Query 039020
Match_columns 481
No_of_seqs 158 out of 484
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 08:52:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 100.0 4.8E-89 1.6E-93 736.7 37.0 426 23-473 105-571 (571)
2 2b1e_A Exocyst complex compone 100.0 2.3E-83 7.9E-88 689.6 36.7 438 9-469 98-563 (564)
3 2d2s_A Exocyst complex compone 73.2 36 0.0012 31.5 11.9 99 32-149 91-189 (235)
4 2x5h_A ORF 131; viral protein; 53.7 3.9 0.00014 31.2 0.9 21 433-458 76-96 (97)
5 3nft_A Translocator protein BI 32.3 49 0.0017 31.4 4.8 42 429-471 142-190 (303)
6 2wvq_A Small S protein; prion- 31.3 95 0.0033 28.4 6.7 119 343-468 38-167 (225)
7 4gfq_A Ribosome-recycling fact 27.8 2.4E+02 0.0081 25.5 8.5 83 22-114 124-207 (209)
8 1wqg_A Ribosome recycling fact 25.9 3.4E+02 0.012 23.9 9.5 83 22-114 100-183 (185)
9 3txn_A 26S proteasome regulato 25.0 1.1E+02 0.0036 30.7 6.2 81 389-470 258-342 (394)
10 1ise_A Ribosome recycling fact 24.3 3.5E+02 0.012 23.8 8.9 83 22-114 100-183 (185)
11 1is1_A Ribosome recycling fact 23.3 3.8E+02 0.013 23.6 9.4 83 22-114 100-183 (185)
12 1dd5_A Ribosome recycling fact 22.8 3.8E+02 0.013 23.6 8.7 83 22-114 100-183 (185)
13 2jr2_A UPF0352 protein CPS_261 22.6 43 0.0015 25.1 2.0 16 455-470 6-21 (76)
14 4e9f_A Methyl-CPG-binding doma 22.2 52 0.0018 28.5 2.9 34 429-468 48-81 (161)
15 2pco_A Latarcin-1, LTC-1; cont 21.8 49 0.0017 19.4 1.7 16 390-405 7-22 (26)
16 2oku_A Acyl-COA dehydrogenase 21.7 1E+02 0.0035 25.7 4.4 77 387-465 31-110 (131)
17 2juz_A UPF0352 protein HI0840; 21.3 47 0.0016 25.1 2.0 16 455-470 6-21 (80)
18 2juw_A UPF0352 protein SO_2176 20.9 48 0.0016 25.1 2.0 16 455-470 6-21 (80)
19 2jrx_A UPF0352 protein YEJL; h 20.5 49 0.0017 25.2 2.0 16 455-470 6-21 (83)
20 2jpq_A UPF0352 protein VP2129; 20.4 50 0.0017 25.1 2.0 16 455-470 6-21 (83)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=100.00 E-value=4.8e-89 Score=736.71 Aligned_cols=426 Identities=20% Similarity=0.352 Sum_probs=367.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhHHHHHHHHHhc------------------------CCCCCChh
Q 039020 23 GFPNFSTEAISNMNKIATAMISCGYEAECCMAYTCFRRNAFREVLNKL------------------------GFDSITID 78 (481)
Q Consensus 23 ~~~~~~~~~~~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~~L~~L------------------------~~~~~~~~ 78 (481)
.++.+|++++.+|+.||++|+.+||.++|+++|+++|+.+++++|..| |.++.++.
T Consensus 105 ~~~~~~~~~~~~L~~Ia~~m~~~g~~~~~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 184 (571)
T 2pft_A 105 VLEHLPESVLRDVVRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPI 184 (571)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred cccCCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccc
Confidence 345899999999999999999999999999999999999999999999 33344444
Q ss_pred HhhhcChHhHHHHHHhHHHHHHHHHHhhchhhHhHHhhhcCCCCcchHHHHHHHHHHHHHHHHhhHHHHH-hhccch--H
Q 039020 79 DAHRMQWESLEREIGSWISIFKHCYRNLFPGERKFSDAIFSEYPSTSQRLFSELAAAVITPFLSFSEVIA-LTKRSA--E 155 (481)
Q Consensus 79 ~v~~~~~e~~~~~I~~wi~a~~~~~~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~i~~ll~f~~~ia-~~~r~p--e 155 (481)
++++ +|+.++.+|..|++++.++++ ||++||+||++||+. +.+..||.++|++++..|++|+++|+ ..+|+| +
T Consensus 185 ~~~~-~~e~~~~~i~~wi~~~~~~~~-l~~~Er~L~~~vf~~--~~~~~~F~~i~~~~~~~ll~f~e~v~~~~kr~~~~~ 260 (571)
T 2pft_A 185 KRPG-RDDMLDVETDAYIHCVSAFVK-LAQSEYRLLMEIIPE--HHQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRH 260 (571)
T ss_dssp ---------CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccc-chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccch
Confidence 4543 799999999999999998886 899999999999986 56789999999999999999999997 688888 6
Q ss_pred HHHHHhhHHHH---HHhhHhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCCC-CCCccccH
Q 039020 156 RLFKFLDMCET---LNDLLTTIDDSYSKEISQDLTSEIAVVKSQLAEAAASIFCELENSIKSDQ-GRTPVP-SGQVHPST 230 (481)
Q Consensus 156 klf~lLdm~e~---L~~~~p~~~~lf~~~~~~~~~~~~~~~~~~L~~~~~~~f~ef~~~I~~~~-~~~~~~-dg~Vh~lT 230 (481)
++|.+++||+. |.++.|+|+.+|++..+ .++.++.+++++|+++++++|.||.+.|++++ ++.++| ||+|||+|
T Consensus 261 ~~~~~l~l~~~l~~l~~l~p~~~~~f~g~~~-~~~~~~~~~l~~L~~~~~~~f~ef~~~i~~~~~s~~~vp~dg~Vh~lT 339 (571)
T 2pft_A 261 DFSTVLTVFPILRHLKQTKPEFDQVLQGTAA-STKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELT 339 (571)
T ss_dssp CCSTTTTHHHHHHHHHHHHHHHHHHTTTSCH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSGGGSCTTCCCCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCccchHH
Confidence 66666655555 99999999999998765 57899999999999999999999999999986 677777 99999999
Q ss_pred HHHHHHHHHHHhcHHHHHHHHhhccCCCCCCCCCCCCccccccccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 039020 231 RYTMNYLKYACEYRDTLEEVFRFHHKNEGFDDAPNQENHDINEHLTEMPNDDGTPKKSPFAIELIAVMDLLDANLEMKSR 310 (481)
Q Consensus 231 ~~vm~yl~~L~~y~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk 310 (481)
+||||||+.|++|+++|..+|...++.|... +. ++..+.++|+.++.++|++|+.|||.||+
T Consensus 340 ~~vmnyl~~L~~y~~~l~~il~~~~~~~~~~--------~~----------~~~~~~~~l~~~i~~ii~~L~~~Le~ksk 401 (571)
T 2pft_A 340 SNAILFLQQLLDFQETAGAMLASQETSSSAT--------SY----------SSEFSKRLLSTYICKVLGNLQLNLLSKSK 401 (571)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTTC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCCcccc--------cC----------CCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998764332100 00 01123568999999999999999999999
Q ss_pred cCCCchhhHHHHhhhHHHHHHhhhCchhhhhhhc---hhHHHHHHHHHHHHHHHHHHhhHHHHHHhhcccCcCC---Cc-
Q 039020 311 LYRDPALRYVFLMNNGRYILQKIKGSNEIHNMMG---VTWCRKRSTQLRQYHKNYQRETWSRVLQCISHEGLQA---NG- 383 (481)
Q Consensus 311 ~y~d~~L~~iFLmNN~~yI~~~~~~s~~l~~lLg---~~w~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~~---~~- 383 (481)
.|+|++|++||||||+|||++++++| +|..+|| ++|++++..++++|++.| +++|++|+++|.+++.+. ++
T Consensus 402 ~y~d~~l~~iFLmNN~~yI~~~v~~s-~l~~llg~~~~~~~~~~~~~i~~~~~~Y-~~sW~~v~~~L~~~~~~~~~~g~~ 479 (571)
T 2pft_A 402 VYEDPALSAIFLHNNYNYILKSLEKS-ELIQLVAVTQKTAERSYREHIEQQIQTY-QRSWLKVTDYIAEKNLPVFQPGVK 479 (571)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTTTTTS-THHHHHHTTCTTHHHHHHHHHHHHHHHH-HGGGHHHHTTTSGGGSCSSCCCSC
T ss_pred hCCchHHHHHHHHhhHHHHHHHHhcc-chHHHhCcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCcCCCCCC
Confidence 99999999999999999999999987 8999999 689999999999999999 899999999999876432 22
Q ss_pred --cccHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCCCcccccCHHHH
Q 039020 384 --KVVKAVLKERFKNFNALFEEIHRTQSTWVVSDEQLQSELRVSISAVVTPAYRSFVGRFKQYLEGRSMDKYIKYQPEDI 461 (481)
Q Consensus 384 --~~~r~~iKekf~~FN~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~PaY~~F~~ky~~~~~~k~~~KyiKytpe~l 461 (481)
..+|+.+||||++||.+|||+|++|+.|+||||+||++||.+|.++|+|+|++||+||++..|+||++||||||||+|
T Consensus 480 ls~~~r~~iKe~fk~Fn~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~~KyiKytpe~l 559 (571)
T 2pft_A 480 LRDKERQMIKERFKGFNDGLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQV 559 (571)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHH
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHhCCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCCCCccccCHHHH
Confidence 247899999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHhhCCCC
Q 039020 462 ETLIDELFDGNP 473 (481)
Q Consensus 462 e~~l~~LF~g~~ 473 (481)
|++|++||+|+.
T Consensus 560 e~~L~~LFeg~a 571 (571)
T 2pft_A 560 GDMIDRLFDTSA 571 (571)
T ss_dssp HHHHHTSSSCC-
T ss_pred HHHHHHHhCCCC
Confidence 999999999963
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=100.00 E-value=2.3e-83 Score=689.56 Aligned_cols=438 Identities=17% Similarity=0.267 Sum_probs=360.6
Q ss_pred CcccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhHHHHHHHHHhcCCCCCChhHhhhcChHhH
Q 039020 9 RCLLPDSTESNEDEGFPNFSTEAISNMNKIATAMISCGYEAECCMAYTCFRRNAFREVLNKLGFDSITIDDAHRMQWESL 88 (481)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~~L~~L~~~~~~~~~v~~~~~e~~ 88 (481)
+.++|..+. +++.+||.+|++++++|+.||++|+.+|+.++|+++|+++|+.+++++|+.|+....++...++++|+++
T Consensus 98 ~p~~p~~~i-~k~~p~p~l~~~~l~~L~~Ia~~m~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~ 176 (564)
T 2b1e_A 98 KPFDPQINI-TKKMPFPYYEDQQLGALSWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKG 176 (564)
T ss_dssp CCCCHHHHH-HHTCCCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTCC------------C
T ss_pred CCCCHHHhh-ccCCCCCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhh
Confidence 446666664 7889999999999999999999999999999999999999999999999998765555666778999999
Q ss_pred HHHHHhHHHHHHHHHHhhchhhHhHHhhhcCCCCcchHHHHHHHHHHHHHHHHhhHHHH-Hhhccch-HHHHHHhhHHHH
Q 039020 89 EREIGSWISIFKHCYRNLFPGERKFSDAIFSEYPSTSQRLFSELAAAVITPFLSFSEVI-ALTKRSA-ERLFKFLDMCET 166 (481)
Q Consensus 89 ~~~I~~wi~a~~~~~~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~i~~ll~f~~~i-a~~~r~p-eklf~lLdm~e~ 166 (481)
+++|..|++|+. .|+++|++||++||+.+++.+..||..+|++++..+....+.+ +.++++| +++|.+|+||++
T Consensus 177 ~~~i~~~~~a~~----~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~l~~~~~~l~~~~~~~k~~~~~~~f~~l~~~~~ 252 (564)
T 2b1e_A 177 SSGMNSYTEALL----GFIANEKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVES 252 (564)
T ss_dssp CSTHHHHHHHHH----HHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCTHHHHHHHH
T ss_pred ccHHHHHHHHHH----HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcchhHHHHHHH
Confidence 999999999986 8999999999999998778899999999999998544444432 2466888 899999999999
Q ss_pred HHhhHhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCC-CCCCccccHHHHHHHHHHHHhcH
Q 039020 167 LNDLLTTIDDSYSKEISQDLTSEIAVVKSQLAEAAASIFCELENSIKSDQGR-TPV-PSGQVHPSTRYTMNYLKYACEYR 244 (481)
Q Consensus 167 L~~~~p~~~~lf~~~~~~~~~~~~~~~~~~L~~~~~~~f~ef~~~I~~~~~~-~~~-~dg~Vh~lT~~vm~yl~~L~~y~ 244 (481)
|.++. .+|.+..+.. ..++.+++++|+++++++|.||.+.|+.+.++ .++ +||||||+|+||||||+.|++|+
T Consensus 253 l~~~~----~~~~~~~~~~-~~~~~~~l~~L~~~~~~~~~ef~~~i~~~~~~~~~~p~dG~Vh~lT~~vmnyl~~l~~y~ 327 (564)
T 2b1e_A 253 INDVK----KSLRGKELQN-YNLLQDCTQEVRQVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFSEYK 327 (564)
T ss_dssp HHHHH----HHTTTCCCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCTTCCCCHHHHHHHHHHHHHGGGH
T ss_pred HHHHH----HHHcccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccHHHHHHHHHHHHHHhhH
Confidence 98655 6666544333 38899999999999999999999999987654 344 59999999999999999999999
Q ss_pred HHHHHHHhhc-cCCCCCCCCCCCCccccccccccCCCC--CCCCCCCchHHHHHHHHHHHHHHHHHH-------------
Q 039020 245 DTLEEVFRFH-HKNEGFDDAPNQENHDINEHLTEMPND--DGTPKKSPFAIELIAVMDLLDANLEMK------------- 308 (481)
Q Consensus 245 ~~l~~il~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~i~~ii~~L~~~Le~k------------- 308 (481)
++|..+|... .++|.....+. . .+ ..+.+ .+.++.++|+.++.++|++|+.|||+|
T Consensus 328 ~~l~~~l~~~~~~~~~~~~~~~----~---~~-~~~~~~~~~~~~~~~l~~~i~~~i~~L~~~Le~ka~~~~~~~~~~~l 399 (564)
T 2b1e_A 328 NGCLGAMDNITRENWLPSNYKE----K---EY-TLQNEALNWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDV 399 (564)
T ss_dssp HHHHHHTTTCCGGGTSCTTCCG----G---GS-CCCC----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCC
T ss_pred HHHHHHHHhccccCCCcccccc----c---cc-ccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 9999999864 34454311110 0 01 11110 123446689999999999999999999
Q ss_pred -----hccCCCchhhHHHHhhhHHHHHHhhhCchhhhhhhchhHHHHHHHHHHHHHHHHHHhhHHHHHHhhcccCcC-CC
Q 039020 309 -----SRLYRDPALRYVFLMNNGRYILQKIKGSNEIHNMMGVTWCRKRSTQLRQYHKNYQRETWSRVLQCISHEGLQ-AN 382 (481)
Q Consensus 309 -----sk~y~d~~L~~iFLmNN~~yI~~~~~~s~~l~~lLg~~w~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~-~~ 382 (481)
|+.|+|++++ +|||||.|||++++++| +|..+||++|.+++.+++++| +.|++++|++|++||.+++.. .+
T Consensus 400 ~~~~ss~~~~d~~l~-~FllNN~~yI~~~v~~S-eL~~lLg~~~~~~~~~~~~~~-~~y~~~sW~~v~~~L~~~~~~~~~ 476 (564)
T 2b1e_A 400 ANPNSSKNKHKQRIG-FFILMNLTLVEQIVEKS-ELNLMLAGEGHSRLERLKKRY-ISYMVSDWRDLTANLMDSVFIDSS 476 (564)
T ss_dssp SCTTCSSCTTHHHHH-HHHHHHHHHHHHHHHTS-THHHHTTTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccchhhhhcCHHHHH-HHHHHhHHHHHHHHhhh-hhHhHhcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccCCCC
Confidence 4679999885 59999999999999987 899999999999999999999 589999999999999886532 11
Q ss_pred --ccccHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCCCcccccCHHH
Q 039020 383 --GKVVKAVLKERFKNFNALFEEIHRTQSTWVVSDEQLQSELRVSISAVVTPAYRSFVGRFKQYLEGRSMDKYIKYQPED 460 (481)
Q Consensus 383 --~~~~r~~iKekf~~FN~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~PaY~~F~~ky~~~~~~k~~~KyiKytpe~ 460 (481)
+..+|+.+||||++||++|||+|++|+.|+||||+||++||.+|.++|+|+|++||+||+. ++||++|||||||++
T Consensus 477 ~ks~~~k~~iKe~fk~FN~~Fee~~~~q~~w~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~--~~k~~~KyiKytpe~ 554 (564)
T 2b1e_A 477 GKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKD--SFKNPRKHIKYTPDE 554 (564)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG--GSSSGGGTCSCCHHH
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHhcCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCCCcccCCHHH
Confidence 2358999999999999999999999999999999999999999999999999999999998 789999999999999
Q ss_pred HHHHHHHhh
Q 039020 461 IETLIDELF 469 (481)
Q Consensus 461 le~~l~~LF 469 (481)
||++|++|+
T Consensus 555 le~~l~~L~ 563 (564)
T 2b1e_A 555 LTTVLNQLV 563 (564)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999996
No 3
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=73.25 E-value=36 Score=31.46 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHhHHHHHHHHHhcCCCCCChhHhhhcChHhHHHHHHhHHHHHHHHHHhhchhhH
Q 039020 32 ISNMNKIATAMISCGYEAECCMAYTCFRRNAFREVLNKLGFDSITIDDAHRMQWESLEREIGSWISIFKHCYRNLFPGER 111 (481)
Q Consensus 32 ~~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~~L~~L~~~~~~~~~v~~~~~e~~~~~I~~wi~a~~~~~~~l~~~E~ 111 (481)
...++..+..|++-|...+.+..|-+.|+..+...+..++.+ +.+..|+..+-.++=..+..=-
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~----------------gd~~~Yi~~Ls~i~Fs~I~~t~ 154 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSV----------------DNPTNYLTQLAVIRFQTIKKTV 154 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--C----------------CSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhccc----------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999999999999999777433 1223455444332212222111
Q ss_pred hHHhhhcCCCCcchHHHHHHHHHHHHHHHHhhHHHHHh
Q 039020 112 KFSDAIFSEYPSTSQRLFSELAAAVITPFLSFSEVIAL 149 (481)
Q Consensus 112 ~L~~~vf~~~~~~~~~~f~~i~~~~i~~ll~f~~~ia~ 149 (481)
.--..+|+.. ...+++.++.=+...+-.|+..+..
T Consensus 155 ~~f~~~F~~~---~~~~~S~lV~Wa~~eve~f~~l~~r 189 (235)
T 2d2s_A 155 EDFQDIFKEL---GAKISSILVDWCSDEVDNHFKLIDK 189 (235)
T ss_dssp HHHHHHSTTC---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC---CcccccHHHHHHHHHHHHHHHHHHH
Confidence 2234578742 2357777777777777778877763
No 4
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=53.75 E-value=3.9 Score=31.21 Aligned_cols=21 Identities=24% Similarity=0.853 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhcccCCCCCcccccCH
Q 039020 433 AYRSFVGRFKQYLEGRSMDKYIKYQP 458 (481)
Q Consensus 433 aY~~F~~ky~~~~~~k~~~KyiKytp 458 (481)
+-.+|++||.+.. +|||||||
T Consensus 76 lIa~FLeKYS~~L-----nkYVkF~~ 96 (97)
T 2x5h_A 76 LIAEFLEKYSDFL-----NEYVKFTP 96 (97)
T ss_dssp HHHHHHHHTHHHH-----HHHC----
T ss_pred HHHHHHHHHHHHH-----HHhhcccc
Confidence 3467888887655 38999886
No 5
>3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A
Probab=32.34 E-value=49 Score=31.44 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=30.4
Q ss_pred HhHHHHHHHHHHhhhcc-------cCCCCCcccccCHHHHHHHHHHhhCC
Q 039020 429 VVTPAYRSFVGRFKQYL-------EGRSMDKYIKYQPEDIETLIDELFDG 471 (481)
Q Consensus 429 ~v~PaY~~F~~ky~~~~-------~~k~~~KyiKytpe~le~~l~~LF~g 471 (481)
.|+-.|..||..|.... .+ +-.|.||+++..+.+-|+++.+.
T Consensus 142 ~IVk~YTdyyQdfNe~LSKlSd~IsA-kDGN~IKFD~~sfk~~l~~l~~k 190 (303)
T 3nft_A 142 TIVEGLTKYFQSVADVMSKLQDYISA-KDDKNMKIDGGKIKALIQQVIDH 190 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGEEE-ETTTEEEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-cCCCeeeecHHHHHHHHHHHHHh
Confidence 36777777777776543 23 44577999999999999988664
No 6
>2wvq_A Small S protein; prion-binding protein, prion, prion regulatory domain, heter incompatibility, prion- binding protein; 2.00A {Podospora anserina} PDB: 2wvn_A 2wvo_A
Probab=31.30 E-value=95 Score=28.37 Aligned_cols=119 Identities=13% Similarity=0.273 Sum_probs=62.9
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhhHHHHHHhhcccCcCCC-c-cccHHHHHHHHHHHHHHHHHHHHhcccccc--CCHHH
Q 039020 343 MGVTWCRKRSTQLRQYHKNYQRETWSRVLQCISHEGLQAN-G-KVVKAVLKERFKNFNALFEEIHRTQSTWVV--SDEQL 418 (481)
Q Consensus 343 Lg~~w~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~~~-~-~~~r~~iKekf~~FN~~Fee~~~~q~~w~V--pD~~L 418 (481)
+|.++ +....+++=..... ..|+..+....+...... . ....+.+++-+..--..|+++-+.++.|.. ||+++
T Consensus 38 f~~D~-~~l~lkLdve~~RL--~~WG~avGL~~~~~~~~~l~~~~~~~~v~~iL~~I~~lf~~~~~l~~Ry~~~~~~~~~ 114 (225)
T 2wvq_A 38 FGRDY-ERCQLRLDIAKARL--SRWGEAVKINDDPRFHSDAPTDKSVQLAKSIVEEILLLFESAQKTSKRYELVADQQDL 114 (225)
T ss_dssp GGGGH-HHHHHHHHHHHHHH--HHHHHHTTTTTCGGGGCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGG
T ss_pred hhHHH-HHHHHHHHHHHHHH--HHHHHHhCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc
Confidence 44444 33333444333333 469999987754422211 1 123456777777777777777666666664 33322
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhc-------ccCCCCCcccccCHHHHHHHHHHh
Q 039020 419 QSELRVSISAVVTPAYRSFVGRFKQY-------LEGRSMDKYIKYQPEDIETLIDEL 468 (481)
Q Consensus 419 R~~Lr~~i~~~v~PaY~~F~~ky~~~-------~~~k~~~KyiKytpe~le~~l~~L 468 (481)
-. + . .+-+-|+++..+++.+.. ......-+++-|+.+.++.+|.++
T Consensus 115 ~~-~--~-~~~l~~~~~~~~~~~r~~~~~rq~~~s~~~r~~Wai~Dk~~F~~LV~~i 167 (225)
T 2wvq_A 115 VV-F--E-DKDMKPIGRALHRRLNDLVSRRQKQTSLAKKTAWALYDGKSLEKIVDQV 167 (225)
T ss_dssp CB-C--C-GGGSCHHHHHHHHHHHHHHHHHSCCCCSCCCCCEEECSHHHHHHHHHHH
T ss_pred cc-c--C-hhhHHHHHHHHHHHHHHHHHhccccCCccceeeeeeechHHHHHHHHHH
Confidence 11 0 0 122334444444433222 112334578889999999998775
No 7
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=27.80 E-value=2.4e+02 Score=25.50 Aligned_cols=83 Identities=23% Similarity=0.313 Sum_probs=54.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhHHHHHHHHHhcCC-CCCChhHhhhcChHhHHHHHHhHHHHHH
Q 039020 22 EGFPNFSTEAISNMNKIATAMISCGYEAECCMAYTCFRRNAFREVLNKLGF-DSITIDDAHRMQWESLEREIGSWISIFK 100 (481)
Q Consensus 22 ~~~~~~~~~~~~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~~L~~L~~-~~~~~~~v~~~~~e~~~~~I~~wi~a~~ 100 (481)
.++|.++.+.-.+|-..|+.+. .+|--+-.++|+.+.+. |+.+.. ..++.+++.+.+ +.++.....|+..+.
T Consensus 124 i~iP~LTeErRkelvK~ak~~~-----E~aKvaIRniRrda~~~-lKk~~K~~~isEDe~k~~e-~eiQklTd~~i~~iD 196 (209)
T 4gfq_A 124 IAFPALTEERRRDLVKVVKKYA-----EEAKVAVRNVRRDGNDD-LKKLEKAGEITEDDLRGYT-EDIQKETDKYIAKVD 196 (209)
T ss_dssp EECCBCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHTSSCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred eeCCCccHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHhcccCCCCHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 6789999999999999999885 56666667889888764 333332 235555555443 456667777887666
Q ss_pred HHHHhhchhhHhHH
Q 039020 101 HCYRNLFPGERKFS 114 (481)
Q Consensus 101 ~~~~~l~~~E~~L~ 114 (481)
- .+-.-|..++
T Consensus 197 ~---~l~~KEkEim 207 (209)
T 4gfq_A 197 E---IAKNKEKEIM 207 (209)
T ss_dssp H---HHHHHHHHHH
T ss_pred H---HHHHHHHHhc
Confidence 3 2334455543
No 8
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=25.90 E-value=3.4e+02 Score=23.89 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=55.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhHHHHHHHHHhcCCC-CCChhHhhhcChHhHHHHHHhHHHHHH
Q 039020 22 EGFPNFSTEAISNMNKIATAMISCGYEAECCMAYTCFRRNAFREVLNKLGFD-SITIDDAHRMQWESLEREIGSWISIFK 100 (481)
Q Consensus 22 ~~~~~~~~~~~~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~~L~~L~~~-~~~~~~v~~~~~e~~~~~I~~wi~a~~ 100 (481)
.++|.++.+.-.+|-..++.+. .++--+-.++|+.+.+. |+.+..+ .++.+++.+.+ +.++.....|+..+.
T Consensus 100 i~iP~lTeErRkelvK~~k~~~-----E~aKvaiRniRrda~~~-lKk~~K~~~iseD~~k~~e-~~iQkltd~~i~~id 172 (185)
T 1wqg_A 100 VAVPQLTEERRRELVKQAKHKG-----EEAKVSVRNIRRKAMEE-LHRIRKEGEAGEDEVGRAE-KDLDKTTHQYVTQID 172 (185)
T ss_dssp EECCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHTTSSCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHhhhcCCCChhHHHHHH-HHHHHHHHHHHHHHH
Confidence 6789999999999999999874 56666777888887654 4444322 35656655443 456777788887666
Q ss_pred HHHHhhchhhHhHH
Q 039020 101 HCYRNLFPGERKFS 114 (481)
Q Consensus 101 ~~~~~l~~~E~~L~ 114 (481)
- .+-.-|..++
T Consensus 173 ~---~~~~KEkEim 183 (185)
T 1wqg_A 173 E---LVKHKEGELL 183 (185)
T ss_dssp H---HHHHHHHHHH
T ss_pred H---HHHHHHHHHh
Confidence 3 2334555554
No 9
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=25.00 E-value=1.1e+02 Score=30.67 Aligned_cols=81 Identities=9% Similarity=0.120 Sum_probs=56.2
Q ss_pred HHHHHHHHHHH----HHHHHHHhccccccCCHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCCCcccccCHHHHHHH
Q 039020 389 VLKERFKNFNA----LFEEIHRTQSTWVVSDEQLQSELRVSISAVVTPAYRSFVGRFKQYLEGRSMDKYIKYQPEDIETL 464 (481)
Q Consensus 389 ~iKekf~~FN~----~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~PaY~~F~~ky~~~~~~k~~~KyiKytpe~le~~ 464 (481)
.+++.+..|+. .|+++...++.--..||-|+..+..-..+.+.-++..+..-|..+.+. ...+-+..+++++|..
T Consensus 258 ~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~-~iA~~l~ls~~evE~~ 336 (394)
T 3txn_A 258 AMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVA-HVAESIQLPMPQVEKK 336 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHH-HHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHH-HHHHHHCcCHHHHHHH
Confidence 35556666653 577887777665667999887666666666667777777777766542 2235567799999999
Q ss_pred HHHhhC
Q 039020 465 IDELFD 470 (481)
Q Consensus 465 l~~LF~ 470 (481)
|.++-.
T Consensus 337 L~~lI~ 342 (394)
T 3txn_A 337 LSQMIL 342 (394)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 10
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=24.34 E-value=3.5e+02 Score=23.81 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=55.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhHHHHHHHHHhcCCC-CCChhHhhhcChHhHHHHHHhHHHHHH
Q 039020 22 EGFPNFSTEAISNMNKIATAMISCGYEAECCMAYTCFRRNAFREVLNKLGFD-SITIDDAHRMQWESLEREIGSWISIFK 100 (481)
Q Consensus 22 ~~~~~~~~~~~~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~~L~~L~~~-~~~~~~v~~~~~e~~~~~I~~wi~a~~ 100 (481)
.++|.++.+.-.+|-..++.+. .++--+-.++|+.+.+. |+.+..+ .++.+++.+.+ +.++.....|+..+.
T Consensus 100 i~iP~lTeErRkelvK~~k~~~-----E~aKvaiRniRrda~~~-lKk~~K~~~iseD~~k~~e-~~iQkltd~~i~~id 172 (185)
T 1ise_A 100 VPLPPLTEERRKDLTKIVRGEA-----EQARVAVRNVGRDANDK-VKALLKDKEISEDDDRRSQ-DDVQKLTDAAIKKIE 172 (185)
T ss_dssp EECCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHSSSCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHhhhcCCCChhHHHHHH-HHHHHHHHHHHHHHH
Confidence 6789999999999999999874 56666677888887654 3444322 35555555443 456677778887666
Q ss_pred HHHHhhchhhHhHH
Q 039020 101 HCYRNLFPGERKFS 114 (481)
Q Consensus 101 ~~~~~l~~~E~~L~ 114 (481)
- .+-.-|..++
T Consensus 173 ~---~~~~KEkEim 183 (185)
T 1ise_A 173 A---ALADKEAELM 183 (185)
T ss_dssp H---HHHHHHHHHH
T ss_pred H---HHHHHHHHHh
Confidence 3 2334555554
No 11
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=23.26 E-value=3.8e+02 Score=23.56 Aligned_cols=83 Identities=20% Similarity=0.248 Sum_probs=55.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhHHHHHHHHHhcCCC-CCChhHhhhcChHhHHHHHHhHHHHHH
Q 039020 22 EGFPNFSTEAISNMNKIATAMISCGYEAECCMAYTCFRRNAFREVLNKLGFD-SITIDDAHRMQWESLEREIGSWISIFK 100 (481)
Q Consensus 22 ~~~~~~~~~~~~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~~L~~L~~~-~~~~~~v~~~~~e~~~~~I~~wi~a~~ 100 (481)
.++|.++.+.-.+|-..++.+. .++--+-.++|+.+.+. |+.+..+ .++.+++.+.+ +.++.....|+.-+.
T Consensus 100 i~iP~lTeErRkelvK~~k~~~-----E~aKvaiRniRrda~~~-lKk~~K~~~iseD~~k~~e-~~iQkltd~~i~~id 172 (185)
T 1is1_A 100 VPLPPLTEERRKDLVKIVRGEA-----EGGRVAVRNIRRDANND-LKALLKDKEISEDEDRKAQ-EEIQKLTDVAVKKID 172 (185)
T ss_dssp EECCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHTTSSCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHhhhcCCCChhHHHHHH-HHHHHHHHHHHHHHH
Confidence 6789999999999999999874 56666677888887654 4444322 35656655443 456777778887666
Q ss_pred HHHHhhchhhHhHH
Q 039020 101 HCYRNLFPGERKFS 114 (481)
Q Consensus 101 ~~~~~l~~~E~~L~ 114 (481)
- .+-.-|..++
T Consensus 173 ~---~~~~KEkEim 183 (185)
T 1is1_A 173 E---VLAAKEKELM 183 (185)
T ss_dssp H---HHHHHHHHHH
T ss_pred H---HHHHHHHHHh
Confidence 3 2334455554
No 12
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=22.84 E-value=3.8e+02 Score=23.63 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=55.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhHHHHHHHHHhcCCC-CCChhHhhhcChHhHHHHHHhHHHHHH
Q 039020 22 EGFPNFSTEAISNMNKIATAMISCGYEAECCMAYTCFRRNAFREVLNKLGFD-SITIDDAHRMQWESLEREIGSWISIFK 100 (481)
Q Consensus 22 ~~~~~~~~~~~~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~~L~~L~~~-~~~~~~v~~~~~e~~~~~I~~wi~a~~ 100 (481)
.++|.++.+.-.+|-..++.+. .++--+-.++|+.+.+. |+.+..+ .++.+++.+.+ +.++.....|+..+.
T Consensus 100 i~iP~lTeErRkelvK~~k~~~-----E~aKvaiRniRrda~~~-lKk~~K~~~iseD~~k~~e-~~iQkltd~~i~~id 172 (185)
T 1dd5_A 100 LVFPSPTTEQREKWVKKAKEIV-----EEGKIAIRNIRREILKK-IKEDQKEGLIPEDDAKRLE-NEIQKLTDEFIEKLD 172 (185)
T ss_dssp EECCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHTSSCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHhhhcCCCChhHHHHHH-HHHHHHHHHHHHHHH
Confidence 6789999999999999999874 56666777888887654 3444322 35555555443 456677778887666
Q ss_pred HHHHhhchhhHhHH
Q 039020 101 HCYRNLFPGERKFS 114 (481)
Q Consensus 101 ~~~~~l~~~E~~L~ 114 (481)
- .+-.-|..++
T Consensus 173 ~---~~~~KEkEim 183 (185)
T 1dd5_A 173 E---VFEIKKEEIM 183 (185)
T ss_dssp H---HHHHHHHHHH
T ss_pred H---HHHHHHHHHh
Confidence 3 2334555554
No 13
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=22.62 E-value=43 Score=25.07 Aligned_cols=16 Identities=44% Similarity=0.864 Sum_probs=14.5
Q ss_pred ccCHHHHHHHHHHhhC
Q 039020 455 KYQPEDIETLIDELFD 470 (481)
Q Consensus 455 Kytpe~le~~l~~LF~ 470 (481)
||+-+++|.+|++++.
T Consensus 6 KYsd~qvE~ll~eli~ 21 (76)
T 2jr2_A 6 KYSNERVEKIIQDLLD 21 (76)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 7899999999999874
No 14
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=22.17 E-value=52 Score=28.53 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHHhhhcccCCCCCcccccCHHHHHHHHHHh
Q 039020 429 VVTPAYRSFVGRFKQYLEGRSMDKYIKYQPEDIETLIDEL 468 (481)
Q Consensus 429 ~v~PaY~~F~~ky~~~~~~k~~~KyiKytpe~le~~l~~L 468 (481)
.|.|+|.+|.++|. +++...+-++++|+.+|..+
T Consensus 48 ~v~~~~~~l~~~~p------t~~~la~a~~~el~~~i~~l 81 (161)
T 4e9f_A 48 MAIPVLWKFLEKYP------SAEVARTADWRDVSELLKPL 81 (161)
T ss_dssp HHHHHHHHHHHHSC------SHHHHTTSCHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHCC------CHHHHhccChHhHHhHhhhc
Confidence 58899999999985 35577788899999998876
No 15
>2pco_A Latarcin-1, LTC-1; continuous helix, toxin; NMR {Synthetic}
Probab=21.76 E-value=49 Score=19.42 Aligned_cols=16 Identities=6% Similarity=0.258 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 039020 390 LKERFKNFNALFEEIH 405 (481)
Q Consensus 390 iKekf~~FN~~Fee~~ 405 (481)
+|++|++|-.+|-+-.
T Consensus 7 ~keklKkf~~~lk~k~ 22 (26)
T 2pco_A 7 WRRKLKKLRNALKKKL 22 (26)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5888999988886643
No 16
>2oku_A Acyl-COA dehydrogenase family protein; the acyl-COA dehydrogenase, PSI-2, structural genomics, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.48.5.1
Probab=21.69 E-value=1e+02 Score=25.72 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHhHHHHHHHH-HHhhhc--ccCCCCCcccccCHHHHHH
Q 039020 387 KAVLKERFKNFNALFEEIHRTQSTWVVSDEQLQSELRVSISAVVTPAYRSFV-GRFKQY--LEGRSMDKYIKYQPEDIET 463 (481)
Q Consensus 387 r~~iKekf~~FN~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~PaY~~F~-~ky~~~--~~~k~~~KyiKytpe~le~ 463 (481)
-+.+|+++++-...||+....-+. +.|+++++-+.+.+.++---..-.++ .+-.+- .|.|...-|++|..++++.
T Consensus 31 l~~l~~rl~k~~~~~ee~v~~vke--~~nqe~~Df~ARrLvemaa~ii~s~LLl~dA~k~elf~kSA~Vyv~~ae~ev~k 108 (131)
T 2oku_A 31 LQPMKEALARMTDRAEALIAFVTE--QKDQELLDFQARRLVEMTAHAVFGHLLMLAANDDDSFRQSAEVYLRYGQAEQEK 108 (131)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccChHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhHHHHHH
Confidence 345778888888888888776444 56899999998877765444443332 222211 3556667899999998876
Q ss_pred HH
Q 039020 464 LI 465 (481)
Q Consensus 464 ~l 465 (481)
.-
T Consensus 109 ~~ 110 (131)
T 2oku_A 109 ID 110 (131)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 17
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=21.30 E-value=47 Score=25.15 Aligned_cols=16 Identities=13% Similarity=0.611 Sum_probs=14.6
Q ss_pred ccCHHHHHHHHHHhhC
Q 039020 455 KYQPEDIETLIDELFD 470 (481)
Q Consensus 455 Kytpe~le~~l~~LF~ 470 (481)
||+-+++|.+|++++.
T Consensus 6 KYsd~qvE~ll~eli~ 21 (80)
T 2juz_A 6 KYSDAQLSAIVNDMIA 21 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 7899999999999874
No 18
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=20.90 E-value=48 Score=25.07 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=14.6
Q ss_pred ccCHHHHHHHHHHhhC
Q 039020 455 KYQPEDIETLIDELFD 470 (481)
Q Consensus 455 Kytpe~le~~l~~LF~ 470 (481)
||+-+++|.+|++|+.
T Consensus 6 KYsd~qvE~ll~eli~ 21 (80)
T 2juw_A 6 KYSNTQVESLIAEILV 21 (80)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 7899999999999874
No 19
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=20.48 E-value=49 Score=25.18 Aligned_cols=16 Identities=38% Similarity=0.823 Sum_probs=14.5
Q ss_pred ccCHHHHHHHHHHhhC
Q 039020 455 KYQPEDIETLIDELFD 470 (481)
Q Consensus 455 Kytpe~le~~l~~LF~ 470 (481)
||+-+++|.+|++|+.
T Consensus 6 KYsd~qvE~ll~eli~ 21 (83)
T 2jrx_A 6 RYSDEQVEQLLAELLN 21 (83)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 7899999999999874
No 20
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=20.43 E-value=50 Score=25.14 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=14.6
Q ss_pred ccCHHHHHHHHHHhhC
Q 039020 455 KYQPEDIETLIDELFD 470 (481)
Q Consensus 455 Kytpe~le~~l~~LF~ 470 (481)
||+-+++|.+|++|+.
T Consensus 6 KYsd~qvE~ll~eli~ 21 (83)
T 2jpq_A 6 KYTDEQVEKILAEVAL 21 (83)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 7899999999999874
Done!