen 96 LRFVLASNARKFDEFFLELLRN--------------AENSLNAMFSKTYGSLYPQNAELFNDLFTE-LKLYYVGSNVNLE 160 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-HHHHhccccCCHH
Confidence 3556777889999999999876 233555677778888886654432 232 2367778889999
Q ss_pred HHHHHhhC
Q 039020 463 TLIDELFD 470 (481)
Q Consensus 463 ~~l~~LF~ 470 (481)
++|++||.
T Consensus 161 e~l~eff~ 168 (563)
T KOG3821|consen 161 ETLNEFFA 168 (563)
T ss_pred HHHHHHHH
Confidence 99999985
No 14
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.37 E-value=2.9e+02 Score=25.52 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=20.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
Q 039020 19 NEDEGFPNFSTEAISNMNKIATAMI 43 (481)
Q Consensus 19 ~~~~~~~~~~~~~~~~L~~Ia~~m~ 43 (481)
+....+|.+.|.++.+|...++.+.
T Consensus 114 ~~s~~ip~vDp~VL~DlE~~~~el~ 138 (222)
T KOG4514|consen 114 IQSRNIPEVDPSVLSDLELEAQELA 138 (222)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHH
Confidence 4556778888999999998888875
No 15
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.10 E-value=5.6e+02 Score=28.70 Aligned_cols=208 Identities=13% Similarity=0.147 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccC--CCCC-CCCCccccHHHHHHHHHHHHhcHHHHHHHHhhccCCCCCCCCCCCCcc
Q 039020 193 VKSQLAEAAASIFCELENSIKSDQG--RTPV-PSGQVHPSTRYTMNYLKYACEYRDTLEEVFRFHHKNEGFDDAPNQENH 269 (481)
Q Consensus 193 ~~~~L~~~~~~~f~ef~~~I~~~~~--~~~~-~dg~Vh~lT~~vm~yl~~L~~y~~~l~~il~~~~~~~~~~~~~~~~~~ 269 (481)
.+..+.-.+..-|..|...-..+.. +... .-+||-| |+-+...+....+.++....
T Consensus 608 tlgsllv~VkrqFdrfiq~qc~qieevki~kksk~gILP-------yv~rFenfa~raE~if~nae-------------- 666 (867)
T KOG2148|consen 608 TLGSLLVRVKRQFDRFIQNQCSQIEEVKIAKKSKIGILP-------YVFRFENFARRAEIIFENAE-------------- 666 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-------cHHHHHHHHHHHHHHHhhhh--------------
Confidence 3344444556667666542221111 1111 1345544 55566667777888887432
Q ss_pred ccccccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHhhhHHHHHHhhhCchhhhhhhchhHHH
Q 039020 270 DINEHLTEMPNDDGTPKKSPFAIELIAVMDLLDANLEMKSRLYRDPALRYVFLMNNGRYILQKIKGSNEIHNMMGVTWCR 349 (481)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~L~~iFLmNN~~yI~~~~~~s~~l~~lLg~~w~~ 349 (481)
..+.+-.....++.++..+++.-|..|. .+-+.+-+|-|+|++...+- +|+...-+.--.
T Consensus 667 ----------------rRtdlekaYtklvravfvgiek~Aqq~p-Ktp~dVv~mENyh~~y~tLs---~Lkis~lda~kk 726 (867)
T KOG2148|consen 667 ----------------RRTDLEKAYTKLVRAVFVGIEKIAQQDP-KTPADVVLMENYHHFYATLS---DLKISCLDAAKK 726 (867)
T ss_pred ----------------hcchHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHhhHHHHHHHHH---HHhccchhHHHH
Confidence 1234556667888888889999888776 34578899999999987663 343322222222
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhcc--cCcC--C-Cc----------cccHHHHHHHHH----H-HHHHHHHHHHhcc
Q 039020 350 KRSTQLRQYHKNYQRETWSRVLQCISH--EGLQ--A-NG----------KVVKAVLKERFK----N-FNALFEEIHRTQS 409 (481)
Q Consensus 350 ~~~~~~~~~~~~Y~~~sW~~vl~~L~~--~~~~--~-~~----------~~~r~~iKekf~----~-FN~~Fee~~~~q~ 409 (481)
.+.+....+.+.|+..+.|..+..|.. +|.+ + .| ..+|..++.-.+ + --..+|.+|++=.
T Consensus 727 eaka~~~dhl~ayV~~~~GrPLekln~Ffe~v~~~vaqGirpeeiSYQ~aFsk~elrkvi~qypgkEVkKglenlYKKve 806 (867)
T KOG2148|consen 727 EAKALYADHLAAYVKESMGRPLEKLNTFFEGVNNKVAQGIRPEEISYQLAFSKQELRKVIKQYPGKEVKKGLENLYKKVE 806 (867)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHhhHHHHhcCCChhhhhHHHHhhHHHHHHHHHHcchhhHHHHHHHHHHHHH
Confidence 333455567888888888888877753 2211 0 00 012222222111 1 3446777777643
Q ss_pred ccccCCHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 039020 410 TWVVSDEQLQSELRVSISAVVTPAYRSFVGRF 441 (481)
Q Consensus 410 ~w~VpD~~LR~~Lr~~i~~~v~PaY~~F~~ky 441 (481)
.--+....|-..+=.+.++-.+--|..|-+.-
T Consensus 807 KnL~aeenLLqvvW~~mqeeFi~qy~~f~~lI 838 (867)
T KOG2148|consen 807 KNLLAEENLLQVVWHKMQEEFIDQYESFEQLI 838 (867)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344666666666666666666676665543
No 16
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.09 E-value=4.1e+02 Score=25.12 Aligned_cols=65 Identities=9% Similarity=0.040 Sum_probs=35.2
Q ss_pred HHhhhcCCCCcchHHHHHHHHHHHHHHHHhhHHHHHh-hccchHHHHHHhhHHHHHHhhHhhhhhh
Q 039020 113 FSDAIFSEYPSTSQRLFSELAAAVITPFLSFSEVIAL-TKRSAERLFKFLDMCETLNDLLTTIDDS 177 (481)
Q Consensus 113 L~~~vf~~~~~~~~~~f~~i~~~~i~~ll~f~~~ia~-~~r~peklf~lLdm~e~L~~~~p~~~~l 177 (481)
.+.+.|..++.....-+++.+..+-..+-..|+.++. .+.+-.-+...|..|.-+....|++-.+
T Consensus 59 ~LsqaF~~d~~~~s~~L~~Av~~tg~~y~~IG~~faeQpk~Dl~Pl~d~L~~Y~G~L~~fPDii~v 124 (207)
T cd07670 59 GLSQAFELDQQAFSAGLNQAIAFTGEAYEAIGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIHV 124 (207)
T ss_pred HHHHHHccCCcccchHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCccccCCchHHH
Confidence 3455665543344445555555555556666776663 3334444555555666555555655444
No 17
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=31.83 E-value=6.9e+02 Score=27.01 Aligned_cols=79 Identities=15% Similarity=0.326 Sum_probs=45.7
Q ss_pred CCCchhhHHHHhhhHHHHHHhhhCchhhhhhhchhH------HHHHHHHHHHHHHHHHHhhHHHHHHhhcccCcCCCccc
Q 039020 312 YRDPALRYVFLMNNGRYILQKIKGSNEIHNMMGVTW------CRKRSTQLRQYHKNYQRETWSRVLQCISHEGLQANGKV 385 (481)
Q Consensus 312 y~d~~L~~iFLmNN~~yI~~~~~~s~~l~~lLg~~w------~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~~~~~~ 385 (481)
.||+.-++-.+--=..||+...-.|++|++-+|.-- .+++...+-|--... .+||..+-++=..+
T Consensus 506 VKDtV~KqsLlhHlc~~vVE~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrC-KaSWe~L~~Iakhe-------- 576 (817)
T KOG1925|consen 506 VKDTVRKQSLLHHLCSLVVETFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRC-KASWESLRSIAKHE-------- 576 (817)
T ss_pred hcchHHHHHHHHHHHHHHHHhCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHh-hHHHHHHHHHHhhh--------
Confidence 466666666666667777777777778888777521 122222222222222 37898776654443
Q ss_pred cHHHHHHHHHHHHH
Q 039020 386 VKAVLKERFKNFNA 399 (481)
Q Consensus 386 ~r~~iKekf~~FN~ 399 (481)
-+..+|.|+..|-.
T Consensus 577 ~~p~l~~r~~~fl~ 590 (817)
T KOG1925|consen 577 LAPALRARLTHFLD 590 (817)
T ss_pred ccHHHHHHHHHHHH
Confidence 34567888877654
No 18
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.20 E-value=1.6e+02 Score=32.51 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=36.8
Q ss_pred hHHHHhhhHH-HHHHhhhCchhhhh--hhchhHHHHHHHHHHHHHHHHHHhhHHHHHHhhcccCcCCCccccHHHHHHHH
Q 039020 318 RYVFLMNNGR-YILQKIKGSNEIHN--MMGVTWCRKRSTQLRQYHKNYQRETWSRVLQCISHEGLQANGKVVKAVLKERF 394 (481)
Q Consensus 318 ~~iFLmNN~~-yI~~~~~~s~~l~~--lLg~~w~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~~~~~~~r~~iKekf 394 (481)
.-+|+.||+| ||..++-.|+.+.- -.|+. +....+..-...|+ +|-+ .+=.++++|
T Consensus 967 kLiffiNnLHahIMeailhStgleFehqieEa---KdldeLiiiHdehL--atih----------------dhClLrdef 1025 (1121)
T KOG4344|consen 967 KLIFFINNLHAHIMEAILHSTGLEFEHQIEEA---KDLDELIIIHDEHL--ATIH----------------DHCLLRDEF 1025 (1121)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHhhh---cCHHHHHHHHHHHH--HHHH----------------HhhhHHHHH
Confidence 3689999986 78877766643321 12211 11112222233443 4543 233567778
Q ss_pred HHHHHHHHHHHH
Q 039020 395 KNFNALFEEIHR 406 (481)
Q Consensus 395 ~~FN~~Fee~~~ 406 (481)
+.|-.+.+.++.
T Consensus 1026 kafkeAidkifh 1037 (1121)
T KOG4344|consen 1026 KAFKEAIDKIFH 1037 (1121)
T ss_pred HHHHHHHHHHHH
Confidence 888888777643
No 19
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=26.91 E-value=19 Score=30.82 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=14.4
Q ss_pred CCCCCcccccCHHHHH
Q 039020 447 GRSMDKYIKYQPEDIE 462 (481)
Q Consensus 447 ~k~~~KyiKytpe~le 462 (481)
-+||+||.|||-+++.
T Consensus 58 v~nP~KwTkYSL~dv~ 73 (115)
T PF15264_consen 58 VRNPEKWTKYSLDDVS 73 (115)
T ss_pred cCCcccceeeecCCCc
Confidence 6899999999999883
No 20
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=26.50 E-value=57 Score=24.47 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=15.2
Q ss_pred CCCCCcccccCHHHHHHHHHHhhC
Q 039020 447 GRSMDKYIKYQPEDIETLIDELFD 470 (481)
Q Consensus 447 ~k~~~KyiKytpe~le~~l~~LF~ 470 (481)
.+.+-.++++++|+||++|-+|-.
T Consensus 19 ~~~~P~W~~~~~~eVe~~I~klak 42 (60)
T PF08069_consen 19 RRSPPSWLKYSPEEVEELIVKLAK 42 (60)
T ss_dssp -SS--TT--S-HHHHHHHHHHHCC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHH
Confidence 344458999999999999998854
No 21
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=26.14 E-value=36 Score=37.49 Aligned_cols=44 Identities=25% Similarity=0.238 Sum_probs=33.0
Q ss_pred HHHHhHHHHHHHHHHhhhccc-CCCCCcccccCHHHHHHHHHHhh
Q 039020 426 ISAVVTPAYRSFVGRFKQYLE-GRSMDKYIKYQPEDIETLIDELF 469 (481)
Q Consensus 426 i~~~v~PaY~~F~~ky~~~~~-~k~~~KyiKytpe~le~~l~~LF 469 (481)
--..|.|.|-+|++.++--.. .+--..|+|+.|++.|+.|.-|=
T Consensus 136 qH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 136 QHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLA 180 (835)
T ss_pred hhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345789999999998764322 23335899999999999987663
No 22
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=25.10 E-value=5.6e+02 Score=23.84 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=54.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhHHHHHHHHHhcCCCCCChhHhhhcChHhHHHHHHhHHHHHHH
Q 039020 22 EGFPNFSTEAISNMNKIATAMISCGYEAECCMAYTCFRRNAFREVLNKLGFDSITIDDAHRMQWESLEREIGSWISIFKH 101 (481)
Q Consensus 22 ~~~~~~~~~~~~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~~L~~L~~~~~~~~~v~~~~~e~~~~~I~~wi~a~~~ 101 (481)
.+||.++.+.-.+|-.+++... .+.--+-..+|+.+.++.-+...-..++-+++.+.+ +.++.....|+.-+.-
T Consensus 102 v~~P~lTeErRkelvK~~k~~~-----EeakvaiRniRrda~d~iKK~~K~~~isEDe~k~~e-~~iQKlTd~yi~~iD~ 175 (187)
T COG0233 102 VPLPPLTEERRKELVKVAKKYA-----EEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAE-EEIQKLTDEYIKKIDE 175 (187)
T ss_pred ecCCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 7889999999999999888764 454556677899888765544443335555555443 5566666777776653
Q ss_pred HHHhhchhhHhHH
Q 039020 102 CYRNLFPGERKFS 114 (481)
Q Consensus 102 ~~~~l~~~E~~L~ 114 (481)
.+-.-|+.++
T Consensus 176 ---~~~~KEkEim 185 (187)
T COG0233 176 ---LLKDKEKEIM 185 (187)
T ss_pred ---HHHHHHHHHh
Confidence 2334455543
No 23
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=24.71 E-value=5.6e+02 Score=23.70 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=55.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhHHHHHHHHHhcCC-CCCChhHhhhcChHhHHHHHHhHHHHHH
Q 039020 22 EGFPNFSTEAISNMNKIATAMISCGYEAECCMAYTCFRRNAFREVLNKLGF-DSITIDDAHRMQWESLEREIGSWISIFK 100 (481)
Q Consensus 22 ~~~~~~~~~~~~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~~L~~L~~-~~~~~~~v~~~~~e~~~~~I~~wi~a~~ 100 (481)
.+||.++.+.-.+|-..++.+. .++-..-..+|+.+++. ++.+.. ..++.+++.+.. +.++.....|+..+.
T Consensus 100 i~iP~lT~E~R~elvK~~k~~~-----E~aKv~iRniRr~~~~~-iKk~~k~~~iseD~~k~~e-~eiQkltd~~i~~id 172 (185)
T PRK00083 100 LPIPPLTEERRKELVKQVKKEA-----EEAKVAIRNIRRDANDK-LKKLEKDKEISEDELKRAE-DEIQKLTDKYIKKID 172 (185)
T ss_pred ecCCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHhhcCCCChHHHHHHH-HHHHHHHHHHHHHHH
Confidence 6889999999999999988885 44555667888888765 555543 235555555443 467777888888777
Q ss_pred HHHHhhchhhHhHH
Q 039020 101 HCYRNLFPGERKFS 114 (481)
Q Consensus 101 ~~~~~l~~~E~~L~ 114 (481)
-+ +-.-|+.|+
T Consensus 173 ~~---~~~Kekeim 183 (185)
T PRK00083 173 EL---LAAKEKEIM 183 (185)
T ss_pred HH---HHHHHHHHh
Confidence 43 234455443
No 24
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.88 E-value=8.8e+02 Score=27.47 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCCccccHHHHHHHHHHHHhcHHHHHHHHhh
Q 039020 198 AEAAASIFCELENSIKSDQGRTPVPSGQVHPSTRYTMNYLKYACEYRDTLEEVFRF 253 (481)
Q Consensus 198 ~~~~~~~f~ef~~~I~~~~~~~~~~dg~Vh~lT~~vm~yl~~L~~y~~~l~~il~~ 253 (481)
...+...+..+....-++-++...| ..-.++|-...+++..+.++.+.+.++|..
T Consensus 925 ~ssccsslD~i~tYlfk~itr~~~p-~~~~~~tpa~~r~l~~i~q~Pdil~qml~t 979 (1082)
T KOG1410|consen 925 SSSCCSSLDTIVTYLFKRITRSTKP-TRKVGMTPAGDRFLHAIQQHPDILQQMLST 979 (1082)
T ss_pred HhHHHHHHHHHHHHHHHHHhccCCC-cCcCCCChhHHHHHHHHHhChHHHHHHHHH
Confidence 3345555555555544433333333 344578888889999999999988887763
No 25
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=20.69 E-value=4.9e+02 Score=21.48 Aligned_cols=80 Identities=13% Similarity=0.117 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhccchHHHHHHhhHHHHHHhhHhhhhhhcchhhhHHHHHHHHHHHHHHHH--HHHHHHH
Q 039020 129 FSELAAAVITPFLSFSEVIALTKRSAERLFKFLDMCETLNDLLTTIDDSYSKEISQDLTSEIAVVKSQLAE--AAASIFC 206 (481)
Q Consensus 129 f~~i~~~~i~~ll~f~~~ia~~~r~peklf~lLdm~e~L~~~~p~~~~lf~~~~~~~~~~~~~~~~~~L~~--~~~~~f~ 206 (481)
|....+.++..|.+=-.+.+.-.|+...--.+...|..|..+-|.+-..... ..+-+..+..+.++|.. -|+..|.
T Consensus 3 f~~~l~~~v~if~nRmksns~RGrsIanDsaVqsLF~~lt~mH~~LL~~i~~--~ee~R~~~E~lQdkL~qi~eAR~AlD 80 (96)
T PF12210_consen 3 FCNTLRSSVEIFVNRMKSNSSRGRSIANDSAVQSLFQTLTAMHPQLLKYIQE--QEEKRVYYEGLQDKLAQIKEARAALD 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--GGG-HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544444444444466656667777888888887766543332 23455666666666654 3566666
Q ss_pred HHHH
Q 039020 207 ELEN 210 (481)
Q Consensus 207 ef~~ 210 (481)
.+..
T Consensus 81 alR~ 84 (96)
T PF12210_consen 81 ALRE 84 (96)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 26
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.47 E-value=1e+02 Score=32.41 Aligned_cols=75 Identities=16% Similarity=0.275 Sum_probs=42.2
Q ss_pred CCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhHHHHHHHHHhcCCC-------CCChhHhhhc
Q 039020 13 PDSTESNED--EGFPNFSTEAISNMNKIATAMISCGYEAECCMAYTCFRRNAFREVLNKLGFD-------SITIDDAHRM 83 (481)
Q Consensus 13 ~~~~~~~~~--~~~~~~~~~~~~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~~L~~L~~~-------~~~~~~v~~~ 83 (481)
.-+||-+.| -.|++|-|++ .-|+-+.+.+-.-|...--+++ --|..|+..++-.|+. +.+++.++++
T Consensus 173 REFYQcDFDIAG~~d~M~pda-E~lkiv~e~L~~l~Igd~~iKv---NhRkiLdgmf~v~GVp~~~frtICSsIDKLdK~ 248 (518)
T KOG1936|consen 173 REFYQCDFDIAGQFDPMIPDA-ECLKIVVEILSRLGIGDYGIKV---NHRKILDGMFAVCGVPEDKFRTICSSIDKLDKM 248 (518)
T ss_pred hhhhccCccccccCCCCCchH-HHHHHHHHHHhhcCccceEEEe---cHHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcC
Confidence 345554444 2366555443 2333333333333443221111 2467899999999985 2367889999
Q ss_pred ChHhHHHH
Q 039020 84 QWESLERE 91 (481)
Q Consensus 84 ~~e~~~~~ 91 (481)
|||....+
T Consensus 249 pwedVkkE 256 (518)
T KOG1936|consen 249 PWEDVKKE 256 (518)
T ss_pred CHHHHHHH
Confidence 99876554
No 27
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=20.14 E-value=6.9e+02 Score=25.14 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=59.9
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhhHHHHHHhhcccCcC-CCc---cccHHHHHHHHHHHHHHHHHH---HHhcc--cccc
Q 039020 343 MGVTWCRKRSTQLRQYHKNYQRETWSRVLQCISHEGLQ-ANG---KVVKAVLKERFKNFNALFEEI---HRTQS--TWVV 413 (481)
Q Consensus 343 Lg~~w~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~-~~~---~~~r~~iKekf~~FN~~Fee~---~~~q~--~w~V 413 (481)
.+++++..+..-+..|.+-|+ +.+.+++-|.+-... ..| ++....+|.-+..|-..+... +-.++ .|.+
T Consensus 117 Ik~dYldvYa~lvk~YTd~yQ--~fn~~lSkls~~IsaG~DGn~VkFd~~~lk~~l~~~~~Ky~~~~~~~pa~~~~~i~~ 194 (308)
T TIGR02553 117 IGDSYLGVYENVVEGYTDFYQ--AFSDILSKMQDWISPGKDGNNVKLDVGKLKALLQQLIDHLPNQINSFPAQSDGGMQL 194 (308)
T ss_pred HHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhcccCCCCCeeeeCHHHHHHHHHHHHHHhccCccCCcccccccccc
Confidence 445677777888888988775 678888888432110 011 245566666666655554431 11122 3333
Q ss_pred CC-HHHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCCCcccccCHHHHHHHHHHhh
Q 039020 414 SD-EQLQSELRVSISAVVTPAYRSFVGRFKQYLEGRSMDKYIKYQPEDIETLIDELF 469 (481)
Q Consensus 414 pD-~~LR~~Lr~~i~~~v~PaY~~F~~ky~~~~~~k~~~KyiKytpe~le~~l~~LF 469 (481)
+- .+.. ..++++.-.+-|+ . ...+..|+.++..|+.|+.+|=
T Consensus 195 ~s~~Ea~-~W~keLg~~v~~~-----~--------~~~~G~I~~dl~~i~~m~~sl~ 237 (308)
T TIGR02553 195 PKEADAR-RWRKELGLPVSCL-----Q--------ISDSGVVTVDPTPLIKMRDDLP 237 (308)
T ss_pred CcHHHHH-HHHHHhCCCCccc-----c--------ccCCCeEEeChHHHHHHHHhcC
Confidence 32 2222 3333331111111 0 1112388999999999999983
Done!