BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039022
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P36525|RM24_YEAST 54S ribosomal protein L24, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRPL24 PE=1
SV=2
Length = 258
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 13 VRKVGGEKNLAPGVKESL-----KKCVPDSRI----VMNRAKRGLFAGKHIQFGNRVSED 63
RK+ + N G + L +K PD + + ++ +GL+ G +QFGN +SE
Sbjct: 29 TRKIAKQPNYQVGDAKPLHMPKERKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISES 88
Query: 64 GGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLK 114
KTR+ W PNV +K L+S ++R I +K+T L+ I K GGID YL K
Sbjct: 89 KA-KTRKKWLPNVVKKGLWSETLNRKISIKMTAKVLKTISKEGGIDNYLTK 138
>sp|A0L5U1|RL28_MAGSM 50S ribosomal protein L28 OS=Magnetococcus sp. (strain MC-1)
GN=rpmB PE=3 SV=1
Length = 95
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 44 AKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCID 103
A++ GK Q GN+VS KTRR W PN+Q K L+S + + ++V ++T ALR +D
Sbjct: 2 ARKRTLGGKAPQAGNKVSHSQ-RKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 60
Query: 104 KAGGIDEYLLKTPYHKMDTEM 124
AGG+D YLLK ++ M
Sbjct: 61 NAGGLDNYLLKILPSELTPSM 81
>sp|A9HS05|RL28_GLUDA 50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rpmB PE=3 SV=1
Length = 100
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 44 AKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCID 103
++R GK + GN VS NK+RR + PN+QE L S I+ +R++++T+ +R ++
Sbjct: 2 SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVE 60
Query: 104 KAGGIDEYLLKTPYHKMDTE 123
GG+D +LL TP K+ TE
Sbjct: 61 HNGGLDAFLLSTPNRKLPTE 80
>sp|Q5FUP5|RL28_GLUOX 50S ribosomal protein L28 OS=Gluconobacter oxydans (strain 621H)
GN=rpmB PE=3 SV=1
Length = 100
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 44 AKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCID 103
++R GK + GN VS NK+RR + PN+QE L S I+ +R++++T +R ++
Sbjct: 2 SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETTLISDILGASVRMRLSTDGIRTVE 60
Query: 104 KAGGIDEYLLKTPYHKMDTE 123
GG+D +LL TP K+ TE
Sbjct: 61 HNGGLDSFLLGTPNRKLPTE 80
>sp|B6IW31|RL28_RHOCS 50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rpmB PE=3 SV=1
Length = 99
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q GN VS NK+RR W PN+QE L S + R +R++++T+ +R I+ GG+
Sbjct: 7 VTGKGVQTGNNVSH-ANNKSRRRWLPNLQETSLLSDTLGRMVRLRLSTNGIRTIEHKGGL 65
Query: 109 DEYLLKTPYHKMDTE 123
D LL P +++ +
Sbjct: 66 DAALLDIPDARLNQD 80
>sp|O60091|RM24_SCHPO 54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mrpl24 PE=3 SV=1
Length = 176
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 41 MNRAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALR 100
++ ++ L+ G + GN G+KTRR W PN K L+S +++ + VT+ LR
Sbjct: 24 FSKFQQNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLR 83
Query: 101 CIDKAGGIDEYLLKTPYHKMDTEMGL 126
IDK GG+DEYL+K+ ++ + +GL
Sbjct: 84 TIDKEGGLDEYLVKSTPSRLKS-LGL 108
>sp|Q9FDL9|RL28_ZYMMO 50S ribosomal protein L28 OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=rpmB PE=3 SV=1
Length = 95
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK Q GN VS N+T+R + PN+Q L S + + + ++V+TH LR ++ GG+
Sbjct: 7 LTGKGRQVGNNVSH-ANNRTKRTFLPNLQNVTLISDALGKGVTLRVSTHGLRSVEHVGGL 65
Query: 109 DEYLLKTPYHKMDT 122
D +LLKT K+ T
Sbjct: 66 DNWLLKTKNEKLST 79
>sp|Q2RXY0|RL28_RHORT 50S ribosomal protein L28 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rpmB PE=3 SV=1
Length = 99
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 44 AKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCID 103
++R GK +Q GN VS K+RR + PN+Q L S ++ +R++++ H LR ++
Sbjct: 2 SRRCAVTGKGVQTGNNVSHSN-IKSRRRFLPNLQVNSLMSDLLREPVRMRLSAHGLRTVE 60
Query: 104 KAGGIDEYLLKTPYHKMDTEM 124
GGID +LL TP ++ E+
Sbjct: 61 HRGGIDAFLLSTPSVELTVEL 81
>sp|A7HTU2|RL28_PARL1 50S ribosomal protein L28 OS=Parvibaculum lavamentivorans (strain
DS-1 / DSM 13023 / NCIMB 13966) GN=rpmB PE=3 SV=1
Length = 96
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 44 AKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCID 103
++R +GK + GN VS KTRR + PN+ + L S + R ++V+ HALR ++
Sbjct: 2 SRRCELSGKAVMSGNNVSH-ANRKTRRRFLPNLCQVTLISDALGRQFSLRVSAHALRSVE 60
Query: 104 KAGGIDEYLLKTPYHKMDTEMGLYWKTKIEKL 135
GG+D +LLK ++ + L K IEK+
Sbjct: 61 HNGGLDPFLLKASDAQLSSR-ALKLKRAIEKV 91
>sp|Q11DS9|RL28_MESSB 50S ribosomal protein L28 OS=Mesorhizobium sp. (strain BNC1)
GN=rpmB PE=3 SV=1
Length = 98
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK + GN VS NKTRR + PN+ + L S + + R++V+ +ALR ++ GG+
Sbjct: 7 LTGKAVMSGNNVSH-ANNKTRRRFLPNLCDVTLMSEALGQSYRLRVSANALRSVEHRGGL 65
Query: 109 DEYLLKTPYHKMDTEMGLYWKTKIEKLYEE 138
D +LLK +++ L K +KL E+
Sbjct: 66 DAFLLKAKSNELSQRARLLKKQVAKKLTEQ 95
>sp|Q98FZ7|RL28_RHILO 50S ribosomal protein L28 OS=Rhizobium loti (strain MAFF303099)
GN=rpmB PE=3 SV=1
Length = 98
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
K +Q GN VS NKT+R + PN+ L S +++++R++++ +ALR ++ GG+
Sbjct: 7 LTAKAVQTGNNVSH-ANNKTKRRFLPNLVNVTLISEALNQNVRLRISANALRSVEHRGGL 65
Query: 109 DEYLLKTPYHKMDTEMGLYWKTKIEKLYEELG 140
D +L K ++ L K +KL E++
Sbjct: 66 DAFLAKADVKELSQRARLLKKQIAKKLAEQVA 97
>sp|Q5HAZ6|RL28_EHRRW 50S ribosomal protein L28 OS=Ehrlichia ruminantium (strain
Welgevonden) GN=rpmB PE=3 SV=1
Length = 100
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
G+ FGN+VS KT+R + N+ LFS +++R R K+++ LR ID GG+
Sbjct: 7 ITGQTKSFGNKVSH-SNRKTKRTYLVNLHNVTLFSDVLNRKFRFKISSRTLRTIDYKGGL 65
Query: 109 DEYLLKTPYHKM 120
D YLL+T K+
Sbjct: 66 DLYLLETSSRKL 77
>sp|Q1GPG7|RL28_SPHAL 50S ribosomal protein L28 OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=rpmB PE=3 SV=1
Length = 97
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK Q G+ VS NKT+R + PN+Q L S + + ++++V+TH LR ++ GG+
Sbjct: 7 LTGKGRQIGHNVSH-ANNKTKRTFLPNLQNVTLLSDALGKSVKLRVSTHGLRSVEHNGGL 65
Query: 109 DEYLLKT 115
D +L+KT
Sbjct: 66 DNWLMKT 72
>sp|A6WXD5|RL28_OCHA4 50S ribosomal protein L28 OS=Ochrobactrum anthropi (strain ATCC
49188 / DSM 6882 / NCTC 12168) GN=rpmB PE=3 SV=1
Length = 99
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q+GN VS NKTRR + PN+ L S + + R++V+ +ALR ++ GG+
Sbjct: 7 LTGKSVQYGNNVSH-ANNKTRRRFLPNLCNVTLMSETLGQSYRLRVSANALRSVEHRGGL 65
Query: 109 DEYLLKT 115
D +L+K+
Sbjct: 66 DAFLVKS 72
>sp|A5V8R9|RL28_SPHWW 50S ribosomal protein L28 OS=Sphingomonas wittichii (strain RW1 /
DSM 6014 / JCM 10273) GN=rpmB PE=3 SV=1
Length = 97
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK Q G+ VS NKT+R + PN+Q L S + + ++++V+TH LR ++ GG+
Sbjct: 7 LTGKGRQVGHNVSH-ANNKTKRTFLPNLQNVTLISDSLGKGVKLRVSTHGLRSVEHVGGL 65
Query: 109 DEYLLKTP 116
D +LLKT
Sbjct: 66 DNWLLKTS 73
>sp|Q6FYG6|RL28_BARQU 50S ribosomal protein L28 OS=Bartonella quintana (strain Toulouse)
GN=rpmB PE=3 SV=1
Length = 97
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q+GN VS NKTRR + PN+ L S ++ + R++V+ ALR ++ GG+
Sbjct: 7 LTGKTVQYGNNVSH-ANNKTRRRFLPNLCNVTLISEVLQQSYRLRVSASALRSVEHRGGL 65
Query: 109 DEYLLKTPYHKMDTEMGLYWKTKIEKLYEE 138
D +L++ ++ L + ++K E+
Sbjct: 66 DSFLVRADDKELSQRARLLKRQIVKKKAEQ 95
>sp|A1UR12|RL28_BARBK 50S ribosomal protein L28 OS=Bartonella bacilliformis (strain ATCC
35685 / KC583) GN=rpmB PE=3 SV=1
Length = 98
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q+GN VS NKTRR + PN+ L S +M + R++++ +A+R ++ GG+
Sbjct: 7 LTGKTVQYGNNVSH-ANNKTRRRFLPNLCNVTLISEVMQQSYRLRISANAVRSVEHRGGL 65
Query: 109 DEYLLKTPYHKMDTEMGLYWKTKIEKLYEE 138
D +L K ++ L + ++K E+
Sbjct: 66 DNFLTKADDKELSQRARLLKRQIVKKKAEQ 95
>sp|A5G211|RL28_ACICJ 50S ribosomal protein L28 OS=Acidiphilium cryptum (strain JF-5)
GN=rpmB PE=3 SV=1
Length = 100
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 45 KRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDK 104
+R GK + GN VS NK+RR + PN+Q+ L S + ++++VT L I++
Sbjct: 3 RRCDITGKSVLSGNNVSH-ANNKSRRRFLPNLQDSALQSDALGHSVKLRVTPRGLATIEQ 61
Query: 105 AGGIDEYLLKTPYHKMDTE 123
GG+D +LL TP K+ E
Sbjct: 62 KGGLDAFLLDTPNRKLTDE 80
>sp|Q6G5T1|RL28_BARHE 50S ribosomal protein L28 OS=Bartonella henselae (strain ATCC 49882
/ Houston 1) GN=rpmB PE=3 SV=1
Length = 97
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q+GN VS NKTRR + PN+ L S ++ + R++V+ ALR ++ GG+
Sbjct: 7 LTGKTVQYGNNVSH-ANNKTRRRFLPNLCNVTLISEVLQQSYRLRVSASALRSVEHRGGL 65
Query: 109 DEYLLK 114
D +L+K
Sbjct: 66 DGFLVK 71
>sp|Q5FFP1|RL28_EHRRG 50S ribosomal protein L28 OS=Ehrlichia ruminantium (strain Gardel)
GN=rpmB PE=3 SV=1
Length = 100
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 50 AGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGID 109
G+ FGN+VS KT+R + N+ LFS +++R R K+++ LR ID GG D
Sbjct: 8 TGQTKSFGNKVSH-SNRKTKRTYLVNLHNVTLFSDVLNRKFRFKISSRTLRTIDYKGGFD 66
Query: 110 EYLLKTPYHKM 120
YLL+T K+
Sbjct: 67 LYLLETSSRKL 77
>sp|Q2GKY5|RL28_ANAPZ 50S ribosomal protein L28 OS=Anaplasma phagocytophilum (strain HZ)
GN=rpmB PE=3 SV=1
Length = 103
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
G FGN+VS KT+R++ N+ L S ++ R RVKV + LR ID GG+
Sbjct: 7 ITGASKSFGNKVSHSN-RKTKRSYLVNLHNVTLVSEVLGRKFRVKVASRTLRTIDYKGGL 65
Query: 109 DEYLLKTPYHKMDTEMGLYWKTKIE 133
D YLL T K+ TE+ K KI+
Sbjct: 66 DLYLLNTSSRKL-TEVARKIKRKIK 89
>sp|Q9D1B9|RM28_MOUSE 39S ribosomal protein L28, mitochondrial OS=Mus musculus GN=Mrpl28
PE=2 SV=3
Length = 257
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 44 AKRGLFAGKHIQFGNRVSEDG--GNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRC 101
+++GL+ G+ + G R + + + ++ WKP + + L+S I+D+ V VT L
Sbjct: 75 SQQGLWGGEGLILGYRYANNDKLSKRVKKVWKPQLFTRELYSEILDKKFTVTVTMRTLDL 134
Query: 102 IDKAGGIDEYLLKTPYHKMDTEMGL 126
ID+A G D Y+LKTP + ++ G+
Sbjct: 135 IDEAYGFDFYILKTPKEDLGSKFGM 159
>sp|Q2GBV3|RL28_NOVAD 50S ribosomal protein L28 OS=Novosphingobium aromaticivorans
(strain DSM 12444) GN=rpmB PE=3 SV=1
Length = 94
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK Q G+ VS NKT+R + PN+Q L S +DR + +V+TH LR ++ GG+
Sbjct: 7 LTGKGRQVGHNVSH-ANNKTKRLFLPNLQNVTLLSEKLDRSFKFRVSTHGLRSVEHNGGL 65
Query: 109 DEYLLKTPYHKMD 121
D +LLK K+
Sbjct: 66 DNWLLKQSDTKLS 78
>sp|Q13084|RM28_HUMAN 39S ribosomal protein L28, mitochondrial OS=Homo sapiens GN=MRPL28
PE=1 SV=4
Length = 256
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 34 VPDSRIVMNRAKRGLFAGKHIQFGNRVSEDG--GNKTRRNWKPNVQEKRLFSYIMDRHIR 91
VP ++RGL+ G+ G + + + ++ WKP + E+ +S I+D+
Sbjct: 65 VPIPIYFPPESQRGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFT 124
Query: 92 VKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGL 126
V VT L ID+A G+D Y+LKTP + ++ G+
Sbjct: 125 VTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGM 159
>sp|A8LHY2|RL28_DINSH 50S ribosomal protein L28 OS=Dinoroseobacter shibae (strain DFL 12)
GN=rpmB PE=3 SV=1
Length = 95
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 44 AKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCID 103
++R GK +Q GN VS NKT+R + PN+ + L S + R +++++ ALR +D
Sbjct: 2 SRRCELTGKGVQVGNNVSH-ANNKTKRRFLPNLNDVTLMSETLGRGFKLRISAAALRTVD 60
Query: 104 KAGGIDEYLLKTPYHKMDTEMGLYWKTKIEK 134
GG+D +L K ++ +E L K I K
Sbjct: 61 HRGGLDSFLAKAKDAEL-SEKALKIKKDIAK 90
>sp|Q2N6R1|RL28_ERYLH 50S ribosomal protein L28 OS=Erythrobacter litoralis (strain
HTCC2594) GN=rpmB PE=3 SV=1
Length = 99
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK Q G+ VS NKT+R + PN+Q L S +DR + +V+T LR ++ GG+
Sbjct: 7 LTGKGRQVGHNVSH-ANNKTKRVFLPNLQNVTLLSEKLDRGFKFRVSTQGLRSVEHNGGL 65
Query: 109 DEYLLKTPYHKMDTE 123
D +LLKT K+ +
Sbjct: 66 DNWLLKTKDDKLSSN 80
>sp|B2FNE3|RL28_STRMK 50S ribosomal protein L28 OS=Stenotrophomonas maltophilia (strain
K279a) GN=rpmB PE=3 SV=1
Length = 78
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 50 AGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGID 109
+GK +Q GN VS NKTRR + PN+ E+R + +R ++++V+ HALR IDK GID
Sbjct: 8 SGKRVQTGNNVSH-ANNKTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDK-NGID 65
Query: 110 EYL 112
L
Sbjct: 66 SVL 68
>sp|B4SNN0|RL28_STRM5 50S ribosomal protein L28 OS=Stenotrophomonas maltophilia (strain
R551-3) GN=rpmB PE=3 SV=1
Length = 78
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 50 AGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGID 109
+GK +Q GN VS NKTRR + PN+ E+R + +R ++++V+ HALR IDK GID
Sbjct: 8 SGKRVQTGNNVSH-ANNKTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDK-NGID 65
Query: 110 EYL 112
L
Sbjct: 66 SVL 68
>sp|P66141|RL28_BRUSU 50S ribosomal protein L28 OS=Brucella suis biovar 1 (strain 1330)
GN=rpmB PE=3 SV=1
Length = 97
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q+GN VS N+TRR + PN+ L S + + R++++ +ALR ++ GG+
Sbjct: 7 LTGKSVQYGNNVSH-ANNRTRRRFLPNLCNVTLISETLGQSYRLRISANALRSVEHRGGL 65
Query: 109 DEYLLKT 115
D +L+K+
Sbjct: 66 DAFLVKS 72
>sp|B0CJB7|RL28_BRUSI 50S ribosomal protein L28 OS=Brucella suis (strain ATCC 23445 /
NCTC 10510) GN=rpmB PE=3 SV=1
Length = 97
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q+GN VS N+TRR + PN+ L S + + R++++ +ALR ++ GG+
Sbjct: 7 LTGKSVQYGNNVSH-ANNRTRRRFLPNLCNVTLISETLGQSYRLRISANALRSVEHRGGL 65
Query: 109 DEYLLKT 115
D +L+K+
Sbjct: 66 DAFLVKS 72
>sp|P66140|RL28_BRUME 50S ribosomal protein L28 OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rpmB PE=3 SV=1
Length = 97
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q+GN VS N+TRR + PN+ L S + + R++++ +ALR ++ GG+
Sbjct: 7 LTGKSVQYGNNVSH-ANNRTRRRFLPNLCNVTLISETLGQSYRLRISANALRSVEHRGGL 65
Query: 109 DEYLLKT 115
D +L+K+
Sbjct: 66 DAFLVKS 72
>sp|C0RFQ6|RL28_BRUMB 50S ribosomal protein L28 OS=Brucella melitensis biotype 2 (strain
ATCC 23457) GN=rpmB PE=3 SV=1
Length = 97
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q+GN VS N+TRR + PN+ L S + + R++++ +ALR ++ GG+
Sbjct: 7 LTGKSVQYGNNVSH-ANNRTRRRFLPNLCNVTLISETLGQSYRLRISANALRSVEHRGGL 65
Query: 109 DEYLLKT 115
D +L+K+
Sbjct: 66 DAFLVKS 72
>sp|A9M9A0|RL28_BRUC2 50S ribosomal protein L28 OS=Brucella canis (strain ATCC 23365 /
NCTC 10854) GN=rpmB PE=3 SV=1
Length = 97
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q+GN VS N+TRR + PN+ L S + + R++++ +ALR ++ GG+
Sbjct: 7 LTGKSVQYGNNVSH-ANNRTRRRFLPNLCNVTLISETLGQSYRLRISANALRSVEHRGGL 65
Query: 109 DEYLLKT 115
D +L+K+
Sbjct: 66 DAFLVKS 72
>sp|Q57AP2|RL28_BRUAB 50S ribosomal protein L28 OS=Brucella abortus biovar 1 (strain
9-941) GN=rpmB PE=3 SV=1
Length = 97
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q+GN VS N+TRR + PN+ L S + + R++++ +ALR ++ GG+
Sbjct: 7 LTGKSVQYGNNVSH-ANNRTRRRFLPNLCNVTLISETLGQSYRLRISANALRSVEHRGGL 65
Query: 109 DEYLLKT 115
D +L+K+
Sbjct: 66 DAFLVKS 72
>sp|Q2YR56|RL28_BRUA2 50S ribosomal protein L28 OS=Brucella abortus (strain 2308) GN=rpmB
PE=3 SV=1
Length = 97
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q+GN VS N+TRR + PN+ L S + + R++++ +ALR ++ GG+
Sbjct: 7 LTGKSVQYGNNVSH-ANNRTRRRFLPNLCNVTLISETLGQSYRLRISANALRSVEHRGGL 65
Query: 109 DEYLLKT 115
D +L+K+
Sbjct: 66 DAFLVKS 72
>sp|B2S8R7|RL28_BRUA1 50S ribosomal protein L28 OS=Brucella abortus (strain S19) GN=rpmB
PE=3 SV=1
Length = 97
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q+GN VS N+TRR + PN+ L S + + R++++ +ALR ++ GG+
Sbjct: 7 LTGKSVQYGNNVSH-ANNRTRRRFLPNLCNVTLISETLGQSYRLRISANALRSVEHRGGL 65
Query: 109 DEYLLKT 115
D +L+K+
Sbjct: 66 DAFLVKS 72
>sp|Q92MF4|RL28_RHIME 50S ribosomal protein L28 OS=Rhizobium meliloti (strain 1021)
GN=rpmB PE=3 SV=1
Length = 96
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q GN VS NKT+R + PN+ L S + + R++V+ ALR ++ GG+
Sbjct: 7 LTGKGVQSGNNVSH-ANNKTKRKFLPNLCNVTLISDALGQRFRLRVSAAALRSVEHRGGL 65
Query: 109 DEYLLKTPYHKMDTEMGLYWKTKIEKLYE 137
D +LLK +++ L + ++K E
Sbjct: 66 DAFLLKADENELSMRARLLRRQIVKKAAE 94
>sp|Q68EV6|RM28_XENLA 39S ribosomal protein L28, mitochondrial OS=Xenopus laevis
GN=mrpl28 PE=2 SV=1
Length = 253
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 34 VPDSRIVMNRAKRGLFAGKHIQFGNRVSEDG--GNKTRRNWKPNVQEKRLFSYIMDRHIR 91
VP +A +GL+ G+ G + + + ++ WKP + ++ L+S I+D+
Sbjct: 65 VPILPYFPPQANKGLWGGEGWVTGYHYANNDKLSARVKKVWKPQLFKRELYSEILDKKFS 124
Query: 92 VKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGL 126
+ VT L ID A G D Y+LKTP +++++G+
Sbjct: 125 ITVTMRTLDLIDAAYGFDFYILKTPKEDLNSKVGM 159
>sp|Q8U9V8|RL28_AGRT5 50S ribosomal protein L28 OS=Agrobacterium tumefaciens (strain C58
/ ATCC 33970) GN=rpmB PE=3 SV=1
Length = 96
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q GN VS NKT+R + PN+ + L S + + R++V+ ALR ++ GG+
Sbjct: 7 LTGKGVQTGNNVSH-ANNKTKRRFLPNLCQVTLISDALGQRFRLRVSAAALRSVEHRGGL 65
Query: 109 DEYLLKTPYHKMDTEMGLYWKTKIEKLYE 137
D +LLK+ +++ L + +K E
Sbjct: 66 DAFLLKSGENELSMRARLLRRQIAKKTAE 94
>sp|B3PPE3|RL28_RHIE6 50S ribosomal protein L28 OS=Rhizobium etli (strain CIAT 652)
GN=rpmB PE=3 SV=1
Length = 99
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK + GN VS NKT+R + PN+ + L S +++ R++V+ ALR ++ GG+
Sbjct: 7 LTGKAVLTGNNVSH-ANNKTKRRFLPNLCQVTLISDALNQRYRLRVSAAALRSVEHRGGL 65
Query: 109 DEYLLKTPYHKMDTEMGLYWKTKIEKLYE 137
D +LLK +++ L + ++K E
Sbjct: 66 DAFLLKASENELSMRARLLRRQIVKKTAE 94
>sp|Q2NXC7|RL28_XANOM 50S ribosomal protein L28 OS=Xanthomonas oryzae pv. oryzae (strain
MAFF 311018) GN=rpmB PE=3 SV=1
Length = 78
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 50 AGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGID 109
+GK +Q GN VS N+TRR + PN+ E+R + +R ++++V+ HALR IDK GID
Sbjct: 8 SGKRVQTGNNVSH-ANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDK-NGID 65
Query: 110 EYL 112
L
Sbjct: 66 AVL 68
>sp|P66161|RL28_XANCP 50S ribosomal protein L28 OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=rpmB PE=3
SV=1
Length = 78
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 50 AGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGID 109
+GK +Q GN VS N+TRR + PN+ E+R + +R ++++V+ HALR IDK GID
Sbjct: 8 SGKRVQTGNNVSH-ANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDK-NGID 65
Query: 110 EYL 112
L
Sbjct: 66 AVL 68
>sp|B0RYR3|RL28_XANCB 50S ribosomal protein L28 OS=Xanthomonas campestris pv. campestris
(strain B100) GN=rpmB PE=3 SV=1
Length = 78
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 50 AGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGID 109
+GK +Q GN VS N+TRR + PN+ E+R + +R ++++V+ HALR IDK GID
Sbjct: 8 SGKRVQTGNNVSH-ANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDK-NGID 65
Query: 110 EYL 112
L
Sbjct: 66 AVL 68
>sp|Q4UP61|RL28_XANC8 50S ribosomal protein L28 OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=rpmB PE=3 SV=1
Length = 78
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 50 AGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGID 109
+GK +Q GN VS N+TRR + PN+ E+R + +R ++++V+ HALR IDK GID
Sbjct: 8 SGKRVQTGNNVSH-ANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDK-NGID 65
Query: 110 EYL 112
L
Sbjct: 66 AVL 68
>sp|Q3BMM5|RL28_XANC5 50S ribosomal protein L28 OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=rpmB PE=3 SV=1
Length = 78
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 50 AGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGID 109
+GK +Q GN VS N+TRR + PN+ E+R + +R ++++V+ HALR IDK GID
Sbjct: 8 SGKRVQTGNNVSH-ANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDK-NGID 65
Query: 110 EYL 112
L
Sbjct: 66 AVL 68
>sp|P66160|RL28_XANAC 50S ribosomal protein L28 OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=rpmB PE=3 SV=1
Length = 78
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 50 AGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGID 109
+GK +Q GN VS N+TRR + PN+ E+R + +R ++++V+ HALR IDK GID
Sbjct: 8 SGKRVQTGNNVSH-ANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDK-NGID 65
Query: 110 EYL 112
L
Sbjct: 66 AVL 68
>sp|B9JTL3|RL28_AGRVS 50S ribosomal protein L28 OS=Agrobacterium vitis (strain S4 / ATCC
BAA-846) GN=rpmB PE=3 SV=1
Length = 96
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q GN VS NKTRR + PN+ + L S + + R++V+ ALR ++ GG+
Sbjct: 7 LTGKGVQSGNNVSH-ANNKTRRKFLPNLCDVTLISDALGQRYRLRVSAAALRSVEHRGGL 65
Query: 109 DEYLLKTPYHKMDTEMGLYWKTKIEK 134
D +LLK ++ L + ++K
Sbjct: 66 DAFLLKANETELSMRARLLRRQIVKK 91
>sp|A6UCK6|RL28_SINMW 50S ribosomal protein L28 OS=Sinorhizobium medicae (strain WSM419)
GN=rpmB PE=3 SV=1
Length = 96
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK +Q GN VS NKT+R + PN+ L S + + R++V+ ALR ++ GG+
Sbjct: 7 LTGKGVQSGNNVSH-ANNKTKRKFLPNLCNVTLISDALGQRFRLRVSAAALRSVEHRGGL 65
Query: 109 DEYLLKTPYHKMDTEMGLYWKTKIEKLYE 137
D +LLK ++ L + ++K E
Sbjct: 66 DAFLLKADETELSMRARLLRRQIVKKAAE 94
>sp|B5ZRX6|RL28_RHILW 50S ribosomal protein L28 OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=rpmB PE=3 SV=1
Length = 99
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK + GN VS NKT+R + PN+ + L S +++ R++V+ ALR ++ GG+
Sbjct: 7 LTGKAVLTGNNVSH-ANNKTKRRFLPNLCQVTLISDALNQRYRLRVSAAALRSVEHRGGL 65
Query: 109 DEYLLKTPYHKMDTEMGLYWKTKIEKLYE 137
D +LLK ++ L + ++K E
Sbjct: 66 DAFLLKASETELSMRARLLRRQIVKKTAE 94
>sp|Q2K3M2|RL28_RHIEC 50S ribosomal protein L28 OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=rpmB PE=3 SV=1
Length = 98
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 49 FAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGI 108
GK + GN VS NKT+R + PN+ + L S +++ R++V+ ALR ++ GG+
Sbjct: 7 LTGKAVLTGNNVSH-ANNKTKRRFLPNLCQVTLISDALNQRYRLRVSAAALRSVEHRGGL 65
Query: 109 DEYLLKTPYHKMDTEMGLYWKTKIEKLYE 137
D +L+K +++ L + ++K E
Sbjct: 66 DAFLIKASENELSMRARLLRRQIVKKTAE 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,176,065
Number of Sequences: 539616
Number of extensions: 3356807
Number of successful extensions: 12828
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 12406
Number of HSP's gapped (non-prelim): 519
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)