Query 039022
Match_columns 222
No_of_seqs 200 out of 1031
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3278 Mitochondrial/chloropl 100.0 3.9E-43 8.4E-48 300.9 8.0 187 1-188 1-190 (215)
2 PRK00359 rpmB 50S ribosomal pr 99.9 4.7E-28 1E-32 181.6 5.1 75 43-119 1-75 (76)
3 COG0227 RpmB Ribosomal protein 99.9 7.7E-28 1.7E-32 181.4 5.3 73 43-116 1-73 (77)
4 PF00830 Ribosomal_L28: Riboso 99.9 5E-25 1.1E-29 158.7 3.6 61 45-106 1-61 (61)
5 CHL00112 rpl28 ribosomal prote 99.9 6.4E-24 1.4E-28 154.6 4.9 62 43-105 1-62 (63)
6 KOG3279 Uncharacterized conser 99.9 4E-24 8.7E-29 188.4 3.0 155 31-191 69-226 (283)
7 TIGR00009 L28 ribosomal protei 99.9 3.1E-22 6.8E-27 142.3 4.6 56 43-101 1-56 (56)
8 KOG4675 Uncharacterized conser 54.9 21 0.00046 33.2 4.6 70 132-201 17-89 (273)
9 PF03735 ENT: ENT domain; Int 53.7 39 0.00085 25.4 5.1 43 135-177 13-56 (73)
10 COG0484 DnaJ DnaJ-class molecu 50.3 20 0.00043 34.6 3.8 55 130-185 19-73 (371)
11 PRK14282 chaperone protein Dna 47.3 22 0.00048 33.3 3.6 55 130-184 19-73 (369)
12 KOG0718 Molecular chaperone (D 41.1 54 0.0012 33.2 5.3 61 130-190 24-86 (546)
13 cd02432 Nodulin-21_like_1 Nodu 37.3 65 0.0014 28.4 4.8 37 141-177 77-113 (218)
14 KOG3279 Uncharacterized conser 36.9 18 0.0004 33.1 1.3 17 140-156 192-208 (283)
15 PRK14290 chaperone protein Dna 35.1 45 0.00097 31.3 3.6 55 130-184 18-72 (365)
16 cd02433 Nodulin-21_like_2 Nodu 33.9 1.1E+02 0.0023 27.5 5.6 35 142-176 90-124 (234)
17 PRK14278 chaperone protein Dna 31.9 58 0.0013 30.8 3.8 52 130-183 18-69 (378)
18 PF00226 DnaJ: DnaJ domain; I 29.9 89 0.0019 21.2 3.6 27 153-179 38-64 (64)
19 PF13348 Y_phosphatase3C: Tyro 28.6 43 0.00093 23.5 1.8 19 97-115 33-52 (68)
20 COG5457 Uncharacterized conser 27.5 67 0.0015 23.7 2.7 21 157-177 41-61 (63)
21 PF06881 Elongin_A: RNA polyme 27.0 1.8E+02 0.0039 22.6 5.3 56 118-177 32-87 (109)
22 PRK14288 chaperone protein Dna 26.3 69 0.0015 30.2 3.3 53 130-183 18-70 (369)
23 cd02435 CCC1 CCC1. CCC1: This 26.2 1.7E+02 0.0037 26.2 5.6 37 141-177 90-127 (241)
24 PF10985 DUF2805: Protein of u 25.4 53 0.0011 25.1 1.9 28 150-177 10-37 (73)
25 KOG0712 Molecular chaperone (D 23.9 90 0.002 29.8 3.6 55 130-188 19-73 (337)
26 PRK03976 rpl37ae 50S ribosomal 23.6 13 0.00027 29.4 -1.8 42 14-55 6-47 (90)
27 PRK03573 transcriptional regul 22.8 2.4E+02 0.0052 22.1 5.3 63 95-162 63-133 (144)
28 KOG2555 AICAR transformylase/I 22.3 66 0.0014 32.4 2.4 61 98-169 477-537 (588)
29 TIGR03643 conserved hypothetic 21.9 67 0.0015 24.5 1.9 28 150-177 11-38 (72)
30 PTZ00255 60S ribosomal protein 21.2 29 0.00063 27.3 -0.2 42 14-55 6-47 (90)
31 TIGR00280 L37a ribosomal prote 20.7 30 0.00065 27.3 -0.2 42 14-55 5-46 (91)
32 PRK07758 hypothetical protein; 20.6 62 0.0013 25.8 1.5 53 91-165 39-93 (95)
33 PRK14286 chaperone protein Dna 20.3 1.1E+02 0.0025 28.7 3.5 53 131-184 20-72 (372)
No 1
>KOG3278 consensus Mitochondrial/chloroplast ribosomal protein L28 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-43 Score=300.91 Aligned_cols=187 Identities=63% Similarity=0.963 Sum_probs=170.2
Q ss_pred CccchHHHHHHHHHHhcCCCCCCchhhhhhhhcCCCchhhhhccccccccCceeeecccccCCCCCcccceeccceeEEE
Q 039022 1 MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKR 80 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~P~~~~v~krSr~Cl~~GK~~~~GN~VSh~S~~KTrR~WkPNLqkkr 80 (222)
||||++|||+|++++++ ..+++|+..+.++-|+|+...+|+|+++|+|+|..+++|||++..+.+||||.|.||+|.++
T Consensus 1 ~~~r~~~m~~kl~~k~a-~p~~~P~~~~k~k~~vyd~~~vf~q~~~gLYgGs~iq~GNn~i~~~g~KTRr~W~PNv~~K~ 79 (215)
T KOG3278|consen 1 MAFRGKEMMKKLVKKVA-APNITPELKEKLKACVYDTKVVFGQAKRGLYGGSHIQYGNNVIEDGGNKTRRCWKPNVQEKR 79 (215)
T ss_pred CcchHHHHHHHHHHhhc-ccccCHHHHhhccccccChHHHHhhcccccccccceecCcccccccCcccceeecCcchhhH
Confidence 89999999999999998 44467888888888888888999999999999999999999766699999999999999999
Q ss_pred EEEccCCeEEEEEeehhHHhhHhhcCChhHHhhcCCCCCCC--HHHhHHHHHHHHHHHH-HhcccccccCChHHHHHHHH
Q 039022 81 LFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD--TEMGLYWKTKIEKLYE-ELGQTEVAFFTPEEEAKLEQ 157 (222)
Q Consensus 81 l~SeiLgr~irVkVTTraLRTIdK~GGlD~YLLkt~~~~L~--selG~~lK~~I~~~y~-~l~~ke~~~~~pe~ea~~~e 157 (222)
|||++|++.|.|+|||++||||||.||||+||++++++++. .++|.+||.+++..|+ +..+++..+++|+.+++.+|
T Consensus 80 L~S~il~~ki~vkvTt~vLrtIdKeGGiDeYL~K~~sar~K~lg~~G~~lr~~Vl~r~~ienp~~e~ap~~~~a~~k~~~ 159 (215)
T KOG3278|consen 80 LFSYILDSKIKVKVTTHVLRTIDKEGGIDEYLLKTPSARQKMLGEMGLYLRTKVLARYAIENPQMEVAPFNPEAEAKLEQ 159 (215)
T ss_pred HHHHHHhhheeeeeehHHHhhhccccChhHHHhcCcHHHHhhcccchHHHHHHHHHHhhccCCcccccCCCchhHHHHHH
Confidence 99999999999999999999999999999999999987764 3556689999999999 88999999999999999999
Q ss_pred HHhhhcccHHHHHHHHHHHHhcCCcchhhhh
Q 039022 158 DFKDMKLAQRAARRELRRQMYGGSSKQKQIE 188 (222)
Q Consensus 158 ~~k~~~i~~~~a~~~~~~~~~~~~~~~~~~~ 188 (222)
.|+++.|....++++.||++-...+..+..|
T Consensus 160 ~~kD~~i~~~~~k~~~rr~~~s~~g~~~~~e 190 (215)
T KOG3278|consen 160 GFKDLNIAKKDAKREARRTFRSKGGGNKGDE 190 (215)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHcCCcccch
Confidence 9999999999999999999866666554443
No 2
>PRK00359 rpmB 50S ribosomal protein L28; Reviewed
Probab=99.94 E-value=4.7e-28 Score=181.56 Aligned_cols=75 Identities=36% Similarity=0.515 Sum_probs=70.9
Q ss_pred ccccccccCceeeecccccCCCCCcccceeccceeEEEEEEccCCeEEEEEeehhHHhhHhhcCChhHHhhcCCCCC
Q 039022 43 RAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHK 119 (222)
Q Consensus 43 rSr~Cl~~GK~~~~GN~VSh~S~~KTrR~WkPNLqkkrl~SeiLgr~irVkVTTraLRTIdK~GGlD~YLLkt~~~~ 119 (222)
||++|++|||++++||+||| |+++|+|+|+||||++++||+++|++++|+|||+|||||+|.| +|+||+.+....
T Consensus 1 Msr~C~i~GK~~~~Gn~vSh-s~~kTkR~~~pNlq~~~~~~~~~g~~v~~~vst~~Lrti~k~G-l~~~~~~~~~~~ 75 (76)
T PRK00359 1 MSRVCEITGKGPMVGNNVSH-SNNKTKRRFLPNLQKVRFWVEEEGRFVRLRVSARALRTIDKKG-LDAVLKKARARG 75 (76)
T ss_pred CCCccccCCCCCccCCeeee-cCCccCceecccceEEEEEEccCCEEEEEEEEchheeeehhhh-HHHHHHhhhhcc
Confidence 57899999999999999999 8999999999999999999999999999999999999999995 999999876543
No 3
>COG0227 RpmB Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=7.7e-28 Score=181.37 Aligned_cols=73 Identities=41% Similarity=0.567 Sum_probs=70.7
Q ss_pred ccccccccCceeeecccccCCCCCcccceeccceeEEEEEEccCCeEEEEEeehhHHhhHhhcCChhHHhhcCC
Q 039022 43 RAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTP 116 (222)
Q Consensus 43 rSr~Cl~~GK~~~~GN~VSh~S~~KTrR~WkPNLqkkrl~SeiLgr~irVkVTTraLRTIdK~GGlD~YLLkt~ 116 (222)
||++|++||+++++||+||| |+++|+|+|.||||++++|++.+|++++|+|||+|||+||+.||+|+|+.+..
T Consensus 1 Msr~C~lTGk~~~~GnnvSh-s~~kTkRr~~pNlq~~~~~~~~~g~~~~l~Vsa~~Lrtidk~G~~~~~~~~~~ 73 (77)
T COG0227 1 MSRRCQLTGKGPMSGNNVSH-SHNKTKRRFLPNLQKVRFWSLSDGRFKRLRVSAKALRTIDKKGKIDAVLAKAR 73 (77)
T ss_pred CCceeeeccccccccccccc-cccccceeecCccEEEEEEEccCCcEEEEEEEhHHhhccccccchhhhhhhhc
Confidence 57899999999999999999 89999999999999999999999999999999999999999999999998865
No 4
>PF00830 Ribosomal_L28: Ribosomal L28 family; InterPro: IPR001383 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L28 protein family include proteins from bacteria and chloroplasts. The L24 protein from yeast, found in the large subunit of the mitochodrial ribosome, contains a region similar to the bacterial L28 protein.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZJP_U 3CF5_U 2ZJR_U 3PIP_U 3PIO_U 2ZJQ_U 3DLL_U 2Y15_1 3KIY_1 3V2D_1 ....
Probab=99.91 E-value=5e-25 Score=158.70 Aligned_cols=61 Identities=57% Similarity=0.932 Sum_probs=57.0
Q ss_pred ccccccCceeeecccccCCCCCcccceeccceeEEEEEEccCCeEEEEEeehhHHhhHhhcC
Q 039022 45 KRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAG 106 (222)
Q Consensus 45 r~Cl~~GK~~~~GN~VSh~S~~KTrR~WkPNLqkkrl~SeiLgr~irVkVTTraLRTIdK~G 106 (222)
++|+||||++++||+||| |+++|+|+|+||||++++||++||++++|+|||+|||+|+|.|
T Consensus 1 r~c~~~GK~~~~Gn~vsh-s~~ktkR~~~pNlq~~~~~~~~lg~~~~v~vst~~Lrti~k~G 61 (61)
T PF00830_consen 1 RRCLITGKKPMFGNNVSH-SNNKTKRRWKPNLQKKRLWSEILGKKIRVRVSTRALRTIDKKG 61 (61)
T ss_dssp -S-TTT-CTTCEECEEEE-ECEEEEEEEBTTEEEEEEEESTTSSEEEEEEEHCHHHHHHCHT
T ss_pred CEeecCCCeecccceEee-cCCcCCcEEcCcCEEEEEEEcCCCeEEEEEEEhHHeeeeccCC
Confidence 489999999999999999 8999999999999999999999999999999999999999986
No 5
>CHL00112 rpl28 ribosomal protein L28; Provisional
Probab=99.89 E-value=6.4e-24 Score=154.61 Aligned_cols=62 Identities=27% Similarity=0.466 Sum_probs=59.7
Q ss_pred ccccccccCceeeecccccCCCCCcccceeccceeEEEEEEccCCeEEEEEeehhHHhhHhhc
Q 039022 43 RAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKA 105 (222)
Q Consensus 43 rSr~Cl~~GK~~~~GN~VSh~S~~KTrR~WkPNLqkkrl~SeiLgr~irVkVTTraLRTIdK~ 105 (222)
||++|++|||++++||+||| |+++|+|+|+||||++++|++.++++++|+|||+|||+|+|.
T Consensus 1 Msr~C~i~GK~~~~Gn~vSH-s~~kTkR~f~pNLq~vr~~~~~~~~~~kl~Vstr~Lrt~~k~ 62 (63)
T CHL00112 1 MSKKCQLTGKKANNGYTVSH-SHKRTKKLQKVNLQTKKIWSNTQNRWVKLKISTKAIKTLKKK 62 (63)
T ss_pred CCCeeccCCCcCccCceeEc-cCcccCceecccccEEEEEECCCCeEEEEEEEHHHhhhcccc
Confidence 57899999999999999999 899999999999999999999999999999999999999985
No 6
>KOG3279 consensus Uncharacterized conserved protein (melanoma antigen P15) [Function unknown]
Probab=99.89 E-value=4e-24 Score=188.45 Aligned_cols=155 Identities=23% Similarity=0.370 Sum_probs=131.5
Q ss_pred hhcCCCchhhhhccccccccCceeeecccccCCCCCcccceeccceeEEEEEEccCCeEEEEEeehhHHhhHhhcCChhH
Q 039022 31 KKCVPDSRIVMNRAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDE 110 (222)
Q Consensus 31 ~~~~P~~~~v~krSr~Cl~~GK~~~~GN~VSh~S~~KTrR~WkPNLqkkrl~SeiLgr~irVkVTTraLRTIdK~GGlD~ 110 (222)
..++|..-|..+++++|+|+|+.++.|..-|...++|..|.|.|||.++.++|++|+.+++|.||.|+|+.||.+.|||.
T Consensus 69 ~~~~p~~~i~tpe~~~g~wgge~vikg~~~~~~tk~~~p~~wvp~l~~~v~~s~ild~y~~v~vteRtl~LIDE~~GLD~ 148 (283)
T KOG3279|consen 69 VQNIPLPLIDTPESHRGIWGGEAVIKGFQKREQTKRRVPHFWVPNLRRSVVHSHVLDCYMSVVVTERTLELIDECHGLDH 148 (283)
T ss_pred hhcCCcccccCCcccccccccHHHHHHHHHHHHHhhcCCcccccchhhHHHHHHHHhhhheeeehHHHHHHHHHhcCcce
Confidence 45678888999999999999999999999888556789999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCHHHhHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHHHH---HHHHHHhcCCcchhhh
Q 039022 111 YLLKTPYHKMDTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARR---ELRRQMYGGSSKQKQI 187 (222)
Q Consensus 111 YLLkt~~~~L~selG~~lK~~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~---~~~~~~~~~~~~~~~~ 187 (222)
|||+++..+|+|++|+.|||.|+.....-.. .....||.+|.+.+.|++|.|+++||+= ++-.++ -||+++
T Consensus 149 YILk~~~~DL~SKFa~~LKReMLL~L~~~~p--~~~E~pEr~A~I~~KY~~F~IPEeEAEW~GLtL~EAi----rKQ~~l 222 (283)
T KOG3279|consen 149 YILKNRACDLRSKFALKLKREMLLALQNGVP--ALAEEPERQAEILKKYRRFLIPEEEAEWYGLTLLEAI----RKQKQL 222 (283)
T ss_pred eeecCcchhHHHHHHHHHHHHHHHHHhcCCC--cccCChHHHHHHHHHHHHhcCCHHHhhHhhhHHHHHH----HHHHHH
Confidence 9999999999999999999999876654433 2335588888888999999999888862 222233 566677
Q ss_pred hcCC
Q 039022 188 EQGS 191 (222)
Q Consensus 188 ~~~~ 191 (222)
|+..
T Consensus 223 Ee~~ 226 (283)
T KOG3279|consen 223 EEAE 226 (283)
T ss_pred Hhcc
Confidence 6543
No 7
>TIGR00009 L28 ribosomal protein L28. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture and are not included.
Probab=99.86 E-value=3.1e-22 Score=142.31 Aligned_cols=56 Identities=36% Similarity=0.564 Sum_probs=53.7
Q ss_pred ccccccccCceeeecccccCCCCCcccceeccceeEEEEEEccCCeEEEEEeehhHHhh
Q 039022 43 RAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRC 101 (222)
Q Consensus 43 rSr~Cl~~GK~~~~GN~VSh~S~~KTrR~WkPNLqkkrl~SeiLgr~irVkVTTraLRT 101 (222)
||++|++|||++++||+||| |+++|+|+|+||||++++|++ |++++|+|||+|||+
T Consensus 1 Ms~~C~i~GK~~~~Gn~vsh-s~~ktkR~~~pNlq~~ri~~~--~~~~~~~vst~~Lkt 56 (56)
T TIGR00009 1 MSRKCQLTGKGPLSGNNVSH-SHRKTKRRFKPNLQKKRVWVD--GRFKRLRVSAKCLRT 56 (56)
T ss_pred CCCEeeeCCCcCccCCeeee-cCCccCceecccceEEEEEEC--CEEEEEEEEcHHhcC
Confidence 57899999999999999999 899999999999999999998 799999999999986
No 8
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=54.92 E-value=21 Score=33.23 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=43.9
Q ss_pred HHHHHHHhccccccc--CChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCcchhhh-hcCCCCchhcHHHH
Q 039022 132 IEKLYEELGQTEVAF--FTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGSSKQKQI-EQGSADTQETAEEA 201 (222)
Q Consensus 132 I~~~y~~l~~ke~~~--~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 201 (222)
...++..|..--++- .+=|.+.-+.+-+++|.|+.++.+-++|+..||.+-.+--- --|+...+|..++-
T Consensus 17 ~eaY~~vl~af~aq~d~iS~ek~~~~teLrk~l~Is~eeh~~~~r~~~~d~~~~~i~~n~~~~n~~qe~~~e~ 89 (273)
T KOG4675|consen 17 LEAYASVLRAFKAQGDAISWEKEELLTELRKELNISDEEHRMLVRRAINDDLITRIRENSRGSNKSQEWSGEG 89 (273)
T ss_pred HHHHHHHHHHHHhcCcccchhHHHHHHHHhhhhccCHHHHHHHHHHHhccHHHHHHHHhhcCCCchhhhhhhh
Confidence 334555564444433 33455666667779999999999999999998876543221 22333336665543
No 9
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=53.73 E-value=39 Score=25.42 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=29.6
Q ss_pred HHHHhccccccc-CChHHHHHHHHHHhhhcccHHHHHHHHHHHH
Q 039022 135 LYEELGQTEVAF-FTPEEEAKLEQDFKDMKLAQRAARRELRRQM 177 (222)
Q Consensus 135 ~y~~l~~ke~~~-~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~ 177 (222)
++..+....++- .+++.+.-+.+-.++|+|+.++.+.++|+..
T Consensus 13 Y~svl~Af~Aqg~lsweke~lLt~Lr~~L~IS~e~H~~~l~~~~ 56 (73)
T PF03735_consen 13 YSSVLRAFRAQGPLSWEKEKLLTELRKELNISDEEHREELRRAV 56 (73)
T ss_dssp HHHHHHHHHHHSS--HHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Confidence 344444444444 6778888888888999999999999999876
No 10
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.28 E-value=20 Score=34.59 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCcchh
Q 039022 130 TKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGSSKQK 185 (222)
Q Consensus 130 ~~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~~~~ 185 (222)
.+|.++|+.|..+|---..|. +++-+|.|||..-+=|-.--+-.|++||..+...
T Consensus 19 ~EIKkAYRkLA~kyHPD~n~g-~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~ 73 (371)
T COG0484 19 EEIKKAYRKLAKKYHPDRNPG-DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAG 73 (371)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccc
Confidence 678888999977765444442 3445667777766666667777889999766544
No 11
>PRK14282 chaperone protein DnaJ; Provisional
Probab=47.26 E-value=22 Score=33.33 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCcch
Q 039022 130 TKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGSSKQ 184 (222)
Q Consensus 130 ~~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~~~ 184 (222)
.+|.++|+.|..++---..|.+..+.++.|+++.-+=+-...+.+|++||..+..
T Consensus 19 ~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 19 EEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred HHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 4577778888666554444544344677888877777888888999999976643
No 12
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=41.14 E-value=54 Score=33.16 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcccc--cccCChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCcchhhhhcC
Q 039022 130 TKIEKLYEELGQTE--VAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGSSKQKQIEQG 190 (222)
Q Consensus 130 ~~I~~~y~~l~~ke--~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (222)
.+|.++|+.+-.++ -.+.+|++.+..|+.|....=+-|=.--+-.|++||..+.|.+--+|
T Consensus 24 eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~g 86 (546)
T KOG0718|consen 24 EEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTEG 86 (546)
T ss_pred HHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccccC
Confidence 57778888886654 34677999999999998888888888888899999999999876444
No 13
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=37.28 E-value=65 Score=28.43 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=29.7
Q ss_pred ccccccCChHHHHHHHHHHhhhcccHHHHHHHHHHHH
Q 039022 141 QTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQM 177 (222)
Q Consensus 141 ~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~ 177 (222)
+.+...+|.++.+++.+.|...|+++++++.-+....
T Consensus 77 ~~~i~~~p~~e~~el~~~~~~~G~~~~~a~~~a~~l~ 113 (218)
T cd02432 77 RRELAEDPEAELEELADIYEERGLSPELARQVADELM 113 (218)
T ss_pred HHHHHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 3455667888889999999999999999887777544
No 14
>KOG3279 consensus Uncharacterized conserved protein (melanoma antigen P15) [Function unknown]
Probab=36.94 E-value=18 Score=33.12 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=14.1
Q ss_pred cccccccCChHHHHHHH
Q 039022 140 GQTEVAFFTPEEEAKLE 156 (222)
Q Consensus 140 ~~ke~~~~~pe~ea~~~ 156 (222)
.+||..|.+||+||+|+
T Consensus 192 ~~KY~~F~IPEeEAEW~ 208 (283)
T KOG3279|consen 192 LKKYRRFLIPEEEAEWY 208 (283)
T ss_pred HHHHHHhcCCHHHhhHh
Confidence 44556899999999997
No 15
>PRK14290 chaperone protein DnaJ; Provisional
Probab=35.14 E-value=45 Score=31.26 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCcch
Q 039022 130 TKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGSSKQ 184 (222)
Q Consensus 130 ~~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~~~ 184 (222)
.+|.++|+.|..++---..|.+.+..++.|+++.-+=+....+.+|++||..+..
T Consensus 18 ~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 18 EDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred HHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 3455567777554433334444445667777777777888889999999986643
No 16
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=33.95 E-value=1.1e+02 Score=27.46 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=28.6
Q ss_pred cccccCChHHHHHHHHHHhhhcccHHHHHHHHHHH
Q 039022 142 TEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQ 176 (222)
Q Consensus 142 ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~ 176 (222)
.+....|.++.+++.+.|++.|+++++|+.-+...
T Consensus 90 ~~i~~~p~~e~~el~~iy~~~G~~~~~a~~~~~~l 124 (234)
T cd02433 90 RELRKHPLEEAAELALIYRAKGLDEEEAKRVASQL 124 (234)
T ss_pred HHhhhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45566788999999999999999999998666533
No 17
>PRK14278 chaperone protein DnaJ; Provisional
Probab=31.89 E-value=58 Score=30.77 Aligned_cols=52 Identities=15% Similarity=0.325 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCcc
Q 039022 130 TKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGSSK 183 (222)
Q Consensus 130 ~~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~~ 183 (222)
.+|.++|+.|..++---..|. ++.++.|+++.-+-+-...+-+|++||..+.
T Consensus 18 ~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 18 AEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred HHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 556677888866654333343 3456778888888888888889999998664
No 18
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=29.88 E-value=89 Score=21.19 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=22.2
Q ss_pred HHHHHHHhhhcccHHHHHHHHHHHHhc
Q 039022 153 AKLEQDFKDMKLAQRAARRELRRQMYG 179 (222)
Q Consensus 153 a~~~e~~k~~~i~~~~a~~~~~~~~~~ 179 (222)
+..++.|..+.-+-+-...+.+|+.|+
T Consensus 38 ~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 38 AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 677788888888888888888888885
No 19
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=28.61 E-value=43 Score=23.48 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=15.2
Q ss_pred hHHhhHhh-cCChhHHhhcC
Q 039022 97 HALRCIDK-AGGIDEYLLKT 115 (222)
Q Consensus 97 raLRTIdK-~GGlD~YLLkt 115 (222)
.++.+|+. .||+++||.+.
T Consensus 33 ~~l~~i~~~yGs~e~Yl~~~ 52 (68)
T PF13348_consen 33 AALDAIDERYGSVENYLREE 52 (68)
T ss_dssp HHHHHHHHHHSSHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHc
Confidence 56778875 99999999654
No 20
>COG5457 Uncharacterized conserved small protein [Function unknown]
Probab=27.51 E-value=67 Score=23.73 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=19.2
Q ss_pred HHHhhhcccHHHHHHHHHHHH
Q 039022 157 QDFKDMKLAQRAARRELRRQM 177 (222)
Q Consensus 157 e~~k~~~i~~~~a~~~~~~~~ 177 (222)
+.|++.||+..++..|+++..
T Consensus 41 ~~L~DiGisR~d~~~e~~k~f 61 (63)
T COG5457 41 HLLSDIGISRADIEAEAAKPF 61 (63)
T ss_pred HHHHHcCCCHHHHHHHHHHhh
Confidence 789999999999999999865
No 21
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=26.99 E-value=1.8e+02 Score=22.57 Aligned_cols=56 Identities=14% Similarity=0.286 Sum_probs=39.6
Q ss_pred CCCCHHHhHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHHHHHHHHHH
Q 039022 118 HKMDTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQM 177 (222)
Q Consensus 118 ~~L~selG~~lK~~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~ 177 (222)
..|...-...|++-|..-|..... ...|.+-..|.+.|.+|.-+.++...+...++
T Consensus 32 p~l~~~tdeLW~~~i~rdFp~~~~----~~~~~~~~~Wr~~Y~~~~~e~e~~~~~~~~~L 87 (109)
T PF06881_consen 32 PHLIEDTDELWKKLIKRDFPEESK----RQKPKEPESWRELYEKLKKEREEKLKEATERL 87 (109)
T ss_pred CCcchhhHHHHHHHHHhHCcChhh----cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667899999888875222 22366667999999999988888885555444
No 22
>PRK14288 chaperone protein DnaJ; Provisional
Probab=26.32 E-value=69 Score=30.18 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCcc
Q 039022 130 TKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGSSK 183 (222)
Q Consensus 130 ~~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~~ 183 (222)
.+|.++|+.|..++---..|.+ .+.++.|++..-+-+-..-+..|++||..+.
T Consensus 18 ~eIkkayrkla~k~HPD~~~~~-~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 18 ETIKKSYRKLALKYHPDRNAGD-KEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred HHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 4566778888555433333322 2246677777766677777888899997654
No 23
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=26.19 E-value=1.7e+02 Score=26.22 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=28.9
Q ss_pred ccccccCChHHHHH-HHHHHhhhcccHHHHHHHHHHHH
Q 039022 141 QTEVAFFTPEEEAK-LEQDFKDMKLAQRAARRELRRQM 177 (222)
Q Consensus 141 ~ke~~~~~pe~ea~-~~e~~k~~~i~~~~a~~~~~~~~ 177 (222)
+.+....|.++..+ +.+.|.+.|++.+++.+.+...+
T Consensus 90 ~~~i~~~~~~E~~e~l~~~~~~~G~~~~~~~~~~~~~l 127 (241)
T cd02435 90 QEAVEASPSTEQEEIILYDLVQYGLVPLETAASTVTDL 127 (241)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33455566677777 89999999999999998877655
No 24
>PF10985 DUF2805: Protein of unknown function (DUF2805); InterPro: IPR019882 This entry represents an uncharacterised bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae O1 biovar eltor str. N16961 has three identical copies.
Probab=25.41 E-value=53 Score=25.12 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHH
Q 039022 150 EEEAKLEQDFKDMKLAQRAARRELRRQM 177 (222)
Q Consensus 150 e~ea~~~e~~k~~~i~~~~a~~~~~~~~ 177 (222)
||+-.|+..-.+||+++.|.-.-||+.|
T Consensus 10 eDRtpFeaI~~qfGl~E~eVi~lMR~~L 37 (73)
T PF10985_consen 10 EDRTPFEAIERQFGLSEKEVIKLMRKEL 37 (73)
T ss_pred ccCCCHHHHHHHHCCCHHHHHHHHHhhc
Confidence 5677888899999999999999999877
No 25
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=23.90 E-value=90 Score=29.85 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCcchhhhh
Q 039022 130 TKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGSSKQKQIE 188 (222)
Q Consensus 130 ~~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~~~~~~~ 188 (222)
.+|.++|+.|..++---..|-.. |.||+..-+=|-.--+-.|++||.-+.+..-+
T Consensus 19 ~eikkayrkla~k~HpDkn~~~~----ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~ 73 (337)
T KOG0712|consen 19 EEIKKAYRKLALKYHPDKNPDAG----EKFKEISQAYEVLSDPEKREIYDQYGEEGLQG 73 (337)
T ss_pred HHHHHHHHHHHHHhCCCCCccHH----HHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcc
Confidence 56778899997777554555543 44455444445555556778999988666533
No 26
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=23.63 E-value=13 Score=29.35 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=37.1
Q ss_pred HHhcCCCCCCchhhhhhhhcCCCchhhhhccccccccCceee
Q 039022 14 RKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQ 55 (222)
Q Consensus 14 ~~vg~~~~~~~~~~~~~~~~~P~~~~v~krSr~Cl~~GK~~~ 55 (222)
++||-.+..-+.|=.++++.+-+..+.+.....|.+||+..+
T Consensus 6 kkvGi~Gr~G~RYG~slRK~v~kie~~q~a~y~CpfCgk~~v 47 (90)
T PRK03976 6 KKVGSAGRFGARYGRKIRKRVADIEEKMRAKHVCPVCGRPKV 47 (90)
T ss_pred ceEeecCCCcCccCHHHHHHHHHHHHHHhcCccCCCCCCCce
Confidence 678888888899999999999999998988899999987654
No 27
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=22.78 E-value=2.4e+02 Score=22.14 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=36.9
Q ss_pred ehhHHhhHhhcCChhHHhhcCCCCC--------CCHHHhHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHhhh
Q 039022 95 TTHALRCIDKAGGIDEYLLKTPYHK--------MDTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDM 162 (222)
Q Consensus 95 TTraLRTIdK~GGlD~YLLkt~~~~--------L~selG~~lK~~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~ 162 (222)
.|++++.+.+.| ||...++.. | ++.|..+...+..........-...++|++.+.+.+.+.++
T Consensus 63 vt~~v~~Le~~G----lV~r~~~~~DrR~~~l~L-T~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~l~~l 133 (144)
T PRK03573 63 LVRTLDQLEEKG----LISRQTCASDRRAKRIKL-TEKAEPLISEVEAVINKTRAEILHGISAEEIEQLITLIAKL 133 (144)
T ss_pred HHHHHHHHHHCC----CEeeecCCCCcCeeeeEE-ChHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 345555566664 444443322 3 35565555555555555544445567888888888888766
No 28
>KOG2555 consensus AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase [Nucleotide transport and metabolism]
Probab=22.29 E-value=66 Score=32.36 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=43.0
Q ss_pred HHhhHhhcCChhHHhhcCCCCCCCHHHhHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHH
Q 039022 98 ALRCIDKAGGIDEYLLKTPYHKMDTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAA 169 (222)
Q Consensus 98 aLRTIdK~GGlD~YLLkt~~~~L~selG~~lK~~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a 169 (222)
..+--++.+.||.|.+-+-.++.. +- . |....+.-.+-+.+|++.+|.+.++..-++-.++
T Consensus 477 gvkr~e~snaid~~v~g~~~e~~~--~~-~--------~~~~fe~~p~~~t~~e~~ewl~~l~~v~l~SDAF 537 (588)
T KOG2555|consen 477 GVKRAEKSNAIDLYVTGTVGEDPE--LS-Q--------WESKFEEVPEPLTKEERKEWLEKLKGVSLSSDAF 537 (588)
T ss_pred cccchhhccchhhhcccccccCcc--hh-h--------hhhhhhhcccccChHHHHHHHHHhcCceeccccc
Confidence 445566788899998887755542 21 2 3333444556678999999999999999987664
No 29
>TIGR03643 conserved hypothetical protein TIGR03643. This model describes an uncharacterized bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae El Tor N16961 has three identical copies.
Probab=21.87 E-value=67 Score=24.50 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHH
Q 039022 150 EEEAKLEQDFKDMKLAQRAARRELRRQM 177 (222)
Q Consensus 150 e~ea~~~e~~k~~~i~~~~a~~~~~~~~ 177 (222)
||+-.|+..-.+||+++.|.-.-||+.|
T Consensus 11 eDRtpFeaI~~~fGL~E~eVi~lMR~~l 38 (72)
T TIGR03643 11 EDRTPFEAIEQQFGLSEKEVIKLMRQNL 38 (72)
T ss_pred ccCCCHHHHHHHHCCCHHHHHHHHHhhc
Confidence 5667788888999999999999999877
No 30
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=21.24 E-value=29 Score=27.34 Aligned_cols=42 Identities=26% Similarity=0.266 Sum_probs=36.9
Q ss_pred HHhcCCCCCCchhhhhhhhcCCCchhhhhccccccccCceee
Q 039022 14 RKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQ 55 (222)
Q Consensus 14 ~~vg~~~~~~~~~~~~~~~~~P~~~~v~krSr~Cl~~GK~~~ 55 (222)
++||-.+..-+.|=.++++.+-+..+.+.....|.+||+..+
T Consensus 6 kkvG~~GrfG~RYG~slRK~v~kie~~q~a~y~CpfCgk~~v 47 (90)
T PTZ00255 6 KKVGITGKYGTRYGASLRKQIKKIEISQHAKYFCPFCGKHAV 47 (90)
T ss_pred ceeeecCCCcCccCHHHHHHHHHHHHHHhCCccCCCCCCCce
Confidence 578888888899999999999999999999999999997644
No 31
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=20.72 E-value=30 Score=27.34 Aligned_cols=42 Identities=24% Similarity=0.258 Sum_probs=36.3
Q ss_pred HHhcCCCCCCchhhhhhhhcCCCchhhhhccccccccCceee
Q 039022 14 RKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQ 55 (222)
Q Consensus 14 ~~vg~~~~~~~~~~~~~~~~~P~~~~v~krSr~Cl~~GK~~~ 55 (222)
++||-....-+.|=.++++.+-+..+.+.....|.+||+..+
T Consensus 5 kkvG~~GrfG~RYG~slRK~v~kie~~q~a~y~CpfCgk~~v 46 (91)
T TIGR00280 5 KKVGITGRFGPRYGLKLRRQVKKIEIQQKAKYVCPFCGKKTV 46 (91)
T ss_pred ceeeecCCCcCccCHHHHHHHHHHHHHHhcCccCCCCCCCce
Confidence 577877788888999999999999999999999999997643
No 32
>PRK07758 hypothetical protein; Provisional
Probab=20.63 E-value=62 Score=25.82 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=33.0
Q ss_pred EEEeehhHHhhHhhcCChhHH--hhcCCCCCCCHHHhHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHhhhccc
Q 039022 91 RVKVTTHALRCIDKAGGIDEY--LLKTPYHKMDTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLA 165 (222)
Q Consensus 91 rVkVTTraLRTIdK~GGlD~Y--LLkt~~~~L~selG~~lK~~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~ 165 (222)
--++|.++++++..+ ||+.. |.+.+..+|. ... .+-|..=.++.+.|+++|++
T Consensus 39 ~~~LSvRA~N~Lk~A-GI~TL~dLv~~te~ELl-------------~ik--------nlGkKSL~EIkekL~E~GLs 93 (95)
T PRK07758 39 LSLLSAPARRALEHH-GIHTVEELSKYSEKEIL-------------KLH--------GMGPASLPKLRKALEESGLS 93 (95)
T ss_pred CccccHHHHHHHHHc-CCCcHHHHHcCCHHHHH-------------Hcc--------CCCHHHHHHHHHHHHHcCCC
Confidence 347899999999999 66643 2222222221 122 23455558888999988875
No 33
>PRK14286 chaperone protein DnaJ; Provisional
Probab=20.34 E-value=1.1e+02 Score=28.73 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=31.9
Q ss_pred HHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCcch
Q 039022 131 KIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGSSKQ 184 (222)
Q Consensus 131 ~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~~~ 184 (222)
+|.++|+.|..++---..|.+ .+.++.|+++.-+-+-...+.+|++||..+..
T Consensus 20 eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 20 EIKSAYRKLAIKYHPDKNKGN-KESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred HHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 466668777555533233321 22355666666666666678888999976543
Done!