Query 039022
Match_columns 222
No_of_seqs 200 out of 1031
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:54:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_X 50S ribosomal protein L 100.0 9E-29 3.1E-33 184.9 6.8 70 44-115 1-70 (77)
2 3bbo_Y Ribosomal protein L28; 99.9 1.4E-27 4.8E-32 197.8 -2.4 101 14-116 43-145 (151)
3 2jz6_A 50S ribosomal protein L 99.9 2E-23 7E-28 156.3 5.7 60 43-104 6-65 (77)
4 2zjr_U 50S ribosomal protein L 99.9 1.1E-24 3.7E-29 164.4 -1.8 67 43-113 1-79 (81)
5 2jl6_1 50S ribosomal protein L 99.9 1.6E-23 5.5E-28 160.6 -1.2 65 43-111 1-78 (89)
6 3v2d_1 50S ribosomal protein L 99.8 9.9E-22 3.4E-26 152.9 4.1 60 43-105 1-73 (98)
7 2dmx_A DNAJ homolog subfamily 68.0 3.1 0.00011 29.9 2.5 58 131-188 25-82 (92)
8 1uz3_A EMSY protein; chromatin 50.1 31 0.0011 26.7 5.5 41 137-177 32-73 (102)
9 2ej7_A HCG3 gene; HCG3 protein 42.6 17 0.00058 25.2 2.7 53 130-182 24-76 (82)
10 2fmm_E Protein EMSY; ENT domai 41.4 47 0.0016 26.8 5.5 40 138-177 25-65 (133)
11 2lgw_A DNAJ homolog subfamily 38.1 15 0.00053 27.0 2.0 54 131-184 18-71 (99)
12 1wjz_A 1700030A21RIK protein; 30.1 42 0.0014 23.7 3.2 52 130-181 31-87 (94)
13 2ctr_A DNAJ homolog subfamily 27.4 59 0.002 22.9 3.6 55 131-187 23-77 (88)
14 2och_A Hypothetical protein DN 20.3 74 0.0025 21.5 2.8 48 131-182 24-71 (73)
15 2l6l_A DNAJ homolog subfamily 20.1 68 0.0023 24.9 2.9 41 150-190 50-90 (155)
No 1
>3r8s_X 50S ribosomal protein L28; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2i2v_X 2wwq_0* 3fik_X 3j01_X 3j0t_Z* 3j0w_Z* 3j0y_Z* 3j11_Z* 3j12_Z* 3j14_Z* 3j19_X 3oas_X 3oat_X* 2i2t_X* 3ofd_X 3ofc_X 3ofr_X* 3ofz_X* 3og0_X 3ofq_X ...
Probab=99.95 E-value=9e-29 Score=184.93 Aligned_cols=70 Identities=30% Similarity=0.470 Sum_probs=67.4
Q ss_pred cccccccCceeeecccccCCCCCcccceeccceeEEEEEEccCCeEEEEEeehhHHhhHhhcCChhHHhhcC
Q 039022 44 AKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKT 115 (222)
Q Consensus 44 Sr~Cl~~GK~~~~GN~VSh~S~~KTrR~WkPNLqkkrl~SeiLgr~irVkVTTraLRTIdK~GGlD~YLLkt 115 (222)
|++|++|||++++||+||| |+++|+|+|+||||++++|++.++++++|+|||+|||||||. |||+||+..
T Consensus 1 sr~C~itGK~~~~Gn~VSh-s~~kTkR~~~PNlq~~r~~~~~~~r~~rlrVst~~LRti~k~-Gld~~l~~~ 70 (77)
T 3r8s_X 1 SRVCQVTGKRPVTGNNRSH-ALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVIDKK-GIDTVLAEL 70 (77)
T ss_dssp CCCCTTTCCCCEEEEEECS-SCCEEEEEECCCEEEEEEEEGGGTEEEEEEEEHHHHHHHHHH-CHHHHHHHH
T ss_pred CCEeeeCCCccccCceEec-cCCccCceecCccEEEEEEECCCCEEEEEEEEcceEeeeccc-CHHHHHHHH
Confidence 5799999999999999999 899999999999999999999999999999999999999999 899999764
No 2
>3bbo_Y Ribosomal protein L28; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.92 E-value=1.4e-27 Score=197.81 Aligned_cols=101 Identities=25% Similarity=0.289 Sum_probs=66.9
Q ss_pred HHhcCCCCCCchhhhhhh-hcCCCchhhhh-ccccccccCceeeecccccCCCCCcccceeccceeEEEEEEccCCeEEE
Q 039022 14 RKVGGEKNLAPGVKESLK-KCVPDSRIVMN-RAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIR 91 (222)
Q Consensus 14 ~~vg~~~~~~~~~~~~~~-~~~P~~~~v~k-rSr~Cl~~GK~~~~GN~VSh~S~~KTrR~WkPNLqkkrl~SeiLgr~ir 91 (222)
.++||++-.+++.++..+ ..+|....+.. ++++|+||||++++||+||| +++||+|+|+||||++++|++.++++++
T Consensus 43 s~~~g~~~~~~~~~~~~~~~~~p~~~~~~~mMsR~C~itGK~p~~GNnVSH-S~~KTKRrw~PNLQkvri~~~~g~r~vr 121 (151)
T 3bbo_Y 43 SQLSGLKISSTHFISSSAPLSVPFKPSLQPVARRICPFTGKKSNRANKVSH-SNHKTKKLQFVNLQYKRIWWEAGKRYVK 121 (151)
T ss_dssp ---------------------------------CCCCCSCCTTCCCCCCEE-CCSSSCCEECCCCCCCCBCCCTTSSCCC
T ss_pred hhccCcccccccccccccccccCCCCccccchhceeeccCcccccCCeeee-cCCccCceeccccEEEEEEECCCCEEEE
Confidence 467777766556655554 46677654333 77889999999999999999 8999999999999999999998899999
Q ss_pred EEeehhHHhhHhhcCChhHHhhcCC
Q 039022 92 VKVTTHALRCIDKAGGIDEYLLKTP 116 (222)
Q Consensus 92 VkVTTraLRTIdK~GGlD~YLLkt~ 116 (222)
|+|||+|||+|++. |||+||++..
T Consensus 122 lrVsTr~LRTikk~-GlD~~l~~~g 145 (151)
T 3bbo_Y 122 LRLSTKAIKTIEKN-GLDAVAKKAG 145 (151)
T ss_dssp BCCCSSSTTTTTTS-TTTCSCCSSS
T ss_pred EEEEchheeehhhh-hHHHHHHHhc
Confidence 99999999999999 8999997643
No 3
>2jz6_A 50S ribosomal protein L28; structure, NESG, ribonucleoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima MSB8} SCOP: d.325.1.1
Probab=99.88 E-value=2e-23 Score=156.29 Aligned_cols=60 Identities=32% Similarity=0.356 Sum_probs=57.1
Q ss_pred ccccccccCceeeecccccCCCCCcccceeccceeEEEEEEccCCeEEEEEeehhHHhhHhh
Q 039022 43 RAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDK 104 (222)
Q Consensus 43 rSr~Cl~~GK~~~~GN~VSh~S~~KTrR~WkPNLqkkrl~SeiLgr~irVkVTTraLRTIdK 104 (222)
||++|++|||++++||+||| |+++|+|+|+||||++++|++. |++++|+|||+|||+++.
T Consensus 6 Msr~C~itGK~~~~Gn~VSH-S~~kTkR~~~PNLq~vr~~~~~-g~~~rl~Vst~~LRtgkv 65 (77)
T 2jz6_A 6 MAKRCEVCGKAPRSGNTVSH-SDKKSERWFRPNLQKVRVVLPD-GTIKRMRVCTSCLKSGKV 65 (77)
T ss_dssp CCCCCTTTCCCCCCCCCCCC-SCCCCSSSCBTTEEEEEEEETT-TEEEEEEEEHHHHHHCCS
T ss_pred eeeeeeecCCccccCCeEee-cCCccCcccccceEEEEEEecC-CcEEEEEEEhHHeeeccE
Confidence 68899999999999999999 8999999999999999999965 999999999999999873
No 4
>2zjr_U 50S ribosomal protein L28; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.325.1.1 PDB: 2zjp_U 2zjq_U 3cf5_U* 3dll_U* 3pio_U* 3pip_U*
Probab=99.88 E-value=1.1e-24 Score=164.45 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=56.0
Q ss_pred ccccccccCceeeecccccCC------------CCCcccceeccceeEEEEEEccCCeEEEEEeehhHHhhHhhcCChhH
Q 039022 43 RAKRGLFAGKHIQFGNRVSED------------GGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDE 110 (222)
Q Consensus 43 rSr~Cl~~GK~~~~GN~VSh~------------S~~KTrR~WkPNLqkkrl~SeiLgr~irVkVTTraLRTIdK~GGlD~ 110 (222)
||++|++|||++++||+|||+ |+++|+|+|+||||++++|. +|++++|+|||+|||+||| |||+
T Consensus 1 Msr~C~itGK~~~~Gn~vshrGkak~~Gg~~s~s~~kTkR~~~PNlq~vr~~~--~g~~~~l~Vst~~LRti~k--Gld~ 76 (81)
T 2zjr_U 1 MSRECYLTGKKNLVVNSVIRRGKARADGGVGRKTTGITKRVQRANLHKKAIRE--NGQVKTVWLSANALRTLSK--GPYK 76 (81)
T ss_dssp -------CCSSSCCCCCCCCCCEESCCCTTTCSCCEECCCCCCCCCCCCCCCC--SSSCCCCCCCHHHHHHHHS--SCCS
T ss_pred CCCEeecCCCccccCCeeeeccccccccccchhhCCccCceecccceEEEEEE--CCEEEEEEEEcceeeeech--hHHH
Confidence 578999999999999999993 48999999999999999994 6999999999999999999 8999
Q ss_pred Hhh
Q 039022 111 YLL 113 (222)
Q Consensus 111 YLL 113 (222)
++.
T Consensus 77 ~~~ 79 (81)
T 2zjr_U 77 GIE 79 (81)
T ss_dssp SCC
T ss_pred HHh
Confidence 864
No 5
>2jl6_1 50S ribosomal protein L28, 50S ribosomal protein L25; methylation, translation, paromomycin, tRNA-binding, tRNA, zinc, mRNA, ribosome, repressor, RNA-binding; 3.45A {Thermus thermophilus} PDB: 2jl8_1
Probab=99.86 E-value=1.6e-23 Score=160.61 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=58.7
Q ss_pred ccccccccCceeeecccccCCCCC-------------cccceeccceeEEEEEEccCCeEEEEEeehhHHhhHhhcCChh
Q 039022 43 RAKRGLFAGKHIQFGNRVSEDGGN-------------KTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGID 109 (222)
Q Consensus 43 rSr~Cl~~GK~~~~GN~VSh~S~~-------------KTrR~WkPNLqkkrl~SeiLgr~irVkVTTraLRTIdK~GGlD 109 (222)
||++|++|||++++||+||| |++ +|+|+|+||||++++|++ |++++|+|||+|||||++. |++
T Consensus 1 Msr~C~itGK~~~~Gn~VSh-s~~ak~~GGvG~k~t~kTkR~f~PNLqkvr~~~~--g~~~rl~Vstk~LRtI~k~-g~~ 76 (89)
T 2jl6_1 1 MSKVCEISGKRPIVANSIQR-RGKAKREGGVGKKTTGISKRRQYPNLQKVRVRVA--GQEITFRVAASHIPKVYEL-VER 76 (89)
T ss_dssp --CCCSSSCCCCEEEEEEEE-ESCCTTTSSSCCEEEEEEEEEECCCBCCBCCEET--TEECCBCCBGGGHHHHHHH-HSC
T ss_pred CCCEeecCCCccccCceEee-cCccccccccccccCCccceEEccccEEEEEEEC--CEEEEEEEEChhheEcccc-chh
Confidence 57899999999999999999 674 999999999999999995 9999999999999999999 566
Q ss_pred HH
Q 039022 110 EY 111 (222)
Q Consensus 110 ~Y 111 (222)
..
T Consensus 77 a~ 78 (89)
T 2jl6_1 77 AA 78 (89)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 6
>3v2d_1 50S ribosomal protein L28; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_1 2v47_1 2v49_1 2wdi_1 2wdj_1 2wdl_1 2wdn_1 2wh2_1 2wh4_1 2wrj_1 2wrl_1 2wro_1 2wrr_1 2x9s_1 2x9u_1 2xqe_1 2xtg_1 2xux_1 2y0v_1 2y0x_1 ...
Probab=99.83 E-value=9.9e-22 Score=152.95 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=55.5
Q ss_pred ccccccccCceeeecccccCCCCC-------------cccceeccceeEEEEEEccCCeEEEEEeehhHHhhHhhc
Q 039022 43 RAKRGLFAGKHIQFGNRVSEDGGN-------------KTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKA 105 (222)
Q Consensus 43 rSr~Cl~~GK~~~~GN~VSh~S~~-------------KTrR~WkPNLqkkrl~SeiLgr~irVkVTTraLRTIdK~ 105 (222)
||++|++|||++++||+||| |++ +|+|+|+||||++++|++ |++++|+|||+|||||++.
T Consensus 1 Msr~C~itGK~p~~Gn~VSh-s~~Ak~~GGvG~k~t~kTkR~f~PNLqkvr~~~~--G~~~rlrVst~~LRtI~~~ 73 (98)
T 3v2d_1 1 MSKVCEISGKRPIVANSIQR-RGKAKREGGVGKKTTGISKRRQYPNLQKVRVRVA--GQEITFRVAASHIPKVYEL 73 (98)
T ss_dssp -CCCCTTTCCCCEEEEEEEE-EEECGGGTSSEEEEEEEEEEEECCCEEEEEEEET--TEEEEEEEEGGGHHHHHHH
T ss_pred CCCeeecCCCccccCccEec-cCccccccccccccCCcccceeccceEEEEEEEC--CEEEEEEEEchhheehhhh
Confidence 57899999999999999999 674 999999999999999995 9999999999999999853
No 7
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.04 E-value=3.1 Score=29.93 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCcchhhhh
Q 039022 131 KIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGSSKQKQIE 188 (222)
Q Consensus 131 ~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~~~~~~~ 188 (222)
.|.+.|..|..++---..|......++.|+++.-+-+-...+.+|+.|+..+.+..-.
T Consensus 25 eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (92)
T 2dmx_A 25 DIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA 82 (92)
T ss_dssp HHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred HHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 3444466553332211123223345567777777778888888999999876554433
No 8
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=50.13 E-value=31 Score=26.65 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=33.6
Q ss_pred HHhccccccc-CChHHHHHHHHHHhhhcccHHHHHHHHHHHH
Q 039022 137 EELGQTEVAF-FTPEEEAKLEQDFKDMKLAQRAARRELRRQM 177 (222)
Q Consensus 137 ~~l~~ke~~~-~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~ 177 (222)
..+...+++- .+.|.|+-+.+-.++|.|+.++.+.|+|+..
T Consensus 32 svlrAf~AqG~Lsweke~LLt~LR~~L~IS~eeH~~elrr~~ 73 (102)
T 1uz3_A 32 GVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAV 73 (102)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhc
Confidence 3445555544 7889999999999999999999999999887
No 9
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.62 E-value=17 Score=25.23 Aligned_cols=53 Identities=23% Similarity=0.297 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCc
Q 039022 130 TKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGSS 182 (222)
Q Consensus 130 ~~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~ 182 (222)
..|.+.|..|..++---..|.......+.|+++.-+-+-...+.+|+.|+..+
T Consensus 24 ~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 24 EAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp HHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 35566687775443222223333455667777777777777888889998765
No 10
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=41.45 E-value=47 Score=26.79 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=32.1
Q ss_pred Hhccccccc-CChHHHHHHHHHHhhhcccHHHHHHHHHHHH
Q 039022 138 ELGQTEVAF-FTPEEEAKLEQDFKDMKLAQRAARRELRRQM 177 (222)
Q Consensus 138 ~l~~ke~~~-~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~ 177 (222)
.+....++- .+.|.|+-+.+-.++|.|+.++.+.|+||..
T Consensus 25 vl~Af~AqG~LSweke~LLt~LR~~L~IS~eeH~~elrr~~ 65 (133)
T 2fmm_E 25 VISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAV 65 (133)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Confidence 344444443 6788888888888999999999999999887
No 11
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=38.13 E-value=15 Score=27.01 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=33.0
Q ss_pred HHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCcch
Q 039022 131 KIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGSSKQ 184 (222)
Q Consensus 131 ~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~~~ 184 (222)
+|.+.|..|..++---..|.......+.|+++.-+-+-...+.+|+.|+..+.+
T Consensus 18 eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~ 71 (99)
T 2lgw_A 18 DIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGRE 71 (99)
T ss_dssp HHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 455557666443322222333334566777777777778888899999976543
No 12
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=30.06 E-value=42 Score=23.69 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=34.6
Q ss_pred HHHHHHHHHhccccc-----ccCChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCC
Q 039022 130 TKIEKLYEELGQTEV-----AFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGS 181 (222)
Q Consensus 130 ~~I~~~y~~l~~ke~-----~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~ 181 (222)
.+|.+.|..|..++- ...+++......+.|+++.-+-+-...+.+|+.|+..
T Consensus 31 ~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 87 (94)
T 1wjz_A 31 SDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQ 87 (94)
T ss_dssp HHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 456667888744332 1223455667778888887777777778888888753
No 13
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.43 E-value=59 Score=22.93 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=31.4
Q ss_pred HHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCcchhhh
Q 039022 131 KIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGSSKQKQI 187 (222)
Q Consensus 131 ~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~~~~~~ 187 (222)
.|.+.|..|..++---..+. ....+.|.++.-+-+-...+.+|+.|+..+.+...
T Consensus 23 eIk~ayr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 77 (88)
T 2ctr_A 23 QIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFT 77 (88)
T ss_dssp HHHHHHHHHHHHTCTTTCCS--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 45555766643322111111 12345666666666777778889999987754443
No 14
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=20.27 E-value=74 Score=21.46 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=25.9
Q ss_pred HHHHHHHHhcccccccCChHHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCc
Q 039022 131 KIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGGSS 182 (222)
Q Consensus 131 ~I~~~y~~l~~ke~~~~~pe~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~ 182 (222)
.|.+.|..|..+.---..|.. .+.|+++.-+-+-...+.+|+.|+..+
T Consensus 24 eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 24 ELKKAYRKMALKFHPDKNPDG----AEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp HHHHHHHHHHHHTCTTTCTTC----HHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCcCCCcCH----HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 444556666433221112222 245566655666666777888888654
No 15
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=20.11 E-value=68 Score=24.87 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHhcCCcchhhhhcC
Q 039022 150 EEEAKLEQDFKDMKLAQRAARRELRRQMYGGSSKQKQIEQG 190 (222)
Q Consensus 150 e~ea~~~e~~k~~~i~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (222)
++.+...+.|+++.-+-+-...+.+|+.|+.......+.++
T Consensus 50 ~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~~~~~ 90 (155)
T 2l6l_A 50 GTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDDLRNV 90 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhhcccc
Confidence 45555667777777777777778889999976555444433
Done!