Your job contains 1 sequence.
>039022
MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV
SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG
SSKQKQIEQGSADTQETAEEAAKILSEGIPNEYAPEDLVANS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 039022
(222 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2125234 - symbol:AT4G31460 species:3702 "Arabi... 705 1.4e-69 1
DICTYBASE|DDB_G0281601 - symbol:DDB_G0281601 species:4468... 221 2.8e-18 1
ASPGD|ASPL0000047744 - symbol:AN1970 species:162425 "Emer... 199 6.0e-16 1
SGD|S000004806 - symbol:MRPL24 "Mitochondrial ribosomal p... 184 2.3e-14 1
POMBASE|SPBC14C8.10 - symbol:mrpl24 "mitochondrial riboso... 152 5.8e-11 1
ZFIN|ZDB-GENE-050522-113 - symbol:mrpl28 "mitochondrial r... 148 1.9e-09 1
TIGR_CMR|APH_0359 - symbol:APH_0359 "ribosomal protein L2... 137 2.2e-09 1
CGD|CAL0002685 - symbol:orf19.828 species:5476 "Candida a... 148 2.3e-09 1
TIGR_CMR|SPO_0974 - symbol:SPO_0974 "ribosomal protein L2... 122 1.1e-07 1
UNIPROTKB|F1RGV8 - symbol:MRPL28 "Uncharacterized protein... 136 1.5e-07 1
TIGR_CMR|NSE_0321 - symbol:NSE_0321 "ribosomal protein L2... 120 2.0e-07 1
UNIPROTKB|A2IDC7 - symbol:MRPL28 "39S ribosomal protein L... 129 3.1e-07 1
MGI|MGI:1915861 - symbol:Mrpl28 "mitochondrial ribosomal ... 133 3.8e-07 1
UNIPROTKB|E2R0V9 - symbol:MRPL28 "Uncharacterized protein... 132 5.3e-07 1
UNIPROTKB|Q4TT37 - symbol:MRPL28 "39S ribosomal protein L... 129 6.9e-07 1
TIGR_CMR|ECH_0484 - symbol:ECH_0484 "50S ribosomal protei... 115 7.6e-07 1
UNIPROTKB|A2IDC6 - symbol:MRPL28 "39S ribosomal protein L... 129 1.0e-06 1
UNIPROTKB|Q13084 - symbol:MRPL28 "39S ribosomal protein L... 129 1.3e-06 1
RGD|1583741 - symbol:Mrpl28 "mitochondrial ribosomal prot... 129 1.3e-06 1
UNIPROTKB|Q2HJJ1 - symbol:MRPL28 "39S ribosomal protein L... 128 1.7e-06 1
UNIPROTKB|F1NTQ8 - symbol:LOC100858238 "Uncharacterized p... 127 2.7e-06 1
TIGR_CMR|CBU_0291 - symbol:CBU_0291 "ribosomal protein L2... 101 3.2e-05 1
UNIPROTKB|Q4TT38 - symbol:MRPL28 "39S ribosomal protein L... 115 7.6e-05 1
UNIPROTKB|J9NU48 - symbol:MRPL28 "Uncharacterized protein... 114 0.00012 1
>TAIR|locus:2125234 [details] [associations]
symbol:AT4G31460 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001383
InterPro:IPR026569 Pfam:PF00830 HAMAP:MF_00373 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AL080283 EMBL:AL161579 eggNOG:COG0227 PANTHER:PTHR13528
EMBL:AF412057 EMBL:AY087804 EMBL:BT006351 IPI:IPI00538523
PIR:T10676 RefSeq:NP_194874.1 UniGene:At.3589
ProteinModelPortal:Q9SV23 SMR:Q9SV23 PaxDb:Q9SV23 PRIDE:Q9SV23
EnsemblPlants:AT4G31460.1 GeneID:829273 KEGG:ath:AT4G31460
TAIR:At4g31460 HOGENOM:HOG000242354 InParanoid:Q9SV23 OMA:DGGNKSR
PhylomeDB:Q9SV23 ProtClustDB:CLSN2685857 ArrayExpress:Q9SV23
Genevestigator:Q9SV23 Uniprot:Q9SV23
Length = 212
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 131/162 (80%), Positives = 145/162 (89%)
Query: 1 MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60
MAFRGKEMMKKLV+KVG E N+ P +KE LK CVPD+++VM RAKRGL+AG+HIQ+GNRV
Sbjct: 1 MAFRGKEMMKKLVKKVGAE-NITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRV 59
Query: 61 SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
SEDGGNK+RR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDKAGGIDEYLLKTPY KM
Sbjct: 60 SEDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKM 119
Query: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDM 162
DTEMGLYWKTK+E Y ELGQ EVAFF PE+EAKLEQ FKD+
Sbjct: 120 DTEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDL 161
>DICTYBASE|DDB_G0281601 [details] [associations]
symbol:DDB_G0281601 species:44689 "Dictyostelium
discoideum" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001383
InterPro:IPR026569 Pfam:PF00830 dictyBase:DDB_G0281601
GO:GO:0006412 GO:GO:0005840 EMBL:AAFI02000042 GO:GO:0003735
eggNOG:COG0227 PANTHER:PTHR13528 RefSeq:XP_640528.1
ProteinModelPortal:Q54TR3 EnsemblProtists:DDB0204554 GeneID:8623138
KEGG:ddi:DDB_G0281601 InParanoid:Q54TR3 OMA:CIDKAGS
ProtClustDB:CLSZ2430522 Uniprot:Q54TR3
Length = 142
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 49/119 (41%), Positives = 70/119 (58%)
Query: 38 RIVMNRAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTH 97
R VM RA+RGL+ GK I F ++ S KTRR WKPNVQ K S ++D +IRV +TT+
Sbjct: 14 RSVMKRAQRGLYGGKDIIFSDQ-SSFSTRKTRRTWKPNVQTKTYHSDVLDSNIRVSLTTY 72
Query: 98 ALRCIDKAGGIDEYLLKTPYHKMDTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLE 156
+RCIDKAG D Y++ T + +E+G K ++ ++ + EEE KL+
Sbjct: 73 TIRCIDKAGSFDNYIIHTKDKDLASELGSDLKVAMKHELQKKALLILENEKQEEELKLK 131
>ASPGD|ASPL0000047744 [details] [associations]
symbol:AN1970 species:162425 "Emericella nidulans"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001383 InterPro:IPR026569 Pfam:PF00830 GO:GO:0006412
EMBL:BN001307 GO:GO:0005840 GO:GO:0003735 EMBL:AACD01000029
eggNOG:COG0227 PANTHER:PTHR13528 OrthoDB:EOG4F21CZ
RefSeq:XP_659574.1 ProteinModelPortal:Q5BBW0 STRING:Q5BBW0
EnsemblFungi:CADANIAT00008630 GeneID:2875099 KEGG:ani:AN1970.2
HOGENOM:HOG000190886 OMA:KTRRFWK Uniprot:Q5BBW0
Length = 203
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 47/119 (39%), Positives = 72/119 (60%)
Query: 40 VMNRAKRGLFAGKHIQFGNRVSEDGGN--KTRRNWKPNVQEKRLFSYIMDRHIRVKVTTH 97
+ ++ GL+ G IQFGN++S+ G N KTRR WKPNV+ K+L+S + + + +KVT
Sbjct: 49 MFRQSNTGLYGGATIQFGNKISQ-GRNEGKTRRFWKPNVRRKKLWSEALQQFLFIKVTRK 107
Query: 98 ALRCIDKAGGIDEYLLKTPYHKMDTEMGLY-WKTK-----IEKLYEELGQTEVAFFTPE 150
ALR I KAGG+D+YLL ++ E+G++ WK + +K+ E+ Q PE
Sbjct: 108 ALRTIRKAGGLDQYLLDDRPARIK-ELGVFGWKLRWQVMQTDKIQEQFKQERKRLGLPE 165
>SGD|S000004806 [details] [associations]
symbol:MRPL24 "Mitochondrial ribosomal protein of the large
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA;IDA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005762 "mitochondrial large ribosomal subunit"
evidence=IDA] [GO:0032543 "mitochondrial translation" evidence=IC]
InterPro:IPR001383 InterPro:IPR026569 Pfam:PF00830 SGD:S000004806
EMBL:BK006946 GO:GO:0005762 GO:GO:0003735 GO:GO:0032543 EMBL:Z47815
eggNOG:COG0227 PANTHER:PTHR13528 OrthoDB:EOG4F21CZ EMBL:AY557982
PIR:S50921 RefSeq:NP_013918.1 ProteinModelPortal:P36525 SMR:P36525
DIP:DIP-3847N IntAct:P36525 MINT:MINT-550659 STRING:P36525
PaxDb:P36525 EnsemblFungi:YMR193W GeneID:855231 KEGG:sce:YMR193W
CYGD:YMR193w HOGENOM:HOG000247967 OMA:IKMTAKV NextBio:978771
Genevestigator:P36525 GermOnline:YMR193W Uniprot:P36525
Length = 258
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 46/132 (34%), Positives = 70/132 (53%)
Query: 14 RKVGGEKNLAPGVKESL-----KKCVPDSRI----VMNRAKRGLFAGKHIQFGNRVSEDG 64
RK+ + N G + L +K PD + + ++ +GL+ G +QFGN +SE
Sbjct: 30 RKIAKQPNYQVGDAKPLHMPKERKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESK 89
Query: 65 GNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEM 124
KTR+ W PNV +K L+S ++R I +K+T L+ I K GGID YL K ++ E+
Sbjct: 90 A-KTRKKWLPNVVKKGLWSETLNRKISIKMTAKVLKTISKEGGIDNYLTKEKSARIK-EL 147
Query: 125 G-LYWKTKIEKL 135
G WK + L
Sbjct: 148 GPTGWKLRYRVL 159
>POMBASE|SPBC14C8.10 [details] [associations]
symbol:mrpl24 "mitochondrial ribosomal protein subunit
L28 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0032543 "mitochondrial translation" evidence=NAS]
InterPro:IPR001383 InterPro:IPR026569 Pfam:PF00830
PomBase:SPBC14C8.10 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005762 GO:GO:0003735 GO:GO:0032543 eggNOG:COG0227
PANTHER:PTHR13528 PIR:T39438 RefSeq:NP_595913.1
ProteinModelPortal:O60091 EnsemblFungi:SPBC14C8.10.1 GeneID:2539852
KEGG:spo:SPBC14C8.10 OrthoDB:EOG4F21CZ NextBio:20800999
Uniprot:O60091
Length = 176
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 42 NRAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRC 101
++ ++ L+ G + GN G+KTRR W PN K L+S +++ + VT+ LR
Sbjct: 25 SKFQQNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRT 84
Query: 102 IDKAGGIDEYLLK-TP 116
IDK GG+DEYL+K TP
Sbjct: 85 IDKEGGLDEYLVKSTP 100
>ZFIN|ZDB-GENE-050522-113 [details] [associations]
symbol:mrpl28 "mitochondrial ribosomal protein L28"
species:7955 "Danio rerio" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
InterPro:IPR026569 ZFIN:ZDB-GENE-050522-113 GO:GO:0005840
GO:GO:0003735 PANTHER:PTHR13528 CTD:10573 HOVERGEN:HBG083707
EMBL:BC095131 IPI:IPI00503064 RefSeq:NP_001019570.1
UniGene:Dr.45778 ProteinModelPortal:Q503Y2 STRING:Q503Y2
GeneID:554098 KEGG:dre:554098 InParanoid:Q503Y2 NextBio:20880665
ArrayExpress:Q503Y2 Uniprot:Q503Y2
Length = 252
Score = 148 (57.2 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 38/119 (31%), Positives = 64/119 (53%)
Query: 47 GLFAGKHIQFGNRVSEDGGNKTR--RNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDK 104
GL+ G+ G R ++D TR + WKP + + L+S I+D+ V VT+ AL ID
Sbjct: 78 GLWGGEGWISGFRYAKDDKLSTRLPKTWKPQLFTRELYSEILDQKFSVTVTSRALDLIDA 137
Query: 105 AGGIDEYLLKTPYHKMDTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMK 163
A G D Y+LKTP ++++ G+ K + L + + + PE++ + E+ +K K
Sbjct: 138 AFGFDFYILKTPKQDLNSKFGMNLK---RAMLLRLARKDTDLY-PEDQQRKEKIYKRYK 192
>TIGR_CMR|APH_0359 [details] [associations]
symbol:APH_0359 "ribosomal protein L28" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001383 InterPro:IPR026569 Pfam:PF00830 HAMAP:MF_00373
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0227 TIGRFAMs:TIGR00009
RefSeq:YP_504966.1 ProteinModelPortal:Q2GKY5 STRING:Q2GKY5
GeneID:3931037 KEGG:aph:APH_0359 PATRIC:20949320
HOGENOM:HOG000040464 KO:K02902 OMA:ELSMRAR ProtClustDB:PRK00359
BioCyc:APHA212042:GHPM-388-MONOMER PANTHER:PTHR13528 Uniprot:Q2GKY5
Length = 103
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 34/83 (40%), Positives = 46/83 (55%)
Query: 51 GKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDE 110
G FGN+VS KT+R++ N+ L S ++ R RVKV + LR ID GG+D
Sbjct: 9 GASKSFGNKVSHSN-RKTKRSYLVNLHNVTLVSEVLGRKFRVKVASRTLRTIDYKGGLDL 67
Query: 111 YLLKTPYHKMDTEMGLYWKTKIE 133
YLL T K+ TE+ K KI+
Sbjct: 68 YLLNTSSRKL-TEVARKIKRKIK 89
>CGD|CAL0002685 [details] [associations]
symbol:orf19.828 species:5476 "Candida albicans" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001383 Pfam:PF00830 CGD:CAL0002685 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AACQ01000019 EMBL:AACQ01000018
eggNOG:COG0227 RefSeq:XP_720952.1 RefSeq:XP_721074.1
ProteinModelPortal:Q5AHG8 STRING:Q5AHG8 GeneID:3637292
GeneID:3637420 KEGG:cal:CaO19.828 KEGG:cal:CaO19.8448
Uniprot:Q5AHG8
Length = 265
Score = 148 (57.2 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 45/131 (34%), Positives = 69/131 (52%)
Query: 11 KLVRKVGGEK--NLA-PGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRVSEDGGNK 67
K V ++G E+ N++ P K + R R RGL+ G + SE NK
Sbjct: 52 KNVYEIGQERPDNISIPKDLPEFPKYEYEPRF-FKRQNRGLYGGLQRKRSKSCSEYL-NK 109
Query: 68 TRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLY 127
T R +PN Q +L+S ++R +R++V T L+ I K GG+D+YLLK+ ++ T MGL
Sbjct: 110 TLRAHRPNAQWTKLWSETLNRRLRLRVATRVLKTISKEGGLDQYLLKSTPARVKT-MGLK 168
Query: 128 -WKTKIEKLYE 137
W+ + L E
Sbjct: 169 AWQLRYRILQE 179
>TIGR_CMR|SPO_0974 [details] [associations]
symbol:SPO_0974 "ribosomal protein L28" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR001383
Pfam:PF00830 HAMAP:MF_00373 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:COG0227
TIGRFAMs:TIGR00009 HOGENOM:HOG000040464 KO:K02902 OMA:ELSMRAR
ProtClustDB:PRK00359 RefSeq:YP_166226.1 ProteinModelPortal:Q5LUS9
GeneID:3194737 KEGG:sil:SPO0974 PATRIC:23375235 Uniprot:Q5LUS9
Length = 95
Score = 122 (48.0 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 44 AKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCID 103
++R GK GN VS NKTRR + PN+ + L S + R ++++++ ALR +D
Sbjct: 2 SRRCELTGKGPMTGNNVSH-ANNKTRRRFLPNLNDVTLQSETLGRGVKLRISAAALRSVD 60
Query: 104 KAGGIDEYLLKTPYHKMDTEMGLYWKTKIEK 134
GG+D +L K + ++ L K +I K
Sbjct: 61 HRGGLDAFLAKAKDEDL-SDAALKVKKEIAK 90
>UNIPROTKB|F1RGV8 [details] [associations]
symbol:MRPL28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR026569 GO:GO:0005739 GO:GO:0003735 PANTHER:PTHR13528
GeneTree:ENSGT00390000017359 OMA:GIWGGEA EMBL:FP103065
RefSeq:XP_003124744.1 UniGene:Ssc.55033 Ensembl:ENSSSCT00000008748
GeneID:100524194 KEGG:ssc:100524194 Uniprot:F1RGV8
Length = 256
Score = 136 (52.9 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 47 GLFAGKHIQFGNR-VSEDGGNK-TRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDK 104
GL+ G+ G+R V+ D +K R+ WKP + ++ L+S I+D+ V VT L ID+
Sbjct: 78 GLWGGEGWVLGHRYVNNDKLSKRVRKVWKPQLFQRELYSEILDKRFTVTVTMRTLDLIDQ 137
Query: 105 AGGIDEYLLKTPYHKMDTEMGL 126
A G D Y+LKTP + ++ G+
Sbjct: 138 ACGFDFYILKTPKEDLCSKFGM 159
>TIGR_CMR|NSE_0321 [details] [associations]
symbol:NSE_0321 "ribosomal protein L28" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR001383 Pfam:PF00830 HAMAP:MF_00373 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0227 TIGRFAMs:TIGR00009 HOGENOM:HOG000040464 KO:K02902
OMA:ELSMRAR RefSeq:YP_506211.1 ProteinModelPortal:Q2GE85
STRING:Q2GE85 GeneID:3932186 KEGG:nse:NSE_0321 PATRIC:22680733
ProtClustDB:CLSK2528063 BioCyc:NSEN222891:GHFU-347-MONOMER
Uniprot:Q2GE85
Length = 102
Score = 120 (47.3 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 55 QFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLK 114
Q GN VS KT++ + PN+Q +FS ++ + R KV+ +R ID GG+D++L
Sbjct: 13 QNGNMVSHSN-RKTKKRFMPNLQRVTVFSDVLKQKFRFKVSAKTIRTIDFKGGLDDFLRN 71
Query: 115 TPYHKMDTEMGLYWKTKIEK 134
T K+ ++ L K +I K
Sbjct: 72 TKNSKL-SKSALVLKKRIMK 90
>UNIPROTKB|A2IDC7 [details] [associations]
symbol:MRPL28 "39S ribosomal protein L28, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR026569 GO:GO:0005739 GO:GO:0005840 GO:GO:0003735
EMBL:AC005202 EMBL:Z97634 PANTHER:PTHR13528 HOGENOM:HOG000010298
HOVERGEN:HBG083707 UniGene:Hs.513230 HGNC:HGNC:14484
IPI:IPI00852785 Ensembl:ENST00000450882 Uniprot:A2IDC7
Length = 194
Score = 129 (50.5 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 41/153 (26%), Positives = 73/153 (47%)
Query: 14 RKVGGEKNLAP--GVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRVSEDG--GNKTR 69
R G + + P G +E ++ VP ++RGL+ G+ G + + + +
Sbjct: 44 RPHGAKFKINPKNGQRERVED-VPIPIYFPPESQRGLWGGEGWILGQIYANNDKLSKRLK 102
Query: 70 RNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLYWK 129
+ WKP + E+ +S I+D+ V VT L ID+A G+D Y+LKTP + ++ G+ K
Sbjct: 103 KVWKPQLFEREFYSEILDKKFTVTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLK 162
Query: 130 T-KIEKLYEELGQTEVAFFTPEEEAKLEQDFKD 161
+ +L + Q PE A + +K+
Sbjct: 163 RGMLLRLARQDPQLHPE--DPERRAAIYDKYKE 193
>MGI|MGI:1915861 [details] [associations]
symbol:Mrpl28 "mitochondrial ribosomal protein L28"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005761 "mitochondrial ribosome"
evidence=ISO] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001383 InterPro:IPR026569 Pfam:PF00830 MGI:MGI:1915861
GO:GO:0006412 GO:GO:0003735 GO:GO:0005761 PANTHER:PTHR13528
CTD:10573 eggNOG:NOG259466 GeneTree:ENSGT00390000017359
HOGENOM:HOG000010298 HOVERGEN:HBG083707 OMA:GIWGGEA
OrthoDB:EOG46T32C EMBL:AK003727 EMBL:AK031701 EMBL:AK046544
EMBL:AK163190 EMBL:BC002293 EMBL:BC005797 EMBL:BC080753
EMBL:BC100322 EMBL:BC145680 EMBL:BC145682 IPI:IPI00271726
RefSeq:NP_077189.2 UniGene:Mm.273102 ProteinModelPortal:Q9D1B9
STRING:Q9D1B9 PhosphoSite:Q9D1B9 PaxDb:Q9D1B9 PRIDE:Q9D1B9
Ensembl:ENSMUST00000025014 GeneID:68611 KEGG:mmu:68611
UCSC:uc008bdl.2 InParanoid:A6H5Y0 NextBio:327552 Bgee:Q9D1B9
CleanEx:MM_MRPL28 Genevestigator:Q9D1B9
GermOnline:ENSMUSG00000024181 Uniprot:Q9D1B9
Length = 257
Score = 133 (51.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 44 AKRGLFAGKHIQFGNRVSEDG--GNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRC 101
+++GL+ G+ + G R + + + ++ WKP + + L+S I+D+ V VT L
Sbjct: 75 SQQGLWGGEGLILGYRYANNDKLSKRVKKVWKPQLFTRELYSEILDKKFTVTVTMRTLDL 134
Query: 102 IDKAGGIDEYLLKTPYHKMDTEMGL 126
ID+A G D Y+LKTP + ++ G+
Sbjct: 135 IDEAYGFDFYILKTPKEDLGSKFGM 159
>UNIPROTKB|E2R0V9 [details] [associations]
symbol:MRPL28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR026569 GO:GO:0003735 PANTHER:PTHR13528
CTD:10573 GeneTree:ENSGT00390000017359 OMA:GIWGGEA
EMBL:AAEX03004692 RefSeq:XP_537023.3 Ensembl:ENSCAFT00000031293
GeneID:479897 KEGG:cfa:479897 Uniprot:E2R0V9
Length = 257
Score = 132 (51.5 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 37/115 (32%), Positives = 56/115 (48%)
Query: 14 RKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNR-VSEDGGNK-TRRN 71
R VG G + + VP A+ GL+ G+ G R V +D +K ++
Sbjct: 46 RGVGAGAGAGAGGRRERVQDVPIPVYRPPEAQLGLWGGEGWVVGYRYVGDDKLSKRVKKV 105
Query: 72 WKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGL 126
WKP + ++ L+S I+D V VT L ID A G D Y+LKTP + ++ G+
Sbjct: 106 WKPQLLQRELYSEILDTKFAVTVTARTLDLIDAAYGFDFYILKTPEEDLCSKFGM 160
>UNIPROTKB|Q4TT37 [details] [associations]
symbol:MRPL28 "39S ribosomal protein L28, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR026569 GO:GO:0005739 GO:GO:0005840 GO:GO:0003735
EMBL:AC005202 EMBL:Z97634 PANTHER:PTHR13528 HOGENOM:HOG000010298
HOVERGEN:HBG083707 UniGene:Hs.513230 HGNC:HGNC:14484
IPI:IPI00658191 Ensembl:ENST00000447696 Uniprot:Q4TT37
Length = 218
Score = 129 (50.5 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 41/153 (26%), Positives = 73/153 (47%)
Query: 14 RKVGGEKNLAP--GVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRVSEDG--GNKTR 69
R G + + P G +E ++ VP ++RGL+ G+ G + + + +
Sbjct: 44 RPHGAKFKINPKNGQRERVED-VPIPIYFPPESQRGLWGGEGWILGQIYANNDKLSKRLK 102
Query: 70 RNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLYWK 129
+ WKP + E+ +S I+D+ V VT L ID+A G+D Y+LKTP + ++ G+ K
Sbjct: 103 KVWKPQLFEREFYSEILDKKFTVTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLK 162
Query: 130 T-KIEKLYEELGQTEVAFFTPEEEAKLEQDFKD 161
+ +L + Q PE A + +K+
Sbjct: 163 RGMLLRLARQDPQLHPE--DPERRAAIYDKYKE 193
>TIGR_CMR|ECH_0484 [details] [associations]
symbol:ECH_0484 "50S ribosomal protein L28" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR001383 Pfam:PF00830 HAMAP:MF_00373
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:COG0227 TIGRFAMs:TIGR00009
HOGENOM:HOG000040464 KO:K02902 OMA:ELSMRAR ProtClustDB:PRK00359
RefSeq:YP_507300.1 ProteinModelPortal:Q2GGY3 STRING:Q2GGY3
GeneID:3927557 KEGG:ech:ECH_0484 PATRIC:20576440
BioCyc:ECHA205920:GJNR-486-MONOMER Uniprot:Q2GGY3
Length = 100
Score = 115 (45.5 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 51 GKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDE 110
G+ FGN+VS KT+R + N+ L S I++R + KV++ LR ++ GG+D
Sbjct: 9 GQGKSFGNKVSHSN-RKTKRAYLVNLHNVTLVSDILNRKFKFKVSSRTLRTVNYKGGLDL 67
Query: 111 YLLKTPYHKM 120
YLL T K+
Sbjct: 68 YLLNTSSRKL 77
>UNIPROTKB|A2IDC6 [details] [associations]
symbol:MRPL28 "39S ribosomal protein L28, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR026569 GO:GO:0005739 GO:GO:0005840 GO:GO:0003735
EMBL:AC005202 EMBL:Z97634 PANTHER:PTHR13528 HOGENOM:HOG000010298
HOVERGEN:HBG083707 UniGene:Hs.513230 HGNC:HGNC:14484
IPI:IPI00852855 Ensembl:ENST00000441883 Uniprot:A2IDC6
Length = 240
Score = 129 (50.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 41/153 (26%), Positives = 73/153 (47%)
Query: 14 RKVGGEKNLAP--GVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRVSEDG--GNKTR 69
R G + + P G +E ++ VP ++RGL+ G+ G + + + +
Sbjct: 44 RPHGAKFKINPKNGQRERVED-VPIPIYFPPESQRGLWGGEGWILGQIYANNDKLSKRLK 102
Query: 70 RNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLYWK 129
+ WKP + E+ +S I+D+ V VT L ID+A G+D Y+LKTP + ++ G+ K
Sbjct: 103 KVWKPQLFEREFYSEILDKKFTVTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLK 162
Query: 130 T-KIEKLYEELGQTEVAFFTPEEEAKLEQDFKD 161
+ +L + Q PE A + +K+
Sbjct: 163 RGMLLRLARQDPQLHPE--DPERRAAIYDKYKE 193
>UNIPROTKB|Q13084 [details] [associations]
symbol:MRPL28 "39S ribosomal protein L28, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=NAS] [GO:0005761 "mitochondrial ribosome"
evidence=IDA;NAS] [GO:0006412 "translation" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR026569 GO:GO:0006412 EMBL:CH471112 GO:GO:0003735
EMBL:AE006463 GO:GO:0005761 EMBL:Z97634 PANTHER:PTHR13528 CTD:10573
eggNOG:NOG259466 HOVERGEN:HBG083707 EMBL:AK315180 EMBL:BC000507
EMBL:BC000990 EMBL:U19796 EMBL:BT009857 IPI:IPI00172594
RefSeq:NP_006419.2 UniGene:Hs.513230 ProteinModelPortal:Q13084
IntAct:Q13084 MINT:MINT-1383002 STRING:Q13084 PhosphoSite:Q13084
DMDM:85695426 PaxDb:Q13084 PRIDE:Q13084 DNASU:10573
Ensembl:ENST00000199706 Ensembl:ENST00000389675 GeneID:10573
KEGG:hsa:10573 UCSC:uc002cgs.2 GeneCards:GC16M000357
HGNC:HGNC:14484 HPA:HPA030594 MIM:604853 neXtProt:NX_Q13084
PharmGKB:PA30515 GenomeRNAi:10573 NextBio:40127 ArrayExpress:Q13084
Bgee:Q13084 CleanEx:HS_MRPL28 Genevestigator:Q13084
GermOnline:ENSG00000086504 Uniprot:Q13084
Length = 256
Score = 129 (50.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 41/153 (26%), Positives = 73/153 (47%)
Query: 14 RKVGGEKNLAP--GVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRVSEDG--GNKTR 69
R G + + P G +E ++ VP ++RGL+ G+ G + + + +
Sbjct: 44 RPHGAKFKINPKNGQRERVED-VPIPIYFPPESQRGLWGGEGWILGQIYANNDKLSKRLK 102
Query: 70 RNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLYWK 129
+ WKP + E+ +S I+D+ V VT L ID+A G+D Y+LKTP + ++ G+ K
Sbjct: 103 KVWKPQLFEREFYSEILDKKFTVTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLK 162
Query: 130 T-KIEKLYEELGQTEVAFFTPEEEAKLEQDFKD 161
+ +L + Q PE A + +K+
Sbjct: 163 RGMLLRLARQDPQLHPE--DPERRAAIYDKYKE 193
>RGD|1583741 [details] [associations]
symbol:Mrpl28 "mitochondrial ribosomal protein L28"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005761 "mitochondrial ribosome" evidence=ISO] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001383 InterPro:IPR026569 Pfam:PF00830 RGD:1583741
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CH473948 PANTHER:PTHR13528 CTD:10573
GeneTree:ENSGT00390000017359 OrthoDB:EOG46T32C EMBL:AC126071
IPI:IPI00204135 RefSeq:XP_001061401.2 RefSeq:XP_003750842.1
RefSeq:XP_003752357.1 RefSeq:XP_573060.3 UniGene:Rn.163110
Ensembl:ENSRNOT00000027662 GeneID:497876 KEGG:rno:497876
UCSC:RGD:1583741 NextBio:697882 Uniprot:D3ZJY1
Length = 257
Score = 129 (50.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 44 AKRGLFAGKHIQFGNRVSEDG--GNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRC 101
+++ L+ G+ + G R + + N+ ++ WKP + + L+S I+D+ V VT L
Sbjct: 75 SQQELWGGEGLILGYRYANNDKLSNRVKKVWKPQLFTRELYSEILDKKFTVTVTMRTLDL 134
Query: 102 IDKAGGIDEYLLKTPYHKMDTEMGL 126
ID+A G D Y+LKTP + ++ G+
Sbjct: 135 IDEAYGFDFYILKTPEEDLCSKFGM 159
>UNIPROTKB|Q2HJJ1 [details] [associations]
symbol:MRPL28 "39S ribosomal protein L28, mitochondrial"
species:9913 "Bos taurus" [GO:0005761 "mitochondrial ribosome"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR026569 GO:GO:0003735 GO:GO:0005761
PANTHER:PTHR13528 EMBL:BC105311 IPI:IPI00696397
RefSeq:NP_001039461.1 UniGene:Bt.20487 ProteinModelPortal:Q2HJJ1
STRING:Q2HJJ1 PRIDE:Q2HJJ1 Ensembl:ENSBTAT00000022057 GeneID:508216
KEGG:bta:508216 CTD:10573 eggNOG:NOG259466
GeneTree:ENSGT00390000017359 HOGENOM:HOG000010298
HOVERGEN:HBG083707 InParanoid:Q2HJJ1 OMA:GIWGGEA OrthoDB:EOG46T32C
NextBio:20868412 Uniprot:Q2HJJ1
Length = 256
Score = 128 (50.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 47 GLFAGKHIQFGNR-VSEDGGNK-TRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDK 104
GL+ G+ G+R V+ D +K ++ WKP + ++ L+S I+D V VT L ID+
Sbjct: 78 GLWGGEGWLKGHRYVNNDKFSKRVKKVWKPQLFQRELYSEILDTRFTVTVTMRTLDLIDE 137
Query: 105 AGGIDEYLLKTPYHKMDTEMGL 126
A G D Y+LKTP + ++ G+
Sbjct: 138 AYGFDFYILKTPKEDLCSKFGM 159
>UNIPROTKB|F1NTQ8 [details] [associations]
symbol:LOC100858238 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR026569 GO:GO:0005739 GO:GO:0003735 PANTHER:PTHR13528
GeneTree:ENSGT00390000017359 OMA:GIWGGEA EMBL:AADN02049264
EMBL:AADN02049265 IPI:IPI00822653 Ensembl:ENSGALT00000012082
ArrayExpress:F1NTQ8 Uniprot:F1NTQ8
Length = 271
Score = 127 (49.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 33/104 (31%), Positives = 56/104 (53%)
Query: 25 GVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRVSEDGGNKTR--RNWKPNVQEKRLF 82
G +E ++ VP + A GL+ G+ G R + + TR + WKP + +++ +
Sbjct: 83 GERERVQD-VPVPVFLPRAADEGLWGGEGWIRGFRYANNDKLSTRVPKIWKPQLFKRQFY 141
Query: 83 SYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGL 126
S I+D + + VT L ID+A G D Y+LKTP M +++G+
Sbjct: 142 SEILDAKLTITVTMRTLDLIDQAYGFDFYILKTPKADMCSKLGM 185
>TIGR_CMR|CBU_0291 [details] [associations]
symbol:CBU_0291 "ribosomal protein L28" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001383 Pfam:PF00830 HAMAP:MF_00373 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
eggNOG:COG0227 HOGENOM:HOG000040462 TIGRFAMs:TIGR00009 KO:K02902
ProtClustDB:PRK00359 OMA:SHARNAT RefSeq:NP_819335.1
ProteinModelPortal:Q83EM4 SMR:Q83EM4 GeneID:1208173
KEGG:cbu:CBU_0291 PATRIC:17929273
BioCyc:CBUR227377:GJ7S-297-MONOMER Uniprot:Q83EM4
Length = 79
Score = 101 (40.6 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 51 GKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDE 110
GK Q GN VS KT R + PN++++R + R I + V+TH +R IDK G I+
Sbjct: 9 GKRPQSGNNVSH-ANKKTNRRFLPNLKKRRFWLPDEKRFITLTVSTHGMRIIDKLG-INA 66
Query: 111 YLLK 114
L K
Sbjct: 67 VLKK 70
>UNIPROTKB|Q4TT38 [details] [associations]
symbol:MRPL28 "39S ribosomal protein L28, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR026569
GO:GO:0005739 GO:GO:0005840 GO:GO:0003735 EMBL:AC005202 EMBL:Z97634
PANTHER:PTHR13528 HOGENOM:HOG000010298 HOVERGEN:HBG083707
OMA:GIWGGEA OrthoDB:EOG46T32C UniGene:Hs.513230 HGNC:HGNC:14484
IPI:IPI00719120 Ensembl:ENST00000397734 Ensembl:ENST00000397735
Uniprot:Q4TT38
Length = 256
Score = 115 (45.5 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 39/153 (25%), Positives = 71/153 (46%)
Query: 14 RKVGGEKNLAP--GVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRVSEDG--GNKTR 69
R G + + P G +E ++ VP ++RGL+ G+ G + + + +
Sbjct: 44 RPHGAKFKINPKNGQRERVED-VPIPIYFPPESQRGLWGGEGWILGQIYANNDKLSKRLK 102
Query: 70 RNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLYWK 129
+ WKP + E+ +S I+D+ V VT L ID+A G+D Y+LK + ++ G+ K
Sbjct: 103 KVWKPQLFEREFYSEILDKKFTVTVTMRTLDLIDEAYGLDFYILKASGEDLCSKFGMDLK 162
Query: 130 T-KIEKLYEELGQTEVAFFTPEEEAKLEQDFKD 161
+ +L + Q PE A + +K+
Sbjct: 163 RGMLLRLARQDPQLHPE--DPERRAAIYDKYKE 193
>UNIPROTKB|J9NU48 [details] [associations]
symbol:MRPL28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR026569 GO:GO:0003735 PANTHER:PTHR13528
GeneTree:ENSGT00390000017359 EMBL:AAEX03004692
Ensembl:ENSCAFT00000048692 Uniprot:J9NU48
Length = 278
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 34/103 (33%), Positives = 49/103 (47%)
Query: 14 RKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNR-VSEDGGNK-TRRN 71
R VG G + + VP A+ GL+ G+ G R V +D +K ++
Sbjct: 106 RGVGAGAGAGAGGRRERVQDVPIPVYRPPEAQLGLWGGEGWVVGYRYVGDDKLSKRVKKV 165
Query: 72 WKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLK 114
WKP + ++ L+S I+D V VT L ID A G D Y+LK
Sbjct: 166 WKPQLLQRELYSEILDTKFAVTVTARTLDLIDAAYGFDFYILK 208
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 222 209 0.00079 112 3 11 23 0.41 33
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 586 (62 KB)
Total size of DFA: 164 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.40u 0.16s 18.56t Elapsed: 00:00:00
Total cpu time: 18.40u 0.16s 18.56t Elapsed: 00:00:00
Start: Fri May 10 05:40:59 2013 End: Fri May 10 05:40:59 2013